AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004389.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004389.01.T01 MTR_1g078210 82.677 254 2 2 179 390 253 506 6.23e-141 411
MsG0180004389.01.T01 MTR_1g078210 83.871 186 24 3 1 181 1 185 1.00e-92 287
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004389.01.T01 AT5G16260 58.984 256 66 2 173 389 262 517 4.86e-95 294
MsG0180004389.01.T01 AT5G16260 50.568 176 61 6 13 164 11 184 7.26e-43 157

Find 128 sgRNAs with CRISPR-Local

Find 490 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGACTACCATACCTTATT+TGG 0.067713 1:-77341971 MsG0180004389.01.T01:three_prime_UTR
TGTCTTCAATTTCTGAATTA+TGG 0.084752 1:-77348022 MsG0180004389.01.T01:CDS
TGACAGTTGGTTTGAATTAA+AGG 0.162229 1:-77345744 MsG0180004389.01.T01:intron
ATTTCAGAGCATTTCTTAAA+TGG 0.211617 1:-77348101 MsG0180004389.01.T01:intron
GTCTTCAATTTCTGAATTAT+GGG 0.244458 1:-77348021 MsG0180004389.01.T01:CDS
TTTCAAGGCCTGGACTTATT+AGG 0.251138 1:+77342133 None:intergenic
ATAAGTGGGATAAGAGTCTT+AGG 0.253904 1:-77347401 MsG0180004389.01.T01:CDS
GGCTCTAGCAATCCAACTTT+TGG 0.263833 1:-77344625 MsG0180004389.01.T01:CDS
TACCACTGGGCTACACCTTC+AGG 0.281607 1:+77347055 None:intergenic
TGTATCATTGGAAAAGAAAA+AGG 0.296817 1:-77342021 MsG0180004389.01.T01:three_prime_UTR
AAAACGATGAATTCTGAAAA+TGG 0.309280 1:-77348402 MsG0180004389.01.T01:exon
CGTAGTAATCCATGAGCTTC+GGG 0.311556 1:+77342098 None:intergenic
TATTAGTTCTCTTGTATCAT+TGG 0.313605 1:-77342033 MsG0180004389.01.T01:three_prime_UTR
TCATCCTCAGGGTGTTGTTT+TGG 0.326001 1:-77342842 MsG0180004389.01.T01:CDS
AAAATGGCAAAAGGAGATTA+AGG 0.329467 1:-77347544 MsG0180004389.01.T01:CDS
CTTATTAGGAACTGTGAATC+TGG 0.330266 1:+77342147 None:intergenic
ACCTGCAGTTGAAGACGAAT+TGG 0.334870 1:+77347977 None:intergenic
GATGTTGGATGGTACGTTCT+TGG 0.346116 1:-77348255 MsG0180004389.01.T01:CDS
TGTGTATAATACTCATGATT+TGG 0.374437 1:+77341919 None:intergenic
TTCGGTGGTGGTGGTGTAGT+AGG 0.376500 1:-77347492 MsG0180004389.01.T01:CDS
AATACACATGTTTATGTCAC+TGG 0.389054 1:-77345719 MsG0180004389.01.T01:CDS
GGGGTTCTTGCAATATTTCA+AGG 0.390159 1:+77342118 None:intergenic
CAAGTGGAAGCTTCGGAATT+CGG 0.395495 1:-77347510 MsG0180004389.01.T01:CDS
CTTTCTGCTGAAATTTAGCC+AGG 0.400350 1:+77344556 None:intergenic
GGCATATAAGCGGGTTCCTC+AGG 0.404098 1:-77347379 MsG0180004389.01.T01:intron
AACTTGAAGGTGAATGAGTT+AGG 0.421155 1:-77342184 MsG0180004389.01.T01:exon
TCACCATCAGGCGGTGTTGA+AGG 0.424907 1:+77347453 None:intergenic
GCTAAGCGATTGGAGCAGTT+TGG 0.425973 1:-77342212 MsG0180004389.01.T01:CDS
ACGTAGTAATCCATGAGCTT+CGG 0.430518 1:+77342097 None:intergenic
ACTAGAAGAAGATGTTAAAG+AGG 0.441572 1:-77343109 MsG0180004389.01.T01:CDS
GTAAATTCTTCTTCACCATC+AGG 0.442135 1:+77347441 None:intergenic
GTTAAATTCAAGGACAGAAA+AGG 0.445666 1:-77342820 MsG0180004389.01.T01:CDS
TAATTAACCATGCCACAGTC+CGG 0.453104 1:-77342250 MsG0180004389.01.T01:CDS
ATTTGGAAAATTGCGACATT+CGG 0.457076 1:-77341954 MsG0180004389.01.T01:three_prime_UTR
ATCTTATCACCAGGCCGAAA+AGG 0.458485 1:+77344594 None:intergenic
GAAGACGAATTGGGTCTTTG+AGG 0.461752 1:+77347987 None:intergenic
AAGACGAATTGGGTCTTTGA+GGG 0.462016 1:+77347988 None:intergenic
AATTAAACCATCGTCTTCAC+TGG 0.462591 1:+77342268 None:intergenic
ACTACCTTGACTGCATCTAT+AGG 0.470187 1:+77343069 None:intergenic
TAGCGAAGGACAACAGTTGT+TGG 0.472530 1:+77343509 None:intergenic
TGAGGCGCAAGTGGAAGCTT+CGG 0.475916 1:-77347517 MsG0180004389.01.T01:CDS
CACAATCAACCGCAACCTAC+TGG 0.481272 1:-77348369 MsG0180004389.01.T01:intron
AAAGAGGAATGCACGAAGCT+TGG 0.484045 1:-77343093 MsG0180004389.01.T01:CDS
CAGTAGGTTGCGGTTGATTG+TGG 0.484700 1:+77348370 None:intergenic
CCCAATTCGTCTTCAACTGC+AGG 0.485119 1:-77347978 MsG0180004389.01.T01:intron
CTCTATGTTGATAAAGAGAC+AGG 0.489825 1:-77344776 MsG0180004389.01.T01:CDS
GGTATGTGATAATCATCCTC+AGG 0.490183 1:-77342854 MsG0180004389.01.T01:CDS
AAGGCGCACCATCCAAAAGT+TGG 0.491090 1:+77344613 None:intergenic
CCATGGAACATTAACGCCAT+TGG 0.492816 1:-77341737 MsG0180004389.01.T01:three_prime_UTR
ACCACTGGGCTACACCTTCA+GGG 0.492942 1:+77347056 None:intergenic
CCTGCAGTTGAAGACGAATT+GGG 0.493187 1:+77347978 None:intergenic
GATTCCGATGTCTGTCTCCC+TGG 0.495254 1:-77344574 MsG0180004389.01.T01:CDS
TCTTGCAATATTTCAAGGCC+TGG 0.496929 1:+77342123 None:intergenic
GCTTCGGAATTCGGTGGTGG+TGG 0.497213 1:-77347501 MsG0180004389.01.T01:CDS
AATTTAATTAGTAGTCGAAT+GGG 0.502642 1:-77341864 MsG0180004389.01.T01:three_prime_UTR
TATACTGTTGCATTAGATGA+TGG 0.506959 1:-77341822 MsG0180004389.01.T01:three_prime_UTR
GAATGCTAATCTCACATCAC+AGG 0.509001 1:+77341703 None:intergenic
AATTAACCATGCCACAGTCC+GGG 0.512168 1:-77342249 MsG0180004389.01.T01:CDS
TAAGGAGGCTGAGGCGCAAG+TGG 0.518541 1:-77347526 MsG0180004389.01.T01:CDS
TGCAAGAACCCCGAAGCTCA+TGG 0.518989 1:-77342107 MsG0180004389.01.T01:three_prime_UTR
GAATTTAATTAGTAGTCGAA+TGG 0.519758 1:-77341865 MsG0180004389.01.T01:three_prime_UTR
GAAGAATTTACTGATGATGA+TGG 0.523794 1:-77347429 MsG0180004389.01.T01:CDS
CAAGGACAGAAAAGGTGCTC+AGG 0.526794 1:-77342812 MsG0180004389.01.T01:CDS
CAGTTTGGTGAGGAACTTGA+AGG 0.531731 1:-77342197 MsG0180004389.01.T01:CDS
GGTGAAAATGTCGCAGATGT+TGG 0.532231 1:-77348270 MsG0180004389.01.T01:CDS
ATATCAACCCTCATTTCAGC+AGG 0.537601 1:+77343476 None:intergenic
TCATCAATAGTAACATCCTC+AGG 0.539668 1:+77345692 None:intergenic
TGTTCAGTCCTGCTGAAATG+AGG 0.543568 1:-77343484 MsG0180004389.01.T01:CDS
AGAGGAAGATGCTAAGCGAT+TGG 0.545342 1:-77342222 MsG0180004389.01.T01:CDS
CTGGCTAAATTTCAGCAGAA+AGG 0.546970 1:-77344555 MsG0180004389.01.T01:intron
TGTACCTCAGAGAAGACATA+AGG 0.556409 1:+77348210 None:intergenic
TAGCATCTTCCTCTAGATCC+CGG 0.556991 1:+77342231 None:intergenic
GAAGCTTCGGAATTCGGTGG+TGG 0.562716 1:-77347504 MsG0180004389.01.T01:CDS
TATGTCTTCTCTGAGGTACA+AGG 0.569406 1:-77348207 MsG0180004389.01.T01:intron
GAGTCTTAGGGCATATAAGC+GGG 0.570694 1:-77347388 MsG0180004389.01.T01:CDS
CCAATGGCGTTAATGTTCCA+TGG 0.573495 1:+77341737 None:intergenic
AAGAATTTACTGATGATGAT+GGG 0.578013 1:-77347428 MsG0180004389.01.T01:CDS
ATGATGATGGGACATATAAG+TGG 0.580341 1:-77347416 MsG0180004389.01.T01:CDS
CTAGATCCCGGACTGTGGCA+TGG 0.581437 1:+77342243 None:intergenic
TAGAATTGATGAATGGAAGA+TGG 0.583366 1:-77342783 MsG0180004389.01.T01:intron
TAGCGTGTACCAGTAGGTTG+CGG 0.584652 1:+77348360 None:intergenic
TCACAGTTCCTAATAAGTCC+AGG 0.585329 1:-77342141 MsG0180004389.01.T01:three_prime_UTR
AAAGGAGATTAAGGAGGCTG+AGG 0.585827 1:-77347535 MsG0180004389.01.T01:CDS
TGCATTGGTTACATATCTCA+AGG 0.589361 1:-77344738 MsG0180004389.01.T01:intron
ATACACATGTTTATGTCACT+GGG 0.589425 1:-77345718 MsG0180004389.01.T01:CDS
GCGTGCATAGAATTGATGAA+TGG 0.595667 1:-77342790 MsG0180004389.01.T01:CDS
GCGATTGGAGCAGTTTGGTG+AGG 0.606680 1:-77342207 MsG0180004389.01.T01:CDS
GGAGAGAATCAACAACAACT+TGG 0.615030 1:-77348234 MsG0180004389.01.T01:CDS
