AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001063.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001063.01.T01 MTR_1g029720 97.980 198 4 0 1 198 1 198 1.34e-144 400
MsG0180001063.01.T01 MTR_7g059150 28.467 137 90 2 27 155 65 201 1.44e-13 67.8
MsG0180001063.01.T01 MTR_2g090135 28.244 131 86 2 38 160 79 209 8.76e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001063.01.T01 AT1G77230 53.488 215 79 3 1 195 1 214 4.56e-68 207

Find 51 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGCTTGGAATGCTTTAA+AGG 0.240159 1:+15418448 MsG0180001063.01.T01:CDS
ATAGAGAAGCATTGGGTAAA+TGG 0.246957 1:+15418351 MsG0180001063.01.T01:CDS
GGCAGAGCGCAGCTGAATTA+TGG 0.300886 1:+15419653 MsG0180001063.01.T01:CDS
AAGCTTTCAATAGCATTATC+TGG 0.342887 1:-15419680 None:intergenic
CTCCGATTTCTAGTAAAACT+TGG 0.346366 1:-15418427 None:intergenic
AGAATTAGTTATGGTATGTT+TGG 0.361706 1:+15420070 MsG0180001063.01.T01:three_prime_UTR
TCCTGTGCTTCTTCATAATC+AGG 0.370373 1:-15419836 None:intergenic
GGATTAAGTGAAATTCAAAA+TGG 0.376509 1:+15419914 MsG0180001063.01.T01:CDS
TTATGTTTATGTGATAAATA+TGG 0.389059 1:+15420011 MsG0180001063.01.T01:three_prime_UTR
TAGAGAAGCATTGGGTAAAT+GGG 0.391319 1:+15418352 MsG0180001063.01.T01:CDS
GGGGAAGTATAGAGAAGCAT+TGG 0.393951 1:+15418343 MsG0180001063.01.T01:CDS
ATGAAATGTTCATAATTAGT+TGG 0.413734 1:+15419967 MsG0180001063.01.T01:exon
GTGTCGTTGTCTTGCTCAAA+AGG 0.431841 1:-15415762 None:intergenic
GCCTTCTGTTCATGCAAAGC+TGG 0.438897 1:-15418404 None:intergenic
AGAAAGCAACTTCACTCATC+AGG 0.449250 1:+15419893 MsG0180001063.01.T01:CDS
TTGCAGGCTTGGGTCACACT+TGG 0.449401 1:+15419632 MsG0180001063.01.T01:intron
TCATGCAAAGCTGGAACATC+AGG 0.451462 1:-15418395 None:intergenic
TTAGTTATGGTATGTTTGGT+TGG 0.459604 1:+15420074 MsG0180001063.01.T01:three_prime_UTR
TTGTGATGATTGTTCAGAAT+CGG 0.465839 1:-15415829 None:intergenic
TACTAGAAATCGGAGATGCT+TGG 0.470911 1:+15418435 MsG0180001063.01.T01:CDS
AGTATTGGTTTGATAAAATG+AGG 0.473948 1:+15420194 MsG0180001063.01.T01:three_prime_UTR
TGACAGAGCTTTAGCTCTCA+AGG 0.493209 1:+15419703 MsG0180001063.01.T01:CDS
GTGATAAATATGGTACTCCT+AGG 0.494465 1:+15420021 MsG0180001063.01.T01:three_prime_UTR
GTCGGTGAAGTGTGATAAAG+AGG 0.495915 1:-15415736 None:intergenic
GATAGATTAAGAATTAGTTA+TGG 0.498036 1:+15420061 MsG0180001063.01.T01:three_prime_UTR
ATTCAAAATGGTTATACTGT+AGG 0.516813 1:+15419926 MsG0180001063.01.T01:CDS
ATGGGAAGCTGCTCTTACAT+TGG 0.523234 1:+15418370 MsG0180001063.01.T01:CDS
ACTCAACATGATTCTTCTGA+TGG 0.523720 1:+15415789 MsG0180001063.01.T01:CDS
AATTAGTTGGAATGTATATG+TGG 0.539700 1:+15419980 MsG0180001063.01.T01:three_prime_UTR
TCCGATTTCTAGTAAAACTT+GGG 0.543228 1:-15418426 None:intergenic
CAGTGAAGAAGAGAAGAGGT+AGG 0.548190 1:+15415662 MsG0180001063.01.T01:five_prime_UTR
GCCTGATTATGAAGAAGCAC+AGG 0.549394 1:+15419835 MsG0180001063.01.T01:intron
TCCAGCTTTGCATGAACAGA+AGG 0.555181 1:+15418403 MsG0180001063.01.T01:CDS
GCTACGCAGTTTCAAACTCA+AGG 0.556440 1:+15415855 MsG0180001063.01.T01:CDS
GGAATGTATATGTGGAATGA+TGG 0.560762 1:+15419988 MsG0180001063.01.T01:three_prime_UTR
GGGAAGTATAGAGAAGCATT+GGG 0.566713 1:+15418344 MsG0180001063.01.T01:CDS
TCAAGGAGACAACCTTGCTA+TGG 0.579084 1:+15415872 MsG0180001063.01.T01:CDS
TGTGATAAAGAGGGTAAACA+AGG 0.580941 1:-15415726 None:intergenic
