Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041303.01.T01 | XP_003625919.2 | 85.135 | 296 | 6 | 2 | 5 | 267 | 51 | 341 | 3.31E-178 | 504 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041303.01.T01 | Q9C942 | 36.957 | 230 | 111 | 3 | 15 | 210 | 93 | 322 | 1.08E-43 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041303.01.T01 | G7KRW6 | 85.135 | 296 | 6 | 2 | 5 | 267 | 51 | 341 | 1.58e-178 | 504 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180003955.01 | MsG0780041303.01 | 0.817534 | 3.137584e-52 | 2.290961e-49 |
| MsG0180004027.01 | MsG0780041303.01 | 0.808316 | 3.288061e-50 | 1.874092e-47 |
| MsG0180004510.01 | MsG0780041303.01 | 0.826915 | 2.087451e-54 | 1.984764e-51 |
| MsG0180005757.01 | MsG0780041303.01 | 0.808235 | 3.421931e-50 | 1.946209e-47 |
| MsG0180006026.01 | MsG0780041303.01 | 0.835272 | 1.848056e-56 | 2.248944e-53 |
| MsG0180006182.01 | MsG0780041303.01 | 0.824433 | 8.093673e-54 | 7.167546e-51 |
| MsG0180006191.01 | MsG0780041303.01 | 0.813359 | 2.663763e-51 | 1.735890e-48 |
| MsG0780040878.01 | MsG0780041303.01 | 0.809874 | 1.524980e-50 | 9.057595e-48 |
| MsG0780041180.01 | MsG0780041303.01 | 0.800367 | 1.490110e-48 | 6.926016e-46 |
| MsG0780041303.01 | MsG0880046137.01 | 0.831323 | 1.781406e-55 | 1.926529e-52 |
| MsG0380013041.01 | MsG0780041303.01 | 0.828184 | 1.035230e-54 | 1.021411e-51 |
| MsG0680031686.01 | MsG0780041303.01 | 0.801462 | 8.904568e-49 | 4.254981e-46 |
| MsG0480023322.01 | MsG0780041303.01 | 0.800290 | 1.545004e-48 | 7.167102e-46 |
| MsG0580025822.01 | MsG0780041303.01 | 0.810803 | 9.611146e-51 | 5.850239e-48 |
| MsG0380017898.01 | MsG0780041303.01 | 0.809569 | 1.773429e-50 | 1.044898e-47 |
| MsG0580030179.01 | MsG0780041303.01 | 0.817355 | 3.441936e-52 | 2.500893e-49 |
| MsG0280006884.01 | MsG0780041303.01 | 0.813352 | 2.673068e-51 | 1.741591e-48 |
| MsG0280007686.01 | MsG0780041303.01 | 0.824063 | 9.886132e-54 | 8.663632e-51 |
| MsG0280010240.01 | MsG0780041303.01 | 0.807018 | 6.203185e-50 | 3.417544e-47 |
| MsG0780038810.01 | MsG0780041303.01 | 0.828227 | 1.010903e-54 | 9.986453e-52 |
| MsG0780039916.01 | MsG0780041303.01 | 0.811435 | 7.009854e-51 | 4.339002e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041303.01.T01 | MTR_7g108770 | 85.135 | 296 | 6 | 2 | 5 | 267 | 51 | 341 | 0.0 | 504 |
| MsG0780041303.01.T01 | MTR_1g088470 | 61.923 | 260 | 65 | 2 | 5 | 230 | 52 | 311 | 7.55e-111 | 323 |
| MsG0780041303.01.T01 | MTR_1g115535 | 48.305 | 236 | 89 | 1 | 9 | 211 | 58 | 293 | 1.37e-78 | 240 |
| MsG0780041303.01.T01 | MTR_1g115535 | 48.305 | 236 | 89 | 1 | 9 | 211 | 62 | 297 | 1.66e-78 | 240 |
| MsG0780041303.01.T01 | MTR_6g018490 | 43.882 | 237 | 100 | 1 | 9 | 212 | 102 | 338 | 1.76e-65 | 207 |
| MsG0780041303.01.T01 | MTR_6g025610 | 43.882 | 237 | 100 | 1 | 9 | 212 | 92 | 328 | 3.00e-65 | 207 |
