AlfalfaGEDB | MsG0780041804.01

M. sativa cultivar ZhongmuNo.1 / MsG0780041804.01

KEGG: K20291
GO: -
PFAM: PF08318

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041804.01.T01	ABD32707.1	99.064	748	6	1	1	748	1	747	0	1516

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041804.01.T01	Q8L838	78.019	737	156	2	12	748	8	738	0	1195

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041804.01.T01	Q2HTC4	99.064	748	6	1	1	748	1	747	0.0	1516

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000275.01	MsG0780041804.01	0.814161	1.773891e-51	1.181335e-48
MsG0180004989.01	MsG0780041804.01	0.800236	1.584151e-48	7.338509e-46
MsG0280007419.01	MsG0780041804.01	0.822061	2.896773e-53	2.398478e-50
MsG0280009255.01	MsG0780041804.01	0.827966	1.168373e-54	1.145500e-51
MsG0380017240.01	MsG0780041804.01	0.810520	1.106742e-50	6.685665e-48
MsG0380017983.01	MsG0780041804.01	0.810464	1.137665e-50	6.862426e-48
MsG0480018256.01	MsG0780041804.01	0.817360	3.433937e-52	2.495387e-49
MsG0480021156.01	MsG0780041804.01	0.822743	2.012139e-53	1.698926e-50
MsG0480022952.01	MsG0780041804.01	0.802835	4.646974e-49	2.299567e-46
MsG0480023053.01	MsG0780041804.01	0.846708	1.833212e-59	3.183380e-56

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041804.01.T01	MTR_7g118220	99.064	748	6	1	1	748	1	747	0.0	1516

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041804.01.T01	AT4G01395	78.019	737	156	2	12	748	8	738	0.0	1195

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Find 184 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTTAGTCAGCTTGG+TGG	0.574262	7:-95356119	MsG0780041804.01.T01:CDS
AAAAGTATCGTAATTGTTAG+CGG	0.530343	7:+95356196	None:intergenic
AAAATGTTAGGAAGGCGATA+AGG	0.508997	7:-95357379	MsG0780041804.01.T01:CDS
AAAATTAGAGAGCCAAACCT+TGG	0.582691	7:-95357182	MsG0780041804.01.T01:CDS
AAAGTTGCGCAGGATTTGAC+CGG	0.471346	7:-95357437	MsG0780041804.01.T01:CDS
AAATCTTGTTTGTCTGAGTT+AGG	0.382284	7:-95356437	MsG0780041804.01.T01:CDS
AACAACAATTTACTTGCTGT+TGG	0.454177	7:-95357641	MsG0780041804.01.T01:CDS
AACAACTTTGCACCAAGGTT+TGG	0.388605	7:+95357170	None:intergenic
AACAAGTGGTCCATCGATTT+CGG	0.356403	7:-95358589	MsG0780041804.01.T01:CDS
AACAATTAGCTATGAGCTTT+CGG	0.338036	7:-95356315	MsG0780041804.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAATTAGCTATGAGCTTT+CGG	-	Chr7:95358062-95358081	MsG0780041804.01.T01:CDS	30.0%
AATGAATGTGAGCATTAAAC+AGG	+	Chr7:95357534-95357553	None:intergenic	30.0%
ATTTGTAGATGGTTGACTAT+AGG	-	Chr7:95357442-95357461	MsG0780041804.01.T01:CDS	30.0%
GATACTGAAGATTATGAATC+TGG	-	Chr7:95356175-95356194	MsG0780041804.01.T01:CDS	30.0%
GGGTATTTGAAAAAAGTCAT+TGG	-	Chr7:95356430-95356449	MsG0780041804.01.T01:CDS	30.0%
GGTAAATCTGATTACACTAA+TGG	+	Chr7:95358689-95358708	None:intergenic	30.0%
TAGAATGGAATTTGAGCAAT+TGG	-	Chr7:95356462-95356481	MsG0780041804.01.T01:CDS	30.0%
TTTGTTTAAGGACATTGTGT+TGG	-	Chr7:95356546-95356565	MsG0780041804.01.T01:intron	30.0%
AAAAGATTTAGTCAGCTTGG+TGG	-	Chr7:95358258-95358277	MsG0780041804.01.T01:CDS	35.0%
AAAATGTTAGGAAGGCGATA+AGG	-	Chr7:95356998-95357017	MsG0780041804.01.T01:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	95355626	95358773	95355626	ID=MsG0780041804.01;Name=MsG0780041804.01
Chr7	mRNA	95355626	95358773	95355626	ID=MsG0780041804.01.T01;Parent=MsG0780041804.01;Name=MsG0780041804.01.T01;_AED=0.46;_eAED=0.46;_QI=108\|1\|1\|1\|1\|1\|2\|237\|748
Chr7	exon	95355626	95356492	95355626	ID=MsG0780041804.01.T01:exon:21016;Parent=MsG0780041804.01.T01
Chr7	exon	95357049	95358773	95357049	ID=MsG0780041804.01.T01:exon:21015;Parent=MsG0780041804.01.T01
Chr7	five_prime_UTR	95358666	95358773	95358666	ID=MsG0780041804.01.T01:five_prime_utr;Parent=MsG0780041804.01.T01
Chr7	CDS	95357049	95358665	95357049	ID=MsG0780041804.01.T01:cds;Parent=MsG0780041804.01.T01
Chr7	CDS	95355863	95356492	95355863	ID=MsG0780041804.01.T01:cds;Parent=MsG0780041804.01.T01
Chr7	three_prime_UTR	95355626	95355862	95355626	ID=MsG0780041804.01.T01:three_prime_utr;Parent=MsG0780041804.01.T01