TTCAGAATCGGTAGAACGAA+CGG 0.582267 1:-15415817 None:intergenic
ATTGAAACCATCGTGGGCTG+AGG 0.582367 1:+15418842 MsG0180001063.01.T01:CDS
CGTTGTCTTGCTCAAAAGGA+AGG 0.585038 1:-15415758 None:intergenic
GTCTTGCTCAAAAGGAAGGT+CGG 0.592195 1:-15415754 None:intergenic
AGGTGAAAATGAAAGTAACA+TGG 0.593762 1:+15415682 MsG0180001063.01.T01:exon
GGAACAGTGAAGAAGAGAAG+AGG 0.616195 1:+15415658 MsG0180001063.01.T01:five_prime_UTR
TGTCATTGTCAAAAGAACCT+AGG 0.621532 1:-15420038 None:intergenic
AACAGAAGAATACCATAGCA+AGG 0.632891 1:-15415884 None:intergenic
TACTGAATTGAAACCATCGT+GGG 0.637358 1:+15418836 MsG0180001063.01.T01:CDS
CTTCTTTATTAGACGTGACG+CGG 0.638624 1:-15419870 None:intergenic
TCGGTGAAGTGTGATAAAGA+GGG 0.647175 1:-15415735 None:intergenic
TGTCGTACCTCAGCCCACGA+TGG 0.706434 1:-15418849 None:intergenic
CTACTGAATTGAAACCATCG+TGG 0.728758 1:+15418835 MsG0180001063.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAGAAATTAAAAAAT+GGG + Chr1:15418061-15418080 MsG0180001063.01.T01:intron 10.0%
!! CTAATAATACTAATTTAAAT+CGG - Chr1:15418009-15418028 None:intergenic 10.0%
!!! AAAGTTGATTTTATTTATAT+GGG + Chr1:15417525-15417544 MsG0180001063.01.T01:intron 10.0%
!!! AAGGTTTTAAAAATATAAAT+AGG - Chr1:15417725-15417744 None:intergenic 10.0%
!!! AGGTTTTAAAAATATAAATA+GGG - Chr1:15417724-15417743 None:intergenic 10.0%
!!! TTATTGCTTAAAATATTTTT+TGG + Chr1:15420170-15420189 MsG0180001063.01.T01:three_prime_UTR 10.0%
!! ACATATATAATTGAAAACTT+CGG - Chr1:15418217-15418236 None:intergenic 15.0%
!! ACTGATTATATAGTTTATAT+AGG - Chr1:15418659-15418678 None:intergenic 15.0%
!! ATAAAATTATAGCTTAGTTA+TGG + Chr1:15418978-15418997 MsG0180001063.01.T01:intron 15.0%
!! ATACTTAAAAAAGGTTAATT+TGG + Chr1:15419363-15419382 MsG0180001063.01.T01:intron 15.0%
!! ATTAAAACTAATTGAGAAAA+TGG - Chr1:15418957-15418976 None:intergenic 15.0%
!! GAAGAAAAGAAATTAAAAAA+TGG + Chr1:15418060-15418079 MsG0180001063.01.T01:intron 15.0%
!! TTATGTTTATGTGATAAATA+TGG + Chr1:15420011-15420030 MsG0180001063.01.T01:three_prime_UTR 15.0%
!! TTTAAAAATATAAATAGGGT+CGG - Chr1:15417720-15417739 None:intergenic 15.0%
!! TTTCGTATAAATTATAAACT+AGG - Chr1:15415972-15415991 None:intergenic 15.0%
!!! AAAATATTTTTTGGAAGTAT+TGG + Chr1:15420179-15420198 MsG0180001063.01.T01:three_prime_UTR 15.0%
!!! AAATTAATACAACTACTTTT+TGG + Chr1:15419805-15419824 MsG0180001063.01.T01:intron 15.0%
!!! AATTAACCTTTTTTAAGTAT+TGG - Chr1:15419363-15419382 None:intergenic 15.0%
!!! CAAAGTTGATTTTATTTATA+TGG + Chr1:15417524-15417543 MsG0180001063.01.T01:intron 15.0%
!!! TATTTAGATAAGTGAAATTT+TGG + Chr1:15416904-15416923 MsG0180001063.01.T01:intron 15.0%
!!! TTTATGTTTTTGTTTTTGTT+GGG + Chr1:15415914-15415933 MsG0180001063.01.T01:intron 15.0%
!!! TTTTATGTTTTTGTTTTTGT+TGG + Chr1:15415913-15415932 MsG0180001063.01.T01:intron 15.0%
!! ACTTATTTGAACTTATCTAT+TGG - Chr1:15416358-15416377 None:intergenic 20.0%
!! ATGAAATGTTCATAATTAGT+TGG + Chr1:15419967-15419986 MsG0180001063.01.T01:exon 20.0%
!! CATATATAATTGAAAACTTC+GGG - Chr1:15418216-15418235 None:intergenic 20.0%
!! GATAGATTAAGAATTAGTTA+TGG + Chr1:15420061-15420080 MsG0180001063.01.T01:three_prime_UTR 20.0%
!! GATCTATGAAAATAAAATGA+AGG - Chr1:15416965-15416984 None:intergenic 20.0%
!! GCAAATTTGACAATTATTAT+GGG - Chr1:15419179-15419198 None:intergenic 20.0%
!! TGCAAATTTGACAATTATTA+TGG - Chr1:15419180-15419199 None:intergenic 20.0%