| MsG0780041303.01.T01 | MTR_5g056550 | 46.269 | 201 | 108 | 0 | 9 | 209 | 156 | 356 | 8.80e-64 | 204 |
| MsG0780041303.01.T01 | MTR_7g007260 | 41.277 | 235 | 105 | 1 | 9 | 210 | 103 | 337 | 2.32e-62 | 200 |
| MsG0780041303.01.T01 | MTR_1g110670 | 40.171 | 234 | 107 | 1 | 9 | 209 | 122 | 355 | 2.42e-61 | 197 |
| MsG0780041303.01.T01 | MTR_5g056550 | 40.171 | 234 | 107 | 1 | 9 | 209 | 156 | 389 | 3.16e-58 | 191 |
| MsG0780041303.01.T01 | MTR_6g084420 | 39.583 | 240 | 111 | 2 | 9 | 214 | 102 | 341 | 7.52e-57 | 186 |
| MsG0780041303.01.T01 | MTR_4g089170 | 42.128 | 235 | 103 | 3 | 8 | 209 | 87 | 321 | 1.71e-55 | 181 |
| MsG0780041303.01.T01 | MTR_7g007260 | 37.447 | 235 | 101 | 2 | 9 | 210 | 103 | 324 | 2.80e-50 | 168 |
| MsG0780041303.01.T01 | MTR_7g007260 | 37.288 | 236 | 101 | 3 | 9 | 210 | 103 | 325 | 4.11e-49 | 165 |
| MsG0780041303.01.T01 | MTR_1g095110 | 36.437 | 247 | 120 | 5 | 7 | 218 | 78 | 322 | 1.35e-46 | 158 |
| MsG0780041303.01.T01 | MTR_4g127220 | 34.599 | 237 | 121 | 3 | 8 | 210 | 77 | 313 | 4.48e-42 | 147 |
| MsG0780041303.01.T01 | MTR_5g056550 | 42.157 | 102 | 57 | 1 | 9 | 110 | 156 | 255 | 2.11e-21 | 91.3 |
| MsG0780041303.01.T01 | MTR_6g071475 | 31.140 | 228 | 118 | 7 | 15 | 209 | 167 | 388 | 2.14e-21 | 92.8 |
| MsG0780041303.01.T01 | MTR_5g056550 | 43.333 | 90 | 51 | 0 | 9 | 98 | 156 | 245 | 2.64e-20 | 87.8 |
| MsG0780041303.01.T01 | MTR_1g110680 | 50.794 | 63 | 31 | 0 | 147 | 209 | 40 | 102 | 3.02e-15 | 70.5 |
| MsG0780041303.01.T01 | MTR_3g109870 | 28.502 | 207 | 103 | 8 | 41 | 211 | 157 | 354 | 1.44e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041303.01.T01 | AT3G62860 | 57.912 | 297 | 89 | 3 | 5 | 266 | 9 | 304 | 1.67e-124 | 357 |
| MsG0780041303.01.T01 | AT3G62860 | 57.912 | 297 | 89 | 3 | 5 | 266 | 52 | 347 | 2.08e-123 | 355 |
| MsG0780041303.01.T01 | AT2G47630 | 56.856 | 299 | 88 | 3 | 5 | 265 | 9 | 304 | 2.09e-118 | 341 |
| MsG0780041303.01.T01 | AT2G47630 | 56.856 | 299 | 88 | 3 | 5 | 265 | 29 | 324 | 2.41e-118 | 342 |
| MsG0780041303.01.T01 | AT2G47630 | 56.856 | 299 | 88 | 3 | 5 | 265 | 54 | 349 | 1.75e-117 | 340 |
| MsG0780041303.01.T01 | AT2G39420 | 53.191 | 235 | 77 | 1 | 9 | 210 | 59 | 293 | 2.75e-82 | 250 |
| MsG0780041303.01.T01 | AT3G55180 | 50.617 | 243 | 87 | 1 | 4 | 213 | 49 | 291 | 3.73e-81 | 247 |
| MsG0780041303.01.T01 | AT2G39410 | 48.739 | 238 | 89 | 1 | 9 | 213 | 59 | 296 | 5.47e-78 | 239 |
| MsG0780041303.01.T01 | AT2G39400 | 48.971 | 243 | 91 | 1 | 6 | 215 | 50 | 292 | 1.95e-77 | 237 |
| MsG0780041303.01.T01 | AT3G55190 | 41.353 | 266 | 116 | 3 | 9 | 240 | 59 | 318 | 2.04e-66 | 209 |
| MsG0780041303.01.T01 | AT1G11090 | 42.979 | 235 | 101 | 2 | 8 | 209 | 78 | 312 | 1.06e-61 | 197 |
| MsG0780041303.01.T01 | AT5G16120 | 41.250 | 240 | 108 | 1 | 9 | 215 | 104 | 343 | 1.15e-60 | 196 |
| MsG0780041303.01.T01 | AT5G16120 | 41.250 | 240 | 108 | 1 | 9 | 215 | 104 | 343 | 1.15e-60 | 196 |
| MsG0780041303.01.T01 | AT5G16120 | 41.250 | 240 | 108 | 1 | 9 | 215 | 122 | 361 | 2.48e-60 | 195 |
| MsG0780041303.01.T01 | AT5G16120 | 41.250 | 240 | 108 | 1 | 9 | 215 | 136 | 375 | 2.81e-60 | 196 |
| MsG0780041303.01.T01 | AT1G77420 | 37.395 | 238 | 116 | 1 | 9 | 213 | 143 | 380 | 4.46e-54 | 179 |
| MsG0780041303.01.T01 | AT2G39400 | 56.522 | 138 | 60 | 0 | 7 | 144 | 51 | 188 | 2.26e-51 | 168 |
| MsG0780041303.01.T01 | AT5G14980 | 35.319 | 235 | 117 | 3 | 8 | 208 | 79 | 312 | 2.50e-45 | 155 |
| MsG0780041303.01.T01 | AT1G52760 | 36.957 | 230 | 111 | 3 | 15 | 210 | 93 | 322 | 1.10e-44 | 154 |
| MsG0780041303.01.T01 | AT5G19290 | 31.687 | 243 | 131 | 3 | 8 | 216 | 80 | 321 | 1.65e-40 | 143 |
| MsG0780041303.01.T01 | AT1G18360 | 29.412 | 238 | 125 | 6 | 9 | 211 | 152 | 381 | 2.27e-22 | 95.5 |
| MsG0780041303.01.T01 | AT1G73480 | 28.870 | 239 | 125 | 7 | 9 | 211 | 233 | 462 | 3.12e-22 | 95.9 |
Find 49 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAATGCCCTGCTTACTTC+TGG | 0.212230 | 7:+89395046 | None:intergenic |
| TTCAGTTCTCCAAGAGTATA+AGG | 0.225869 | 7:-89396485 | MsG0780041303.01.T01:intron |
| TACACCATACACAGCATATT+TGG | 0.251718 | 7:+89396690 | None:intergenic |
| AAACCTCACCCTTTCTCGTT+TGG | 0.334146 | 7:+89396056 | None:intergenic |
| TCGTTTGGCCGGATCTTTGA+AGG | 0.412045 | 7:+89396071 | None:intergenic |
| GTTAAACCATGCCACATTCC+AGG | 0.412914 | 7:+89394983 | None:intergenic |
| TCAGTTCTCCAAGAGTATAA+GGG | 0.415803 | 7:-89396484 | MsG0780041303.01.T01:intron |
| ATAATGCCCTGCTTACTTCT+GGG | 0.425265 | 7:+89395047 | None:intergenic |
| TCATGGTTACAAGTCTCAAT+TGG | 0.427472 | 7:+89394863 | None:intergenic |
| CCTTGTCGCGCCCATGTGTA+AGG | 0.433319 | 7:-89396371 | MsG0780041303.01.T01:intron |
| AAAATTGATGACATCCTTTG+TGG | 0.443208 | 7:+89396095 | None:intergenic |
| AGACTATGAAACAATCTCAT+AGG | 0.443501 | 7:-89394805 | MsG0780041303.01.T01:CDS |
| GTTCTTGTATGGAGAGTCCA+TGG | 0.446963 | 7:-89396452 | MsG0780041303.01.T01:CDS |
| AATTGGATGTGTAGAATCAT+AGG | 0.453394 | 7:+89394880 | None:intergenic |
| CTCACCCTTTCTCGTTTGGC+CGG | 0.464749 | 7:+89396060 | None:intergenic |
| GGAAAAGCTAGGTTCTTGTA+TGG | 0.474126 | 7:-89396463 | MsG0780041303.01.T01:CDS |
| AAGATCCGGCCAAACGAGAA+AGG | 0.479104 | 7:-89396065 | MsG0780041303.01.T01:CDS |
| AGTTATCTTTGTGGCTTGAA+AGG | 0.484287 | 7:-89394776 | MsG0780041303.01.T01:CDS |
| TGACAGACCCAGAAGTAAGC+AGG | 0.496194 | 7:-89395054 | MsG0780041303.01.T01:CDS |
| GTCTTTGCTGATGATACAAC+TGG | 0.500765 | 7:+89394824 | None:intergenic |
| AGAATCATAGGCAGCATTGT+TGG | 0.502217 | 7:+89394892 | None:intergenic |
| GTGGGAACTATCTTCCACTT+TGG | 0.507430 | 7:+89396114 | None:intergenic |
| ATGTGGCATGGTTTAACATC+TGG | 0.519462 | 7:-89394977 | MsG0780041303.01.T01:CDS |