GACATCGGAATCTTATCACC+AGG 0.616948 1:+77344585 None:intergenic
AATTCAGAAATTGAAGACAA+AGG 0.617573 1:+77348026 None:intergenic
TGGATTGCTAGAGCCACTGA+TGG 0.618240 1:+77344633 None:intergenic
AGACCTTCAACACCGCCTGA+TGG 0.618261 1:-77347456 MsG0180004389.01.T01:CDS
TTATGCTGAGGCTGAAGATG+TGG 0.619425 1:-77347577 MsG0180004389.01.T01:CDS
TGGACCTATAGATGCAGTCA+AGG 0.623091 1:-77343073 MsG0180004389.01.T01:intron
TTGTTATGTAGTTTATGCTG+AGG 0.623808 1:-77347589 MsG0180004389.01.T01:intron
TTCCTCTAGATCCCGGACTG+TGG 0.624191 1:+77342238 None:intergenic
TGCCACAGTCCGGGATCTAG+AGG 0.625882 1:-77342240 MsG0180004389.01.T01:CDS
ATCAACATAGAGCTTAACAC+GGG 0.630935 1:+77344787 None:intergenic
TATTCGCTACAGTGGCAGCA+AGG 0.632781 1:+77348447 None:intergenic
TTATGTCACTGGGTTGCCTG+AGG 0.633023 1:-77345708 MsG0180004389.01.T01:CDS
GTTCAGTCCTGCTGAAATGA+GGG 0.634321 1:-77343483 MsG0180004389.01.T01:intron
AGAGTCTTAGGGCATATAAG+CGG 0.635019 1:-77347389 MsG0180004389.01.T01:CDS
TCGTCGTCTCTAGAAACCAC+GGG 0.636897 1:-77348495 MsG0180004389.01.T01:five_prime_UTR
TGGTCCTTATGTCTTCTCTG+AGG 0.638134 1:-77348214 MsG0180004389.01.T01:CDS
TGTATATCAGGAACCATCAG+TGG 0.638535 1:-77344646 MsG0180004389.01.T01:intron
ACAGGGTCAATCAACACCAA+TGG 0.642531 1:+77341721 None:intergenic
AAAATGTCGCAGATGTTGGA+TGG 0.645277 1:-77348266 MsG0180004389.01.T01:CDS
TAAGTGGGATAAGAGTCTTA+GGG 0.645357 1:-77347400 MsG0180004389.01.T01:CDS
TTTCTGCTGAAATTTAGCCA+GGG 0.652648 1:+77344557 None:intergenic
AGGTCACATAGGATCCCTGA+AGG 0.657721 1:-77347070 MsG0180004389.01.T01:CDS
CAGGACTGAACATATAGCGA+AGG 0.659719 1:+77343495 None:intergenic
GTATGTGATAATCATCCTCA+GGG 0.661661 1:-77342853 MsG0180004389.01.T01:CDS
GTCGTCGTCTCTAGAAACCA+CGG 0.668195 1:-77348496 MsG0180004389.01.T01:five_prime_UTR
AATGCTAATCTCACATCACA+GGG 0.669904 1:+77341704 None:intergenic
TGGGTTTCTATTCGCTACAG+TGG 0.670571 1:+77348439 None:intergenic
GGTCTGAAGGAAGAACTGAA+TGG 0.672653 1:-77348052 MsG0180004389.01.T01:CDS
GTGGAAGCTTCGGAATTCGG+TGG 0.675726 1:-77347507 MsG0180004389.01.T01:CDS
TTAGCCAGGGAGACAGACAT+CGG 0.680304 1:+77344570 None:intergenic
ATGGCAAAAGGAGATTAAGG+AGG 0.680476 1:-77347541 MsG0180004389.01.T01:CDS
AATTCTTCTTCACCATCAGG+CGG 0.682237 1:+77347444 None:intergenic
TCCCTGAAGGTGTAGCCCAG+TGG 0.686795 1:-77347057 MsG0180004389.01.T01:intron
TATCAACATAGAGCTTAACA+CGG 0.691544 1:+77344786 None:intergenic
TGATGATGGGACATATAAGT+GGG 0.715635 1:-77347415 MsG0180004389.01.T01:CDS
ATGCAATGAAAGAGTGCCCG+TGG 0.722032 1:+77348479 None:intergenic
TTAACCAAAACAACACCCTG+AGG 0.735800 1:+77342838 None:intergenic
GTAGTAATCCATGAGCTTCG+GGG 0.736991 1:+77342099 None:intergenic
ATACATGCCAGTGAAGACGA+TGG 0.748904 1:-77342275 MsG0180004389.01.T01:CDS
TCAACATAGAGCTTAACACG+GGG 0.786913 1:+77344788 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAGTTCATTAT+AGG - Chr1:77345232-77345251 MsG0180004389.01.T01:intron 10.0%
!! AAATCTATATTAAATGAAAA+AGG + Chr1:77345951-77345970 None:intergenic 10.0%
!! AATCTATATTAAATGAAAAA+GGG + Chr1:77345950-77345969 None:intergenic 10.0%
!! TAAAATTAATACTTTATGTT+TGG - Chr1:77343256-77343275 MsG0180004389.01.T01:intron 10.0%
!!! ATATATTTTTTATGAGATTT+GGG - Chr1:77344888-77344907 MsG0180004389.01.T01:intron 10.0%
!!! TACTTTTCTTTTTTAAATTA+CGG + Chr1:77343729-77343748 None:intergenic 10.0%
!!! TTTAAAATTTATTTGCTTTT+GGG - Chr1:77342514-77342533 MsG0180004389.01.T01:intron 10.0%
!!! TTTTAAAATTTATTTGCTTT+TGG - Chr1:77342513-77342532 MsG0180004389.01.T01:intron 10.0%
!!! TTTTTTCTATTTTTTCTTTT+GGG - Chr1:77343988-77344007 MsG0180004389.01.T01:intron 10.0%
!! ATCTATATTAAATGAAAAAG+GGG + Chr1:77345949-77345968 None:intergenic 15.0%
!! ATTATATATTTGTGTATATC+AGG - Chr1:77345512-77345531 MsG0180004389.01.T01:intron 15.0%
!! CAAATCTCATAAAAAATATA+TGG + Chr1:77344889-77344908 None:intergenic 15.0%
!! GATATACACAAATATATAAT+TGG + Chr1:77345512-77345531 None:intergenic 15.0%
!! GTATCTGTTATATTTAATTA+AGG - Chr1:77344712-77344731 MsG0180004389.01.T01:intron 15.0%
!! TATTATGATTAACATAAGAT+AGG - Chr1:77342879-77342898 MsG0180004389.01.T01:intron 15.0%
!!! AAATATAACAGATACTTTTA+AGG + Chr1:77344707-77344726 None:intergenic 15.0%
!!! CATATATTTTTTATGAGATT+TGG - Chr1:77344887-77344906 MsG0180004389.01.T01:intron 15.0%
!!! CTTTTTCTTTTTTATTTATC+AGG - Chr1:77347857-77347876 MsG0180004389.01.T01:intron 15.0%
!!! GTTCATCTTATTTATATAAA+TGG - Chr1:77344286-77344305 MsG0180004389.01.T01:intron 15.0%
!!! GTTTTTTCTATTTTTTCTTT+TGG - Chr1:77343987-77344006 MsG0180004389.01.T01:intron 15.0%
!!! TCAATTACATTAATCTTTTA+AGG + Chr1:77347139-77347158 None:intergenic 15.0%
!!! TGATAATATGCAATATATTT+TGG + Chr1:77344803-77344822 None:intergenic 15.0%
!!! TTACTTTTAACAATTATAGT+AGG - Chr1:77346905-77346924 MsG0180004389.01.T01:intron 15.0%
!!! TTTGTTATTATTATTTACTG+TGG - Chr1:77342540-77342559 MsG0180004389.01.T01:intron 15.0%
!! AAAAAAAAGTTCATTATAGG+TGG - Chr1:77345235-77345254 MsG0180004389.01.T01:intron 20.0%
!! AAAATCAAACTATAATGCTT+AGG - Chr1:77344652-77344671 MsG0180004389.01.T01:intron 20.0%
!! AAAATCAACTTGAATAAAGT+TGG + Chr1:77345881-77345900 None:intergenic 20.0%
!! AAAGATGAGAAAAAATAAGT+GGG + Chr1:77344318-77344337 None:intergenic 20.0%
!! AATTTAATTAGTAGTCGAAT+GGG - Chr1:77348306-77348325 MsG0180004389.01.T01:intron 20.0%
!! ACAAAAAAAATCCTGAAAAT+AGG + Chr1:77347190-77347209 None:intergenic 20.0%
!! AGATGCAAAAATTGATATAA+AGG + Chr1:77346215-77346234 None:intergenic 20.0%
!! AGATTCATATTTCATAAGTT+AGG - Chr1:77346281-77346300 MsG0180004389.01.T01:intron 20.0%
!! ATGACAAAAGTTAATATTCT+CGG + Chr1:77347836-77347855 None:intergenic 20.0%
!! GAAAAGAAAAAGGAAATTAT+AGG - Chr1:77348159-77348178 MsG0180004389.01.T01:intron 20.0%
!! GTTTCAATAAATAAAACCTA+GGG + Chr1:77343929-77343948 None:intergenic 20.0%
!! TAATGAAATTGTTATGTGAT+AGG - Chr1:77344017-77344036 MsG0180004389.01.T01:intron 20.0%
!! TATAATGCTTAGGTATATAT+CGG - Chr1:77344662-77344681 MsG0180004389.01.T01:intron 20.0%
!! TGGTTATAAAATTGATAGAA+AGG + Chr1:77343824-77343843 None:intergenic 20.0%
!! TTAATTAAGGAAAATACAGT+CGG - Chr1:77344725-77344744 MsG0180004389.01.T01:intron 20.0%
!!! AAAAGTTAAGCTTTAATTCA+TGG + Chr1:77342470-77342489 None:intergenic 20.0%
!!! AGTGTTTTTATAATTGTACT+TGG - Chr1:77345671-77345690 MsG0180004389.01.T01:intron 20.0%
!!! ATAAAAGTGTATTTTCTGAT+AGG + Chr1:77342098-77342117 None:intergenic 20.0%
!!! TATCAGAAAATACACTTTTA+TGG - Chr1:77342097-77342116 MsG0180004389.01.T01:three_prime_UTR 20.0%
!!! TATGTTTAGTTTAGAGTTTT+TGG - Chr1:77346517-77346536 MsG0180004389.01.T01:intron 20.0%
!!! TATTTTAATAGTACCTAAAC+TGG + Chr1:77347572-77347591 None:intergenic 20.0%
!!! TCTTTTTTATTTATCAGGTT+TGG - Chr1:77347862-77347881 MsG0180004389.01.T01:intron 20.0%
!!! TTGATTTTACAATTCAACAA+AGG + Chr1:77344640-77344659 None:intergenic 20.0%
