AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004110.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004110.01.T01 MTR_1g075340 84.906 53 8 0 1 53 1 53 6.95e-26 93.6
MsG0180004110.01.T01 MTR_1g075340 84.906 53 8 0 1 53 1 53 6.95e-26 93.6
MsG0180004110.01.T01 MTR_5g090250 84.906 53 8 0 1 53 1 53 1.01e-25 93.2
MsG0180004110.01.T01 MTR_5g090250 84.906 53 8 0 1 53 1 53 1.01e-25 93.2
MsG0180004110.01.T01 MTR_1g075380 90.196 51 5 0 3 53 4 54 1.18e-25 92.8
MsG0180004110.01.T01 MTR_1g075410 84.314 51 8 0 3 53 5 55 6.95e-24 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004110.01.T01 AT2G38870 58.491 53 22 0 1 53 1 53 1.64e-16 69.7

Find 62 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGAGGAGTCGGAGGTTT+TGG 0.241551 1:+73518673 MsG0180004110.01.T01:CDS
TGTTGTGATGGAGGTGGATA+TGG 0.242000 1:+73518712 MsG0180004110.01.T01:CDS
TTTGCAATTCTTCTTGTGTT+TGG 0.271522 1:-73513445 None:intergenic
CTTGGAAGTGGTGGTGGATA+TGG 0.324457 1:+73518607 MsG0180004110.01.T01:CDS
GGTGGAGGAGACATGGGTTA+TGG 0.380378 1:+73518628 MsG0180004110.01.T01:CDS
GGCAGAGGCGGCGACCGTCT+TGG 0.417720 1:+73518589 MsG0180004110.01.T01:CDS
CGTGGAGTTAGTGGTGGATA+TGG 0.424472 1:+73518565 MsG0180004110.01.T01:CDS
TACATATTGAAGGATCAAAA+AGG 0.425186 1:+73513497 MsG0180004110.01.T01:five_prime_UTR
GGGAAGAGGTTGAGGCTTTG+AGG 0.435678 1:+73518519 MsG0180004110.01.T01:CDS
TGGATATGGTGGAGGAGACA+TGG 0.447770 1:+73518621 MsG0180004110.01.T01:CDS
GGAAGTGGTGGTGGATATGG+TGG 0.448491 1:+73518610 MsG0180004110.01.T01:CDS
CCTTCCACTCCAACCAACTC+TGG 0.454716 1:-73513666 None:intergenic
AATGCCATCATTGTGCTAGA+AGG 0.471882 1:+73513732 MsG0180004110.01.T01:CDS
GGCGGCAGTGGCTGTTGTGA+TGG 0.472834 1:+73518700 MsG0180004110.01.T01:CDS
GACCGTCTTGGAAGTGGTGG+TGG 0.475388 1:+73518601 MsG0180004110.01.T01:CDS
GGAGACATGGGTTATGGAGG+TGG 0.479710 1:+73518634 MsG0180004110.01.T01:CDS
AGAACAATGGGAAGAGGTTG+AGG 0.483505 1:+73518511 MsG0180004110.01.T01:CDS
GGTGGATGTCGTGGAGTTAG+TGG 0.489664 1:+73518556 MsG0180004110.01.T01:CDS
AAAATAGTCATACATATTGA+AGG 0.494025 1:+73513487 MsG0180004110.01.T01:five_prime_UTR
TGAAGAAATGAGAGAACAAT+GGG 0.498138 1:+73518499 MsG0180004110.01.T01:CDS
GAGGCTCAGAGTCGCGGCGG+TGG 0.502698 1:+73518538 MsG0180004110.01.T01:CDS
GGCGGCGACCGTCTTGGAAG+TGG 0.507549 1:+73518595 MsG0180004110.01.T01:CDS
CCAGAGTTGGTTGGAGTGGA+AGG 0.515293 1:+73513666 MsG0180004110.01.T01:CDS
TGTTCTCAGCTAAGAGCTCA+TGG 0.516002 1:+73513643 MsG0180004110.01.T01:intron
CCGACGACTTACGCAACGAC+AGG 0.517888 1:+73513766 MsG0180004110.01.T01:CDS
GGAGGAGACATGGGTTATGG+AGG 0.526701 1:+73518631 MsG0180004110.01.T01:CDS
GTTGGTTGGAGTGGAAGGAA+AGG 0.527079 1:+73513671 MsG0180004110.01.T01:CDS
AATGAGAGAACAATGGGAAG+AGG 0.527919 1:+73518505 MsG0180004110.01.T01:CDS
GGATATGGTGGAGGAGACAT+GGG 0.534096 1:+73518622 MsG0180004110.01.T01:CDS
AGATCCTTCTAGCACAATGA+TGG 0.537596 1:-73513736 None:intergenic
GGTGGTAACCGTCGTGGAGA+CGG 0.543127 1:+73518652 MsG0180004110.01.T01:CDS
CGTGGAGACGGTGGAGGAGT+CGG 0.543667 1:+73518664 MsG0180004110.01.T01:CDS
GGCAGTGGCTGTTGTGATGG+AGG 0.545402 1:+73518703 MsG0180004110.01.T01:CDS
GTGAAGAAATGAGAGAACAA+TGG 0.546267 1:+73518498 MsG0180004110.01.T01:CDS
AGTCGCGGCGGTGGATGTCG+TGG 0.553337 1:+73518547 MsG0180004110.01.T01:CDS
GGTGGATATGGTGGCAGAGG+CGG 0.554236 1:+73518577 MsG0180004110.01.T01:CDS
GGCTTTGAGGCTCAGAGTCG+CGG 0.556883 1:+73518532 MsG0180004110.01.T01:CDS
ATGGCCAGAGTTGGTTGGAG+TGG 0.564909 1:+73513662 MsG0180004110.01.T01:CDS
AGTGGTGGTGGATATGGTGG+AGG 0.567066 1:+73518613 MsG0180004110.01.T01:CDS
AGTGGTGGATATGGTGGCAG+AGG 0.570826 1:+73518574 MsG0180004110.01.T01:CDS
AACCGTCGTGGAGACGGTGG+AGG 0.572202 1:+73518658 MsG0180004110.01.T01:CDS
AATTCAGAGGGAGAATCCAT+TGG 0.572843 1:+73513707 MsG0180004110.01.T01:CDS
TAAGAGCTCATGGCCAGAGT+TGG 0.573671 1:+73513653 MsG0180004110.01.T01:CDS
GGCGACCGTCTTGGAAGTGG+TGG 0.574207 1:+73518598 MsG0180004110.01.T01:CDS
AGCTCATGGCCAGAGTTGGT+TGG 0.578782 1:+73513657 MsG0180004110.01.T01:CDS
AGCAGAAGCTACAATTCAGA+GGG 0.593359 1:+73513695 MsG0180004110.01.T01:CDS
TAGCAGAAGCTACAATTCAG+AGG 0.596029 1:+73513694 MsG0180004110.01.T01:CDS
CCTGTCGTTGCGTAAGTCGT+CGG 0.616539 1:-73513766 None:intergenic
CGACGACTTACGCAACGACA+GGG 0.619969 1:+73513767 MsG0180004110.01.T01:CDS
GGAGACGGTGGAGGAGTCGG+AGG 0.629928 1:+73518667 MsG0180004110.01.T01:CDS
GGTAACCGTCGTGGAGACGG+TGG 0.637501 1:+73518655 MsG0180004110.01.T01:CDS
GAGTGTAAAGAGGTTGATGA+TGG 0.641127 1:+73518476 MsG0180004110.01.T01:intron
GGAGTTAGTGGTGGATATGG+TGG 0.641258 1:+73518568 MsG0180004110.01.T01:CDS
ATCCACCACCACTTCCAAGA+CGG 0.643376 1:-73518603 None:intergenic
GGATGTCGTGGAGTTAGTGG+TGG 0.645337 1:+73518559 MsG0180004110.01.T01:CDS
ACAATGATGGCATTCACCAA+TGG 0.650325 1:-73513723 None:intergenic
AGTGGCTGTTGTGATGGAGG+TGG 0.657092 1:+73518706 MsG0180004110.01.T01:CDS
TATGGAGGTGGTAACCGTCG+TGG 0.658716 1:+73518646 MsG0180004110.01.T01:CDS
TGTGATGGAGGTGGATATGG+TGG 0.661831 1:+73518715 MsG0180004110.01.T01:CDS
CTCCTCCACCGTCTCCACGA+CGG 0.669007 1:-73518660 None:intergenic
AAAATGTCTGATGAATGCAA+AGG 0.675933 1:+73513526 MsG0180004110.01.T01:exon
TTTGAGGCTCAGAGTCGCGG+CGG 0.737746 1:+73518535 MsG0180004110.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTTCAAAGAAAAAAAA+AGG - Chr1:73518076-73518095 None:intergenic 10.0%
!! ATAAATTTAATGTTTCAATA+AGG + Chr1:73513886-73513905 MsG0180004110.01.T01:intron 10.0%
!! CAAATCAAATTATATATTAT+TGG - Chr1:73516212-73516231 None:intergenic 10.0%
!! GATATGAATAATAAATTAAA+TGG + Chr1:73513573-73513592 MsG0180004110.01.T01:intron 10.0%
!!! ATATTGATAATTTTTTTTAG+GGG - Chr1:73516581-73516600 None:intergenic 10.0%
!!! TATGTTTTTTTTTTTTTGTT+TGG - Chr1:73515209-73515228 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTGTCAA+GGG - Chr1:73516479-73516498 None:intergenic 10.0%
!! AAATTATCCTTATTAACTAT+TGG - Chr1:73515992-73516011 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG + Chr1:73515991-73516010 MsG0180004110.01.T01:intron 15.0%
!! ATATTTAAGTCCAATATTTA+CGG + Chr1:73516531-73516550 MsG0180004110.01.T01:intron 15.0%
!! ATTTAAGCCTTTAATAAATT+AGG - Chr1:73516879-73516898 None:intergenic 15.0%
!! GGTATATAAATTTGAAAAAT+GGG - Chr1:73516766-73516785 None:intergenic 15.0%
!! TATTTACTTGCATTTAATAA+AGG - Chr1:73518030-73518049 None:intergenic 15.0%
!! TGGTATATAAATTTGAAAAA+TGG - Chr1:73516767-73516786 None:intergenic 15.0%
!! TGTTTAATGTTTAATTAGAA+GGG + Chr1:73517155-73517174 MsG0180004110.01.T01:intron 15.0%
!! TTAAGAATGTATACTATATA+TGG - Chr1:73514229-73514248 None:intergenic 15.0%
!! TTGTTTAATGTTTAATTAGA+AGG + Chr1:73517154-73517173 MsG0180004110.01.T01:intron 15.0%
!!! AAAAAAAAGTTTTTAGGTTT+AGG - Chr1:73516730-73516749 None:intergenic 15.0%
!!! AAAAGTTATTAGACATTTTT+TGG - Chr1:73516404-73516423 None:intergenic 15.0%
!!! AAAGTTATTAGACATTTTTT+GGG - Chr1:73516403-73516422 None:intergenic 15.0%
!!! AACATTTAATTGATGATTAA+AGG + Chr1:73514349-73514368 MsG0180004110.01.T01:intron 15.0%
!!! AACTTTTCCTAATTTATTAA+AGG + Chr1:73516869-73516888 MsG0180004110.01.T01:intron 15.0%
!!! GGAAAAAATAACTTTTTATT+GGG + Chr1:73516437-73516456 MsG0180004110.01.T01:intron 15.0%
!!! GTTCAAATTTTGTAATTTAA+GGG - Chr1:73514995-73515014 None:intergenic 15.0%
!!! GTTTTTTTTTTTTTTTGTCA+AGG - Chr1:73516480-73516499 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACAT+TGG - Chr1:73515968-73515987 None:intergenic 15.0%
!!! TGGAAAAAATAACTTTTTAT+TGG + Chr1:73516436-73516455 MsG0180004110.01.T01:intron 15.0%
!!! TGTTCAAATTTTGTAATTTA+AGG - Chr1:73514996-73515015 None:intergenic 15.0%
!!! TTCCTCTATTTTTTAAAAAA+TGG + Chr1:73516254-73516273 MsG0180004110.01.T01:intron 15.0%
!!! TTTTTAAAGCTAATCAAAAA+TGG + Chr1:73515731-73515750 MsG0180004110.01.T01:intron 15.0%
!!! TTTTTTAAAAAATGGAGTTT+TGG + Chr1:73516262-73516281 MsG0180004110.01.T01:intron 15.0%
!!! TTTTTTTATTCATTCACATT+AGG - Chr1:73514568-73514587 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTGTCAAG+GGG - Chr1:73516478-73516497 None:intergenic 15.0%
!! AAAATAGTCATACATATTGA+AGG + Chr1:73513487-73513506 MsG0180004110.01.T01:five_prime_UTR 20.0%
!! AAACTAACCAATAGTTAATA+AGG + Chr1:73515982-73516001 MsG0180004110.01.T01:intron 20.0%
!! AAATACTAATCTAAGTATAC+TGG + Chr1:73514396-73514415 MsG0180004110.01.T01:intron 20.0%
!! AATGTATACTATATATGGAT+AGG - Chr1:73514224-73514243 None:intergenic 20.0%
!! AATTAATTGACCGTAAATAT+TGG - Chr1:73516544-73516563 None:intergenic 20.0%
!! AATTCAGGAAAATGTAAAAT+TGG - Chr1:73516292-73516311 None:intergenic 20.0%
!! AATTGCAAAAAGAAAGAAAA+AGG + Chr1:73513459-73513478 MsG0180004110.01.T01:five_prime_UTR 20.0%
!! AATTTGAAAAATGGGTAATT+TGG - Chr1:73516758-73516777 None:intergenic 20.0%
!! ACACGTTAAAAATAAACTAT+TGG - Chr1:73515356-73515375 None:intergenic 20.0%
!! AGAAAATGTTATTATTGCAT+TGG - Chr1:73515905-73515924 None:intergenic 20.0%
!! ATGTTGAAAATATAAACACA+TGG - Chr1:73515048-73515067 None:intergenic 20.0%
!! ATTTGAAAAATGGGTAATTT+GGG - Chr1:73516757-73516776 None:intergenic 20.0%
!! GAAACATTAAATTTATGACT+TGG - Chr1:73513882-73513901 None:intergenic 20.0%
!! GAATATTGATCAATTTCATT+TGG - Chr1:73514835-73514854 None:intergenic 20.0%
!! GAATTTGTGGATAAATTTAT+GGG - Chr1:73518357-73518376 None:intergenic 20.0%
!! TAGTAGTAGTATTGTTTAAT+TGG - Chr1:73517747-73517766 None:intergenic 20.0%
!! TATGAAAAAAATTACTTGCA+AGG - Chr1:73515707-73515726 None:intergenic 20.0%
!! TCTGTTTAAATCTCAAATTT+CGG - Chr1:73518206-73518225 None:intergenic 20.0%
!! TGAATTTGTGGATAAATTTA+TGG - Chr1:73518358-73518377 None:intergenic 20.0%
!! TTCTATAAATTTGAATCGTT+GGG - Chr1:73518296-73518315 None:intergenic 20.0%
!! TTTATTTGTGATTTCAACAA+CGG + Chr1:73518247-73518266 MsG0180004110.01.T01:intron 20.0%
!! TTTCTATAAATTTGAATCGT+TGG - Chr1:73518297-73518316 None:intergenic 20.0%
!!! AACTATTGGTTTTCTTTTTA+TGG - Chr1:73515342-73515361 None:intergenic 20.0%
!!! AATAGTTTATTTTTAACGTG+TGG + Chr1:73515355-73515374 MsG0180004110.01.T01:intron 20.0%
!!! ATCTGATAAATCAACATTTT+TGG + Chr1:73514519-73514538 MsG0180004110.01.T01:intron 20.0%
!!! CATTTTTTTATTAGAGTAGT+TGG + Chr1:73515484-73515503 MsG0180004110.01.T01:intron 20.0%
!!! CTCCATTTTTTAAAAAATAG+AGG - Chr1:73516259-73516278 None:intergenic 20.0%
!!! CTTTGAAAAAATATTGCAAT+TGG + Chr1:73516977-73516996 MsG0180004110.01.T01:intron 20.0%
!!! CTTTGAAAAAATATTGCAAT+TGG - Chr1:73516996-73516977 None:intergenic 20.0%
!!! GGAGAAAAAAAAAAGTTTTT+AGG - Chr1:73516736-73516755 None:intergenic 20.0%
!!! TCTGATAAATCAACATTTTT+GGG + Chr1:73514520-73514539 MsG0180004110.01.T01:intron 20.0%
!!! TTGGTTTTTTTTTTAACCTT+AGG + Chr1:73517884-73517903 MsG0180004110.01.T01:intron 20.0%
!!! TTTTTACCTTCTTTTTTTGA+GGG + Chr1:73515402-73515421 MsG0180004110.01.T01:intron 20.0%
!!! TTTTTTAAAATGCTCTTGAA+AGG - Chr1:73514037-73514056 None:intergenic 20.0%
!!! TTTTTTACCTTCTTTTTTTG+AGG + Chr1:73515401-73515420 MsG0180004110.01.T01:intron 20.0%
!!! TTTTTTTTTTTTGTTTGGCA+GGG - Chr1:73515204-73515223 None:intergenic 20.0%
!!! TTTTTTTTTTTTTGTTTGGC+AGG - Chr1:73515205-73515224 None:intergenic 20.0%
! AAATAGAGAGAACAATTACA+TGG + Chr1:73515114-73515133 MsG0180004110.01.T01:intron 25.0%
! AACAATGAAACTCTTAACTT+CGG - Chr1:73514451-73514470 None:intergenic 25.0%
! AACCATGTGTTAATATTGAA+AGG - Chr1:73515178-73515197 None:intergenic 25.0%
! AATAGAGAGAACAATTACAT+GGG + Chr1:73515115-73515134 MsG0180004110.01.T01:intron 25.0%
! AGCCAAACAAAAAAAAATGT+AGG + Chr1:73517954-73517973 MsG0180004110.01.T01:intron 25.0%
! CAATGTATAAGCTAAACTAA+TGG + Chr1:73517334-73517353 MsG0180004110.01.T01:intron 25.0%
! CGATTACCTTAAAAAAAACA+CGG + Chr1:73517361-73517380 MsG0180004110.01.T01:intron 25.0%
! CTAAAATGAGATTGAGATTA+GGG - Chr1:73516320-73516339 None:intergenic 25.0%
! GAAGTTAAAGATATGTAGTT+GGG - Chr1:73516657-73516676 None:intergenic 25.0%
! GCCAAACAAAAAAAAATGTA+GGG + Chr1:73517955-73517974 MsG0180004110.01.T01:intron 25.0%
! TAAAGGCTTAAATGTGTAAT+TGG + Chr1:73516886-73516905 MsG0180004110.01.T01:intron 25.0%
! TAAAGGCTTAAATGTGTAAT+TGG - Chr1:73516905-73516886 None:intergenic 25.0%
! TAATCACAATAGAAACTAAC+AGG + Chr1:73516698-73516717 MsG0180004110.01.T01:intron 25.0%
! TACATATTGAAGGATCAAAA+AGG + Chr1:73513497-73513516 MsG0180004110.01.T01:five_prime_UTR 25.0%
! TAGGGATGAATATATTAGTT+TGG - Chr1:73518383-73518402 None:intergenic 25.0%
! TCTAGTAAGTAGTATACAAT+TGG - Chr1:73513925-73513944 None:intergenic 25.0%
! TGAAGTTAAAGATATGTAGT+TGG - Chr1:73516658-73516677 None:intergenic 25.0%
! TGAGAAAATTACTACAACAT+AGG + Chr1:73514911-73514930 MsG0180004110.01.T01:intron 25.0%
! TTAAAGCTAATCAAAAATGG+CGG + Chr1:73515734-73515753 MsG0180004110.01.T01:intron 25.0%
! TTAGTGGTAAATACTCTAAA+GGG + Chr1:73515656-73515675 MsG0180004110.01.T01:intron 25.0%
! TTCCTTTCAATATTAACACA+TGG + Chr1:73515173-73515192 MsG0180004110.01.T01:intron 25.0%
! TTGAAAAAGTTTAGATACGT+TGG - Chr1:73514751-73514770 None:intergenic 25.0%
!! AATTAGTGGTTTTCATGTTT+TGG - Chr1:73518168-73518187 None:intergenic 25.0%
!! AGGGATGAATATATTAGTTT+GGG - Chr1:73518382-73518401 None:intergenic 25.0%
!! AGTTTAGCTTATACATTGAA+TGG - Chr1:73517332-73517351 None:intergenic 25.0%
!! ATTAGTGGTTTTCATGTTTT+GGG - Chr1:73518167-73518186 None:intergenic 25.0%
!! CTAATCTCAATCTCATTTTA+GGG + Chr1:73516319-73516338 MsG0180004110.01.T01:intron 25.0%
!! GAGTTCAATTTAACTTTGTT+AGG - Chr1:73516803-73516822 None:intergenic 25.0%
!! TTAGAGTTTTTCTTCTGTTT+TGG + Chr1:73517684-73517703 MsG0180004110.01.T01:intron 25.0%
!!! ATAGGGTTTTTTTTAACCTT+AGG - Chr1:73517015-73517034 None:intergenic 25.0%
!!! CAATATTTTTTCAAAGTGCA+GGG + Chr1:73517926-73517945 MsG0180004110.01.T01:intron 25.0%
!!! CAATATTTTTTCAAAGTGCA+GGG - Chr1:73517945-73517926 None:intergenic 25.0%
!!! GAAGTTTTAGTATATAAACC+TGG + Chr1:73514153-73514172 MsG0180004110.01.T01:intron 25.0%
!!! GTTAAATTGGTTTGAATTAG+TGG - Chr1:73518182-73518201 None:intergenic 25.0%
!!! GTTGAAATTGATTTTATGGA+TGG + Chr1:73517562-73517581 MsG0180004110.01.T01:intron 25.0%
!!! GTTTCATCTCTTTTTGTTTT+TGG + Chr1:73516231-73516250 MsG0180004110.01.T01:intron 25.0%
!!! GTTTTTTATTTTCTATGCCA+AGG + Chr1:73516157-73516176 MsG0180004110.01.T01:intron 25.0%
!!! GTTTTTTTTAAGGTAATCGT+TGG - Chr1:73517360-73517379 None:intergenic 25.0%
!!! TCCCTACATTTTTTTTTGTT+TGG - Chr1:73517959-73517978 None:intergenic 25.0%
!!! TTCTGTTTTTCTTCTGTTAA+TGG - Chr1:73517391-73517410 None:intergenic 25.0%
!!! TTTTACCTTCTTTTTTTGAG+GGG + Chr1:73515403-73515422 MsG0180004110.01.T01:intron 25.0%
AAAATGTCTGATGAATGCAA+AGG + Chr1:73513526-73513545 MsG0180004110.01.T01:exon 30.0%
AAGCATGAAGAAATGTAGAA+GGG + Chr1:73515284-73515303 MsG0180004110.01.T01:intron 30.0%
AATCGAAACTTGATGAATGA+AGG + Chr1:73517597-73517616 MsG0180004110.01.T01:intron 30.0%
ACAAATGAATGAAAGGGTTA+TGG + Chr1:73515426-73515445 MsG0180004110.01.T01:intron 30.0%
ACAATGAAACTCTTAACTTC+GGG - Chr1:73514450-73514469 None:intergenic 30.0%
ACATCCTTGAATGAAATGTA+TGG + Chr1:73514624-73514643 MsG0180004110.01.T01:intron 30.0%
ACCATTATTAGTGCATGTTA+AGG + Chr1:73515309-73515328 MsG0180004110.01.T01:intron 30.0%
ATAACTCCAACATGAATGAA+AGG + Chr1:73515085-73515104 MsG0180004110.01.T01:intron 30.0%
CAAAATATCCTTGCAATTAC+GGG - Chr1:73516510-73516529 None:intergenic 30.0%
CAAACTCATTGAATATAAGC+TGG + Chr1:73517194-73517213 MsG0180004110.01.T01:intron 30.0%
CAAATGAATGAAAGGGTTAT+GGG + Chr1:73515427-73515446 MsG0180004110.01.T01:intron 30.0%
CAGTGTCATATATAATTCCT+TGG - Chr1:73516177-73516196 None:intergenic 30.0%
CATAAGCGTAATAGAAATCA+TGG + Chr1:73515225-73515244 MsG0180004110.01.T01:intron 30.0%
CCATTATTAGTGCATGTTAA+GGG + Chr1:73515310-73515329 MsG0180004110.01.T01:intron 30.0%
CCTAAAATGAGATTGAGATT+AGG - Chr1:73516321-73516340 None:intergenic 30.0%
CTTAGTGGTAAATACTCTAA+AGG + Chr1:73515655-73515674 MsG0180004110.01.T01:intron 30.0%
CTTGATAAATAACTGAACAG+GGG + Chr1:73514601-73514620 MsG0180004110.01.T01:intron 30.0%
GAAAATTACTACAACATAGG+AGG + Chr1:73514914-73514933 MsG0180004110.01.T01:intron 30.0%
GAAGTTAAGAGTTTCATTGT+TGG + Chr1:73514450-73514469 MsG0180004110.01.T01:intron 30.0%
GAATGAAGGACAAAATTGAA+TGG + Chr1:73517611-73517630 MsG0180004110.01.T01:intron 30.0%
GATTAGGGTTAATCAAAGAT+GGG + Chr1:73515757-73515776 MsG0180004110.01.T01:intron 30.0%
GCAAAATATCCTTGCAATTA+CGG - Chr1:73516511-73516530 None:intergenic 30.0%
GCTTGATAAATAACTGAACA+GGG + Chr1:73514600-73514619 MsG0180004110.01.T01:intron 30.0%
GTTAATCAAAGATGGGATTA+GGG + Chr1:73515764-73515783 MsG0180004110.01.T01:intron 30.0%
TAAAAAACCTGCTACAACAA+AGG - Chr1:73517266-73517285 None:intergenic 30.0%
TAAAGCTAATCAAAAATGGC+GGG + Chr1:73515735-73515754 MsG0180004110.01.T01:intron 30.0%
TAATTCACCAAAAACTTGTG+TGG + Chr1:73515632-73515651 MsG0180004110.01.T01:intron 30.0%
TAGTGACAAAGATTACAGAT+GGG + Chr1:73515602-73515621 MsG0180004110.01.T01:intron 30.0%
TCGAACCAAAATGAGATAAA+TGG + Chr1:73514942-73514961 MsG0180004110.01.T01:intron 30.0%
TGAAGAAATGAGAGAACAAT+GGG + Chr1:73518499-73518518 MsG0180004110.01.T01:CDS 30.0%
TGCTTGATAAATAACTGAAC+AGG + Chr1:73514599-73514618 MsG0180004110.01.T01:intron 30.0%
TTAGTGACAAAGATTACAGA+TGG + Chr1:73515601-73515620 MsG0180004110.01.T01:intron 30.0%
TTCATTCATGTTGGAGTTAT+AGG - Chr1:73515085-73515104 None:intergenic 30.0%
TTTAACCTTAGGTTAACAGA+AGG + Chr1:73517895-73517914 MsG0180004110.01.T01:intron 30.0%
TTTAACCTTAGGTTAACAGA+AGG - Chr1:73517914-73517895 None:intergenic 30.0%
TTTGCAATTCTTCTTGTGTT+TGG - Chr1:73513448-73513467 None:intergenic 30.0%
! AGCCAAACAAAAAAAAGTGT+AGG - Chr1:73516945-73516964 None:intergenic 30.0%
! CAAAAATTGGTGAAAGTACA+AGG + Chr1:73517986-73518005 MsG0180004110.01.T01:intron 30.0%
! CCTAATCTCAATCTCATTTT+AGG + Chr1:73516318-73516337 MsG0180004110.01.T01:intron 30.0%
! CTTGTACTTTCACCAATTTT+TGG - Chr1:73517988-73518007 None:intergenic 30.0%
! GCCAAACAAAAAAAAGTGTA+GGG - Chr1:73516944-73516963 None:intergenic 30.0%
! GCTTTCCATTTATCTCATTT+TGG - Chr1:73514950-73514969 None:intergenic 30.0%
! TAACTTTTGCATAGTCAAGT+TGG + Chr1:73516416-73516435 MsG0180004110.01.T01:intron 30.0%
! TGTTAGGAAAATGTGTGTTT+TGG - Chr1:73516787-73516806 None:intergenic 30.0%
! TGTTTTCCTTTCATTCATGT+TGG - Chr1:73515094-73515113 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + Chr1:73516074-73516093 MsG0180004110.01.T01:intron 30.0%
!! AATGAGTTTGCTGTTATTAG+GGG - Chr1:73517184-73517203 None:intergenic 30.0%
!! ATTAGTTTGGGTTGAATTTG+TGG - Chr1:73518370-73518389 None:intergenic 30.0%
!! CAATGAGTTTGCTGTTATTA+GGG - Chr1:73517185-73517204 None:intergenic 30.0%
!! CTAATTGCAAAGTGTTGTTA+GGG - Chr1:73518401-73518420 None:intergenic 30.0%
!! CTCAAATTTCGGTGTTAAAT+TGG - Chr1:73518195-73518214 None:intergenic 30.0%
!! GAAATTGATTTTATGGATGG+AGG + Chr1:73517565-73517584 MsG0180004110.01.T01:intron 30.0%
!! GGAGGTTGAAATTGATTTTA+TGG + Chr1:73517558-73517577 MsG0180004110.01.T01:intron 30.0%
!! TAGAACTTGAGAAGCATTTA+GGG + Chr1:73514873-73514892 MsG0180004110.01.T01:intron 30.0%
!! TCAATGAGTTTGCTGTTATT+AGG - Chr1:73517186-73517205 None:intergenic 30.0%
!! TCTAATTGCAAAGTGTTGTT+AGG - Chr1:73518402-73518421 None:intergenic 30.0%
!!! GCAATATTTTTTCAAAGTGC+AGG + Chr1:73517925-73517944 MsG0180004110.01.T01:intron 30.0%
!!! GCAATATTTTTTCAAAGTGC+AGG - Chr1:73517944-73517925 None:intergenic 30.0%
!!! GGATATCCGTGTTTTTTTTA+AGG - Chr1:73517370-73517389 None:intergenic 30.0%
!!! TCCCTACACTTTTTTTTGTT+TGG + Chr1:73516940-73516959 MsG0180004110.01.T01:intron 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - Chr1:73516073-73516092 None:intergenic 30.0%
!!! TTTCTTCTGTTTTGGTCTTT+TGG + Chr1:73517692-73517711 MsG0180004110.01.T01:intron 30.0%
AAAAACTCTAACGACGAGAA+AGG - Chr1:73517675-73517694 None:intergenic 35.0%
AAAACAGAAACGCAACTCAA+CGG + Chr1:73517402-73517421 MsG0180004110.01.T01:intron 35.0%
AAAACGCATTTCAGTGGTAA+AGG + Chr1:73517442-73517461 MsG0180004110.01.T01:intron 35.0%
AAAACTCTAACGACGAGAAA+GGG - Chr1:73517674-73517693 None:intergenic 35.0%
AAACGCATTTCAGTGGTAAA+GGG + Chr1:73517443-73517462 MsG0180004110.01.T01:intron 35.0%
AAATGAGATTGAGATTAGGG+TGG - Chr1:73516317-73516336 None:intergenic 35.0%
AACAATTACATGGGAAAGAG+AGG + Chr1:73515124-73515143 MsG0180004110.01.T01:intron 35.0%
AACGTGTGGATCAATTTGAA+TGG + Chr1:73515369-73515388 MsG0180004110.01.T01:intron 35.0%
AATGCTTCTCAAGTTCTACA+AGG - Chr1:73514871-73514890 None:intergenic 35.0%
ACCACCATACATTTCATTCA+AGG - Chr1:73514631-73514650 None:intergenic 35.0%
ACTTCATCTTCAACCTTCAT+AGG + Chr1:73518110-73518129 MsG0180004110.01.T01:intron 35.0%
AGTATATAAACCTGGTGCAA+AGG + Chr1:73514161-73514180 MsG0180004110.01.T01:intron 35.0%
AGTGACAAAGATTACAGATG+GGG + Chr1:73515603-73515622 MsG0180004110.01.T01:intron 35.0%
CCCTTAACATGCACTAATAA+TGG - Chr1:73515313-73515332 None:intergenic 35.0%
CGAAATTGAATTAACGATGG+AGG + Chr1:73517540-73517559 MsG0180004110.01.T01:intron 35.0%
CTTCATCTTCAACCTTCATA+GGG + Chr1:73518111-73518130 MsG0180004110.01.T01:intron 35.0%
GAAGCATGAAGAAATGTAGA+AGG + Chr1:73515283-73515302 MsG0180004110.01.T01:intron 35.0%
GACACTTTCTATCCAATTGT+TGG - Chr1:73513834-73513853 None:intergenic 35.0%
GCCAAAATGCTCATATTTCA+TGG + Chr1:73514250-73514269 MsG0180004110.01.T01:intron 35.0%
GGAGATTTACCTTTAACATG+TGG + Chr1:73515145-73515164 MsG0180004110.01.T01:intron 35.0%
GGATTAGGGTTAATCAAAGA+TGG + Chr1:73515756-73515775 MsG0180004110.01.T01:intron 35.0%
GGTTAATCAAAGATGGGATT+AGG + Chr1:73515763-73515782 MsG0180004110.01.T01:intron 35.0%
GTGAAGAAATGAGAGAACAA+TGG + Chr1:73518498-73518517 MsG0180004110.01.T01:CDS 35.0%
TAAAGATGGAATTGTCACTC+AGG + Chr1:73513806-73513825 MsG0180004110.01.T01:intron 35.0%
TAGGGACTAATGCCAAAAAT+TGG + Chr1:73517973-73517992 MsG0180004110.01.T01:intron 35.0%
TCCTTGAATGAAATGTATGG+TGG + Chr1:73514627-73514646 MsG0180004110.01.T01:intron 35.0%
TCGCGAAATTGAATTAACGA+TGG + Chr1:73517537-73517556 MsG0180004110.01.T01:intron 35.0%
TCTGCTGAATAAGAAGTCTA+GGG + Chr1:73514192-73514211 MsG0180004110.01.T01:intron 35.0%
TCTTAACTTCGGGAACTAAT+AGG - Chr1:73514440-73514459 None:intergenic 35.0%
TGTGGATCAATTTGAATGGA+TGG + Chr1:73515373-73515392 MsG0180004110.01.T01:intron 35.0%
TTCTGCTGAATAAGAAGTCT+AGG + Chr1:73514191-73514210 MsG0180004110.01.T01:intron 35.0%
TTGAATCGTTGGGTTTCATT+CGG - Chr1:73518286-73518305 None:intergenic 35.0%
TTGTGTCTTGATAAAGAGAG+TGG - Chr1:73516851-73516870 None:intergenic 35.0%
TTTGTCCCCTCAAAAAAAGA+AGG - Chr1:73515411-73515430 None:intergenic 35.0%
! AATCAAAAATGGCGGGATTA+GGG + Chr1:73515742-73515761 MsG0180004110.01.T01:intron 35.0%
! AGGGGGAAGAAAATGATTTT+AGG - Chr1:73517655-73517674 None:intergenic 35.0%
! GCCATGAAATATGAGCATTT+TGG - Chr1:73514254-73514273 None:intergenic 35.0%
! GGGGGAAGAAAATGATTTTA+GGG - Chr1:73517654-73517673 None:intergenic 35.0%
! GGTTATGGGTAACTTTTAGT+GGG + Chr1:73515441-73515460 MsG0180004110.01.T01:intron 35.0%
! GTAACTTTTAGTGGGATAGT+GGG + Chr1:73515449-73515468 MsG0180004110.01.T01:intron 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - Chr1:73515943-73515962 None:intergenic 35.0%
! TAATCAAAAATGGCGGGATT+AGG + Chr1:73515741-73515760 MsG0180004110.01.T01:intron 35.0%
! TAGAAGTCTTGGCTTTCATA+GGG - Chr1:73514668-73514687 None:intergenic 35.0%
! TGATTTGTGTGAGTGTAAAG+AGG + Chr1:73518466-73518485 MsG0180004110.01.T01:intron 35.0%
! TGGGTTTGGGTTAATAAAGA+TGG + Chr1:73513792-73513811 MsG0180004110.01.T01:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - Chr1:73515939-73515958 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - Chr1:73515839-73515858 None:intergenic 35.0%
!! ATGAGTTTGCTGTTATTAGG+GGG - Chr1:73517183-73517202 None:intergenic 35.0%
!! CAATTGGATAGAAAGTGTCA+TGG + Chr1:73513835-73513854 MsG0180004110.01.T01:intron 35.0%
!! CTACCATGTTGATTGATTTG+TGG - Chr1:73517242-73517261 None:intergenic 35.0%
!! GTAGAACTTGAGAAGCATTT+AGG + Chr1:73514872-73514891 MsG0180004110.01.T01:intron 35.0%
!!! TTTCATGTTTTGGGTTACGT+GGG - Chr1:73518158-73518177 None:intergenic 35.0%
!!! TTTTCATGTTTTGGGTTACG+TGG - Chr1:73518159-73518178 None:intergenic 35.0%
AAAACTAATTGTGTGCCACG+TGG - Chr1:73517865-73517884 None:intergenic 40.0%
AAACGAAAGCGACGGTAAAA+TGG + Chr1:73517469-73517488 MsG0180004110.01.T01:intron 40.0%
AAACTCTAACGACGAGAAAG+GGG - Chr1:73517673-73517692 None:intergenic 40.0%
AATGAGAGAACAATGGGAAG+AGG + Chr1:73518505-73518524 MsG0180004110.01.T01:CDS 40.0%
AATGCCATCATTGTGCTAGA+AGG + Chr1:73513732-73513751 MsG0180004110.01.T01:CDS 40.0%
AATTCAGAGGGAGAATCCAT+TGG + Chr1:73513707-73513726 MsG0180004110.01.T01:CDS 40.0%
ACAATGATGGCATTCACCAA+TGG - Chr1:73513726-73513745 None:intergenic 40.0%
ACCAATTATTACACGCCACA+TGG + Chr1:73517056-73517075 MsG0180004110.01.T01:intron 40.0%
ACCAATTATTACACGCCACA+TGG - Chr1:73517075-73517056 None:intergenic 40.0%
AGATCCTTCTAGCACAATGA+TGG - Chr1:73513739-73513758 None:intergenic 40.0%
AGCAGAAGCTACAATTCAGA+GGG + Chr1:73513695-73513714 MsG0180004110.01.T01:CDS 40.0%
ATAAAGAGAGTGGAGGATCA+GGG - Chr1:73516841-73516860 None:intergenic 40.0%
CAAAAACTTGTGTGGCTTAG+TGG + Chr1:73515640-73515659 MsG0180004110.01.T01:intron 40.0%
CTTGCACTTTCACCAATTTC+TGG + Chr1:73516911-73516930 MsG0180004110.01.T01:intron 40.0%
GAAATTCTATCCTTTGCACC+AGG - Chr1:73514174-73514193 None:intergenic 40.0%
GAGATTAGGGTGGAAAATTC+AGG - Chr1:73516307-73516326 None:intergenic 40.0%
GAGGGGACAAATGAATGAAA+GGG + Chr1:73515420-73515439 MsG0180004110.01.T01:intron 40.0%
GGAAAACTGCCACATGTTAA+AGG - Chr1:73515157-73515176 None:intergenic 40.0%
GTCTGATGAATGCAAAGGTA+AGG + Chr1:73513531-73513550 MsG0180004110.01.T01:intron 40.0%
GTGGCACACAGTTAGTTATA+GGG - Chr1:73517032-73517051 None:intergenic 40.0%
TAACTGATCCAATCCAGTAG+TGG + Chr1:73515527-73515546 MsG0180004110.01.T01:intron 40.0%
TAGCAGAAGCTACAATTCAG+AGG + Chr1:73513694-73513713 MsG0180004110.01.T01:CDS 40.0%
TAGGGACTAATGCCAGAAAT+TGG - Chr1:73516926-73516945 None:intergenic 40.0%
TGAGGGGACAAATGAATGAA+AGG + Chr1:73515419-73515438 MsG0180004110.01.T01:intron 40.0%
TGTCTTGATAAAGAGAGTGG+AGG - Chr1:73516848-73516867 None:intergenic 40.0%
TTGGTCCTTCTGTTAACCTA+AGG + Chr1:73516996-73517015 MsG0180004110.01.T01:intron 40.0%
TTGGTCCTTCTGTTAACCTA+AGG - Chr1:73517015-73516996 None:intergenic 40.0%
TTTCATTTGCCAAGCTTGAG+AGG - Chr1:73514480-73514499 None:intergenic 40.0%
TTTCTGACATGCAGTGAGTA+TGG - Chr1:73514299-73514318 None:intergenic 40.0%
! ACAAATTTTCCCCTCTTCGA+CGG - Chr1:73515252-73515271 None:intergenic 40.0%
! CACTAAGCCACACAAGTTTT+TGG - Chr1:73515642-73515661 None:intergenic 40.0%
! CAGAAATTGGTGAAAGTGCA+AGG - Chr1:73516913-73516932 None:intergenic 40.0%
! GGGTTATGGGTAACTTTTAG+TGG + Chr1:73515440-73515459 MsG0180004110.01.T01:intron 40.0%
! GGTAACTTTTAGTGGGATAG+TGG + Chr1:73515448-73515467 MsG0180004110.01.T01:intron 40.0%
! GTAGAAGTCTTGGCTTTCAT+AGG - Chr1:73514669-73514688 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - Chr1:73515940-73515959 None:intergenic 40.0%
! TTGTCTTTTAGTGTGCCATG+TGG + Chr1:73517824-73517843 MsG0180004110.01.T01:intron 40.0%
! TTGTCTTTTAGTGTGCCATG+TGG - Chr1:73517843-73517824 None:intergenic 40.0%
!! GAGTGTAAAGAGGTTGATGA+TGG + Chr1:73518476-73518495 MsG0180004110.01.T01:intron 40.0%
!!! CGTGGCACACAATTAGTTTT+TGG + Chr1:73517865-73517884 MsG0180004110.01.T01:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + Chr1:73516078-73516097 MsG0180004110.01.T01:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - Chr1:73516097-73516078 None:intergenic 40.0%
AAATCATGGACCGTCGAAGA+GGG + Chr1:73515239-73515258 MsG0180004110.01.T01:intron 45.0%
AACTCTAACGACGAGAAAGG+GGG - Chr1:73517672-73517691 None:intergenic 45.0%
AAGGGATCAAACGAAAGCGA+CGG + Chr1:73517461-73517480 MsG0180004110.01.T01:intron 45.0%
AAGGGTGATCATTTGCAACC+TGG + Chr1:73515674-73515693 MsG0180004110.01.T01:intron 45.0%
AGAACAATGGGAAGAGGTTG+AGG + Chr1:73518511-73518530 MsG0180004110.01.T01:CDS 45.0%
AGCATGAAGTACATGTTCGC+AGG - Chr1:73515582-73515601 None:intergenic 45.0%
ATAACTAACTGTGTGCCACG+TGG + Chr1:73517033-73517052 MsG0180004110.01.T01:intron 45.0%
CAAAGTGACCCGTAATTGCA+AGG + Chr1:73516499-73516518 MsG0180004110.01.T01:intron 45.0%
CGTGGCACACAGTTAGTTAT+AGG - Chr1:73517033-73517052 None:intergenic 45.0%
CGTGTAATAATTGGTCCACG+TGG + Chr1:73517847-73517866 MsG0180004110.01.T01:intron 45.0%
CGTGTAATAATTGGTCCACG+TGG - Chr1:73517866-73517847 None:intergenic 45.0%
GATAAAGAGAGTGGAGGATC+AGG - Chr1:73516842-73516861 None:intergenic 45.0%
GCCATGTGGCGTGTAATAAT+TGG + Chr1:73517838-73517857 MsG0180004110.01.T01:intron 45.0%
GCCATGTGGCGTGTAATAAT+TGG - Chr1:73517857-73517838 None:intergenic 45.0%
GGGCCACAAATCAATCAACA+TGG + Chr1:73517236-73517255 MsG0180004110.01.T01:intron 45.0%
GTCACTCAGGTTCCAACAAT+TGG + Chr1:73513819-73513838 MsG0180004110.01.T01:intron 45.0%
GTTGACGCTTCTTCAACCTT+GGG + Chr1:73517216-73517235 MsG0180004110.01.T01:intron 45.0%
TAAAGAGAGTGGAGGATCAG+GGG - Chr1:73516840-73516859 None:intergenic 45.0%
TACTTGCAAGGAGTTGAACC+AGG - Chr1:73515695-73515714 None:intergenic 45.0%
TCCACTGCATGTAGAAGTCT+TGG - Chr1:73514679-73514698 None:intergenic 45.0%
TGTTCTCAGCTAAGAGCTCA+TGG + Chr1:73513643-73513662 MsG0180004110.01.T01:intron 45.0%
! GAAATGTATGGTGGTGAGAC+TGG + Chr1:73514636-73514655 MsG0180004110.01.T01:intron 45.0%
! TGGTAGTCCTTTGTTGTAGC+AGG + Chr1:73517256-73517275 MsG0180004110.01.T01:intron 45.0%
! TGTTGTGATGGAGGTGGATA+TGG + Chr1:73518712-73518731 MsG0180004110.01.T01:CDS 45.0%
!! GTTGATTGATTTGTGGCCCA+AGG - Chr1:73517235-73517254 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + Chr1:73516077-73516096 MsG0180004110.01.T01:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - Chr1:73516096-73516077 None:intergenic 45.0%
!!! AAATATTGATAATTTTTTTT+AGG - Chr1:73516583-73516602 None:intergenic 5.0%
!!! AAATTTTTATTATAATTTGA+TGG + Chr1:73513602-73513621 MsG0180004110.01.T01:intron 5.0%
!!! AATATTGATAATTTTTTTTA+GGG - Chr1:73516582-73516601 None:intergenic 5.0%
AATCATGGACCGTCGAAGAG+GGG + Chr1:73515240-73515259 MsG0180004110.01.T01:intron 50.0%
ACCGCGAACAGAATCGAGAA+CGG + Chr1:73517506-73517525 MsG0180004110.01.T01:intron 50.0%
ACTTACGCAACGACAGGGTT+TGG + Chr1:73513772-73513791 MsG0180004110.01.T01:intron 50.0%
ATCCAATCCAGTAGTGGTCG+TGG + Chr1:73515533-73515552 MsG0180004110.01.T01:intron 50.0%
ATCCACCACCACTTCCAAGA+CGG - Chr1:73518606-73518625 None:intergenic 50.0%
CGACGGTAAAATGGCGACAT+AGG + Chr1:73517478-73517497 MsG0180004110.01.T01:intron 50.0%
CTTACGCAACGACAGGGTTT+GGG + Chr1:73513773-73513792 MsG0180004110.01.T01:intron 50.0%
GAAATCATGGACCGTCGAAG+AGG + Chr1:73515238-73515257 MsG0180004110.01.T01:intron 50.0%
GCCAAGACTTCTACATGCAG+TGG + Chr1:73514675-73514694 MsG0180004110.01.T01:intron 50.0%
GGTTGACGCTTCTTCAACCT+TGG + Chr1:73517215-73517234 MsG0180004110.01.T01:intron 50.0%
GTTGGCATTCCTCTCAAGCT+TGG + Chr1:73514468-73514487 MsG0180004110.01.T01:intron 50.0%
GTTGGTTGGAGTGGAAGGAA+AGG + Chr1:73513671-73513690 MsG0180004110.01.T01:CDS 50.0%
TAAGAGCTCATGGCCAGAGT+TGG + Chr1:73513653-73513672 MsG0180004110.01.T01:CDS 50.0%
TAATAGACCCGTGCAACGCA+CGG - Chr1:73513956-73513975 None:intergenic 50.0%
TTCATAGGGTCAGTTCGACC+CGG + Chr1:73518125-73518144 MsG0180004110.01.T01:intron 50.0%
! CAACGACAGGGTTTGGGTTT+GGG + Chr1:73513779-73513798 MsG0180004110.01.T01:intron 50.0%
! GGATATGGTGGAGGAGACAT+GGG + Chr1:73518622-73518641 MsG0180004110.01.T01:CDS 50.0%
! TGGATATGGTGGAGGAGACA+TGG + Chr1:73518621-73518640 MsG0180004110.01.T01:CDS 50.0%
! TGTGATGGAGGTGGATATGG+TGG + Chr1:73518715-73518734 MsG0180004110.01.T01:CDS 50.0%
!! CGTGGAGTTAGTGGTGGATA+TGG + Chr1:73518565-73518584 MsG0180004110.01.T01:CDS 50.0%
!! CTTGGAAGTGGTGGTGGATA+TGG + Chr1:73518607-73518626 MsG0180004110.01.T01:CDS 50.0%
!! GGAGTTAGTGGTGGATATGG+TGG + Chr1:73518568-73518587 MsG0180004110.01.T01:CDS 50.0%
AATAGACCCGTGCAACGCAC+GGG - Chr1:73513955-73513974 None:intergenic 55.0%
CCCGTTCTCGATTCTGTTCG+CGG - Chr1:73517510-73517529 None:intergenic 55.0%
CCGCGAACAGAATCGAGAAC+GGG + Chr1:73517507-73517526 MsG0180004110.01.T01:intron 55.0%
CCTGTCGTTGCGTAAGTCGT+CGG - Chr1:73513769-73513788 None:intergenic 55.0%
CCTTCCACTCCAACCAACTC+TGG - Chr1:73513669-73513688 None:intergenic 55.0%
CGACGACTTACGCAACGACA+GGG + Chr1:73513767-73513786 MsG0180004110.01.T01:CDS 55.0%
GGATGTCGTGGAGTTAGTGG+TGG + Chr1:73518559-73518578 MsG0180004110.01.T01:CDS 55.0%
GGGAAGAGGTTGAGGCTTTG+AGG + Chr1:73518519-73518538 MsG0180004110.01.T01:CDS 55.0%
GGGTCGAACTGACCCTATGA+AGG - Chr1:73518126-73518145 None:intergenic 55.0%
GGGTTACGTGGGTCTTCAAC+CGG - Chr1:73518147-73518166 None:intergenic 55.0%
GGTGGATGTCGTGGAGTTAG+TGG + Chr1:73518556-73518575 MsG0180004110.01.T01:CDS 55.0%
GGTTACGTGGGTCTTCAACC+GGG - Chr1:73518146-73518165 None:intergenic 55.0%
GTACATGCCACGACCACTAC+TGG - Chr1:73515543-73515562 None:intergenic 55.0%
TATGGAGGTGGTAACCGTCG+TGG + Chr1:73518646-73518665 MsG0180004110.01.T01:CDS 55.0%
TGCCACGACCACTACTGGAT+TGG - Chr1:73515538-73515557 None:intergenic 55.0%
! AGCTCATGGCCAGAGTTGGT+TGG + Chr1:73513657-73513676 MsG0180004110.01.T01:CDS 55.0%
! AGTGGCTGTTGTGATGGAGG+TGG + Chr1:73518706-73518725 MsG0180004110.01.T01:CDS 55.0%
! ATGGCCAGAGTTGGTTGGAG+TGG + Chr1:73513662-73513681 MsG0180004110.01.T01:CDS 55.0%
! CCAGAGTTGGTTGGAGTGGA+AGG + Chr1:73513666-73513685 MsG0180004110.01.T01:CDS 55.0%
! GCAACGACAGGGTTTGGGTT+TGG + Chr1:73513778-73513797 MsG0180004110.01.T01:intron 55.0%
! GGAGACATGGGTTATGGAGG+TGG + Chr1:73518634-73518653 MsG0180004110.01.T01:CDS 55.0%
! GGAGGAGACATGGGTTATGG+AGG + Chr1:73518631-73518650 MsG0180004110.01.T01:CDS 55.0%
! GGTGGAGGAGACATGGGTTA+TGG + Chr1:73518628-73518647 MsG0180004110.01.T01:CDS 55.0%
!! AGTGGTGGATATGGTGGCAG+AGG + Chr1:73518574-73518593 MsG0180004110.01.T01:CDS 55.0%
!! AGTGGTGGTGGATATGGTGG+AGG + Chr1:73518613-73518632 MsG0180004110.01.T01:CDS 55.0%
!! GGAAGTGGTGGTGGATATGG+TGG + Chr1:73518610-73518629 MsG0180004110.01.T01:CDS 55.0%
CCGACGACTTACGCAACGAC+AGG + Chr1:73513766-73513785 MsG0180004110.01.T01:CDS 60.0%
CTTTCGACCCGTGCGTTGCA+CGG + Chr1:73513945-73513964 MsG0180004110.01.T01:intron 60.0%
GACCGTCTTGGAAGTGGTGG+TGG + Chr1:73518601-73518620 MsG0180004110.01.T01:CDS 60.0%
GGCAGTGGCTGTTGTGATGG+AGG + Chr1:73518703-73518722 MsG0180004110.01.T01:CDS 60.0%
GGTGGATATGGTGGCAGAGG+CGG + Chr1:73518577-73518596 MsG0180004110.01.T01:CDS 60.0%
GGTGGTAACCGTCGTGGAGA+CGG + Chr1:73518652-73518671 MsG0180004110.01.T01:CDS 60.0%
TTTCGACCCGTGCGTTGCAC+GGG + Chr1:73513946-73513965 MsG0180004110.01.T01:intron 60.0%
! GGTGGAGGAGTCGGAGGTTT+TGG + Chr1:73518673-73518692 MsG0180004110.01.T01:CDS 60.0%
! TTTGAGGCTCAGAGTCGCGG+CGG + Chr1:73518535-73518554 MsG0180004110.01.T01:CDS 60.0%
!! GGAGGAGTCGGAGGTTTTGG+AGG + Chr1:73518676-73518695 MsG0180004110.01.T01:CDS 60.0%
!! GGCTTTGAGGCTCAGAGTCG+CGG + Chr1:73518532-73518551 MsG0180004110.01.T01:CDS 60.0%
!!! GGAGTCGGAGGTTTTGGAGG+TGG + Chr1:73518679-73518698 MsG0180004110.01.T01:CDS 60.0%
!!! GTCGGAGGTTTTGGAGGTGG+CGG + Chr1:73518682-73518701 MsG0180004110.01.T01:CDS 60.0%
AACCGTCGTGGAGACGGTGG+AGG + Chr1:73518658-73518677 MsG0180004110.01.T01:CDS 65.0%
CGTGGAGACGGTGGAGGAGT+CGG + Chr1:73518664-73518683 MsG0180004110.01.T01:CDS 65.0%
CTCCTCCACCGTCTCCACGA+CGG - Chr1:73518663-73518682 None:intergenic 65.0%
GGCGACCGTCTTGGAAGTGG+TGG + Chr1:73518598-73518617 MsG0180004110.01.T01:CDS 65.0%
GGCGGCAGTGGCTGTTGTGA+TGG + Chr1:73518700-73518719 MsG0180004110.01.T01:CDS 65.0%
GGTAACCGTCGTGGAGACGG+TGG + Chr1:73518655-73518674 MsG0180004110.01.T01:CDS 65.0%
!!! GGTTTTGGAGGTGGCGGCAG+TGG + Chr1:73518688-73518707 MsG0180004110.01.T01:CDS 65.0%
AGTCGCGGCGGTGGATGTCG+TGG + Chr1:73518547-73518566 MsG0180004110.01.T01:CDS 70.0%
GGAGACGGTGGAGGAGTCGG+AGG + Chr1:73518667-73518686 MsG0180004110.01.T01:CDS 70.0%
GGCGGCGACCGTCTTGGAAG+TGG + Chr1:73518595-73518614 MsG0180004110.01.T01:CDS 70.0%
GAGGCTCAGAGTCGCGGCGG+TGG + Chr1:73518538-73518557 MsG0180004110.01.T01:CDS 75.0%
GGCAGAGGCGGCGACCGTCT+TGG + Chr1:73518589-73518608 MsG0180004110.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 73513441 73518766 73513441 ID=MsG0180004110.01;Name=MsG0180004110.01
Chr1 mRNA 73513441 73518766 73513441 ID=MsG0180004110.01.T01;Parent=MsG0180004110.01;Name=MsG0180004110.01.T01;_AED=0.49;_eAED=0.76;_QI=88|0|0.33|1|0.5|0.66|3|0|144
Chr1 exon 73513441 73513547 73513441 ID=MsG0180004110.01.T01:exon:31315;Parent=MsG0180004110.01.T01
Chr1 exon 73513652 73513788 73513652 ID=MsG0180004110.01.T01:exon:31316;Parent=MsG0180004110.01.T01
Chr1 exon 73518488 73518766 73518488 ID=MsG0180004110.01.T01:exon:31317;Parent=MsG0180004110.01.T01
Chr1 five_prime_UTR 73513441 73513528 73513441 ID=MsG0180004110.01.T01:five_prime_utr;Parent=MsG0180004110.01.T01
Chr1 CDS 73513529 73513547 73513529 ID=MsG0180004110.01.T01:cds;Parent=MsG0180004110.01.T01
Chr1 CDS 73513652 73513788 73513652 ID=MsG0180004110.01.T01:cds;Parent=MsG0180004110.01.T01
Chr1 CDS 73518488 73518766 73518488 ID=MsG0180004110.01.T01:cds;Parent=MsG0180004110.01.T01
Gene Sequence

>MsG0180004110.01.T01

ATGTCTGATGAATGCAAAGCTAAGAGCTCATGGCCAGAGTTGGTTGGAGTGGAAGGAAAGGTAGCAGAAGCTACAATTCAGAGGGAGAATCCATTGGTGAATGCCATCATTGTGCTAGAAGGATCTTCTGTCACCGACGACTTACGCAACGACAGGGTTGATGATGGTGAAGAAATGAGAGAACAATGGGAAGAGGTTGAGGCTTTGAGGCTCAGAGTCGCGGCGGTGGATGTCGTGGAGTTAGTGGTGGATATGGTGGCAGAGGCGGCGACCGTCTTGGAAGTGGTGGTGGATATGGTGGAGGAGACATGGGTTATGGAGGTGGTAACCGTCGTGGAGACGGTGGAGGAGTCGGAGGTTTTGGAGGTGGCGGCAGTGGCTGTTGTGATGGAGGTGGATATGGTGGACGTTCATGAAAGAATAATCAGAAATTAA

Protein sequence

>MsG0180004110.01.T01

MSDECKAKSSWPELVGVEGKVAEATIQRENPLVNAIIVLEGSSVTDDLRNDRVDDGEEMREQWEEVEALRLRVAAVDVVELVVDMVAEAATVLEVVVDMVEETWVMEVVTVVETVEESEVLEVAAVAVVMEVDMVDVHERIIRN*