| AGATCCGGCCAAACGAGAAA+GGG | 0.539898 | 7:-89396064 | MsG0780041303.01.T01:intron |
| AAATTGATGACATCCTTTGT+GGG | 0.543046 | 7:+89396096 | None:intergenic |
| TTAAACCATGCCACATTCCA+GGG | 0.567753 | 7:+89394984 | None:intergenic |
| TACAACGTGTACCTTACACA+TGG | 0.570866 | 7:+89396360 | None:intergenic |
| GACAGACCCAGAAGTAAGCA+GGG | 0.576720 | 7:-89395053 | MsG0780041303.01.T01:CDS |
| TGTGCCAAATATGCTGTGTA+TGG | 0.584688 | 7:-89396694 | MsG0780041303.01.T01:CDS |
| AAGAGTATAAGGGAAAAGCT+AGG | 0.585965 | 7:-89396474 | MsG0780041303.01.T01:CDS |
| TAGACTAACTGCTCCACCCA+TGG | 0.587925 | 7:+89396435 | None:intergenic |
| TTTCATTCTAATTTGCTGAG+TGG | 0.595665 | 7:+89394738 | None:intergenic |
| CCTTACACATGGGCGCGACA+AGG | 0.597684 | 7:+89396371 | None:intergenic |
| TTCTTGTATGGAGAGTCCAT+GGG | 0.602502 | 7:-89396451 | MsG0780041303.01.T01:CDS |
| GAAGGACATGGACAATCTGA+AGG | 0.609980 | 7:-89396661 | MsG0780041303.01.T01:CDS |
| TTGTATGGAGAGTCCATGGG+TGG | 0.611978 | 7:-89396448 | MsG0780041303.01.T01:CDS |
| TTGAAGATATCATACCAAAG+TGG | 0.612746 | 7:-89396128 | MsG0780041303.01.T01:CDS |
| TTAAATTGTACCCTGGAATG+TGG | 0.615904 | 7:-89394994 | MsG0780041303.01.T01:CDS |
| ACAACGTGTACCTTACACAT+GGG | 0.623130 | 7:+89396361 | None:intergenic |
| TCAATATGTTGATGACAACT+TGG | 0.624135 | 7:+89396157 | None:intergenic |
| GTGTCAATGTCTCATTGTCA+TGG | 0.624411 | 7:+89394846 | None:intergenic |
| AAGACAATTAAATTGTACCC+TGG | 0.629319 | 7:-89395001 | MsG0780041303.01.T01:CDS |
| GTGTATGGTGTAGATTATGA+AGG | 0.634571 | 7:-89396679 | MsG0780041303.01.T01:CDS |
| GGTGTAGATTATGAAGGACA+TGG | 0.638840 | 7:-89396673 | MsG0780041303.01.T01:CDS |
| TTGTACCCTGGAATGTGGCA+TGG | 0.642467 | 7:-89394989 | MsG0780041303.01.T01:CDS |
| ATGATGGGTACTACAGAATG+TGG | 0.653378 | 7:-89396730 | MsG0780041303.01.T01:CDS |
| GTGGAAGATAGTTCCCACAA+AGG | 0.681811 | 7:-89396109 | MsG0780041303.01.T01:CDS |
| ATGTTGATGACAACTTGGTG+TGG | 0.690265 | 7:+89396162 | None:intergenic |
| GTACTACAGAATGTGGAGTG+CGG | 0.724286 | 7:-89396723 | MsG0780041303.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTAATCTATAATTG+AGG | - | Chr7:89395471-89395490 | MsG0780041303.01.T01:intron | 10.0% |
| !! | ATATGGATTTATAATTAACT+TGG | + | Chr7:89395207-89395226 | None:intergenic | 15.0% |
| !! | TAAACAATTTAACGTTTATT+TGG | + | Chr7:89396224-89396243 | None:intergenic | 15.0% |
| !!! | TTTTCTAAACAAAAAGTATA+TGG | + | Chr7:89395224-89395243 | None:intergenic | 15.0% |
| !! | AAAATCAATCCTATTCAAAA+AGG | + | Chr7:89396034-89396053 | None:intergenic | 20.0% |
| !! | AATGAATGATGAAACTATAA+TGG | + | Chr7:89394956-89394975 | None:intergenic | 20.0% |
| !! | CATATCATACCTAATTTATT+TGG | - | Chr7:89396328-89396347 | MsG0780041303.01.T01:intron | 20.0% |
| !! | CTAAAGTAAACATGAAAATA+TGG | - | Chr7:89395252-89395271 | MsG0780041303.01.T01:intron | 20.0% |
