Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880044058.01.T01 | XP_013445286.1 | 95.349 | 172 | 8 | 0 | 1 | 172 | 24 | 195 | 5.46E-117 | 339 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880044058.01.T01 | O64865 | 50.568 | 176 | 71 | 3 | 3 | 163 | 27 | 201 | 8.99E-57 | 180 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880044058.01.T01 | A0A072TPI6 | 95.349 | 172 | 8 | 0 | 1 | 172 | 24 | 195 | 2.61e-117 | 339 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080049008.01 | MsG0880044058.01 | 0.810928 | 9.032240e-51 | 5.516544e-48 |
MsG0880044058.01 | MsG0880044545.01 | -0.808092 | 3.671167e-50 | 2.080044e-47 |
MsG0880044058.01 | MsG0880046010.01 | -0.807205 | 5.663792e-50 | 3.135580e-47 |
MsG0880044058.01 | MsG0880047664.01 | 0.808153 | 3.561551e-50 | 2.021305e-47 |
MsG0780041100.01 | MsG0880044058.01 | 0.800313 | 1.528130e-48 | 7.093140e-46 |
MsG0880043550.01 | MsG0880044058.01 | 0.817376 | 3.405690e-52 | 2.476049e-49 |
MsG0880043915.01 | MsG0880044058.01 | -0.801934 | 7.123046e-49 | 3.444644e-46 |
MsG0280011281.01 | MsG0880044058.01 | -0.804681 | 1.922301e-49 | 9.973859e-47 |
MsG0380013843.01 | MsG0880044058.01 | 0.824556 | 7.569951e-54 | 6.728413e-51 |
MsG0480020932.01 | MsG0880044058.01 | 0.803028 | 4.237324e-49 | 2.107035e-46 |
MsG0480021226.01 | MsG0880044058.01 | 0.819517 | 1.114025e-52 | 8.591837e-50 |
MsG0480023322.01 | MsG0880044058.01 | 0.820228 | 7.664699e-53 | 6.029260e-50 |
MsG0480023851.01 | MsG0880044058.01 | -0.812267 | 4.619904e-51 | 2.924043e-48 |
MsG0580025153.01 | MsG0880044058.01 | -0.832529 | 8.975793e-56 | 1.005947e-52 |
MsG0580027276.01 | MsG0880044058.01 | -0.818535 | 1.863445e-52 | 1.398624e-49 |
MsG0580028302.01 | MsG0880044058.01 | 0.833085 | 6.528380e-56 | 7.439856e-53 |
MsG0580029751.01 | MsG0880044058.01 | -0.821032 | 5.009307e-53 | 4.029974e-50 |
MsG0280007505.01 | MsG0880044058.01 | 0.804891 | 1.737369e-49 | 9.064307e-47 |
MsG0280008328.01 | MsG0880044058.01 | 0.813199 | 2.889018e-51 | 1.874291e-48 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880044058.01.T01 | MTR_8g446830 | 95.349 | 172 | 8 | 0 | 1 | 172 | 24 | 195 | 6.61e-121 | 339 |
MsG0880044058.01.T01 | MTR_7g014880 | 49.708 | 171 | 73 | 5 | 1 | 162 | 25 | 191 | 3.95e-49 | 157 |
MsG0880044058.01.T01 | MTR_8g085560 | 41.916 | 167 | 91 | 4 | 2 | 165 | 27 | 190 | 3.59e-39 | 132 |
MsG0880044058.01.T01 | MTR_3g083760 | 52.252 | 111 | 52 | 1 | 2 | 112 | 22 | 131 | 8.82e-36 | 122 |