!! TTAAAAATATAAATAGGGTC+GGG - Chr1:15417719-15417738 None:intergenic 20.0%
!! TTCTCTTAAAAGATTAAAAC+AGG - Chr1:15418087-15418106 None:intergenic 20.0%
!!! AATTGAAATTTTGTTCCTTA+AGG + Chr1:15417102-15417121 MsG0180001063.01.T01:intron 20.0%
!!! ATGTGAATAAATTTTACAGA+GGG - Chr1:15418891-15418910 None:intergenic 20.0%
!!! ATTCTTAGTAGTTTTTTACT+TGG + Chr1:15418778-15418797 MsG0180001063.01.T01:intron 20.0%
!!! CACATGGTATTTTAATTAAA+TGG - Chr1:15419275-15419294 None:intergenic 20.0%
!!! GTTACTTTTAATTATAAACC+AGG + Chr1:15420124-15420143 MsG0180001063.01.T01:three_prime_UTR 20.0%
!!! TAGTATTATTAGCTCTAATA+TGG + Chr1:15418017-15418036 MsG0180001063.01.T01:intron 20.0%
!!! TTAATCTAAAACCAAATGTT+GGG - Chr1:15417028-15417047 None:intergenic 20.0%
!!! TTAATTCTAAAAAGAAAAGC+AGG + Chr1:15418109-15418128 MsG0180001063.01.T01:intron 20.0%
! AAAATATAGAGATCATGATG+CGG - Chr1:15419097-15419116 None:intergenic 25.0%
! AAGATTATACACATACATAG+AGG - Chr1:15418928-15418947 None:intergenic 25.0%
! AATAGTGTTTGTGCTTTATA+TGG - Chr1:15417900-15417919 None:intergenic 25.0%
! AATTAGTTGGAATGTATATG+TGG + Chr1:15419980-15419999 MsG0180001063.01.T01:three_prime_UTR 25.0%
! ACTTGGTATATGATAATTGA+CGG + Chr1:15418795-15418814 MsG0180001063.01.T01:intron 25.0%
! AGAATTAGTTATGGTATGTT+TGG + Chr1:15420070-15420089 MsG0180001063.01.T01:three_prime_UTR 25.0%
! AGTACACCAATACTTAAAAA+AGG + Chr1:15419354-15419373 MsG0180001063.01.T01:intron 25.0%
! ATAACTGCTCTAGTATTATT+TGG - Chr1:15419563-15419582 None:intergenic 25.0%
! ATTCAAAATGGTTATACTGT+AGG + Chr1:15419926-15419945 MsG0180001063.01.T01:CDS 25.0%
! ATTTGACAATTATTATGGGA+CGG - Chr1:15419175-15419194 None:intergenic 25.0%
! CATGATAAGTTACCTTATAA+AGG - Chr1:15417587-15417606 None:intergenic 25.0%
! GGATTAAGTGAAATTCAAAA+TGG + Chr1:15419914-15419933 MsG0180001063.01.T01:CDS 25.0%
! GTTATATGATTGTAGTGATA+TGG - Chr1:15417275-15417294 None:intergenic 25.0%
! TGTGATATTGTGCATATAAT+GGG + Chr1:15419068-15419087 MsG0180001063.01.T01:intron 25.0%
! TTCTTAAACTTCATAGAGAA+AGG + Chr1:15419030-15419049 MsG0180001063.01.T01:intron 25.0%
! TTGTGATATTGTGCATATAA+TGG + Chr1:15419067-15419086 MsG0180001063.01.T01:intron 25.0%
! TTTATATGTGCAATGTACTA+TGG - Chr1:15416685-15416704 None:intergenic 25.0%
!! AATCAGACTTTATTTGTTTG+GGG + Chr1:15418724-15418743 MsG0180001063.01.T01:intron 25.0%
!! AGTTGTGATGAACTTAATTT+TGG + Chr1:15418676-15418695 MsG0180001063.01.T01:intron 25.0%
!! CAATCAGACTTTATTTGTTT+GGG + Chr1:15418723-15418742 MsG0180001063.01.T01:intron 25.0%
!! CATACAGGATTTTTAAATAG+GGG + Chr1:15416484-15416503 MsG0180001063.01.T01:intron 25.0%
!! CATGTGAATAAATTTTACAG+AGG - Chr1:15418892-15418911 None:intergenic 25.0%
!! GCATACAGGATTTTTAAATA+GGG + Chr1:15416483-15416502 MsG0180001063.01.T01:intron 25.0%
!! GTTAATCTAAAACCAAATGT+TGG - Chr1:15417029-15417048 None:intergenic 25.0%
!! TAATCTAAAACCAAATGTTG+GGG - Chr1:15417027-15417046 None:intergenic 25.0%
!! TGTGATTAAACTTTTTGCTT+AGG + Chr1:15415637-15415656 MsG0180001063.01.T01:five_prime_UTR 25.0%
!!! AAAGTGGAAAATATTGACTT+AGG - Chr1:15419309-15419328 None:intergenic 25.0%
!!! AAGTGAAATTTTGGTGTTAA+AGG + Chr1:15416913-15416932 MsG0180001063.01.T01:intron 25.0%
!!! AGTATTGGTTTGATAAAATG+AGG + Chr1:15420194-15420213 MsG0180001063.01.T01:three_prime_UTR 25.0%
