AlfalfaGEDB | MsG0880043094.01

M. sativa cultivar ZhongmuNo.1 / MsG0880043094.01

KEGG: -
GO: GO:0016491 GO:0055114
PFAM: PF03171

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043094.01.T01	GAU49732.1	77.778	261	29	1	1	232	1	261	3.07E-140	405

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043094.01.T01	Q9LTH7	46.429	280	85	3	17	231	14	293	1.66E-84	258

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043094.01.T01	A0A2Z6PHK3	77.778	261	29	1	1	232	1	261	1.47e-140	405

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180004110.01	MsG0880043094.01	0.853105	2.976389e-61	6.358912e-58
MsG0180004111.01	MsG0880043094.01	0.825993	3.462505e-54	3.206411e-51
MsG0180004752.01	MsG0880043094.01	0.802884	4.539083e-49	2.248876e-46
MsG0180004770.01	MsG0880043094.01	0.836860	7.304188e-57	9.322614e-54
MsG0180004867.01	MsG0880043094.01	0.838591	2.625429e-57	3.533166e-54
MsG0180005996.01	MsG0880043094.01	0.805346	1.395480e-49	7.365405e-47
MsG0180006047.01	MsG0880043094.01	0.836433	9.383245e-57	1.182374e-53
MsG0280006974.01	MsG0880043094.01	0.816279	6.002285e-52	4.234867e-49
MsG0280007253.01	MsG0880043094.01	0.836706	7.995496e-57	1.015732e-53
MsG0280007272.01	MsG0880043094.01	0.828103	1.082476e-54	1.065541e-51

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043094.01.T01	MTR_8g028435	75.089	281	10	2	1	221	1	281	3.88e-142	402
MsG0880043094.01.T01	MTR_8g009170	68.814	295	31	3	1	234	1	295	1.06e-135	383
MsG0880043094.01.T01	MTR_8g009090	70.819	281	22	2	1	221	1	281	2.81e-135	385
MsG0880043094.01.T01	MTR_8g009160	69.751	281	25	2	1	221	1	281	6.44e-133	379
MsG0880043094.01.T01	MTR_8g009110	70.213	282	23	3	1	221	1	282	2.02e-131	375
MsG0880043094.01.T01	MTR_8g008930	66.667	282	33	2	1	221	1	282	3.40e-129	369
MsG0880043094.01.T01	MTR_8g009170	68.794	282	27	3	1	221	1	282	4.53e-128	367
MsG0880043094.01.T01	MTR_4g117880	61.348	282	48	2	1	221	1	282	2.87e-118	342
MsG0880043094.01.T01	MTR_8g009120	60.490	286	40	4	1	225	1	274	2.33e-107	313
MsG0880043094.01.T01	MTR_8g009150	60.638	282	30	4	1	221	1	262	1.63e-106	311

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043094.01.T01	AT5G59540	47.778	270	76	3	17	221	14	283	6.19e-86	257
MsG0880043094.01.T01	AT5G59540	46.429	280	85	3	17	231	14	293	1.69e-85	258
MsG0880043094.01.T01	AT1G04350	47.566	267	79	3	16	221	10	276	3.76e-85	257
MsG0880043094.01.T01	AT1G06640	47.279	294	84	6	9	234	8	298	2.69e-84	254
MsG0880043094.01.T01	AT1G06620	49.438	267	73	3	19	223	18	284	3.14e-84	252
MsG0880043094.01.T01	AT2G30840	48.718	273	75	3	16	223	9	281	1.64e-83	251
MsG0880043094.01.T01	AT1G06650	48.897	272	73	4	16	221	14	285	6.26e-83	250
MsG0880043094.01.T01	AT5G59530	47.601	271	74	4	17	221	13	281	1.45e-82	251
MsG0880043094.01.T01	AT1G06620	47.636	275	82	3	19	231	18	292	1.52e-82	251
MsG0880043094.01.T01	AT1G06650	48.897	272	73	4	16	221	14	285	3.82e-82	250