Gene Sequence

>MsG0780041804.01.T01

ATGGGATCCATCTCAACTCCTCACACTCACCCCAACGGATCCGCTGATGAAGAGAACAAGTGGTCCATCGATTTCGGCAAAGCGGAAGCAGTTGAATACGTTCGCACTCTCACCGACGTCGGAGCTATGACTCGTCTTCTTCACGAATGCATTGCTCATCAAAGATCACTCGATATGCAACTCGACGATCTCTTATCTCAACGCACTGACCTCGATCGTCATCTCATTCAACTTCAACGTTCCTCCGATGTTCTCGAAATCGTTCAATCTGATTCCGATTACATGCTCTCCAATGTCACTTCCACTTCTCATCTTGCCGATCAAGTCAGTCTTAAGGTTCGTGAGCTTGATCTCGCACAGTCGCGCGTTCGATCCACGCTCCACCGTATTGATGCCATTGTTGAGCGTGGTAATTGCCTTGACGGTGTGCTCCGTGCGCTTGATACTGAAGATTATGAATCTGGTGCTAGGTATGTTCAAACTTTCCTTCAGATTGATGCGCAGTTTAAGGATTCTGGTTCTGATCAGATTCAGATTCAGAGGGAACGTTTGTTGGAAGTGAAGAAACAGCTTGAAGGGATTGTCAGGAAGAAGCTTTCTTCCGCGGTGGATCAGCGTGATCATCCTGCTATTCTTAGGTTTGTTCGTCTTTACACTCCGCTTGGTCTTGAAGAGGAGGGTTTGCAGGTCTATGTTGGGTATTTGAAAAAAGTCATTGGAATGAGATCTAGAATGGAATTTGAGCAATTGGTGGAATCAATGTCCATGGCCAATGAACAAAGGAGTGTCAATTTTGTTGCCTGTTTAACTTCTTTGTTTAAGGACATTGTGTTGGCTATTGAAGAGAACAGTGAGATTTTGAGTGGTTTATGTGGGGAGGATGGTATTGTGTATGCAATCTGTGAGCTTCAGGAGGAATGTGATTCAAGGGGTTCTGTTATTTTGAACAAATACATGGAGTACAGGAAGTTGGCTCAGTTATCATCTGAGATAAATGGCCGTAACAACAATTTACTTGCTGTTGGAGGAGTTTCCGAAGGACCTGATCCGAGAGAGGTTGAGTTGTACTTGGAAGAGATTCTCTCCCTTATGCAGCTAGGTGAGGATTATACTGAATTCATGATTTCCAAGATCAAAGCTCTCACTTCTGTTGATCCCGAATTGCTCCCTCGTGCTACCAAATCTTTCAGAAGTGGTAGCTTCAGCAAAGTTGCGCAGGATTTGACCGGGTTTTATGTCATTCTTGAGGGATTTTTCATGGTTGAAAATGTTAGGAAGGCGATAAGGATTGATGAACACGACCCTGATAGCCTCACCACTTCTATGGTGGATGATGTGTTCTATGTCTTGCAAAGTTGCTTGCGAAGGGCTATATCCACTTCCAATATCAGTTCTGTTGTCGCGGTATTGAGCGGTGCTAGTAGTTTGCTGAGCAATGAATATCATGAAGCATTACAACAGAAAATTAGAGAGCCAAACCTTGGTGCAAAGTTGTTCTTTGGAGGCGTTGGTGTGCAAAAGACAGGGACAGATATTGCAGCGGCTTTAAATAACATGGATGTTAGCAGTGAATATGTTCTCAAGTTGAAACATGAAATTGAAGAACAGTGTGCTGAGGTGTTTCCTGCGCCAGCTGATCGAGAAAAGGTAAAATCTTGTTTGTCTGAGTTAGGAGATAGCAGCATTGCTTTCAAGCAAGCTTTAAATTCTGGCATTGAACAACTTGTAGCAACCATTACACCACGGATACGGCCACTATTAGACAGTGTAGGAACAATTAGCTATGAGCTTTCGGAGGCTGAGTATGCAGATAATGAGGTGAATGACCCATGGGTTCAGAGACTTCTCCATGCTGTGGAAACAAATGTGGCTTGGCTGCAGCCACTGATGACCGCTAACAATTACGATACTTTTGTTCATTTGGTTATTGACTTCATTGTGAAAAGGCTTGAAGTCATTATGATGCAGAAAAGATTTAGTCAGCTTGGTGGTCTTCAGCTTGACAGAGATGCTCGAGCTCTAGTTAGTCATTTCAGCATCATGACACAGAGGACTGTTAGAGACAAGTTTGCCCGTCTTACTCAAATGGCAACAATTCTAAATTTGGAAAAGGTCTCCGAGATTCTAGATTTCTGGGGTGAGAACTCTGGGCCTATGACCTGGAGATTAACTCCAGCTGAGGTTAGGCGTGTATTGGGTCTGCGAGTTGATTTTAAACCAGAAGCAATAGCTGCTCTGAAGTTGTAA