!!! ATTCTAGTTCCTAAAATTCA+GGG + Chr1:15417230-15417249 MsG0180001063.01.T01:intron 25.0%
!!! TCTATATTTTGACATGCATT+TGG + Chr1:15419107-15419126 MsG0180001063.01.T01:intron 25.0%
!!! TTACAAAAGCTTCTAGAATA+AGG - Chr1:15417297-15417316 None:intergenic 25.0%
AAGCTTTCAATAGCATTATC+TGG - Chr1:15419683-15419702 None:intergenic 30.0%
ACAAACTATAGACAAGACAA+AGG - Chr1:15417799-15417818 None:intergenic 30.0%
ACCAACAAAAATTAAGAACC+TGG - Chr1:15420145-15420164 None:intergenic 30.0%
AGGTGAAAATGAAAGTAACA+TGG + Chr1:15415682-15415701 MsG0180001063.01.T01:exon 30.0%
ATTATAAACTAGGTGACACT+TGG - Chr1:15415962-15415981 None:intergenic 30.0%
CACAATATCACAAACACATA+TGG - Chr1:15419060-15419079 None:intergenic 30.0%
CACTAGTTAAGACCTTTATA+AGG + Chr1:15417572-15417591 MsG0180001063.01.T01:intron 30.0%
CCAAACAAATAAAGTCTGAT+TGG - Chr1:15418725-15418744 None:intergenic 30.0%
CTACAAACTATCAATGACAA+TGG - Chr1:15417156-15417175 None:intergenic 30.0%
CTCAAGTCTCAAAAACAAAT+GGG - Chr1:15417401-15417420 None:intergenic 30.0%
GCAAACTTAGTTTATCTGTA+AGG + Chr1:15419481-15419500 MsG0180001063.01.T01:intron 30.0%
GTATTATTTGGTATGAACAG+TGG - Chr1:15419551-15419570 None:intergenic 30.0%
TCAAATTGAAGTGAAGAAGA+TGG - Chr1:15418170-15418189 None:intergenic 30.0%
TCTCAAGTCTCAAAAACAAA+TGG - Chr1:15417402-15417421 None:intergenic 30.0%
TGAAAACAGCCTATAAGTAT+AGG - Chr1:15416232-15416251 None:intergenic 30.0%
TGATCATTCGAACAACTATA+AGG - Chr1:15417744-15417763 None:intergenic 30.0%
TTAGGACTGTAAATGAAAAG+TGG - Chr1:15419325-15419344 None:intergenic 30.0%
TTAGTTATGGTATGTTTGGT+TGG + Chr1:15420074-15420093 MsG0180001063.01.T01:three_prime_UTR 30.0%
TTATTTCAAACCCCAACATT+TGG + Chr1:15417014-15417033 MsG0180001063.01.T01:intron 30.0%
TTGTGATGATTGTTCAGAAT+CGG - Chr1:15415832-15415851 None:intergenic 30.0%
! ACCAGGTTCTTAATTTTTGT+TGG + Chr1:15420141-15420160 MsG0180001063.01.T01:three_prime_UTR 30.0%
! AGAATATTCCCCTGAATTTT+AGG - Chr1:15417242-15417261 None:intergenic 30.0%
! ATATTGCTACAGCGTTTTAA+GGG - Chr1:15416452-15416471 None:intergenic 30.0%
! CCAATCAGACTTTATTTGTT+TGG + Chr1:15418722-15418741 MsG0180001063.01.T01:intron 30.0%
! GAAATTTTGTTCCTTAAGGA+AGG + Chr1:15417106-15417125 MsG0180001063.01.T01:intron 30.0%
! GGCATACAGGATTTTTAAAT+AGG + Chr1:15416482-15416501 MsG0180001063.01.T01:intron 30.0%
! TATATTGCTACAGCGTTTTA+AGG - Chr1:15416453-15416472 None:intergenic 30.0%
! TTGTAATCTTCCATCCATTT+TGG + Chr1:15417311-15417330 MsG0180001063.01.T01:intron 30.0%
!! CATTCTAGTTCCTAAAATTC+AGG + Chr1:15417229-15417248 MsG0180001063.01.T01:intron 30.0%
!! GATGAACTTAATTTTGGCAA+TGG + Chr1:15418682-15418701 MsG0180001063.01.T01:intron 30.0%
!! TCCGATTTCTAGTAAAACTT+GGG - Chr1:15418429-15418448 None:intergenic 30.0%
!! TTCTAGTTCCTAAAATTCAG+GGG + Chr1:15417231-15417250 MsG0180001063.01.T01:intron 30.0%
!!! GGTTTTAGATTAACTTCTGT+TGG + Chr1:15417035-15417054 MsG0180001063.01.T01:intron 30.0%
AACAAGTGTGCCAATTATTG+TGG + Chr1:15419441-15419460 MsG0180001063.01.T01:intron 35.0%
AACAGAAGAATACCATAGCA+AGG - Chr1:15415887-15415906 None:intergenic 35.0%
AATACGTGTAATCAGTGCAT+TGG + Chr1:15417609-15417628 MsG0180001063.01.T01:intron 35.0%
AATATTAATCCTTGCAGGCT+TGG + Chr1:15419621-15419640 MsG0180001063.01.T01:intron 35.0%
ACACATCATATGACATGACA+TGG - Chr1:15418278-15418297 None:intergenic 35.0%