MsG0880044058.01.T01 | MTR_3g083760 | 45.312 | 128 | 52 | 2 | 2 | 112 | 22 | 148 | 3.28e-31 | 112 |
MsG0880044058.01.T01 | MTR_6g084630 | 36.752 | 117 | 66 | 5 | 22 | 133 | 1 | 114 | 7.08e-13 | 62.8 |
MsG0880044058.01.T01 | MTR_3g085210 | 34.343 | 99 | 62 | 2 | 10 | 105 | 31 | 129 | 1.33e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880044058.01.T01 | AT2G44300 | 50.568 | 176 | 71 | 3 | 3 | 163 | 27 | 201 | 9.16e-58 | 180 |
MsG0880044058.01.T01 | AT2G44290 | 46.893 | 177 | 78 | 3 | 2 | 163 | 27 | 202 | 3.95e-54 | 171 |
MsG0880044058.01.T01 | AT1G55260 | 35.583 | 163 | 101 | 4 | 2 | 163 | 67 | 226 | 1.17e-30 | 111 |
MsG0880044058.01.T01 | AT1G55260 | 36.810 | 163 | 96 | 5 | 2 | 163 | 67 | 223 | 1.86e-30 | 110 |
MsG0880044058.01.T01 | AT3G58550 | 40.800 | 125 | 71 | 2 | 2 | 124 | 29 | 152 | 5.37e-27 | 100 |
MsG0880044058.01.T01 | AT1G73890 | 40.506 | 79 | 46 | 1 | 11 | 89 | 30 | 107 | 8.66e-13 | 63.9 |
MsG0880044058.01.T01 | AT1G03103 | 30.065 | 153 | 94 | 4 | 11 | 159 | 25 | 168 | 2.60e-11 | 59.3 |
Find 39 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACTTGAGCCTCAGCTGATT+TGG | 0.222383 | 8:-34926422 | None:intergenic |
TGTGCATTCTTGTTTGTCTT+TGG | 0.244832 | 8:-34925937 | None:intergenic |
ACCAGGACATTTAGAGATAT+TGG | 0.273723 | 8:-34926174 | None:intergenic |
AGATCGTAATGATCCTGATT+TGG | 0.316207 | 8:+34926091 | MsG0880044058.01.T01:CDS |
AGAAAAGAGAAGAGATTGAT+TGG | 0.339081 | 8:+34926978 | MsG0880044058.01.T01:CDS |
ACTTGAGCCTCAGCTGATTT+GGG | 0.345043 | 8:-34926421 | None:intergenic |
AAAAGTTATCACAACTAGTA+TGG | 0.392346 | 8:+34927180 | MsG0880044058.01.T01:three_prime_UTR |
GATCGTAATGATCCTGATTT+GGG | 0.411730 | 8:+34926092 | MsG0880044058.01.T01:CDS |
TTACAAAATGAAAACTTCAA+TGG | 0.417535 | 8:-34927159 | None:intergenic |
TATAGTTATTAATGTTACTT+TGG | 0.452178 | 8:+34926118 | MsG0880044058.01.T01:CDS |
TCTGTGTAGTACTTCTTGCT+TGG | 0.453220 | 8:-34926941 | None:intergenic |
TCATGTCTCCCCTATGTTGA+AGG | 0.464755 | 8:+34925981 | MsG0880044058.01.T01:CDS |
GAATGCACAGCTCAATTGAC+AGG | 0.464888 | 8:+34925951 | MsG0880044058.01.T01:CDS |
GCCAATATCTCTAAATGTCC+TGG | 0.474666 | 8:+34926173 | MsG0880044058.01.T01:CDS |
TTTCCTTCACCTTCAACATA+GGG | 0.478002 | 8:-34925990 | None:intergenic |
GGACATTTAGAGATATTGGC+AGG | 0.478911 | 8:-34926170 | None:intergenic |
ATAACTATACCACCCAAATC+AGG | 0.482338 | 8:-34926104 | None:intergenic |
AGTGCTGCACCTAGTCCATC+AGG | 0.483330 | 8:+34926484 | MsG0880044058.01.T01:CDS |