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Find 59 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATATGGATTGTGCTGA+AGG	0.509848	8:+18991150	MsG0880043094.01.T01:CDS
AACTCCTCAAGAACACTCAA+AGG	0.516232	8:-18990198	None:intergenic
AAGATATTCCTGTGGTATGC+AGG	0.486135	8:+18990396	MsG0880043094.01.T01:CDS
AAGTTCTTTATCAGGATAAA+TGG	0.233714	8:+18991295	MsG0880043094.01.T01:CDS
AATAACATGGCTTGTGTTGT+AGG	0.361872	8:-18990057	None:intergenic
AATCCCTTTGAGTGTTCTTG+AGG	0.545874	8:+18990194	MsG0880043094.01.T01:CDS
AATTCTGGTTCAGGACAAGG+AGG	0.722763	8:-18991198	None:intergenic
ACAGGAATATCTTCTGGTTT+GGG	0.384567	8:-18990386	None:intergenic
ACATTAACTATGAGAGCTCC+AGG	0.533138	8:-18991336	None:intergenic
ACTATGAGAGCTCCAGGAAC+AGG	0.475780	8:-18991330	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGATATACTGCTAGAATA+TGG	+	Chr8:18991051-18991070	MsG0880043094.01.T01:intron	30.0%
GAAATCATTATCAGAATGCT+TGG	-	Chr8:18991238-18991257	None:intergenic	30.0%
GATTAAATAGAACTCTCATG+TGG	-	Chr8:18990951-18990970	None:intergenic	30.0%
GGAAAATACATGAGAAATCT+AGG	+	Chr8:18991072-18991091	MsG0880043094.01.T01:CDS	30.0%
GGTATAATTGAATGTAACCA+TGG	-	Chr8:18990551-18990570	None:intergenic	30.0%
TAGGCTAACTCATATTTATC+AGG	-	Chr8:18990041-18990060	None:intergenic	30.0%
TCCAAACCATCTAAAAGATA+TGG	+	Chr8:18991137-18991156	MsG0880043094.01.T01:CDS	30.0%
ATATCTACAAGGTCTATGAC+AGG	-	Chr8:18990083-18990102	None:intergenic	35.0%
GAAACAAAAGCTGGTGTAAA+AGG	+	Chr8:18989966-18989985	MsG0880043094.01.T01:CDS	35.0%
GAACTATTGTCAGAAGCTTT+AGG	+	Chr8:18991108-18991127	MsG0880043094.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	18989900	18991419	18989900	ID=MsG0880043094.01;Name=MsG0880043094.01
Chr8	mRNA	18989900	18991419	18989900	ID=MsG0880043094.01.T01;Parent=MsG0880043094.01;Name=MsG0880043094.01.T01;_AED=0.46;_eAED=0.46;_QI=0\|0\|0\|1\|1\|1\|4\|0\|235
Chr8	exon	18989900	18990094	18989900	ID=MsG0880043094.01.T01:exon:3771;Parent=MsG0880043094.01.T01
Chr8	exon	18990180	18990238	18990180	ID=MsG0880043094.01.T01:exon:3772;Parent=MsG0880043094.01.T01
Chr8	exon	18990331	18990417	18990331	ID=MsG0880043094.01.T01:exon:3773;Parent=MsG0880043094.01.T01
Chr8	exon	18991053	18991419	18991053	ID=MsG0880043094.01.T01:exon:3774;Parent=MsG0880043094.01.T01
Chr8	CDS	18989900	18990094	18989900	ID=MsG0880043094.01.T01:cds;Parent=MsG0880043094.01.T01
Chr8	CDS	18990180	18990238	18990180	ID=MsG0880043094.01.T01:cds;Parent=MsG0880043094.01.T01
Chr8	CDS	18990331	18990417	18990331	ID=MsG0880043094.01.T01:cds;Parent=MsG0880043094.01.T01
Chr8	CDS	18991053	18991419	18991053	ID=MsG0880043094.01.T01:cds;Parent=MsG0880043094.01.T01

Gene Sequence

>MsG0880043094.01.T01

ATGGGAACCACTTATCCAGCCAAGCCTAACCTTGATTCTATATTGAATGAACGCAAAGCATTTGATGAAACAAAAGCTGGTGTAAAAGGACTTGTTGATGGAGGACTTAAGAAGATCCCTACCTTATTCCATCATCAACCTGATAAATATGAGTTAGCCTACAACACAAGCCATGTTATTCCTGTCATAGACCTTGTTGTTAACCATGGAATCCCTTTGAGTGTTCTTGAGGAGTTGAAAGATGGTGTTAAGAGCTCACCAGCGCTTAATTGGAGAGATACTTTTACATGTTACTTGGCTCCTGATACTCCCAAACCAGAAGATATTCCTGTGGTATGCAGAGATATACTGCTAGAATATGGAAAATACATGAGAAATCTAGGGACTTTATTGTTTGAACTATTGTCAGAAGCTTTAGGTCTGAATCCAAACCATCTAAAAGATATGGATTGTGCTGAAGGACTACTTGCTCTTTGCCATTATTATCCTCCTTGTCCTGAACCAGAATTGACTGTGGGAACAACCAAGCATTCTGATAATGATTTCCTCACTGTGCTTCTCCAAGACCATATTGGTGGCCTCCAAGTTCTTTATCAGGATAAATGGATTGACATTACACCTGTTCCTGGAGCTCTCATAGTTAATGTTGGAGATCTTTTGCAGGCAAGTTTAATGCATTCTTATGTACATATTTCCAAAAACTCTTAG

Protein sequence

>MsG0880043094.01.T01

MGTTYPAKPNLDSILNERKAFDETKAGVKGLVDGGLKKIPTLFHHQPDKYELAYNTSHVIPVIDLVVNHGIPLSVLEELKDGVKSSPALNWRDTFTCYLAPDTPKPEDIPVVCRDILLEYGKYMRNLGTLLFELLSEALGLNPNHLKDMDCAEGLLALCHYYPPCPEPELTVGTTKHSDNDFLTVLLQDHIGGLQVLYQDKWIDITPVPGALIVNVGDLLQASLMHSYVHISKNS*