ACTCAACATGATTCTTCTGA+TGG + Chr1:15415789-15415808 MsG0180001063.01.T01:CDS 35.0%
AGAATGAAAGCCTGTACTTT+CGG - Chr1:15417215-15417234 None:intergenic 35.0%
AGATGCTTGGAATGCTTTAA+AGG + Chr1:15418448-15418467 MsG0180001063.01.T01:CDS 35.0%
ATATTAATCCTTGCAGGCTT+GGG + Chr1:15419622-15419641 MsG0180001063.01.T01:intron 35.0%
CTTGAACAGATTCATGACAA+TGG + Chr1:15416856-15416875 MsG0180001063.01.T01:intron 35.0%
GCCTATAAGTATAGGTTACA+CGG - Chr1:15416224-15416243 None:intergenic 35.0%
GCTTTATATGGCATTACACA+GGG - Chr1:15417888-15417907 None:intergenic 35.0%
GGAATGTATATGTGGAATGA+TGG + Chr1:15419988-15420007 MsG0180001063.01.T01:three_prime_UTR 35.0%
GGGTTCTTAAAAAAGGTTTG+CGG - Chr1:15416611-15416630 None:intergenic 35.0%
GTGATAAATATGGTACTCCT+AGG + Chr1:15420021-15420040 MsG0180001063.01.T01:three_prime_UTR 35.0%
TACCAGTTAGAGTTATCATC+AGG + Chr1:15416012-15416031 MsG0180001063.01.T01:intron 35.0%
TACTGAATTGAAACCATCGT+GGG + Chr1:15418836-15418855 MsG0180001063.01.T01:CDS 35.0%
TCCGTGTAACCTATACTTAT+AGG + Chr1:15416220-15416239 MsG0180001063.01.T01:intron 35.0%
TGCATCAGGGTTCTTAAAAA+AGG - Chr1:15416618-15416637 None:intergenic 35.0%
TGCTTTATATGGCATTACAC+AGG - Chr1:15417889-15417908 None:intergenic 35.0%
TGTAGCAATATAGCAAGTAG+TGG + Chr1:15416461-15416480 MsG0180001063.01.T01:intron 35.0%
TGTCATTGTCAAAAGAACCT+AGG - Chr1:15420041-15420060 None:intergenic 35.0%
TGTGATAAAGAGGGTAAACA+AGG - Chr1:15415729-15415748 None:intergenic 35.0%
TTTAAATCGGAAACACACTG+AGG - Chr1:15417996-15418015 None:intergenic 35.0%
TTTCTTCCTGTTAAATGCTG+TGG - Chr1:15418047-15418066 None:intergenic 35.0%
! GACTTTATTTGTTTGGGGTT+TGG + Chr1:15418729-15418748 MsG0180001063.01.T01:intron 35.0%
! GAGACCTCTTTAATCCTTTT+GGG + Chr1:15417418-15417437 MsG0180001063.01.T01:intron 35.0%
! GCCCAAGTTTTACTAGAAAT+CGG + Chr1:15418425-15418444 MsG0180001063.01.T01:CDS 35.0%
! TGAGACCTCTTTAATCCTTT+TGG + Chr1:15417417-15417436 MsG0180001063.01.T01:intron 35.0%
!! AAGCGAACTTTTGTTACTTG+AGG - Chr1:15417132-15417151 None:intergenic 35.0%
!! ATAGAGAAGCATTGGGTAAA+TGG + Chr1:15418351-15418370 MsG0180001063.01.T01:CDS 35.0%
!! CTCCGATTTCTAGTAAAACT+TGG - Chr1:15418430-15418449 None:intergenic 35.0%
!! TAGAGAAGCATTGGGTAAAT+GGG + Chr1:15418352-15418371 MsG0180001063.01.T01:CDS 35.0%
AAGCAATTGTGACACTGTTC+AGG - Chr1:15416332-15416351 None:intergenic 40.0%
AATACCACCATCTTTGTTGC+AGG + Chr1:15418319-15418338 MsG0180001063.01.T01:intron 40.0%
AATGCATACAACAGCATGCA+TGG - Chr1:15417349-15417368 None:intergenic 40.0%
AGAAAGCAACTTCACTCATC+AGG + Chr1:15419893-15419912 MsG0180001063.01.T01:CDS 40.0%
AGCCTGATGATAACTCTAAC+TGG - Chr1:15416017-15416036 None:intergenic 40.0%
AGGAAGACTCAACAGGAAAT+GGG - Chr1:15417444-15417463 None:intergenic 40.0%
ATACCGCTACACTGAAGTTT+AGG + Chr1:15416637-15416656 MsG0180001063.01.T01:intron 40.0%
ATGCATACAACAGCATGCAT+GGG - Chr1:15417348-15417367 None:intergenic 40.0%
CGATAACAATTGCAGTCACA+TGG + Chr1:15416510-15416529 MsG0180001063.01.T01:intron 40.0%
CTACTGAATTGAAACCATCG+TGG + Chr1:15418835-15418854 MsG0180001063.01.T01:CDS 40.0%
CTTCTTTATTAGACGTGACG+CGG - Chr1:15419873-15419892 None:intergenic 40.0%
GAAAGTGATACGATGCTAAG+AGG - Chr1:15417493-15417512 None:intergenic 40.0%
GATGCTAAGAGGTGGTAAAT+GGG - Chr1:15417482-15417501 None:intergenic 40.0%