Protein sequence

>MsG0780041804.01.T01

MGSISTPHTHPNGSADEENKWSIDFGKAEAVEYVRTLTDVGAMTRLLHECIAHQRSLDMQLDDLLSQRTDLDRHLIQLQRSSDVLEIVQSDSDYMLSNVTSTSHLADQVSLKVRELDLAQSRVRSTLHRIDAIVERGNCLDGVLRALDTEDYESGARYVQTFLQIDAQFKDSGSDQIQIQRERLLEVKKQLEGIVRKKLSSAVDQRDHPAILRFVRLYTPLGLEEEGLQVYVGYLKKVIGMRSRMEFEQLVESMSMANEQRSVNFVACLTSLFKDIVLAIEENSEILSGLCGEDGIVYAICELQEECDSRGSVILNKYMEYRKLAQLSSEINGRNNNLLAVGGVSEGPDPREVELYLEEILSLMQLGEDYTEFMISKIKALTSVDPELLPRATKSFRSGSFSKVAQDLTGFYVILEGFFMVENVRKAIRIDEHDPDSLTTSMVDDVFYVLQSCLRRAISTSNISSVVAVLSGASSLLSNEYHEALQQKIREPNLGAKLFFGGVGVQKTGTDIAAALNNMDVSSEYVLKLKHEIEEQCAEVFPAPADREKVKSCLSELGDSSIAFKQALNSGIEQLVATITPRIRPLLDSVGTISYELSEAEYADNEVNDPWVQRLLHAVETNVAWLQPLMTANNYDTFVHLVIDFIVKRLEVIMMQKRFSQLGGLQLDRDARALVSHFSIMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAIAALKL*