AlfalfaGEDB | MsG0880043897.01

M. sativa cultivar ZhongmuNo.1 / MsG0880043897.01

KEGG: -
GO: GO:0043531
PFAM: PF00931

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043897.01.T01	GAU28059.1	55	140	59	3	10	149	240	375	7.82E-37	142

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043897.01.T01	Q7XA42	41.429	140	80	2	14	153	236	373	7.07E-26	105

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043897.01.T01	A0A2Z6N8R9	55.000	140	59	3	10	149	240	375	3.74e-37	142

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047869.01	MsG0880043897.01	0.801297	9.625031e-49	4.580280e-46
MsG0080048463.01	MsG0880043897.01	0.800183	1.624277e-48	7.514132e-46
MsG0080048683.01	MsG0880043897.01	0.806371	8.498694e-50	4.604928e-47
MsG0080048856.01	MsG0880043897.01	0.805134	1.545439e-49	8.112842e-47
MsG0180000334.01	MsG0880043897.01	0.813154	2.954141e-51	1.914200e-48
MsG0180000335.01	MsG0880043897.01	0.812835	3.471706e-51	2.230380e-48
MsG0180000470.01	MsG0880043897.01	0.829776	4.259234e-55	4.403040e-52
MsG0180001063.01	MsG0880043897.01	0.816218	6.192193e-52	4.361570e-49
MsG0180004389.01	MsG0880043897.01	0.801236	9.904142e-49	4.705897e-46
MsG0180004765.01	MsG0880043897.01	0.801963	7.025233e-49	3.399780e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043897.01.T01	MTR_4g021690	55.000	140	60	3	10	149	240	376	1.67e-38	139
MsG0880043897.01.T01	MTR_4g022460	51.429	140	65	3	10	149	240	376	1.05e-35	130
MsG0880043897.01.T01	MTR_8g043600	49.286	140	70	1	18	157	207	345	3.78e-35	128
MsG0880043897.01.T01	MTR_4g022560	53.030	132	60	2	18	149	247	376	3.95e-33	123
MsG0880043897.01.T01	MTR_4g022960	50.714	140	66	3	10	149	240	376	4.44e-33	123
MsG0880043897.01.T01	MTR_8g038570	44.961	129	71	0	21	149	273	401	4.65e-30	114
MsG0880043897.01.T01	MTR_4g022540	51.852	135	63	2	15	149	244	376	2.10e-29	112
MsG0880043897.01.T01	MTR_6g452490	45.588	136	73	1	15	150	252	386	8.18e-29	111
MsG0880043897.01.T01	MTR_8g011550	42.069	145	82	2	7	150	246	389	1.39e-28	110
MsG0880043897.01.T01	MTR_4g022480	53.030	132	60	2	18	149	247	376	1.70e-28	110

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043897.01.T01	AT3G14460	34.783	138	85	3	16	149	253	389	1.57e-18	82.0
MsG0880043897.01.T01	AT3G50950	39.837	123	69	4	24	143	252	372	2.26e-18	81.3
MsG0880043897.01.T01	AT3G50950	39.837	123	69	4	24	143	252	372	2.26e-18	81.3
MsG0880043897.01.T01	AT3G07040	34.641	153	92	4	2	152	253	399	3.07e-18	80.9
MsG0880043897.01.T01	AT3G46530	36.364	121	73	3	29	149	267	383	7.47e-17	77.0
MsG0880043897.01.T01	AT3G14470	32.800	125	81	2	18	140	261	384	3.49e-16	75.1
MsG0880043897.01.T01	AT3G14470	32.800	125	81	2	18	140	261	384	3.49e-16	75.1
MsG0880043897.01.T01	AT5G43730	30.469	128	85	3	22	149	243	366	6.69e-12	62.8
MsG0880043897.01.T01	AT5G43730	30.469	128	85	3	22	149	243	366	6.69e-12	62.8
MsG0880043897.01.T01	AT5G43730	30.469	128	85	3	22	149	243	366	6.69e-12	62.8