TACCGCTACACTGAAGTTTA+GGG + Chr1:15416638-15416657 MsG0180001063.01.T01:intron 40.0%
TACTAGAAATCGGAGATGCT+TGG + Chr1:15418435-15418454 MsG0180001063.01.T01:CDS 40.0%
TATAGCAAGTAGTGGCATAC+AGG + Chr1:15416469-15416488 MsG0180001063.01.T01:intron 40.0%
TCCTGTGCTTCTTCATAATC+AGG - Chr1:15419839-15419858 None:intergenic 40.0%
TCGGTGAAGTGTGATAAAGA+GGG - Chr1:15415738-15415757 None:intergenic 40.0%
TCTTCATGAAGCTTAGCAGT+TGG + Chr1:15419730-15419749 MsG0180001063.01.T01:intron 40.0%
TGCATAGGATTCAAAGAGTG+TGG - Chr1:15416413-15416432 None:intergenic 40.0%
TGGTGGTTCAAAGTTCATAG+AGG - Chr1:15417846-15417865 None:intergenic 40.0%
TGGTTCAAAGTTCATAGAGG+AGG - Chr1:15417843-15417862 None:intergenic 40.0%
TTCAGAATCGGTAGAACGAA+CGG - Chr1:15415820-15415839 None:intergenic 40.0%
TTCCCTAAACTTCAGTGTAG+CGG - Chr1:15416643-15416662 None:intergenic 40.0%
! AAACACACTGAGGTGTTTGT+TGG - Chr1:15417986-15418005 None:intergenic 40.0%
! ACAAGCTTAACCGAAAGTAC+AGG + Chr1:15417202-15417221 MsG0180001063.01.T01:intron 40.0%
! GCATGCTGTTGTATGCATTT+TGG + Chr1:15417350-15417369 MsG0180001063.01.T01:intron 40.0%
! TACGTGCGTTTTCTGTACTT+TGG + Chr1:15416797-15416816 MsG0180001063.01.T01:intron 40.0%
!! GGGAAGTATAGAGAAGCATT+GGG + Chr1:15418344-15418363 MsG0180001063.01.T01:CDS 40.0%
!! GTCTTCCTGATTCACTTTTC+TGG + Chr1:15417456-15417475 MsG0180001063.01.T01:intron 40.0%
AAATGTTAACCAGTGCCCCT+GGG + Chr1:15417548-15417567 MsG0180001063.01.T01:intron 45.0%
AACACAACCGTGTGATGTCA+AGG - Chr1:15416540-15416559 None:intergenic 45.0%
ACACGGTTGTGTTGTGCTTT+CGG + Chr1:15416547-15416566 MsG0180001063.01.T01:intron 45.0%
AGAGTTATCATCAGGCTCGT+TGG + Chr1:15416020-15416039 MsG0180001063.01.T01:intron 45.0%
AGTGATACGATGCTAAGAGG+TGG - Chr1:15417490-15417509 None:intergenic 45.0%
ATGGGAAGCTGCTCTTACAT+TGG + Chr1:15418370-15418389 MsG0180001063.01.T01:CDS 45.0%
ATGGGCCAGAAAAGTGAATC+AGG - Chr1:15417464-15417483 None:intergenic 45.0%
CAGGAAGACTCAACAGGAAA+TGG - Chr1:15417445-15417464 None:intergenic 45.0%
CAGTGAAGAAGAGAAGAGGT+AGG + Chr1:15415662-15415681 MsG0180001063.01.T01:five_prime_UTR 45.0%
CGATGCTAAGAGGTGGTAAA+TGG - Chr1:15417483-15417502 None:intergenic 45.0%
CGTTGTCTTGCTCAAAAGGA+AGG - Chr1:15415761-15415780 None:intergenic 45.0%
GAGGAAGATGCCAAAATGGA+TGG - Chr1:15417324-15417343 None:intergenic 45.0%
GAGTTATCATCAGGCTCGTT+GGG + Chr1:15416021-15416040 MsG0180001063.01.T01:intron 45.0%
GATAATTGACGGTCTCTGCA+TGG + Chr1:15418806-15418825 MsG0180001063.01.T01:intron 45.0%
GCTACGCAGTTTCAAACTCA+AGG + Chr1:15415855-15415874 MsG0180001063.01.T01:CDS 45.0%
GGAACAGTGAAGAAGAGAAG+AGG + Chr1:15415658-15415677 MsG0180001063.01.T01:five_prime_UTR 45.0%
GTCGGTGAAGTGTGATAAAG+AGG - Chr1:15415739-15415758 None:intergenic 45.0%
GTCTTGCTCAAAAGGAAGGT+CGG - Chr1:15415757-15415776 None:intergenic 45.0%
GTGAATCAGGAAGACTCAAC+AGG - Chr1:15417451-15417470 None:intergenic 45.0%
GTGTGCCAATTATTGTGGCA+CGG + Chr1:15419446-15419465 MsG0180001063.01.T01:intron 45.0%
GTTACTTGAGGCCTTCCTTA+AGG - Chr1:15417120-15417139 None:intergenic 45.0%
TCAAGGAGACAACCTTGCTA+TGG + Chr1:15415872-15415891 MsG0180001063.01.T01:CDS 45.0%
TCATGCAAAGCTGGAACATC+AGG - Chr1:15418398-15418417 None:intergenic 45.0%
TCCAGCTTTGCATGAACAGA+AGG + Chr1:15418403-15418422 MsG0180001063.01.T01:CDS 45.0%
TGGGCCCAAAAGGATTAAAG+AGG - Chr1:15417425-15417444 None:intergenic 45.0%