| !! | GTAAAAAATCTTTACATTAC+AGG | - | Chr7:89395173-89395192 | MsG0780041303.01.T01:intron | 20.0% |
| !!! | ACTTATTTCTATAAATTCTC+CGG | - | Chr7:89395840-89395859 | MsG0780041303.01.T01:intron | 20.0% |
| !!! | ACTTATTTGAACTTTTTTTG+AGG | - | Chr7:89395726-89395745 | MsG0780041303.01.T01:intron | 20.0% |
| !!! | ATAATCAAGTTACCTTTTTT+CGG | - | Chr7:89396257-89396276 | MsG0780041303.01.T01:intron | 20.0% |
| !!! | ATCACTTTTAGTTTTTGTTA+CGG | - | Chr7:89396193-89396212 | MsG0780041303.01.T01:intron | 20.0% |
| !!! | CAAATTGTTTTTCTTTTAAC+CGG | - | Chr7:89396005-89396024 | MsG0780041303.01.T01:intron | 20.0% |
| !!! | CTTATTTGAACTTTTTTTGA+GGG | - | Chr7:89395727-89395746 | MsG0780041303.01.T01:intron | 20.0% |
| !!! | GTGTTAATTTGAATATTTGT+TGG | + | Chr7:89396287-89396306 | None:intergenic | 20.0% |
| ! | AATGTGAATCACTTTATGTT+TGG | + | Chr7:89396169-89396188 | None:intergenic | 25.0% |
| ! | ACCTAATTTATTTGGTACTT+TGG | - | Chr7:89396336-89396355 | MsG0780041303.01.T01:intron | 25.0% |
| ! | ATGCAATACAAAAAATGGAA+AGG | + | Chr7:89396382-89396401 | None:intergenic | 25.0% |
| ! | CCTAATTTATTTGGTACTTT+GGG | - | Chr7:89396337-89396356 | MsG0780041303.01.T01:intron | 25.0% |
| ! | CGGTTAAAAGAAAAACAATT+TGG | + | Chr7:89396007-89396026 | None:intergenic | 25.0% |
| ! | GGCTAAAAATCAAAATTTAG+AGG | + | Chr7:89396103-89396122 | None:intergenic | 25.0% |
| ! | TTCAGATATATTTACGAGAA+AGG | + | Chr7:89395449-89395468 | None:intergenic | 25.0% |
| !! | AAGTTAGAATCAATTTTGGA+AGG | + | Chr7:89396057-89396076 | None:intergenic | 25.0% |
| !!! | CTTATTTCTATAAATTCTCC+GGG | - | Chr7:89395841-89395860 | MsG0780041303.01.T01:intron | 25.0% |
| !!! | CTTCAAGTTAGAATCAATTT+TGG | + | Chr7:89396061-89396080 | None:intergenic | 25.0% |
| !!! | GTGTATGTTTGTTTCTATTT+TGG | - | Chr7:89395975-89395994 | MsG0780041303.01.T01:intron | 25.0% |
| !!! | TATGTTTGTTTCTATTTTGG+AGG | - | Chr7:89395978-89395997 | MsG0780041303.01.T01:intron | 25.0% |
| !!! | TTTCCATTTTTTGTATTGCA+TGG | - | Chr7:89396381-89396400 | MsG0780041303.01.T01:CDS | 25.0% |
| !!! | TTTTTGAAGACATCATAACA+TGG | - | Chr7:89396544-89396563 | MsG0780041303.01.T01:intron | 25.0% |
| AAGACAATTAAATTGTACCC+TGG | - | Chr7:89396471-89396490 | MsG0780041303.01.T01:CDS | 30.0% | |
| AATTGGATGTGTAGAATCAT+AGG | + | Chr7:89396595-89396614 | None:intergenic | 30.0% | |
| AATTTATTTGGTACTTTGGG+TGG | - | Chr7:89396340-89396359 | MsG0780041303.01.T01:intron | 30.0% | |
| AGACTATGAAACAATCTCAT+AGG | - | Chr7:89396667-89396686 | MsG0780041303.01.T01:CDS | 30.0% | |
| TACACTCAAAAGATTAGACA+AGG | + | Chr7:89394922-89394941 | None:intergenic | 30.0% | |
| TCTCCATGCAATACAAAAAA+TGG | + | Chr7:89396387-89396406 | None:intergenic | 30.0% | |
| TGCATAGTTAACCTTGTATA+AGG | + | Chr7:89395660-89395679 | None:intergenic | 30.0% | |
| TTGAAGATATCATACCAAAG+TGG | - | Chr7:89395344-89395363 | MsG0780041303.01.T01:intron | 30.0% | |
| ! | AAAATTGATGACATCCTTTG+TGG | + | Chr7:89395380-89395399 | None:intergenic | 30.0% |
| ! | AAATTGATGACATCCTTTGT+GGG | + | Chr7:89395379-89395398 | None:intergenic | 30.0% |
| ! | CCCAAAGTACCAAATAAATT+AGG | + | Chr7:89396340-89396359 | None:intergenic | 30.0% |
| ! | TGAGTTGAACAAGAAAATTG+AGG | + | Chr7:89396124-89396143 | None:intergenic | 30.0% |
| !! | GAAAAACAAGTTGATATACC+AGG | - | Chr7:89395574-89395593 | MsG0780041303.01.T01:intron | 30.0% |
| !! | TAGTCTACTTTTGCATCAAA+AGG | - | Chr7:89395053-89395072 | MsG0780041303.01.T01:CDS | 30.0% |
| !! | TCAATATGTTGATGACAACT+TGG | + | Chr7:89395318-89395337 | None:intergenic | 30.0% |
| !!! | ACTTTTTCAATGTTGTCATC+TGG | + | Chr7:89396525-89396544 | None:intergenic | 30.0% |
| AGGCGAAAAAGTTATCTTTG+TGG | - | Chr7:89396687-89396706 | MsG0780041303.01.T01:CDS | 35.0% | |
| AGTTATCTTTGTGGCTTGAA+AGG | - | Chr7:89396696-89396715 | MsG0780041303.01.T01:CDS | 35.0% | |
| GTGTATGGTGTAGATTATGA+AGG | - | Chr7:89394793-89394812 | MsG0780041303.01.T01:CDS | 35.0% | |
| TACACCATACACAGCATATT+TGG | + | Chr7:89394785-89394804 | None:intergenic | 35.0% | |
| TATACCACTTCCTTTGACAA+TGG | - | Chr7:89395540-89395559 | MsG0780041303.01.T01:intron | 35.0% | |
| TCATGGTTACAAGTCTCAAT+TGG | + | Chr7:89396612-89396631 | None:intergenic | 35.0% | |
| TCTTGAAGACACCTTATACA+AGG | - | Chr7:89395646-89395665 | MsG0780041303.01.T01:intron | 35.0% | |
| TTAAATTGTACCCTGGAATG+TGG | - | Chr7:89396478-89396497 | MsG0780041303.01.T01:CDS | 35.0% | |
| TTATCTGCAACCATTGTCAA+AGG | + | Chr7:89395553-89395572 | None:intergenic | 35.0% | |
| TTTGACAATGGTTGCAGATA+AGG | - | Chr7:89395552-89395571 | MsG0780041303.01.T01:intron | 35.0% | |
| ! | AAGAGTATAAGGGAAAAGCT+AGG | - | Chr7:89394998-89395017 | MsG0780041303.01.T01:CDS | 35.0% |
| ! | ATCAAAAGGACCCTTCTTTT+TGG | - | Chr7:89395067-89395086 | MsG0780041303.01.T01:CDS | 35.0% |
| ! | CAATTTTGCCTTCAAAGATC+CGG | - | Chr7:89395393-89395412 | MsG0780041303.01.T01:intron | 35.0% |
| ! | GCTGGTTCTTAACATTTCTA+GGG | + | Chr7:89395621-89395640 | None:intergenic | 35.0% |
| ! | TAAGCATTGTTGAGACTGTT+TGG | - | Chr7:89395779-89395798 | MsG0780041303.01.T01:intron | 35.0% |
| ! | TAGCTTTTCCCTTATACTCT+TGG | + | Chr7:89394999-89395018 | None:intergenic | 35.0% |
| ! | TCAAAAGGACCCTTCTTTTT+GGG | - | Chr7:89395068-89395087 | MsG0780041303.01.T01:CDS | 35.0% |
| ! | TCAGTTCTCCAAGAGTATAA+GGG | - | Chr7:89394988-89395007 | MsG0780041303.01.T01:CDS | 35.0% |
| ! | TTCAGTTCTCCAAGAGTATA+AGG | - | Chr7:89394987-89395006 | MsG0780041303.01.T01:CDS | 35.0% |
| ! | TTTCAAGTCAGTTAGTGGTA+TGG | - | Chr7:89394888-89394907 | MsG0780041303.01.T01:CDS | 35.0% |
| !! | ATCCTATTCAAAAAGGCATC+CGG | + | Chr7:89396027-89396046 | None:intergenic | 35.0% |
| !! | TCCGGGATAACTTTTGAAAA+CGG | - | Chr7:89395858-89395877 | MsG0780041303.01.T01:intron | 35.0% |
| !! | TGCTGGTTCTTAACATTTCT+AGG | + | Chr7:89395622-89395641 | None:intergenic | 35.0% |
| !!! | GACTTTTTCAAGTCAGTTAG+TGG | - | Chr7:89394883-89394902 | MsG0780041303.01.T01:CDS | 35.0% |
| ACAACGTGTACCTTACACAT+GGG | + | Chr7:89395114-89395133 | None:intergenic | 40.0% | |
| AGAATCATAGGCAGCATTGT+TGG | + | Chr7:89396583-89396602 | None:intergenic | 40.0% | |
| ATAATGCCCTGCTTACTTCT+GGG | + | Chr7:89396428-89396447 | None:intergenic | 40.0% | |
| ATGTGGCATGGTTTAACATC+TGG | - | Chr7:89396495-89396514 | MsG0780041303.01.T01:intron | 40.0% | |
| GGAAAAGCTAGGTTCTTGTA+TGG | - | Chr7:89395009-89395028 | MsG0780041303.01.T01:CDS | 40.0% | |
| GGTGTAGATTATGAAGGACA+TGG | - | Chr7:89394799-89394818 | MsG0780041303.01.T01:CDS | 40.0% | |
| GTCTTTGCTGATGATACAAC+TGG | + | Chr7:89396651-89396670 | None:intergenic | 40.0% | |
| GTGTCAATGTCTCATTGTCA+TGG | + | Chr7:89396629-89396648 | None:intergenic | 40.0% | |
| TACAACGTGTACCTTACACA+TGG | + | Chr7:89395115-89395134 | None:intergenic | 40.0% | |
| TATAATGCCCTGCTTACTTC+TGG | + | Chr7:89396429-89396448 | None:intergenic | 40.0% | |
| TGTGCCAAATATGCTGTGTA+TGG | - | Chr7:89394778-89394797 | MsG0780041303.01.T01:CDS | 40.0% | |
| TTAAACCATGCCACATTCCA+GGG | + | Chr7:89396491-89396510 | None:intergenic | 40.0% | |
| TTCTTGTATGGAGAGTCCAT+GGG | - | Chr7:89395021-89395040 | MsG0780041303.01.T01:CDS | 40.0% | |
| TTTGTTGGCAAGCCGAAAAA+AGG | + | Chr7:89396272-89396291 | None:intergenic | 40.0% | |
| ! | AACCGGATGCCTTTTTGAAT+AGG | - | Chr7:89396022-89396041 | MsG0780041303.01.T01:intron | 40.0% |
| !! | ATGTTGATGACAACTTGGTG+TGG | + | Chr7:89395313-89395332 | None:intergenic | 40.0% |
| !! | GCCGTTTTCAAAAGTTATCC+CGG | + | Chr7:89395862-89395881 | None:intergenic | 40.0% |
| !!! | TCTAGGGCTGTTTTTAACCT+GGG | + | Chr7:89395605-89395624 | None:intergenic | 40.0% |
| !!! | TTCTAGGGCTGTTTTTAACC+TGG | + | Chr7:89395606-89395625 | None:intergenic | 40.0% |
| AAACCTCACCCTTTCTCGTT+TGG | + | Chr7:89395419-89395438 | None:intergenic | 45.0% | |
| GAAGGACATGGACAATCTGA+AGG | - | Chr7:89394811-89394830 | MsG0780041303.01.T01:CDS | 45.0% | |
| GCAACCATTGTCAAAGGAAG+TGG | + | Chr7:89395547-89395566 | None:intergenic | 45.0% | |
| GGTGTCTTCAAGATTCATGC+TGG | + | Chr7:89395639-89395658 | None:intergenic | 45.0% | |
| GTACTACAGAATGTGGAGTG+CGG | - | Chr7:89394749-89394768 | MsG0780041303.01.T01:CDS | 45.0% | |
| GTGGAAGATAGTTCCCACAA+AGG | - | Chr7:89395363-89395382 | MsG0780041303.01.T01:intron | 45.0% | |
| GTGGGAACTATCTTCCACTT+TGG | + | Chr7:89395361-89395380 | None:intergenic | 45.0% | |
| GTTAAACCATGCCACATTCC+AGG | + | Chr7:89396492-89396511 | None:intergenic | 45.0% | |
| GTTCTTGTATGGAGAGTCCA+TGG | - | Chr7:89395020-89395039 | MsG0780041303.01.T01:CDS | 45.0% | |
| ! | CTTTGGGTGGAATTTTGAGC+AGG | - | Chr7:89396353-89396372 | MsG0780041303.01.T01:intron | 45.0% |