AGCACTTGGACTAATATTGC+TGG | 0.486730 | 8:-34926467 | None:intergenic |
TGAATTAGAGCTGCTGCACA+TGG | 0.506732 | 8:+34926396 | MsG0880044058.01.T01:intron |
GAAAAGAGAACAATCTTCAA+GGG | 0.509786 | 8:-34927115 | None:intergenic |
TTGAGACCATCACAACAATC+TGG | 0.516643 | 8:-34926023 | None:intergenic |
GCAGGGGCATTACAAACTGT+TGG | 0.517485 | 8:-34926152 | None:intergenic |
AGAAAAGAGAACAATCTTCA+AGG | 0.521093 | 8:-34927116 | None:intergenic |
CCATCACAACAATCTGGTGC+TGG | 0.553657 | 8:-34926017 | None:intergenic |
AGTTTCATACCTGATGGACT+AGG | 0.561670 | 8:-34926493 | None:intergenic |
CTCCCCTATGTTGAAGGTGA+AGG | 0.561730 | 8:+34925987 | MsG0880044058.01.T01:CDS |
CCAGCACCAGATTGTTGTGA+TGG | 0.573645 | 8:+34926017 | MsG0880044058.01.T01:CDS |
ACATTTAGAGATATTGGCAG+GGG | 0.578847 | 8:-34926168 | None:intergenic |
GATGGACTAGGTGCAGCACT+TGG | 0.582516 | 8:-34926481 | None:intergenic |
TCATGGACACTTGTTTAGTG+AGG | 0.590872 | 8:+34927233 | MsG0880044058.01.T01:three_prime_UTR |
ATGATAATCAATATTCACAT+TGG | 0.591247 | 8:-34927077 | None:intergenic |
GACATTTAGAGATATTGGCA+GGG | 0.601482 | 8:-34926169 | None:intergenic |
TTCCTTCACCTTCAACATAG+GGG | 0.609504 | 8:-34925989 | None:intergenic |
AAAAGAGAACAATCTTCAAG+GGG | 0.629231 | 8:-34927114 | None:intergenic |
CGTAATGATCCTGATTTGGG+TGG | 0.647273 | 8:+34926095 | MsG0880044058.01.T01:CDS |
CATGGATCCCAAATCAGCTG+AGG | 0.670451 | 8:+34926414 | MsG0880044058.01.T01:CDS |
AATGCACAGCTCAATTGACA+GGG | 0.698246 | 8:+34925952 | MsG0880044058.01.T01:CDS |
AAAGAGAACAATCTTCAAGG+GGG | 0.729158 | 8:-34927113 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATATTCAATAATTTTTAG+AGG | + | Chr8:34926789-34926808 | MsG0880044058.01.T01:intron | 10.0% |
!!! | TTTGTTTTTGTTTTTTAAAA+TGG | + | Chr8:34927209-34927228 | MsG0880044058.01.T01:three_prime_UTR | 10.0% |
!! | AATGACAAATAATAAAATTG+TGG | + | Chr8:34926841-34926860 | MsG0880044058.01.T01:intron | 15.0% |
!! | ATGACAAATAATAAAATTGT+GGG | + | Chr8:34926842-34926861 | MsG0880044058.01.T01:intron | 15.0% |
!! | TAAATTATTGCATATTTGTT+TGG | - | Chr8:34926732-34926751 | None:intergenic | 15.0% |
!! | TATGTATATATAAATTGTAG+AGG | - | Chr8:34926594-34926613 | None:intergenic | 15.0% |
!!! | GTTTTTTATCAATTAAACAA+TGG | + | Chr8:34926442-34926461 | MsG0880044058.01.T01:CDS | 15.0% |
!!! | TATAGTTATTAATGTTACTT+TGG | + | Chr8:34926118-34926137 | MsG0880044058.01.T01:CDS | 15.0% |
!!! | TTATTTCTCAATAATTTTAG+AGG | + | Chr8:34926749-34926768 | MsG0880044058.01.T01:intron | 15.0% |
!! | AAATGAGTCAAATTGATTAT+GGG | + | Chr8:34926240-34926259 | MsG0880044058.01.T01:intron | 20.0% |
!! | AACAATACATAATATATGCA+AGG | - | Chr8:34926299-34926318 | None:intergenic | 20.0% |
!! | ATGATAATCAATATTCACAT+TGG | - | Chr8:34927080-34927099 | None:intergenic | 20.0% |
!! | ATTAGCAAAAAATCACAATT+AGG | - | Chr8:34926878-34926897 | None:intergenic | 20.0% |
!! | TGACAAATAATAAAATTGTG+GGG | + | Chr8:34926843-34926862 | MsG0880044058.01.T01:intron | 20.0% |
!! | TTACAAAATGAAAACTTCAA+TGG | - | Chr8:34927162-34927181 | None:intergenic | 20.0% |
!! | TTAGCAAAAAATCACAATTA+GGG | - | Chr8:34926877-34926896 | None:intergenic | 20.0% |
!!! | GTTTTAGTTTGGTTTTTATT+TGG | + | Chr8:34927023-34927042 | MsG0880044058.01.T01:CDS | 20.0% |
!!! | TTGTTTTTTAAAATGGTTCA+TGG | + | Chr8:34927216-34927235 | MsG0880044058.01.T01:three_prime_UTR | 20.0% |
! | AAAAGTTATCACAACTAGTA+TGG | + | Chr8:34927180-34927199 | MsG0880044058.01.T01:three_prime_UTR | 25.0% |
! | GAAATGAGTCAAATTGATTA+TGG | + | Chr8:34926239-34926258 | MsG0880044058.01.T01:intron | 25.0% |
! | GACAAATAATAAAATTGTGG+GGG | + | Chr8:34926844-34926863 | MsG0880044058.01.T01:intron | 25.0% |
! | GGGATATAACATAACATTAA+AGG | + | Chr8:34926355-34926374 | MsG0880044058.01.T01:intron | 25.0% |
! | TAACATAGAAAAACTTTACC+AGG | - | Chr8:34926194-34926213 | None:intergenic | 25.0% |
!!! | TGGGATTTTTTTTTAGTAGT+CGG | + | Chr8:34926259-34926278 | MsG0880044058.01.T01:intron | 25.0% |
AAAAGAGAACAATCTTCAAG+GGG | - | Chr8:34927117-34927136 | None:intergenic | 30.0% | |
AGAAAAGAGAACAATCTTCA+AGG | - | Chr8:34927119-34927138 | None:intergenic | 30.0% | |
AGAAAAGAGAAGAGATTGAT+TGG | + | Chr8:34926978-34926997 | MsG0880044058.01.T01:CDS | 30.0% | |
GAAAAGAGAACAATCTTCAA+GGG | - | Chr8:34927118-34927137 | None:intergenic | 30.0% | |
! | GTTTAGACGTTTTGTCTATT+GGG | + | Chr8:34927000-34927019 | MsG0880044058.01.T01:CDS | 30.0% |
! | TGAAGATTGTTCTCTTTTCT+TGG | + | Chr8:34927119-34927138 | MsG0880044058.01.T01:three_prime_UTR | 30.0% |
! | TTTAGACGTTTTGTCTATTG+GGG | + | Chr8:34927001-34927020 | MsG0880044058.01.T01:CDS | 30.0% |
!! | TTTTTATTTGGTTATGCTGC+TGG | + | Chr8:34927035-34927054 | MsG0880044058.01.T01:CDS | 30.0% |
!!! | GGATTTTTTTTTAGTAGTCG+GGG | + | Chr8:34926261-34926280 | MsG0880044058.01.T01:intron | 30.0% |
!!! | GGGATTTTTTTTTAGTAGTC+GGG | + | Chr8:34926260-34926279 | MsG0880044058.01.T01:intron | 30.0% |
AAAGAGAACAATCTTCAAGG+GGG | - | Chr8:34927116-34927135 | None:intergenic | 35.0% | |
ACATTTAGAGATATTGGCAG+GGG | - | Chr8:34926171-34926190 | None:intergenic | 35.0% | |
ACCAGGACATTTAGAGATAT+TGG | - | Chr8:34926177-34926196 | None:intergenic | 35.0% | |
AGATCGTAATGATCCTGATT+TGG | + | Chr8:34926091-34926110 | MsG0880044058.01.T01:CDS | 35.0% | |
ATAACTATACCACCCAAATC+AGG | - | Chr8:34926107-34926126 | None:intergenic | 35.0% | |
GACATTTAGAGATATTGGCA+GGG | - | Chr8:34926172-34926191 | None:intergenic | 35.0% | |
GATCGTAATGATCCTGATTT+GGG | + | Chr8:34926092-34926111 | MsG0880044058.01.T01:CDS | 35.0% | |
TTTCCTTCACCTTCAACATA+GGG | - | Chr8:34925993-34926012 | None:intergenic | 35.0% | |
! | AGAGTGTCATTCATGTTATG+TGG | + | Chr8:34926899-34926918 | MsG0880044058.01.T01:intron | 35.0% |
! | GGTTTAGACGTTTTGTCTAT+TGG | + | Chr8:34926999-34927018 | MsG0880044058.01.T01:CDS | 35.0% |
! | TGTGCATTCTTGTTTGTCTT+TGG | - | Chr8:34925940-34925959 | None:intergenic | 35.0% |
! | TTTTCCTTCACCTTCAACAT+AGG | - | Chr8:34925994-34926013 | None:intergenic | 35.0% |
!!! | TGTCTATTGGGGTTTTAGTT+TGG | + | Chr8:34927012-34927031 | MsG0880044058.01.T01:CDS | 35.0% |
AAGCGAAGTTTCATACCTGA+TGG | - | Chr8:34926502-34926521 | None:intergenic | 40.0% | |
AAGCTCAAGAGAACTGATCA+TGG | + | Chr8:34926334-34926353 | MsG0880044058.01.T01:intron | 40.0% | |
AATGCACAGCTCAATTGACA+GGG | + | Chr8:34925952-34925971 | MsG0880044058.01.T01:CDS | 40.0% | |
AGCACTTGGACTAATATTGC+TGG | - | Chr8:34926470-34926489 | None:intergenic | 40.0% | |
AGCTCAAGAGAACTGATCAT+GGG | + | Chr8:34926335-34926354 | MsG0880044058.01.T01:intron | 40.0% | |
GCCAATATCTCTAAATGTCC+TGG | + | Chr8:34926173-34926192 | MsG0880044058.01.T01:CDS | 40.0% | |
GGACATTTAGAGATATTGGC+AGG | - | Chr8:34926173-34926192 | None:intergenic | 40.0% | |
TCATGGACACTTGTTTAGTG+AGG | + | Chr8:34927233-34927252 | MsG0880044058.01.T01:three_prime_UTR | 40.0% | |
TCATGTTATGTGGCTGTAGA+TGG | + | Chr8:34926909-34926928 | MsG0880044058.01.T01:intron | 40.0% | |
TCTCTTGAGCTTAACTCAGT+TGG | - | Chr8:34926326-34926345 | None:intergenic | 40.0% | |
TCTGTGTAGTACTTCTTGCT+TGG | - | Chr8:34926944-34926963 | None:intergenic | 40.0% | |
TTCCTTCACCTTCAACATAG+GGG | - | Chr8:34925992-34926011 | None:intergenic | 40.0% | |
TTGAGACCATCACAACAATC+TGG | - | Chr8:34926026-34926045 | None:intergenic | 40.0% | |
!! | AGTTTCATACCTGATGGACT+AGG | - | Chr8:34926496-34926515 | None:intergenic | 40.0% |
AACTTGAGCCTCAGCTGATT+TGG | - | Chr8:34926425-34926444 | None:intergenic | 45.0% | |
GAATGCACAGCTCAATTGAC+AGG | + | Chr8:34925951-34925970 | MsG0880044058.01.T01:CDS | 45.0% | |
TAGTAGTCGGGGTTTGAACT+CGG | + | Chr8:34926272-34926291 | MsG0880044058.01.T01:intron | 45.0% | |
TCATGTCTCCCCTATGTTGA+AGG | + | Chr8:34925981-34926000 | MsG0880044058.01.T01:CDS | 45.0% | |
TGAATTAGAGCTGCTGCACA+TGG | + | Chr8:34926396-34926415 | MsG0880044058.01.T01:intron | 45.0% | |
! | ACTTGAGCCTCAGCTGATTT+GGG | - | Chr8:34926424-34926443 | None:intergenic | 45.0% |
!! | CGTAATGATCCTGATTTGGG+TGG | + | Chr8:34926095-34926114 | MsG0880044058.01.T01:CDS | 45.0% |
!! | TCTTCAAGGGGGAAAGTGTT+TGG | - | Chr8:34927105-34927124 | None:intergenic | 45.0% |
!!! | ATATAAAACAATTTTATAAT+AGG | - | Chr8:34926632-34926651 | None:intergenic | 5.0% |
CATGGATCCCAAATCAGCTG+AGG | + | Chr8:34926414-34926433 | MsG0880044058.01.T01:CDS | 50.0% | |
CCAGCACCAGATTGTTGTGA+TGG | + | Chr8:34926017-34926036 | MsG0880044058.01.T01:CDS | 50.0% | |
CCATCACAACAATCTGGTGC+TGG | - | Chr8:34926020-34926039 | None:intergenic | 50.0% | |
CTCCCCTATGTTGAAGGTGA+AGG | + | Chr8:34925987-34926006 | MsG0880044058.01.T01:CDS | 50.0% | |
!! | GCAGGGGCATTACAAACTGT+TGG | - | Chr8:34926155-34926174 | None:intergenic | 50.0% |
AGTGCTGCACCTAGTCCATC+AGG | + | Chr8:34926484-34926503 | MsG0880044058.01.T01:CDS | 55.0% | |
!! | GATGGACTAGGTGCAGCACT+TGG | - | Chr8:34926484-34926503 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 34925924 | 34927271 | 34925924 | ID=MsG0880044058.01;Name=MsG0880044058.01 |
Chr8 | mRNA | 34925924 | 34927271 | 34925924 | ID=MsG0880044058.01.T01;Parent=MsG0880044058.01;Name=MsG0880044058.01.T01;_AED=0.30;_eAED=0.30;_QI=0|0.5|0.33|1|1|1|3|198|172 |
Chr8 | exon | 34926928 | 34927271 | 34926928 | ID=MsG0880044058.01.T01:exon:3605;Parent=MsG0880044058.01.T01 |
Chr8 | exon | 34926404 | 34926505 | 34926404 | ID=MsG0880044058.01.T01:exon:3604;Parent=MsG0880044058.01.T01 |
Chr8 | exon | 34925924 | 34926194 | 34925924 | ID=MsG0880044058.01.T01:exon:3603;Parent=MsG0880044058.01.T01 |
Chr8 | CDS | 34925924 | 34926194 | 34925924 | ID=MsG0880044058.01.T01:cds;Parent=MsG0880044058.01.T01 |
Chr8 | CDS | 34926404 | 34926505 | 34926404 | ID=MsG0880044058.01.T01:cds;Parent=MsG0880044058.01.T01 |
Chr8 | CDS | 34926928 | 34927073 | 34926928 | ID=MsG0880044058.01.T01:cds;Parent=MsG0880044058.01.T01 |
Chr8 | three_prime_UTR | 34927074 | 34927271 | 34927074 | ID=MsG0880044058.01.T01:three_prime_utr;Parent=MsG0880044058.01.T01 |
Gene Sequence |
Protein sequence |