TGGTGATCCTTGACATCACA+CGG + Chr1:15416530-15416549 MsG0180001063.01.T01:intron 45.0%
TGGTGTACTCGTTACTCGTT+AGG - Chr1:15419343-15419362 None:intergenic 45.0%
! GCCTGATTATGAAGAAGCAC+AGG + Chr1:15419835-15419854 MsG0180001063.01.T01:intron 45.0%
! GGGGAAGTATAGAGAAGCAT+TGG + Chr1:15418343-15418362 MsG0180001063.01.T01:CDS 45.0%
! GTGTCGTTGTCTTGCTCAAA+AGG - Chr1:15415765-15415784 None:intergenic 45.0%
!! AGAATCCTTAAAGAGTGCCC+CGG + Chr1:15417675-15417694 MsG0180001063.01.T01:intron 45.0%
!! TGACAGAGCTTTAGCTCTCA+AGG + Chr1:15419703-15419722 MsG0180001063.01.T01:CDS 45.0%
!!! TGCTACAGCGTTTTAAGGGT+AGG - Chr1:15416448-15416467 None:intergenic 45.0%
AAGGTCTTAACTAGTGCCCC+AGG - Chr1:15417568-15417587 None:intergenic 50.0%
AATGTTAACCAGTGCCCCTG+GGG + Chr1:15417549-15417568 MsG0180001063.01.T01:intron 50.0%
ACCACCATCTTTGTTGCAGG+AGG + Chr1:15418322-15418341 MsG0180001063.01.T01:intron 50.0%
AGGTCTTAACTAGTGCCCCA+GGG - Chr1:15417567-15417586 None:intergenic 50.0%
CAACAGGAAATGGGCCCAAA+AGG - Chr1:15417435-15417454 None:intergenic 50.0%
CACCATCTTTGTTGCAGGAG+GGG + Chr1:15418324-15418343 MsG0180001063.01.T01:intron 50.0%
CAGTGTAGCGGTATGCATCA+GGG - Chr1:15416631-15416650 None:intergenic 50.0%
CCACCACCACGAAATCGATA+TGG + Chr1:15417860-15417879 MsG0180001063.01.T01:intron 50.0%
CCACCATCTTTGTTGCAGGA+GGG + Chr1:15418323-15418342 MsG0180001063.01.T01:intron 50.0%
CTGTGCTCTGCAGTTTCACT+AGG + Chr1:15417375-15417394 MsG0180001063.01.T01:intron 50.0%
GAAATGTTAACCAGTGCCCC+TGG + Chr1:15417547-15417566 MsG0180001063.01.T01:intron 50.0%
GCCAATTATTGTGGCACGGA+GGG + Chr1:15419450-15419469 MsG0180001063.01.T01:intron 50.0%
GCCTTCTGTTCATGCAAAGC+TGG - Chr1:15418407-15418426 None:intergenic 50.0%
GGCATGCCACAGCATTTAAC+AGG + Chr1:15418038-15418057 MsG0180001063.01.T01:intron 50.0%
GGGAGAGGAAGATGCCAAAA+TGG - Chr1:15417328-15417347 None:intergenic 50.0%
TACAACAGCATGCATGGGAG+AGG - Chr1:15417343-15417362 None:intergenic 50.0%
TCAGTGTAGCGGTATGCATC+AGG - Chr1:15416632-15416651 None:intergenic 50.0%
TCCCTCCGTGCCACAATAAT+TGG - Chr1:15419454-15419473 None:intergenic 50.0%
TCTTGTTAACGAGTACCCCC+GGG - Chr1:15417696-15417715 None:intergenic 50.0%
TGCCAATTATTGTGGCACGG+AGG + Chr1:15419449-15419468 MsG0180001063.01.T01:intron 50.0%
TTAGGAGTGAGCGATGCACA+TGG - Chr1:15419291-15419310 None:intergenic 50.0%
TTCCCCTCCTGCAACAAAGA+TGG - Chr1:15418329-15418348 None:intergenic 50.0%
TTGTTTCACAGCCCAGTTCG+CGG + Chr1:15416585-15416604 MsG0180001063.01.T01:intron 50.0%
! AGGCTGCTACTTGACTGCAT+AGG - Chr1:15416428-15416447 None:intergenic 50.0%
! ATTGAAACCATCGTGGGCTG+AGG + Chr1:15418842-15418861 MsG0180001063.01.T01:CDS 50.0%
! GTCTTGTTAACGAGTACCCC+CGG - Chr1:15417697-15417716 None:intergenic 50.0%
!! AATCCTTAAAGAGTGCCCCG+GGG + Chr1:15417677-15417696 MsG0180001063.01.T01:intron 50.0%
!! AGGGTGCCATATCGATTTCG+TGG - Chr1:15417869-15417888 None:intergenic 50.0%
!! CCATATCGATTTCGTGGTGG+TGG - Chr1:15417863-15417882 None:intergenic 50.0%
!! GAATCCTTAAAGAGTGCCCC+GGG + Chr1:15417676-15417695 MsG0180001063.01.T01:intron 50.0%
!! GTGCCATATCGATTTCGTGG+TGG - Chr1:15417866-15417885 None:intergenic 50.0%
AAGTGTGACCCAAGCCTGCA+AGG - Chr1:15419633-15419652 None:intergenic 55.0%
ATTGACGGTCTCTGCATGGC+AGG + Chr1:15418810-15418829 MsG0180001063.01.T01:intron 55.0%