| ! | TTTTTAACCTGGGCTTGTCC+TGG | + | Chr7:89395595-89395614 | None:intergenic | 45.0% |
| !! | AAGGACCCTTCTTTTTGGGA+TGG | - | Chr7:89395072-89395091 | MsG0780041303.01.T01:CDS | 45.0% |
| AAGATCCGGCCAAACGAGAA+AGG | - | Chr7:89395407-89395426 | MsG0780041303.01.T01:intron | 50.0% | |
| ACAGCGCCATCCCAAAAAGA+AGG | + | Chr7:89395081-89395100 | None:intergenic | 50.0% | |
| AGATCCGGCCAAACGAGAAA+GGG | - | Chr7:89395408-89395427 | MsG0780041303.01.T01:intron | 50.0% | |
| CAGCGCCATCCCAAAAAGAA+GGG | + | Chr7:89395080-89395099 | None:intergenic | 50.0% | |
| GACAGACCCAGAAGTAAGCA+GGG | - | Chr7:89396419-89396438 | MsG0780041303.01.T01:CDS | 50.0% | |
| TAGACTAACTGCTCCACCCA+TGG | + | Chr7:89395040-89395059 | None:intergenic | 50.0% | |
| TCGTTTGGCCGGATCTTTGA+AGG | + | Chr7:89395404-89395423 | None:intergenic | 50.0% | |
| TGACAGACCCAGAAGTAAGC+AGG | - | Chr7:89396418-89396437 | MsG0780041303.01.T01:CDS | 50.0% | |
| TGATATACCAGGACAAGCCC+AGG | - | Chr7:89395585-89395604 | MsG0780041303.01.T01:intron | 50.0% | |
| TTGTACCCTGGAATGTGGCA+TGG | - | Chr7:89396483-89396502 | MsG0780041303.01.T01:CDS | 50.0% | |
| TTGTATGGAGAGTCCATGGG+TGG | - | Chr7:89395024-89395043 | MsG0780041303.01.T01:CDS | 50.0% | |
| CTCACCCTTTCTCGTTTGGC+CGG | + | Chr7:89395415-89395434 | None:intergenic | 55.0% | |
| CCTTACACATGGGCGCGACA+AGG | + | Chr7:89395104-89395123 | None:intergenic | 60.0% | |
| CCTTGTCGCGCCCATGTGTA+AGG | - | Chr7:89395101-89395120 | MsG0780041303.01.T01:intron | 60.0% | |
| CGGCCAAACGAGAAAGGGTG+AGG | - | Chr7:89395413-89395432 | MsG0780041303.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 89394745 | 89396749 | 89394745 | ID=MsG0780041303.01;Name=MsG0780041303.01 |
| Chr7 | mRNA | 89394745 | 89396749 | 89394745 | ID=MsG0780041303.01.T01;Parent=MsG0780041303.01;Name=MsG0780041303.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0|0|1|1|1|4|0|267 |
| Chr7 | exon | 89396590 | 89396749 | 89396590 | ID=MsG0780041303.01.T01:exon:15637;Parent=MsG0780041303.01.T01 |
| Chr7 | exon | 89396372 | 89396502 | 89396372 | ID=MsG0780041303.01.T01:exon:15636;Parent=MsG0780041303.01.T01 |
| Chr7 | exon | 89396065 | 89396202 | 89396065 | ID=MsG0780041303.01.T01:exon:15635;Parent=MsG0780041303.01.T01 |
| Chr7 | exon | 89394745 | 89395119 | 89394745 | ID=MsG0780041303.01.T01:exon:15634;Parent=MsG0780041303.01.T01 |
| Chr7 | CDS | 89396590 | 89396749 | 89396590 | ID=MsG0780041303.01.T01:cds;Parent=MsG0780041303.01.T01 |
| Chr7 | CDS | 89396372 | 89396502 | 89396372 | ID=MsG0780041303.01.T01:cds;Parent=MsG0780041303.01.T01 |
| Chr7 | CDS | 89396065 | 89396202 | 89396065 | ID=MsG0780041303.01.T01:cds;Parent=MsG0780041303.01.T01 |
| Chr7 | CDS | 89394745 | 89395119 | 89394745 | ID=MsG0780041303.01.T01:cds;Parent=MsG0780041303.01.T01 |
| Gene Sequence |
| Protein sequence |