!!! TTTAATTTCAACATAACACA+AGG + Chr1:77342022-77342041 None:intergenic 20.0%
!!! TTTATTCAAGTTGATTTTTC+AGG - Chr1:77345883-77345902 MsG0180004389.01.T01:intron 20.0%
!!! TTTTATAACCAAAACTTTGA+TGG - Chr1:77343833-77343852 MsG0180004389.01.T01:intron 20.0%
! AAAATCCTGAAAATAGGATA+TGG + Chr1:77347184-77347203 None:intergenic 25.0%
! AAAGTATATTGCCAAAAGTA+TGG - Chr1:77344754-77344773 MsG0180004389.01.T01:CDS 25.0%
! AACTAAACATAAATCTGAGA+TGG + Chr1:77346508-77346527 None:intergenic 25.0%
! AAGAAAAAGGAAATTATAGG+AGG - Chr1:77348162-77348181 MsG0180004389.01.T01:intron 25.0%
! AAGATGAGAAAAAATAAGTG+GGG + Chr1:77344317-77344336 None:intergenic 25.0%
! AATTCAGAAATTGAAGACAA+AGG + Chr1:77342147-77342166 None:intergenic 25.0%
! ACAATTCAACAAAGGAATAT+AGG + Chr1:77344632-77344651 None:intergenic 25.0%
! ACACCCTAAAAAAATTGTTT+CGG + Chr1:77343542-77343561 None:intergenic 25.0%
! ACATTTCCATAAATACTGAT+AGG - Chr1:77346127-77346146 MsG0180004389.01.T01:intron 25.0%
! ACCAATGTATTCAATAAATC+AGG + Chr1:77343045-77343064 None:intergenic 25.0%
! ACCTGATTTATTGAATACAT+TGG - Chr1:77343041-77343060 MsG0180004389.01.T01:intron 25.0%
! AGGCTAAATTAAGATGAATT+GGG + Chr1:77345922-77345941 None:intergenic 25.0%
! ATAATGACTAAAACAAGATC+TGG + Chr1:77347545-77347564 None:intergenic 25.0%
! ATCTAACAGATATGATTGAT+TGG - Chr1:77342424-77342443 MsG0180004389.01.T01:intron 25.0%
! ATTATTATTTACTGTGGACT+TGG - Chr1:77342546-77342565 MsG0180004389.01.T01:intron 25.0%
! ATTCATTGGAAAAACTAACA+TGG - Chr1:77344544-77344563 MsG0180004389.01.T01:intron 25.0%
! CAAAGATGAGAAAAAATAAG+TGG + Chr1:77344319-77344338 None:intergenic 25.0%
! CAAAGGAATATAGGATAAAA+AGG + Chr1:77344623-77344642 None:intergenic 25.0%
! CAATGAATATAAGTAGTTTC+AGG + Chr1:77344532-77344551 None:intergenic 25.0%
! CTGAAACTACTTATATTCAT+TGG - Chr1:77344530-77344549 MsG0180004389.01.T01:intron 25.0%
! GAATTTAATTAGTAGTCGAA+TGG - Chr1:77348305-77348324 MsG0180004389.01.T01:intron 25.0%
! GCATAATAGTTAAAACTCTA+AGG + Chr1:77342965-77342984 None:intergenic 25.0%
! GGTTTCAATAAATAAAACCT+AGG + Chr1:77343930-77343949 None:intergenic 25.0%
! GTCTTCAATTTCTGAATTAT+GGG - Chr1:77342149-77342168 MsG0180004389.01.T01:three_prime_UTR 25.0%
! TAAATAAGATGAACAGATAG+CGG + Chr1:77344280-77344299 None:intergenic 25.0%
! TAATATTGCTTAATCTGTTC+AGG - Chr1:77347016-77347035 MsG0180004389.01.T01:intron 25.0%
! TACTTATGAAAAGATAGATG+AGG + Chr1:77346256-77346275 None:intergenic 25.0%
! TAGGCTAAATTAAGATGAAT+TGG + Chr1:77345923-77345942 None:intergenic 25.0%
! TATAACCAAATCCAAAATGA+TGG + Chr1:77346792-77346811 None:intergenic 25.0%
! TATAATACACCAAAAATGGT+GGG + Chr1:77345082-77345101 None:intergenic 25.0%
! TGACAAAAGTTAATATTCTC+GGG + Chr1:77347835-77347854 None:intergenic 25.0%
! TGTATCATTGGAAAAGAAAA+AGG - Chr1:77348149-77348168 MsG0180004389.01.T01:intron 25.0%
! TGTCTTCAATTTCTGAATTA+TGG - Chr1:77342148-77342167 MsG0180004389.01.T01:three_prime_UTR 25.0%
! TGTGTATAATACTCATGATT+TGG + Chr1:77348254-77348273 None:intergenic 25.0%
! TTAAATGAAAAAGGGGAATT+AGG + Chr1:77345942-77345961 None:intergenic 25.0%
! TTCATTGGAAAAACTAACAT+GGG - Chr1:77344545-77344564 MsG0180004389.01.T01:intron 25.0%
! TTGGAAAAATATCTACAAGA+AGG + Chr1:77345975-77345994 None:intergenic 25.0%
!! AAAACGATGAATTCTGAAAA+TGG - Chr1:77341768-77341787 MsG0180004389.01.T01:three_prime_UTR 25.0%
!! AAACAAACATTTTTCCTTGT+GGG - Chr1:77347675-77347694 MsG0180004389.01.T01:intron 25.0%
!! AAGAATTTACTGATGATGAT+GGG - Chr1:77342742-77342761 MsG0180004389.01.T01:intron 25.0%
!! ACTATCTTCAACAATTTTTG+AGG + Chr1:77344139-77344158 None:intergenic 25.0%
!! AGAATGTTAATCCATACTTT+TGG + Chr1:77344768-77344787 None:intergenic 25.0%
!! ATTTCAGAGCATTTCTTAAA+TGG - Chr1:77342069-77342088 MsG0180004389.01.T01:three_prime_UTR 25.0%
!! CTAATGTGATTTTCATTGTA+TGG - Chr1:77346604-77346623 MsG0180004389.01.T01:intron 25.0%
!! TATTAGTTCTCTTGTATCAT+TGG - Chr1:77348137-77348156 MsG0180004389.01.T01:intron 25.0%
!! TATTTTTCCAATTTACCAGA+TGG - Chr1:77345984-77346003 MsG0180004389.01.T01:intron 25.0%
!! TCTTTTCCTATCAGTATTTA+TGG + Chr1:77346136-77346155 None:intergenic 25.0%
!!! AACTAAACTATGATTTTGAC+AGG + Chr1:77345711-77345730 None:intergenic 25.0%
!!! AAGTCCGAAACAATTTTTTT+AGG - Chr1:77343535-77343554 MsG0180004389.01.T01:CDS 25.0%
!!! AATAGTAACGTAACTTGTTT+TGG - Chr1:77347588-77347607 MsG0180004389.01.T01:intron 25.0%
!!! AGATTTTTTGAGAAAGAGTT+TGG + Chr1:77343481-77343500 None:intergenic 25.0%
!!! AGTCCGAAACAATTTTTTTA+GGG - Chr1:77343536-77343555 MsG0180004389.01.T01:CDS 25.0%
!!! AGTTACTAGTTAGTTTGTTA+CGG + Chr1:77343219-77343238 None:intergenic 25.0%
!!! ATCACATGAAAGCATTTAAA+AGG + Chr1:77344833-77344852 None:intergenic 25.0%
!!! GGTTTTATTTATTGAAACCA+AGG - Chr1:77343931-77343950 MsG0180004389.01.T01:intron 25.0%
!!! TATATCGGTTTTTCATGTTT+AGG - Chr1:77344677-77344696 MsG0180004389.01.T01:intron 25.0%
!!! TCTTGTTTTAGATTTTGCAT+AGG - Chr1:77343080-77343099 MsG0180004389.01.T01:CDS 25.0%
!!! TGTTGTTTTGGTTAAATTCA+AGG - Chr1:77347340-77347359 MsG0180004389.01.T01:intron 25.0%
!!! TTAACTAAATTTTGATGCCT+AGG - Chr1:77342910-77342929 MsG0180004389.01.T01:intron 25.0%
!!! TTTAGAGTTTTTGGATGATT+TGG - Chr1:77346526-77346545 MsG0180004389.01.T01:intron 25.0%
!!! TTTTTATTTATCAGGTTTGG+TGG - Chr1:77347865-77347884 MsG0180004389.01.T01:intron 25.0%
AAAATGGCAAAAGGAGATTA+AGG - Chr1:77342626-77342645 MsG0180004389.01.T01:intron 30.0%
AAAGAGACAGGAAGAAAAAA+GGG - Chr1:77345406-77345425 MsG0180004389.01.T01:intron 30.0%
AACTTCCTCTTCTTTCAAAA+AGG + Chr1:77344091-77344110 None:intergenic 30.0%
AAGAAGAAAACGGATAAACA+AGG + Chr1:77347422-77347441 None:intergenic 30.0%
AATACACATGTTTATGTCAC+TGG - Chr1:77344451-77344470 MsG0180004389.01.T01:intron 30.0%
AATTTACCAGATGGTGTAAA+TGG - Chr1:77345993-77346012 MsG0180004389.01.T01:intron 30.0%
ACTAGAAGAAGATGTTAAAG+AGG - Chr1:77347061-77347080 MsG0180004389.01.T01:CDS 30.0%
AGAAAGGAAATATTCCCATA+TGG + Chr1:77343808-77343827 None:intergenic 30.0%
AGTCATTATTCAACCAGTTT+AGG - Chr1:77347556-77347575 MsG0180004389.01.T01:CDS 30.0%
AGTTAAAACAGAAATTGCTG+CGG + Chr1:77341866-77341885 None:intergenic 30.0%
ATACACATGTTTATGTCACT+GGG - Chr1:77344452-77344471 MsG0180004389.01.T01:intron 30.0%
ATGGAAATGTTTATCGAAAC+TGG + Chr1:77346117-77346136 None:intergenic 30.0%
ATTTACACCATCTGGTAAAT+TGG + Chr1:77345994-77346013 None:intergenic 30.0%
ATTTGGAAAATTGCGACATT+CGG - Chr1:77348216-77348235 MsG0180004389.01.T01:CDS 30.0%
CCAAGTATGGAATTATAAAG+AGG - Chr1:77344595-77344614 MsG0180004389.01.T01:CDS 30.0%
CCTCTTTATAATTCCATACT+TGG + Chr1:77344598-77344617 None:intergenic 30.0%
GAAAGTAGTATCACTGTTAT+TGG + Chr1:77347227-77347246 None:intergenic 30.0%
GACCGAAAATAAATAACACA+AGG - Chr1:77344952-77344971 MsG0180004389.01.T01:intron 30.0%