CCCTCCTGCAACAAAGATGG+TGG - Chr1:15418326-15418345 None:intergenic 55.0%
CTTGTTAACGAGTACCCCCG+GGG - Chr1:15417695-15417714 None:intergenic 55.0%
GGCAGAGCGCAGCTGAATTA+TGG + Chr1:15419653-15419672 MsG0180001063.01.T01:CDS 55.0%
GGCTCGTTGGGTAGTTCAAC+TGG + Chr1:15416033-15416052 MsG0180001063.01.T01:intron 55.0%
GGTCTTAACTAGTGCCCCAG+GGG - Chr1:15417566-15417585 None:intergenic 55.0%
TTGCAGGCTTGGGTCACACT+TGG + Chr1:15419632-15419651 MsG0180001063.01.T01:intron 55.0%
!! ATCCTTAAAGAGTGCCCCGG+GGG + Chr1:15417678-15417697 MsG0180001063.01.T01:intron 55.0%
AAAGGTTTGCGGCCGCGAAC+TGG - Chr1:15416600-15416619 None:intergenic 60.0%
AAGGTTTGCGGCCGCGAACT+GGG - Chr1:15416599-15416618 None:intergenic 60.0%
TGTCGTACCTCAGCCCACGA+TGG - Chr1:15418852-15418871 None:intergenic 60.0%
! TACCCCCGGGGCACTCTTTA+AGG - Chr1:15417683-15417702 None:intergenic 60.0%
! AACTAGTGCCCCAGGGGCAC+TGG - Chr1:15417560-15417579 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 15415621 15420238 15415621 ID=MsG0180001063.01;Name=MsG0180001063.01
Chr1 mRNA 15415621 15420238 15415621 ID=MsG0180001063.01.T01;Parent=MsG0180001063.01;Name=MsG0180001063.01.T01;_AED=0.45;_eAED=0.45;_QI=69|1|1|1|1|1|5|268|198
Chr1 exon 15415621 15415893 15415621 ID=MsG0180001063.01.T01:exon:4788;Parent=MsG0180001063.01.T01
Chr1 exon 15418341 15418479 15418341 ID=MsG0180001063.01.T01:exon:4789;Parent=MsG0180001063.01.T01
Chr1 exon 15418832 15418863 15418832 ID=MsG0180001063.01.T01:exon:4790;Parent=MsG0180001063.01.T01
Chr1 exon 15419638 15419724 15419638 ID=MsG0180001063.01.T01:exon:4791;Parent=MsG0180001063.01.T01
Chr1 exon 15419836 15420238 15419836 ID=MsG0180001063.01.T01:exon:4792;Parent=MsG0180001063.01.T01
Chr1 five_prime_UTR 15415621 15415689 15415621 ID=MsG0180001063.01.T01:five_prime_utr;Parent=MsG0180001063.01.T01
Chr1 CDS 15415690 15415893 15415690 ID=MsG0180001063.01.T01:cds;Parent=MsG0180001063.01.T01
Chr1 CDS 15418341 15418479 15418341 ID=MsG0180001063.01.T01:cds;Parent=MsG0180001063.01.T01
Chr1 CDS 15418832 15418863 15418832 ID=MsG0180001063.01.T01:cds;Parent=MsG0180001063.01.T01
Chr1 CDS 15419638 15419724 15419638 ID=MsG0180001063.01.T01:cds;Parent=MsG0180001063.01.T01
Chr1 CDS 15419836 15419970 15419836 ID=MsG0180001063.01.T01:cds;Parent=MsG0180001063.01.T01
Chr1 three_prime_UTR 15419971 15420238 15419971 ID=MsG0180001063.01.T01:three_prime_utr;Parent=MsG0180001063.01.T01
Gene Sequence

>MsG0180001063.01.T01

ATGAAAGTAACATGGAAGAACACGAAGAAGAAGAAACCTTGTTTACCCTCTTTATCACACTTCACCGACCTTCCTTTTGAGCAAGACAACGACACTACTACTCAACATGATTCTTCTGATGGAACAACCGTTCGTTCTACCGATTCTGAACAATCATCACAATTAGCTACGCAGTTTCAAACTCAAGGAGACAACCTTGCTATGGAGGGGAAGTATAGAGAAGCATTGGGTAAATGGGAAGCTGCTCTTACATTGGCACCTGATGTTCCAGCTTTGCATGAACAGAAGGCCCAAGTTTTACTAGAAATCGGAGATGCTTGGAATGCTTTAAAGGCTGCAAGTCGAGCTACTGAATTGAAACCATCGTGGGCTGAGGCTTGGGTCACACTTGGCAGAGCGCAGCTGAATTATGGCGAGCCAGATAATGCTATTGAAAGCTTTGACAGAGCTTTAGCTCTCAAGCCTGATTATGAAGAAGCACAGGATGATAGAAAAACCGCGTCACGTCTAATAAAGAAGAGAAAGCAACTTCACTCATCAGGATTAAGTGAAATTCAAAATGGTTATACTGTAGGTGATAAGAATGAAAGCTCATGA

Protein sequence

>MsG0180001063.01.T01

MKVTWKNTKKKKPCLPSLSHFTDLPFEQDNDTTTQHDSSDGTTVRSTDSEQSSQLATQFQTQGDNLAMEGKYREALGKWEAALTLAPDVPALHEQKAQVLLEIGDAWNALKAASRATELKPSWAEAWVTLGRAQLNYGEPDNAIESFDRALALKPDYEEAQDDRKTASRLIKKRKQLHSSGLSEIQNGYTVGDKNESS*