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Find 31 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAATAATATTAGGC+TGG	0.516053	8:-32320575	MsG0880043897.01.T01:CDS
AAACTCAGTGAAAACATTGA+TGG	0.381698	8:-32320538	MsG0880043897.01.T01:CDS
AAACTTGGTGTCCATCGGCA+AGG	0.620777	8:-32320269	MsG0880043897.01.T01:CDS
AAAGAGATATTTACTTGTGT+TGG	0.455014	8:-32320515	MsG0880043897.01.T01:CDS
AAATAAACAAAACATTCTCC+AGG	0.562859	8:+32320324	None:intergenic
AACAACAAGAAGCAAGAAAG+TGG	0.532400	8:-32320407	MsG0880043897.01.T01:CDS
AATCAAAACTTGGTGTCCAT+CGG	0.567333	8:-32320274	MsG0880043897.01.T01:CDS
AATTTGACGAAACGTTTGAA+GGG	0.568176	8:-32320457	MsG0880043897.01.T01:CDS
ACCAATACGGTAAATGGAGA+GGG	0.557017	8:+32320219	None:intergenic
ACCTAAATGAAGAACATTCC+TGG	0.382737	8:-32320342	MsG0880043897.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTCAGTGAAAACATTGA+TGG	-	Chr8:32320225-32320244	MsG0880043897.01.T01:CDS	30.0%
AATTTGACGAAACGTTTGAA+GGG	-	Chr8:32320306-32320325	MsG0880043897.01.T01:CDS	30.0%
CGAATGAGAGTTATTTATCT+TGG	-	Chr8:32320280-32320299	MsG0880043897.01.T01:CDS	30.0%
TAATTTGACGAAACGTTTGA+AGG	-	Chr8:32320305-32320324	MsG0880043897.01.T01:CDS	30.0%
TATACATTAAGCGACCAATA+CGG	+	Chr8:32320560-32320579	None:intergenic	30.0%
AACAACAAGAAGCAAGAAAG+TGG	-	Chr8:32320356-32320375	MsG0880043897.01.T01:CDS	35.0%
ACCTAAATGAAGAACATTCC+TGG	-	Chr8:32320421-32320440	MsG0880043897.01.T01:CDS	35.0%
AGAACTCGAGAATCAAAACT+TGG	-	Chr8:32320479-32320498	MsG0880043897.01.T01:CDS	35.0%
AGATCGTGCAAAAATGTAAC+GGG	-	Chr8:32320517-32320536	MsG0880043897.01.T01:CDS	35.0%
GAGATCGTGCAAAAATGTAA+CGG	-	Chr8:32320516-32320535	MsG0880043897.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	32320156	32320629	32320156	ID=MsG0880043897.01;Name=MsG0880043897.01
Chr8	mRNA	32320156	32320629	32320156	ID=MsG0880043897.01.T01;Parent=MsG0880043897.01;Name=MsG0880043897.01.T01;_AED=0.43;_eAED=0.43;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|157
Chr8	exon	32320156	32320629	32320156	ID=MsG0880043897.01.T01:exon:7841;Parent=MsG0880043897.01.T01
Chr8	CDS	32320156	32320629	32320156	ID=MsG0880043897.01.T01:cds;Parent=MsG0880043897.01.T01

Gene Sequence

>MsG0880043897.01.T01

ATGGATACTAATATTGTGTTGGAACATGAGTCAAAAGGAAATAATATTAGGCTGGAAGACGTATCCTCAAAACTCAGTGAAAACATTGATGGAAAGAGATATTTACTTGTGTTGGATGATGTGTCGAATGAGAGTTATTTATCTTGGTCTAATTTGACGAAACGTTTGAAGGGTGCGGCAAAAGGAAGTAAAATCATAATAACAACAAGAAGCAAGAAAGTGGCAAAGATATCGAAAAACCGGTCTCAGCTCATAACTTTGGAGAACCTAAATGAAGAACATTCCTGGAGAATGTTTTGTTTATTTGCTTTTAATGATGAAACAGAACTCGAGAATCAAAACTTGGTGTCCATCGGCAAGGAGATCGTGCAAAAATGTAACGGGATACCCCTCTCCATTTACCGTATTGGTCGCTTAATGTATACTAAGAAGATGGAGAAGGATTGGTTAAAGTTAAGGATCAAGATCTTGTAA

Protein sequence

>MsG0880043897.01.T01

MDTNIVLEHESKGNNIRLEDVSSKLSENIDGKRYLLVLDDVSNESYLSWSNLTKRLKGAAKGSKIIITTRSKKVAKISKNRSQLITLENLNEEHSWRMFCLFAFNDETELENQNLVSIGKEIVQKCNGIPLSIYRIGRLMYTKKMEKDWLKLRIKIL*