GCTCAAAGCTAATTCAAATT+TGG - Chr1:77346340-77346359 MsG0180004389.01.T01:intron 30.0%
GGAAAAGAAAACGAAAAAGT+TGG - Chr1:77345821-77345840 MsG0180004389.01.T01:intron 30.0%
GGCTAAATTAAGATGAATTG+GGG + Chr1:77345921-77345940 None:intergenic 30.0%
GTATAATACACCAAAAATGG+TGG + Chr1:77345083-77345102 None:intergenic 30.0%
GTATTAATCTCAATTTCCCT+AGG - Chr1:77343910-77343929 MsG0180004389.01.T01:intron 30.0%
GTTAAATTCAAGGACAGAAA+AGG - Chr1:77347350-77347369 MsG0180004389.01.T01:intron 30.0%
TAAAGAGACAGGAAGAAAAA+AGG - Chr1:77345405-77345424 MsG0180004389.01.T01:intron 30.0%
TAGAATTGATGAATGGAAGA+TGG - Chr1:77347387-77347406 MsG0180004389.01.T01:CDS 30.0%
TATACTGTTGCATTAGATGA+TGG - Chr1:77348348-77348367 MsG0180004389.01.T01:intron 30.0%
TATCAACATAGAGCTTAACA+CGG + Chr1:77345387-77345406 None:intergenic 30.0%
TATGCAATTCATATGAAGCT+GGG + Chr1:77345319-77345338 None:intergenic 30.0%
TATTTAAAGAAAGCTCCATC+AGG + Chr1:77345754-77345773 None:intergenic 30.0%
TCGGGATATGTAAAAATGAA+AGG + Chr1:77347817-77347836 None:intergenic 30.0%
TGAAAATAGGATATGGTTAC+AGG + Chr1:77347177-77347196 None:intergenic 30.0%
TGAAATTGTTATGTGATAGG+AGG - Chr1:77344020-77344039 MsG0180004389.01.T01:intron 30.0%
TGCGTATAATACACCAAAAA+TGG + Chr1:77345086-77345105 None:intergenic 30.0%
TTATGCAATTCATATGAAGC+TGG + Chr1:77345320-77345339 None:intergenic 30.0%
TTGTTATGTAGTTTATGCTG+AGG - Chr1:77342581-77342600 MsG0180004389.01.T01:intron 30.0%
TTTAATTCAAACCAACTGTC+AGG + Chr1:77344427-77344446 None:intergenic 30.0%
TTTGACTACCATACCTTATT+TGG - Chr1:77348199-77348218 MsG0180004389.01.T01:intron 30.0%
! AATACACTTTTATGGTCTGA+AGG - Chr1:77342105-77342124 MsG0180004389.01.T01:three_prime_UTR 30.0%
! ATGGATTAACATTCTACACA+TGG - Chr1:77344773-77344792 MsG0180004389.01.T01:CDS 30.0%
! ATGTCGCAATTTTCCAAATA+AGG + Chr1:77348215-77348234 None:intergenic 30.0%
! GAAACAAACATTTTTCCTTG+TGG - Chr1:77347674-77347693 MsG0180004389.01.T01:intron 30.0%
! GAAGAATTTACTGATGATGA+TGG - Chr1:77342741-77342760 MsG0180004389.01.T01:intron 30.0%
! GATTTGAAATCTGTATCTTG+AGG - Chr1:77342324-77342343 MsG0180004389.01.T01:intron 30.0%
! GCAATTTTCCAAATAAGGTA+TGG + Chr1:77348210-77348229 None:intergenic 30.0%
! TGCTTTATCCATCAAAGTTT+TGG + Chr1:77343844-77343863 None:intergenic 30.0%
! TGTAACCATATCCTATTTTC+AGG - Chr1:77347176-77347195 MsG0180004389.01.T01:intron 30.0%
! TGTCATTTATTTCCCAAAAG+AGG + Chr1:77344364-77344383 None:intergenic 30.0%
! TTAGAATGAGTACCTCTTTT+GGG - Chr1:77344349-77344368 MsG0180004389.01.T01:intron 30.0%
! TTCAGAATTCATCGTTTTCT+TGG + Chr1:77341766-77341785 None:intergenic 30.0%
!! AAATTTTGATGCCTAGGATT+TGG - Chr1:77342916-77342935 MsG0180004389.01.T01:intron 30.0%
!! AATTTTGATGCCTAGGATTT+GGG - Chr1:77342917-77342936 MsG0180004389.01.T01:intron 30.0%
!! CTCTGAAATGTAAATTAGCA+AGG + Chr1:77342058-77342077 None:intergenic 30.0%
!! GTTTGGCATTGATATTAGTA+AGG - Chr1:77347640-77347659 MsG0180004389.01.T01:intron 30.0%
!! TAAACTATGATTTTGACAGG+TGG + Chr1:77345708-77345727 None:intergenic 30.0%
!! TGACAGTTGGTTTGAATTAA+AGG - Chr1:77344426-77344445 MsG0180004389.01.T01:intron 30.0%
!! TTGAATTAGCTTTGAGCTTA+TGG + Chr1:77346337-77346356 None:intergenic 30.0%
!!! AGGGAAATTTTTAGCAATAG+GGG + Chr1:77343192-77343211 None:intergenic 30.0%
!!! CAATTTTTTTAGGGTGTGTT+TGG - Chr1:77343545-77343564 MsG0180004389.01.T01:intron 30.0%
!!! GAGGGAAATTTTTAGCAATA+GGG + Chr1:77343193-77343212 None:intergenic 30.0%
!!! GGCCTTGTGTTATTTATTTT+CGG + Chr1:77344957-77344976 None:intergenic 30.0%
!!! GTGTTATTTATTTTCGGTCA+AGG + Chr1:77344951-77344970 None:intergenic 30.0%
!!! TACATTGGTTTTGAAATGAC+AGG - Chr1:77343056-77343075 MsG0180004389.01.T01:intron 30.0%
AACCAAAGACACTGCTATAA+AGG - Chr1:77343504-77343523 MsG0180004389.01.T01:CDS 35.0%
AACTTGAAGGTGAATGAGTT+AGG - Chr1:77347986-77348005 MsG0180004389.01.T01:CDS 35.0%
AAGAAAAAAGGGAGATGCAT+TGG - Chr1:77345417-77345436 MsG0180004389.01.T01:intron 35.0%
AAGCTGACAAAGACAATAGA+CGG - Chr1:77345800-77345819 MsG0180004389.01.T01:intron 35.0%
AAGTTGGAAGACAAAATGCT+TGG - Chr1:77345837-77345856 MsG0180004389.01.T01:intron 35.0%
AATGCTAATCTCACATCACA+GGG + Chr1:77348469-77348488 None:intergenic 35.0%
AATTAAACCATCGTCTTCAC+TGG + Chr1:77347905-77347924 None:intergenic 35.0%
AATTCAAAGCTACGTATCAC+AGG + Chr1:77345478-77345497 None:intergenic 35.0%
AATTGTTATGTGATAGGAGG+AGG - Chr1:77344023-77344042 MsG0180004389.01.T01:intron 35.0%
ACCAAAGACACTGCTATAAA+GGG - Chr1:77343505-77343524 MsG0180004389.01.T01:CDS 35.0%
ACCCTTAAGTGTATCCATAT+GGG - Chr1:77343791-77343810 MsG0180004389.01.T01:intron 35.0%
ACTAAAACAAGATCTGGAGA+AGG + Chr1:77347539-77347558 None:intergenic 35.0%
ACTAACATGGGCAATATTGT+AGG - Chr1:77344557-77344576 MsG0180004389.01.T01:CDS 35.0%
ACTGTTATTGGTACAGGTAT+GGG + Chr1:77347215-77347234 None:intergenic 35.0%
AGCCTCTTGTGTAAAAAACA+GGG + Chr1:77345115-77345134 None:intergenic 35.0%
AGTATCACTGTTATTGGTAC+AGG + Chr1:77347221-77347240 None:intergenic 35.0%
AGTGTCTTGCCAAAGATTAA+AGG - Chr1:77345007-77345026 MsG0180004389.01.T01:intron 35.0%
ATAAGTGGGATAAGAGTCTT+AGG - Chr1:77342769-77342788 MsG0180004389.01.T01:intron 35.0%
ATCAACATAGAGCTTAACAC+GGG + Chr1:77345386-77345405 None:intergenic 35.0%
ATGTGGACGAGTTTGAAAAA+TGG - Chr1:77342610-77342629 MsG0180004389.01.T01:intron 35.0%
ATTCAGAGAATCAACAACCT+TGG + Chr1:77343951-77343970 None:intergenic 35.0%
ATTGATCCATTTACACCATC+TGG + Chr1:77346002-77346021 None:intergenic 35.0%
CAGAAGCAAATTGGAAAACA+TGG + Chr1:77346437-77346456 None:intergenic 35.0%
CGAGTTTGAAAAATGGCAAA+AGG - Chr1:77342617-77342636 MsG0180004389.01.T01:intron 35.0%
CTAAATTTCAGCAGAAAGGT+AGG - Chr1:77345619-77345638 MsG0180004389.01.T01:intron 35.0%
CTCTCAGTATTGCAATTTGT+TGG - Chr1:77346967-77346986 MsG0180004389.01.T01:intron 35.0%
CTTATTAGGAACTGTGAATC+TGG + Chr1:77348026-77348045 None:intergenic 35.0%
CTTGTGTAAAAAACAGGGTA+AGG + Chr1:77345110-77345129 None:intergenic 35.0%
GATTTCAAATCACCTCATGA+CGG + Chr1:77342315-77342334 None:intergenic 35.0%
GCATCAGAATCAGTTACTAT+CGG + Chr1:77344117-77344136 None:intergenic 35.0%
GGAGCTTTCTTTAAATATGC+AGG - Chr1:77345757-77345776 MsG0180004389.01.T01:intron 35.0%
GTAAATTCTTCTTCACCATC+AGG + Chr1:77342732-77342751 None:intergenic 35.0%
GTATGTGATAATCATCCTCA+GGG - Chr1:77347317-77347336 MsG0180004389.01.T01:intron 35.0%
GTGTCTTGCCAAAGATTAAA+GGG - Chr1:77345008-77345027 MsG0180004389.01.T01:intron 35.0%
TAAAGCACAGACAGTACATT+TGG - Chr1:77343309-77343328 MsG0180004389.01.T01:intron 35.0%
TAAGTGGGATAAGAGTCTTA+GGG - Chr1:77342770-77342789 MsG0180004389.01.T01:intron 35.0%
TAATCTTTGGCAAGACACTT+TGG + Chr1:77345006-77345025 None:intergenic 35.0%
TATTATGCTCGAAGCTTATG+TGG - Chr1:77342977-77342996 MsG0180004389.01.T01:intron 35.0%
TCATCAATAGTAACATCCTC+AGG + Chr1:77344481-77344500 None:intergenic 35.0%
TCCCATATGGATACACTTAA+GGG + Chr1:77343795-77343814 None:intergenic 35.0%
TGAAGCAAAAAATACCAGTG+TGG - Chr1:77344201-77344220 MsG0180004389.01.T01:intron 35.0%
TGTTTGGCATCTTGTCAAAT+TGG - Chr1:77343272-77343291 MsG0180004389.01.T01:intron 35.0%
TTCCCATATGGATACACTTA+AGG + Chr1:77343796-77343815 None:intergenic 35.0%
TTCCTTGTGGGTAAAGTATA+GGG - Chr1:77347687-77347706 MsG0180004389.01.T01:intron 35.0%
TTTCCTTGTGGGTAAAGTAT+AGG - Chr1:77347686-77347705 MsG0180004389.01.T01:intron 35.0%
TTTCTGCTGAAATTTAGCCA+GGG + Chr1:77345616-77345635 None:intergenic 35.0%
! AGATTTTGCATAGGTCACAT+AGG - Chr1:77343089-77343108 MsG0180004389.01.T01:CDS 35.0%
! CTCTATGTTGATAAAGAGAC+AGG - Chr1:77345394-77345413 MsG0180004389.01.T01:intron 35.0%
! CTTAGAATGAGTACCTCTTT+TGG - Chr1:77344348-77344367 MsG0180004389.01.T01:intron 35.0%
! GAAAGTGCAGAAGAAGAAAA+CGG + Chr1:77347432-77347451 None:intergenic 35.0%
! GAACTGATTCTGTTTGAAAC+AGG - Chr1:77345342-77345361 MsG0180004389.01.T01:intron 35.0%
! GTGGAAACATTTTCCAAGTA+TGG - Chr1:77344582-77344601 MsG0180004389.01.T01:CDS 35.0%
! GTTTTCTTCTTCTGCACTTT+CGG - Chr1:77347431-77347450 MsG0180004389.01.T01:CDS 35.0%
! GTTTTCTTGGAGCAATTTCT+GGG + Chr1:77341753-77341772 None:intergenic 35.0%
! TGATTTTCATTGTATGGCAC+AGG - Chr1:77346610-77346629 MsG0180004389.01.T01:intron 35.0%
! TGTTTCTGCAACTTCCATAA+AGG - Chr1:77344170-77344189 MsG0180004389.01.T01:intron 35.0%
! TTTGGATGATTTGGAGTTTC+TGG - Chr1:77346535-77346554 MsG0180004389.01.T01:intron 35.0%
!! ACATAACACAAGGCTTTGTT+TGG + Chr1:77342012-77342031 None:intergenic 35.0%
!! ACGTAGCTTTGAATTTGTCA+GGG - Chr1:77345483-77345502 MsG0180004389.01.T01:intron 35.0%
!! ACTAGTTAGTTTGTTACGGA+GGG + Chr1:77343215-77343234 None:intergenic 35.0%
!! ATGATGATGGGACATATAAG+TGG - Chr1:77342754-77342773 MsG0180004389.01.T01:intron 35.0%
!! ATTTTGATGCCTAGGATTTG+GGG - Chr1:77342918-77342937 MsG0180004389.01.T01:intron 35.0%
!! GATGACCTTTTTGAAAGAAG+AGG - Chr1:77344083-77344102 MsG0180004389.01.T01:intron 35.0%
!! TACGTAGCTTTGAATTTGTC+AGG - Chr1:77345482-77345501 MsG0180004389.01.T01:intron 35.0%
!! TACTAGTTAGTTTGTTACGG+AGG + Chr1:77343216-77343235 None:intergenic 35.0%
!! TGATGATGGGACATATAAGT+GGG - Chr1:77342755-77342774 MsG0180004389.01.T01:intron 35.0%
!! TGCATTGGTTACATATCTCA+AGG - Chr1:77345432-77345451 MsG0180004389.01.T01:intron 35.0%
!!! AAAACCTTTGAGCTTTTTCG+AGG - Chr1:77347617-77347636 MsG0180004389.01.T01:intron 35.0%
!!! AAACCTTTGAGCTTTTTCGA+GGG - Chr1:77347618-77347637 MsG0180004389.01.T01:intron 35.0%
!!! GAAAACATCAGACTAGCTTT+TGG - Chr1:77345276-77345295 MsG0180004389.01.T01:intron 35.0%
!!! GGAGGGAAATTTTTAGCAAT+AGG + Chr1:77343194-77343213 None:intergenic 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG - Chr1:77345110-77345129 MsG0180004389.01.T01:intron 35.0%
AAAAAAGCTGCAACTTGCCA+TGG - Chr1:77348416-77348435 MsG0180004389.01.T01:exon 40.0%
AAAATGTCGCAGATGTTGGA+TGG - Chr1:77341904-77341923 MsG0180004389.01.T01:three_prime_UTR 40.0%
AAACCCTCGAAAAAGCTCAA+AGG + Chr1:77347624-77347643 None:intergenic 40.0%
AAATGCACTCAGTGAACTCA+AGG + Chr1:77346048-77346067 None:intergenic 40.0%
AAGACGAATTGGGTCTTTGA+GGG + Chr1:77342185-77342204 None:intergenic 40.0%
AATCCCATCAACAAGACAGA+AGG + Chr1:77343359-77343378 None:intergenic 40.0%
AATTCAAACCAACTGTCAGG+AGG + Chr1:77344424-77344443 None:intergenic 40.0%
AATTCTTCTTCACCATCAGG+CGG + Chr1:77342729-77342748 None:intergenic 40.0%
ACCCTTTATAGCAGTGTCTT+TGG + Chr1:77343509-77343528 None:intergenic 40.0%
ACCTCATGACGGTTGTAAAA+TGG + Chr1:77342304-77342323 None:intergenic 40.0%
ACGTAGTAATCCATGAGCTT+CGG + Chr1:77348076-77348095 None:intergenic 40.0%
ACTACCTTGACTGCATCTAT+AGG + Chr1:77347104-77347123 None:intergenic 40.0%
AGAGTCTTAGGGCATATAAG+CGG - Chr1:77342781-77342800 MsG0180004389.01.T01:intron 40.0%
ATATCAACCCTCATTTCAGC+AGG + Chr1:77346697-77346716 None:intergenic 40.0%
ATCCCTATACTTTACCCACA+AGG + Chr1:77347692-77347711 None:intergenic 40.0%
ATGGCAAAAGGAGATTAAGG+AGG - Chr1:77342629-77342648 MsG0180004389.01.T01:intron 40.0%
ATGGGCAATATTGTAGGTTG+TGG - Chr1:77344563-77344582 MsG0180004389.01.T01:CDS 40.0%
CAAATTCTTACCACTGAGCT+AGG - Chr1:77342355-77342374 MsG0180004389.01.T01:intron 40.0%
CACCCTTAAGTGTATCCATA+TGG - Chr1:77343790-77343809 MsG0180004389.01.T01:intron 40.0%
CACTGTTATTGGTACAGGTA+TGG + Chr1:77347216-77347235 None:intergenic 40.0%
CAGCAAACATGGAAATACAG+AGG + Chr1:77347294-77347313 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAAAC+AGG + Chr1:77345116-77345135 None:intergenic 40.0%
CGAAGCTTATGTGGTTCATA+GGG - Chr1:77342986-77343005 MsG0180004389.01.T01:intron 40.0%
CTGGCTAAATTTCAGCAGAA+AGG - Chr1:77345615-77345634 MsG0180004389.01.T01:intron 40.0%
CTGTTATTGGTACAGGTATG+GGG + Chr1:77347214-77347233 None:intergenic 40.0%
CTTTCTGCTGAAATTTAGCC+AGG + Chr1:77345617-77345636 None:intergenic 40.0%
GAAGACAAAATGCTTGGATG+GGG - Chr1:77345843-77345862 MsG0180004389.01.T01:intron 40.0%
GAATGCTAATCTCACATCAC+AGG + Chr1:77348470-77348489 None:intergenic 40.0%
GACGGTTGTAAAATGGTCAA+TGG + Chr1:77342297-77342316 None:intergenic 40.0%
GCGTGCATAGAATTGATGAA+TGG - Chr1:77347380-77347399 MsG0180004389.01.T01:CDS 40.0%
GCTTCAGTTGTCTTCCTTTA+TGG + Chr1:77344187-77344206 None:intergenic 40.0%
GGAAGACAAAATGCTTGGAT+GGG - Chr1:77345842-77345861 MsG0180004389.01.T01:intron 40.0%
GGAGAGAATCAACAACAACT+TGG - Chr1:77341936-77341955 MsG0180004389.01.T01:three_prime_UTR 40.0%
GGGGTTCTTGCAATATTTCA+AGG + Chr1:77348055-77348074 None:intergenic 40.0%
GGTATGTGATAATCATCCTC+AGG - Chr1:77347316-77347335 MsG0180004389.01.T01:intron 40.0%
GTCAAACACAACAGAAACAC+AGG + Chr1:77347260-77347279 None:intergenic 40.0%
GTGTTTGGATTGAGGGTTTA+GGG - Chr1:77343560-77343579 MsG0180004389.01.T01:intron 40.0%
GTTGTTGTCATGTGACTGAA+AGG + Chr1:77345161-77345180 None:intergenic 40.0%
TAAACCTAACCCCAAATCCT+AGG + Chr1:77342930-77342949 None:intergenic 40.0%
TAATTAACCATGCCACAGTC+CGG - Chr1:77347920-77347939 MsG0180004389.01.T01:intron 40.0%
TAGTTAACTATCACTCCTGC+TGG - Chr1:77345726-77345745 MsG0180004389.01.T01:CDS 40.0%
TATAAGCAGCATAGCCTACT+TGG - Chr1:77347491-77347510 MsG0180004389.01.T01:CDS 40.0%
TATTGACCTCATTCTGTTCC+AGG - Chr1:77344388-77344407 MsG0180004389.01.T01:intron 40.0%
TCAACATAGAGCTTAACACG+GGG + Chr1:77345385-77345404 None:intergenic 40.0%
TCACACTCACAGAAGCAAAT+TGG + Chr1:77346446-77346465 None:intergenic 40.0%
TCACAGTTCCTAATAAGTCC+AGG - Chr1:77348029-77348048 MsG0180004389.01.T01:CDS 40.0%
TCAGTGAACTCAAGGATCAA+CGG + Chr1:77346040-77346059 None:intergenic 40.0%
TCGAAGCTTATGTGGTTCAT+AGG - Chr1:77342985-77343004 MsG0180004389.01.T01:intron 40.0%
TCTTGCAATATTTCAAGGCC+TGG + Chr1:77348050-77348069 None:intergenic 40.0%
TGGAAGACAAAATGCTTGGA+TGG - Chr1:77345841-77345860 MsG0180004389.01.T01:intron 40.0%
TGTACCTCAGAGAAGACATA+AGG + Chr1:77341963-77341982 None:intergenic 40.0%
TGTATATCAGGAACCATCAG+TGG - Chr1:77345524-77345543 MsG0180004389.01.T01:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - Chr1:77343559-77343578 MsG0180004389.01.T01:intron 40.0%
TGTTTGGATTGAGGGTTTAG+GGG - Chr1:77343561-77343580 MsG0180004389.01.T01:intron 40.0%
TTAACCAAAACAACACCCTG+AGG + Chr1:77347335-77347354 None:intergenic 40.0%
TTACCCTTCTGTCTTGCAAA+AGG - Chr1:77345200-77345219 MsG0180004389.01.T01:intron 40.0%
TTAGGGTGTGTTTGGATTGA+GGG - Chr1:77343553-77343572 MsG0180004389.01.T01:intron 40.0%
TTTCAAGGCCTGGACTTATT+AGG + Chr1:77348040-77348059 None:intergenic 40.0%
! ACAACCTTTTGCAAGACAGA+AGG + Chr1:77345207-77345226 None:intergenic 40.0%
! ACACTGAAGGTGTATTAAGG+TGG - Chr1:77343147-77343166 MsG0180004389.01.T01:intron 40.0%
! ACCATAGCTGTCCATCATTT+TGG - Chr1:77346778-77346797 MsG0180004389.01.T01:intron 40.0%
! ACCATTTTACAACCGTCATG+AGG - Chr1:77342300-77342319 MsG0180004389.01.T01:intron 40.0%
! ATTGTCTTTGTCAGCTTGCT+TGG + Chr1:77345797-77345816 None:intergenic 40.0%
! CAACCTTTTGCAAGACAGAA+GGG + Chr1:77345206-77345225 None:intergenic 40.0%
! CGTTTTCTTGGAGCAATTTC+TGG + Chr1:77341754-77341773 None:intergenic 40.0%
! CTAGCAATCCAACTTTTGGA+TGG - Chr1:77345549-77345568 MsG0180004389.01.T01:intron 40.0%
! GAACCTTCTGTCTTGTTGAT+GGG - Chr1:77343353-77343372 MsG0180004389.01.T01:intron 40.0%
! GATACACTTAAGGGTGTGTT+TGG + Chr1:77343786-77343805 None:intergenic 40.0%
! GCTATGCTGCTTATATGACA+AGG + Chr1:77347486-77347505 None:intergenic 40.0%
! GCTGTCCATCATTTTGGATT+TGG - Chr1:77346784-77346803 MsG0180004389.01.T01:intron 40.0%
! TGAACCTTCTGTCTTGTTGA+TGG - Chr1:77343352-77343371 MsG0180004389.01.T01:intron 40.0%
! TGAGTTCACTGAGTGCATTT+TGG - Chr1:77346048-77346067 MsG0180004389.01.T01:intron 40.0%
! TGTATTTCCATGTTTGCTGC+AGG - Chr1:77347295-77347314 MsG0180004389.01.T01:intron 40.0%
! TTTAGGGTGTGTTTGGATTG+AGG - Chr1:77343552-77343571 MsG0180004389.01.T01:intron 40.0%
! TTTTCATTGTATGGCACAGG+TGG - Chr1:77346613-77346632 MsG0180004389.01.T01:intron 40.0%
!! GCTAGTTCTAAAGAGTTGCT+TGG + Chr1:77344978-77344997 None:intergenic 40.0%
!! TATGTCTTCTCTGAGGTACA+AGG - Chr1:77341963-77341982 MsG0180004389.01.T01:three_prime_UTR 40.0%
!! TCCAAAATGATGGACAGCTA+TGG + Chr1:77346782-77346801 None:intergenic 40.0%
!! TTACACAAGAGGCTGTTTTC+AGG - Chr1:77345121-77345140 MsG0180004389.01.T01:intron 40.0%
!! TTTAACTGAGCTTGTTACGC+AGG - Chr1:77341879-77341898 MsG0180004389.01.T01:three_prime_UTR 40.0%
!!! AACATCAGACTAGCTTTTGG+AGG - Chr1:77345279-77345298 MsG0180004389.01.T01:intron 40.0%
!!! AGACTAGCTTTTGGAGGTTT+TGG - Chr1:77345285-77345304 MsG0180004389.01.T01:intron 40.0%
!!! GCATGCTGACTTTCTTTTGT+TGG - Chr1:77347513-77347532 MsG0180004389.01.T01:CDS 40.0%
!!! TTTGAGCTTTTTCGAGGGTT+TGG - Chr1:77347623-77347642 MsG0180004389.01.T01:intron 40.0%
AAAGAGGAATGCACGAAGCT+TGG - Chr1:77347077-77347096 MsG0180004389.01.T01:CDS 45.0%
AAAGGAGATTAAGGAGGCTG+AGG - Chr1:77342635-77342654 MsG0180004389.01.T01:intron 45.0%
AACTCAAGGATCAACGGACA+TGG + Chr1:77346034-77346053 None:intergenic 45.0%
AATACCAGTGTGGTAGCTGT+TGG - Chr1:77344211-77344230 MsG0180004389.01.T01:intron 45.0%
AATTAACCATGCCACAGTCC+GGG - Chr1:77347921-77347940 MsG0180004389.01.T01:intron 45.0%
ACAGGGTCAATCAACACCAA+TGG + Chr1:77348452-77348471 None:intergenic 45.0%
ACATGTGCCCAGAAAAGGAA+GGG + Chr1:77344917-77344936 None:intergenic 45.0%
ACCTGCAGTTGAAGACGAAT+TGG + Chr1:77342196-77342215 None:intergenic 45.0%
ACTCAAGGATCAACGGACAT+GGG + Chr1:77346033-77346052 None:intergenic 45.0%
AGAAAGTCAGCATGCCAAGT+AGG + Chr1:77347508-77347527 None:intergenic 45.0%
AGAAGTTAGCGTGTACCAGT+AGG + Chr1:77341819-77341838 None:intergenic 45.0%
AGAGGAAGATGCTAAGCGAT+TGG - Chr1:77347948-77347967 MsG0180004389.01.T01:intron 45.0%
ATACATGCCAGTGAAGACGA+TGG - Chr1:77347895-77347914 MsG0180004389.01.T01:intron 45.0%
ATACCAGTGTGGTAGCTGTT+GGG - Chr1:77344212-77344231 MsG0180004389.01.T01:intron 45.0%
ATCTTATCACCAGGCCGAAA+AGG + Chr1:77345579-77345598 None:intergenic 45.0%
CAAGTGGAAGCTTCGGAATT+CGG - Chr1:77342660-77342679 MsG0180004389.01.T01:intron 45.0%
CAGGACTGAACATATAGCGA+AGG + Chr1:77346678-77346697 None:intergenic 45.0%
CCAAAGATTAAAGGGCAACC+TGG - Chr1:77345016-77345035 MsG0180004389.01.T01:intron 45.0%
CCAATGGCGTTAATGTTCCA+TGG + Chr1:77348436-77348455 None:intergenic 45.0%
CCAGGTTGCCCTTTAATCTT+TGG + Chr1:77345019-77345038 None:intergenic 45.0%
CCATGGAACATTAACGCCAT+TGG - Chr1:77348433-77348452 MsG0180004389.01.T01:five_prime_UTR 45.0%
CCTGCAGTTGAAGACGAATT+GGG + Chr1:77342195-77342214 None:intergenic 45.0%
CGTAGTAATCCATGAGCTTC+GGG + Chr1:77348075-77348094 None:intergenic 45.0%
CTGCAAAACTGCAAAAAGCG+AGG + Chr1:77348105-77348124 None:intergenic 45.0%
GAAGACGAATTGGGTCTTTG+AGG + Chr1:77342186-77342205 None:intergenic 45.0%
GACATCGGAATCTTATCACC+AGG + Chr1:77345588-77345607 None:intergenic 45.0%
GAGTCTTAGGGCATATAAGC+GGG - Chr1:77342782-77342801 MsG0180004389.01.T01:intron 45.0%
GATGTTGGATGGTACGTTCT+TGG - Chr1:77341915-77341934 MsG0180004389.01.T01:three_prime_UTR 45.0%
GCTAATAACCTCCTGACAGT+TGG - Chr1:77344413-77344432 MsG0180004389.01.T01:intron 45.0%
GGTCTGAAGGAAGAACTGAA+TGG - Chr1:77342118-77342137 MsG0180004389.01.T01:three_prime_UTR 45.0%
GGTGAAAATGTCGCAGATGT+TGG - Chr1:77341900-77341919 MsG0180004389.01.T01:three_prime_UTR 45.0%
GTAGTAATCCATGAGCTTCG+GGG + Chr1:77348074-77348093 None:intergenic 45.0%
GTCATCTCTTCAACCCCATA+AGG + Chr1:77344069-77344088 None:intergenic 45.0%
GTCATGTGACTGAAAGGTCA+CGG + Chr1:77345155-77345174 None:intergenic 45.0%
GTGTGTTTGGATGGAGGTTT+AGG + Chr1:77343773-77343792 None:intergenic 45.0%
GTTCAGTCCTGCTGAAATGA+GGG - Chr1:77346687-77346706 MsG0180004389.01.T01:intron 45.0%
GTTTGGATGGAGGTTTAGGA+GGG + Chr1:77343769-77343788 None:intergenic 45.0%
GTTTGGATTGAGGGTTTAGG+GGG - Chr1:77343562-77343581 MsG0180004389.01.T01:intron 45.0%
TAGCATCTTCCTCTAGATCC+CGG + Chr1:77347942-77347961 None:intergenic 45.0%
TAGCGAAGGACAACAGTTGT+TGG + Chr1:77346664-77346683 None:intergenic 45.0%
TAGCTTCCTGGAACAGAATG+AGG + Chr1:77344397-77344416 None:intergenic 45.0%
TCACATACCTGCAGCAAACA+TGG + Chr1:77347305-77347324 None:intergenic 45.0%
TCATGTGACTGAAAGGTCAC+GGG + Chr1:77345154-77345173 None:intergenic 45.0%
TGGACCTATAGATGCAGTCA+AGG - Chr1:77347097-77347116 MsG0180004389.01.T01:intron 45.0%
TGGGTTTCTATTCGCTACAG+TGG + Chr1:77341734-77341753 None:intergenic 45.0%
TGGTCCTTATGTCTTCTCTG+AGG - Chr1:77341956-77341975 MsG0180004389.01.T01:three_prime_UTR 45.0%
TGTTCAGTCCTGCTGAAATG+AGG - Chr1:77346686-77346705 MsG0180004389.01.T01:intron 45.0%
TGTTTGGATGGAGGTTTAGG+AGG + Chr1:77343770-77343789 None:intergenic 45.0%
TTATGCTGAGGCTGAAGATG+TGG - Chr1:77342593-77342612 MsG0180004389.01.T01:intron 45.0%
TTTGGATGGAGGTTTAGGAG+GGG + Chr1:77343768-77343787 None:intergenic 45.0%
TTTGGATTGAGGGTTTAGGG+GGG - Chr1:77343563-77343582 MsG0180004389.01.T01:intron 45.0%
! CACTTAAGGGTGTGTTTGGA+TGG + Chr1:77343782-77343801 None:intergenic 45.0%
! CAGTTTGGTGAGGAACTTGA+AGG - Chr1:77347973-77347992 MsG0180004389.01.T01:intron 45.0%
! GCTGCGGATTTGAGATGAAA+AGG + Chr1:77341850-77341869 None:intergenic 45.0%
! GGCAGACACTTCTTTTCTTC+TGG + Chr1:77344259-77344278 None:intergenic 45.0%
! GGGACACTGAAGGTGTATTA+AGG - Chr1:77343144-77343163 MsG0180004389.01.T01:intron 45.0%
! TCAGGAGGTTATTAGCTTCC+TGG + Chr1:77344409-77344428 None:intergenic 45.0%
! TGAAGCAAGAAAGCATGCTG+TGG - Chr1:77346463-77346482 MsG0180004389.01.T01:intron 45.0%
! TTAAGGGTGTGTTTGGATGG+AGG + Chr1:77343779-77343798 None:intergenic 45.0%
! TTTTGGATGGTGCGCCTTTT+CGG - Chr1:77345562-77345581 MsG0180004389.01.T01:intron 45.0%
!! AGTTAGTTTGTTACGGAGGG+AGG + Chr1:77343212-77343231 None:intergenic 45.0%
!! GGCTCTAGCAATCCAACTTT+TGG - Chr1:77345545-77345564 MsG0180004389.01.T01:intron 45.0%
!! GTTAGTTTGTTACGGAGGGA+GGG + Chr1:77343211-77343230 None:intergenic 45.0%
!!! TCATCCTCAGGGTGTTGTTT+TGG - Chr1:77347328-77347347 MsG0180004389.01.T01:intron 45.0%
!!! ATTTTTTTAATTTTTATGAA+TGG - Chr1:77344863-77344882 MsG0180004389.01.T01:intron 5.0%
AAAGCTCGTGTACCAACCTG+AGG + Chr1:77342810-77342829 None:intergenic 50.0%
AAGGCGCACCATCCAAAAGT+TGG + Chr1:77345560-77345579 None:intergenic 50.0%
AAGGTGTAGCCCAGTGGTAT+GGG - Chr1:77343119-77343138 MsG0180004389.01.T01:CDS 50.0%
AGGTCACATAGGATCCCTGA+AGG - Chr1:77343100-77343119 MsG0180004389.01.T01:CDS 50.0%
ATGCTTGGATGGGGTATGCT+TGG - Chr1:77345852-77345871 MsG0180004389.01.T01:intron 50.0%
ATGGAGGTTTAGGAGGGGAA+GGG + Chr1:77343763-77343782 None:intergenic 50.0%
ATTGAGGGTTTAGGGGGGAA+GGG - Chr1:77343568-77343587 MsG0180004389.01.T01:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG - Chr1:77345177-77345196 MsG0180004389.01.T01:intron 50.0%
CACAATCAACCGCAACCTAC+TGG - Chr1:77341801-77341820 MsG0180004389.01.T01:three_prime_UTR 50.0%
CACATGTGCCCAGAAAAGGA+AGG + Chr1:77344918-77344937 None:intergenic 50.0%
CACATGTGTAGCGATGCACT+GGG + Chr1:77346758-77346777 None:intergenic 50.0%
CAGTAGGTTGCGGTTGATTG+TGG + Chr1:77341803-77341822 None:intergenic 50.0%
CATGTGCCCAGAAAAGGAAG+GGG + Chr1:77344916-77344935 None:intergenic 50.0%
CCCAATTCGTCTTCAACTGC+AGG - Chr1:77342192-77342211 MsG0180004389.01.T01:CDS 50.0%
GCAAGACAGAAGGGTAACCT+TGG + Chr1:77345197-77345216 None:intergenic 50.0%
GCTAAGCGATTGGAGCAGTT+TGG - Chr1:77347958-77347977 MsG0180004389.01.T01:intron 50.0%
GCTTATGTGGTTCATAGGGC+TGG - Chr1:77342990-77343009 MsG0180004389.01.T01:intron 50.0%
TAGCGTGTACCAGTAGGTTG+CGG + Chr1:77341813-77341832 None:intergenic 50.0%
TAGGGGTCGAACACTAGAGT+CGG + Chr1:77343175-77343194 None:intergenic 50.0%
TATTCGCTACAGTGGCAGCA+AGG + Chr1:77341726-77341745 None:intergenic 50.0%
TCACATGTGTAGCGATGCAC+TGG + Chr1:77346759-77346778 None:intergenic 50.0%
TGAGCACATGTGCCCAGAAA+AGG + Chr1:77344922-77344941 None:intergenic 50.0%
TGGATTGCTAGAGCCACTGA+TGG + Chr1:77345540-77345559 None:intergenic 50.0%
TTAGCCAGGGAGACAGACAT+CGG + Chr1:77345603-77345622 None:intergenic 50.0%
TTATGTCACTGGGTTGCCTG+AGG - Chr1:77344462-77344481 MsG0180004389.01.T01:intron 50.0%
! AAAATGGTGGGACCCCTTAC+CGG + Chr1:77345070-77345089 None:intergenic 50.0%
! CTGGTAGCGCTTTGCCTTAT+GGG - Chr1:77344052-77344071 MsG0180004389.01.T01:intron 50.0%
! GAGCTTAACACGGGGCTTTT+TGG + Chr1:77345377-77345396 None:intergenic 50.0%
! GATGCCTAGGATTTGGGGTT+AGG - Chr1:77342923-77342942 MsG0180004389.01.T01:intron 50.0%
! GTAAGGGGTCCCACCATTTT+TGG - Chr1:77345070-77345089 MsG0180004389.01.T01:intron 50.0%
! GTCGTCGTCTCTAGAAACCA+CGG - Chr1:77341674-77341693 MsG0180004389.01.T01:three_prime_UTR 50.0%
! TATAAGCGGGTTCCTCAGGT+TGG - Chr1:77342795-77342814 MsG0180004389.01.T01:CDS 50.0%
! TCGTCGTCTCTAGAAACCAC+GGG - Chr1:77341675-77341694 MsG0180004389.01.T01:three_prime_UTR 50.0%
! TCTGGTAGCGCTTTGCCTTA+TGG - Chr1:77344051-77344070 MsG0180004389.01.T01:intron 50.0%
! TGGTAGCGCTTTGCCTTATG+GGG - Chr1:77344053-77344072 MsG0180004389.01.T01:intron 50.0%
!! ATGCAATGAAAGAGTGCCCG+TGG + Chr1:77341694-77341713 None:intergenic 50.0%
!! CAAGGACAGAAAAGGTGCTC+AGG - Chr1:77347358-77347377 MsG0180004389.01.T01:intron 50.0%
!!! ACACGGGGCTTTTTGGTTTC+TGG + Chr1:77345370-77345389 None:intergenic 50.0%
AAGGGTAACCTTGGCGCAAC+TGG + Chr1:77345188-77345207 None:intergenic 55.0%
ACCACTGGGCTACACCTTCA+GGG + Chr1:77343117-77343136 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG - Chr1:77345042-77345061 MsG0180004389.01.T01:intron 55.0%
AGACCTTCAACACCGCCTGA+TGG - Chr1:77342714-77342733 MsG0180004389.01.T01:intron 55.0%
AGGGGTCGAACACTAGAGTC+GGG + Chr1:77343174-77343193 None:intergenic 55.0%
AGGTTTAGGAGGGGAAGGGA+GGG + Chr1:77343759-77343778 None:intergenic 55.0%
AGTGTCCCAACCCATACCAC+TGG + Chr1:77343132-77343151 None:intergenic 55.0%
CACTGTCAGCATATCGCACG+AGG - Chr1:77342265-77342284 MsG0180004389.01.T01:CDS 55.0%
CTAAAGCTCCCGCATACGCA+GGG - Chr1:77345043-77345062 MsG0180004389.01.T01:intron 55.0%
CTTCCCAACAGCTACCACAC+TGG + Chr1:77344218-77344237 None:intergenic 55.0%
GATGGAGGTTTAGGAGGGGA+AGG + Chr1:77343764-77343783 None:intergenic 55.0%
GATTCCGATGTCTGTCTCCC+TGG - Chr1:77345596-77345615 MsG0180004389.01.T01:intron 55.0%
GATTGAGGGTTTAGGGGGGA+AGG - Chr1:77343567-77343586 MsG0180004389.01.T01:intron 55.0%
GTAGCCCAGTGGTATGGGTT+GGG - Chr1:77343124-77343143 MsG0180004389.01.T01:CDS 55.0%
GTGGAAGCTTCGGAATTCGG+TGG - Chr1:77342663-77342682 MsG0180004389.01.T01:intron 55.0%
GTGTCCCAACCCATACCACT+GGG + Chr1:77343131-77343150 None:intergenic 55.0%
GTGTGGTAGCTGTTGGGAAG+AGG - Chr1:77344218-77344237 MsG0180004389.01.T01:intron 55.0%
TACCACTGGGCTACACCTTC+AGG + Chr1:77343118-77343137 None:intergenic 55.0%
TGAGGCGCAAGTGGAAGCTT+CGG - Chr1:77342653-77342672 MsG0180004389.01.T01:intron 55.0%
TGCAAGAACCCCGAAGCTCA+TGG - Chr1:77348063-77348082 MsG0180004389.01.T01:CDS 55.0%
TGTAGCCCAGTGGTATGGGT+TGG - Chr1:77343123-77343142 MsG0180004389.01.T01:CDS 55.0%
TTCCTCTAGATCCCGGACTG+TGG + Chr1:77347935-77347954 None:intergenic 55.0%
! GAAGCTTCGGAATTCGGTGG+TGG - Chr1:77342666-77342685 MsG0180004389.01.T01:intron 55.0%
! GAAGGTGTAGCCCAGTGGTA+TGG - Chr1:77343118-77343137 MsG0180004389.01.T01:CDS 55.0%
! GCGATTGGAGCAGTTTGGTG+AGG - Chr1:77347963-77347982 MsG0180004389.01.T01:intron 55.0%
! GGCATATAAGCGGGTTCCTC+AGG - Chr1:77342791-77342810 MsG0180004389.01.T01:CDS 55.0%
! TCACCATCAGGCGGTGTTGA+AGG + Chr1:77342720-77342739 None:intergenic 55.0%
! TGGGAGCCCCTTCCTTTTCT+GGG - Chr1:77344907-77344926 MsG0180004389.01.T01:intron 55.0%
! TTGGGAGCCCCTTCCTTTTC+TGG - Chr1:77344906-77344925 MsG0180004389.01.T01:intron 55.0%
!! CACTTGCTGTCCTAGCTCAG+TGG + Chr1:77342368-77342387 None:intergenic 55.0%
!! GGTATGGGTTGGGACACTGA+AGG - Chr1:77343134-77343153 MsG0180004389.01.T01:CDS 55.0%
!! TTCGGTGGTGGTGGTGTAGT+AGG - Chr1:77342678-77342697 MsG0180004389.01.T01:intron 55.0%
AAGCTCCATCAGGCACCAGC+AGG + Chr1:77345744-77345763 None:intergenic 60.0%
AGGGTTTAGGGGGGAAGGGA+GGG - Chr1:77343572-77343591 MsG0180004389.01.T01:intron 60.0%
CATACGCAGGGTCCGGTAAG+GGG - Chr1:77345055-77345074 MsG0180004389.01.T01:intron 60.0%
CTAGATCCCGGACTGTGGCA+TGG + Chr1:77347930-77347949 None:intergenic 60.0%
CTTACCGGACCCTGCGTATG+CGG + Chr1:77345055-77345074 None:intergenic 60.0%
GAGGTTTAGGAGGGGAAGGG+AGG + Chr1:77343760-77343779 None:intergenic 60.0%
GCATACGCAGGGTCCGGTAA+GGG - Chr1:77345054-77345073 MsG0180004389.01.T01:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + Chr1:77343758-77343777 None:intergenic 60.0%
TAAGGAGGCTGAGGCGCAAG+TGG - Chr1:77342644-77342663 MsG0180004389.01.T01:intron 60.0%
TCACTCCTGCTGGTGCCTGA+TGG - Chr1:77345736-77345755 MsG0180004389.01.T01:CDS 60.0%
TGATAGGAGGAGGCCACGTC+TGG - Chr1:77344033-77344052 MsG0180004389.01.T01:intron 60.0%
TGCCACAGTCCGGGATCTAG+AGG - Chr1:77347930-77347949 MsG0180004389.01.T01:intron 60.0%
TTACCGGACCCTGCGTATGC+GGG + Chr1:77345054-77345073 None:intergenic 60.0%
! AGGCAAAGCGCTACCAGACG+TGG + Chr1:77344049-77344068 None:intergenic 60.0%
! GCTTCGGAATTCGGTGGTGG+TGG - Chr1:77342669-77342688 MsG0180004389.01.T01:intron 60.0%
! TCCCTGAAGGTGTAGCCCAG+TGG - Chr1:77343113-77343132 MsG0180004389.01.T01:CDS 60.0%
! TGCGGGAGCTTTAGTGCACC+AGG + Chr1:77345037-77345056 None:intergenic 60.0%
CGCATACGCAGGGTCCGGTA+AGG - Chr1:77345053-77345072 MsG0180004389.01.T01:intron 65.0%
GAGGGTTTAGGGGGGAAGGG+AGG - Chr1:77343571-77343590 MsG0180004389.01.T01:intron 65.0%
GGGTTTAGGGGGGAAGGGAG+GGG - Chr1:77343573-77343592 MsG0180004389.01.T01:intron 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG + Chr1:77343754-77343773 None:intergenic 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG + Chr1:77343755-77343774 None:intergenic 65.0%
TTAGGGGGGAAGGGAGGGGA+TGG - Chr1:77343577-77343596 MsG0180004389.01.T01:intron 65.0%
! GATGGTGCGCCTTTTCGGCC+TGG - Chr1:77345567-77345586 MsG0180004389.01.T01:intron 65.0%
GCTCCCGCATACGCAGGGTC+CGG - Chr1:77345048-77345067 MsG0180004389.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 77341668 77348524 77341668 ID=MsG0180004389.01;Name=MsG0180004389.01
Chr1 mRNA 77341668 77348524 77341668 ID=MsG0180004389.01.T01;Parent=MsG0180004389.01;Name=MsG0180004389.01.T01;_AED=0.38;_eAED=0.40;_QI=106|0.63|0.83|1|1|1|12|522|390
Chr1 exon 77341668 77342313 77341668 ID=MsG0180004389.01.T01:exon:14923;Parent=MsG0180004389.01.T01
Chr1 exon 77342784 77342875 77342784 ID=MsG0180004389.01.T01:exon:14922;Parent=MsG0180004389.01.T01
Chr1 exon 77343074 77343154 77343074 ID=MsG0180004389.01.T01:exon:14921;Parent=MsG0180004389.01.T01
Chr1 exon 77343484 77343560 77343484 ID=MsG0180004389.01.T01:exon:14920;Parent=MsG0180004389.01.T01
Chr1 exon 77344556 77344658 77344556 ID=MsG0180004389.01.T01:exon:14919;Parent=MsG0180004389.01.T01
Chr1 exon 77344739 77344828 77344739 ID=MsG0180004389.01.T01:exon:14918;Parent=MsG0180004389.01.T01
Chr1 exon 77345691 77345760 77345691 ID=MsG0180004389.01.T01:exon:14917;Parent=MsG0180004389.01.T01
Chr1 exon 77347058 77347101 77347058 ID=MsG0180004389.01.T01:exon:14916;Parent=MsG0180004389.01.T01
Chr1 exon 77347380 77347600 77347380 ID=MsG0180004389.01.T01:exon:14915;Parent=MsG0180004389.01.T01
Chr1 exon 77347979 77348116 77347979 ID=MsG0180004389.01.T01:exon:14914;Parent=MsG0180004389.01.T01
Chr1 exon 77348208 77348291 77348208 ID=MsG0180004389.01.T01:exon:14913;Parent=MsG0180004389.01.T01
Chr1 exon 77348370 77348524 77348370 ID=MsG0180004389.01.T01:exon:14912;Parent=MsG0180004389.01.T01
Chr1 five_prime_UTR 77348419 77348524 77348419 ID=MsG0180004389.01.T01:five_prime_utr;Parent=MsG0180004389.01.T01
Chr1 CDS 77348370 77348418 77348370 ID=MsG0180004389.01.T01:cds;Parent=MsG0180004389.01.T01
Chr1 CDS 77348208 77348291 77348208 ID=MsG0180004389.01.T01:cds;Parent=MsG0180004389.01.T01
Chr1 CDS 77347979 77348116 77347979 ID=MsG0180004389.01.T01:cds;Parent=MsG0180004389.01.T01
Chr1 CDS 77347380 77347600 77347380 ID=MsG0180004389.01.T01:cds;Parent=MsG0180004389.01.T01
Chr1 CDS 77347058 77347101 77347058 ID=MsG0180004389.01.T01:cds;Parent=MsG0180004389.01.T01
Chr1 CDS 77345691 77345760 77345691 ID=MsG0180004389.01.T01:cds;Parent=MsG0180004389.01.T01
Chr1 CDS 77344739 77344828 77344739 ID=MsG0180004389.01.T01:cds;Parent=MsG0180004389.01.T01
Chr1 CDS 77344556 77344658 77344556 ID=MsG0180004389.01.T01:cds;Parent=MsG0180004389.01.T01
Chr1 CDS 77343484 77343560 77343484 ID=MsG0180004389.01.T01:cds;Parent=MsG0180004389.01.T01
Chr1 CDS 77343074 77343154 77343074 ID=MsG0180004389.01.T01:cds;Parent=MsG0180004389.01.T01
Chr1 CDS 77342784 77342875 77342784 ID=MsG0180004389.01.T01:cds;Parent=MsG0180004389.01.T01
Chr1 CDS 77342190 77342313 77342190 ID=MsG0180004389.01.T01:cds;Parent=MsG0180004389.01.T01
Chr1 three_prime_UTR 77341668 77342189 77341668 ID=MsG0180004389.01.T01:three_prime_utr;Parent=MsG0180004389.01.T01
Gene Sequence

>MsG0180004389.01.T01

ATGAATTCTGAAAATGGCTACGAAAGCCACAATCAACCGCAACCTACTGGTGAAAATGTCGCAGATGTTGGATGGTACGTTCTTGGAGAGAATCAACAACAACTTGGTCCTTATGTCTTCTCTGAGGTACAAGAGCATTTCTTAAATGGATACCTATCAGAAAATACACTTTTATGGTCTGAAGGAAGAACTGAATGGCAGCCTTTGTCTTCAATTTCTGAATTATGGGATCAAATTAACCCTCAAAGACCCAATTCGTCTTCAACTGCAGTTTATGCTGAGGCTGAAGATGTGGACGAGTTTGAAAAATGGCAAAAGGAGATTAAGGAGGCTGAGGCGCAAGTGGAAGCTTCGGAATTCGGTGGTGGTGGTGTAGTAGGAGAAGACATTGAGAGACCTTCAACACCGCCTGATGGTGAAGAAGAATTTACTGATGATGATGGGACATATAAGTGGGATAAGAGTCTTAGGGCATATAAGCGGGTTCCTCAGATTTTGCATAGGTCACATAGGATCCCTGAAGGTGTAGCCCAGTGTTGGTTTGAATTAAAGGTCAATACACATGTTTATGTCACTGGGTTGCCTGAGGATGTTACTATTGATGAAGATCCAGAAACCAAAAAGCCCCGTGTTAAGCTCTATGTTGATAAAGAGACAGGAAGAAAAAAGGGAGATGCATTGGTTACATATCTCAAGGAACCATCAGTGGCTCTAGCAATCCAACTTTTGGATGGTGCGCCTTTTCGGCCTGGTGATAAGATTCCGATGTCTGTCTCCCTGGCTAAATTTCAGCAGAAAGGTGGTCGTGATGATTCAAAAGTTTTAATTCCAACAACTGTTGTCCTTCGCTATATGTTCAGTCCTGCTGAAATGAGGGCTGATGAAAATTTGCACTCAGAACTAGAAGAAGATGTTAAAGAGGAATGCACGAAGCTTGGACCTATAGATGCAGTCAAGGTATGTGATAATCATCCTCAGGGTGTTGTTTTGGTTAAATTCAAGGACAGAAAAGGTGCTCAGGCGTGCATAGAATTGATGAATGGAAGATGGTTTGGTGGTAGACAGATACATGCCAGTGAAGACGATGGTTTAATTAACCATGCCACAGTCCGGGATCTAGAGGAAGATGCTAAGCGATTGGAGCAGTTTGGTGAGGAACTTGAAGGTGAATGA

Protein sequence

>MsG0180004389.01.T01

MNSENGYESHNQPQPTGENVADVGWYVLGENQQQLGPYVFSEVQEHFLNGYLSENTLLWSEGRTEWQPLSSISELWDQINPQRPNSSSTAVYAEAEDVDEFEKWQKEIKEAEAQVEASEFGGGGVVGEDIERPSTPPDGEEEFTDDDGTYKWDKSLRAYKRVPQILHRSHRIPEGVAQCWFELKVNTHVYVTGLPEDVTIDEDPETKKPRVKLYVDKETGRKKGDALVTYLKEPSVALAIQLLDGAPFRPGDKIPMSVSLAKFQQKGGRDDSKVLIPTTVVLRYMFSPAEMRADENLHSELEEDVKEECTKLGPIDAVKVCDNHPQGVVLVKFKDRKGAQACIELMNGRWFGGRQIHASEDDGLINHATVRDLEEDAKRLEQFGEELEGE*