Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044952.01.T01 | XP_004493704.1 | 68.912 | 193 | 57 | 3 | 125 | 316 | 123 | 313 | 1.85E-89 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044952.01.T01 | A2WX30 | 46.226 | 106 | 56 | 1 | 13 | 118 | 21 | 125 | 7.68E-29 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044952.01.T01 | A0A1S2XS58 | 68.912 | 193 | 57 | 3 | 125 | 316 | 123 | 313 | 8.84e-90 | 283 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0880044952.01 | MsG0880047472.01 | 0.811970 | 5.363043e-51 | 3.366973e-48 |
| MsG0180004099.01 | MsG0880044952.01 | 0.824824 | 6.546474e-54 | 5.863771e-51 |
| MsG0180004389.01 | MsG0880044952.01 | 0.800478 | 1.414716e-48 | 6.593722e-46 |
| MsG0780040841.01 | MsG0880044952.01 | 0.811256 | 7.666754e-51 | 4.723046e-48 |
| MsG0880041896.01 | MsG0880044952.01 | 0.801295 | 9.630122e-49 | 4.582529e-46 |
| MsG0880042311.01 | MsG0880044952.01 | 0.809733 | 1.635469e-50 | 9.678255e-48 |
| MsG0280011003.01 | MsG0880044952.01 | 0.804548 | 2.049116e-49 | 1.059499e-46 |
| MsG0280011014.01 | MsG0880044952.01 | 0.808499 | 3.006034e-50 | 1.721543e-47 |
| MsG0380013834.01 | MsG0880044952.01 | 0.804352 | 2.250732e-49 | 1.157944e-46 |
| MsG0680034853.01 | MsG0880044952.01 | 0.804313 | 2.294063e-49 | 1.179014e-46 |
| MsG0480021465.01 | MsG0880044952.01 | 0.801073 | 1.069544e-48 | 5.061090e-46 |
| MsG0480022164.01 | MsG0880044952.01 | 0.804794 | 1.820647e-49 | 9.474291e-47 |
| MsG0380015168.01 | MsG0880044952.01 | 0.822768 | 1.984970e-53 | 1.677209e-50 |
| MsG0380015805.01 | MsG0880044952.01 | 0.807058 | 6.084652e-50 | 3.355702e-47 |
| MsG0480018163.01 | MsG0880044952.01 | 0.802015 | 6.855346e-49 | 3.322071e-46 |
| MsG0580026307.01 | MsG0880044952.01 | 0.806630 | 7.491601e-50 | 4.085975e-47 |
| MsG0580029640.01 | MsG0880044952.01 | 0.806873 | 6.658789e-50 | 3.654797e-47 |
| MsG0280007955.01 | MsG0880044952.01 | 0.800712 | 1.267086e-48 | 5.940773e-46 |
| MsG0780039697.01 | MsG0880044952.01 | 0.800935 | 1.141111e-48 | 5.380930e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044952.01.T01 | MTR_3g084690 | 40.310 | 258 | 145 | 6 | 63 | 316 | 59 | 311 | 3.29e-58 | 192 |
| MsG0880044952.01.T01 | MTR_1g016400 | 47.179 | 195 | 97 | 5 | 124 | 316 | 122 | 312 | 3.56e-50 | 171 |
| MsG0880044952.01.T01 | MTR_1g017120 | 46.667 | 195 | 98 | 5 | 124 | 316 | 122 | 312 | 5.80e-50 | 171 |
| MsG0880044952.01.T01 | MTR_2g450270 | 46.597 | 191 | 97 | 5 | 127 | 316 | 101 | 287 | 2.51e-49 | 168 |
| MsG0880044952.01.T01 | MTR_6g034615 | 51.634 | 153 | 72 | 2 | 165 | 316 | 40 | 191 | 1.00e-48 | 162 |
| MsG0880044952.01.T01 | MTR_5g081870 | 50.833 | 120 | 56 | 2 | 1 | 120 | 1 | 117 | 1.48e-35 | 135 |
| MsG0880044952.01.T01 | MTR_3g070140 | 50.000 | 114 | 55 | 2 | 8 | 120 | 9 | 121 | 6.36e-31 | 122 |
| MsG0880044952.01.T01 | MTR_6g060160 | 43.089 | 123 | 58 | 4 | 125 | 244 | 34 | 147 | 1.68e-24 | 97.4 |
| MsG0880044952.01.T01 | MTR_8g080950 | 60.656 | 61 | 24 | 0 | 174 | 234 | 16 | 76 | 1.17e-19 | 83.2 |
| MsG0880044952.01.T01 | MTR_1g088950 | 39.316 | 117 | 70 | 1 | 2 | 118 | 3 | 118 | 6.39e-19 | 87.8 |
| MsG0880044952.01.T01 | MTR_8g063930 | 70.588 | 51 | 14 | 1 | 111 | 160 | 344 | 394 | 7.33e-16 | 77.8 |
| MsG0880044952.01.T01 | MTR_7g083610 | 35.577 | 104 | 66 | 1 | 15 | 118 | 6 | 108 | 6.06e-15 | 75.9 |
| MsG0880044952.01.T01 | MTR_8g098695 | 35.577 | 104 | 66 | 1 | 15 | 118 | 9 | 111 | 6.18e-15 | 75.9 |
| MsG0880044952.01.T01 | MTR_4g091290 | 33.945 | 109 | 71 | 1 | 10 | 118 | 23 | 130 | 1.26e-14 | 74.7 |
| MsG0880044952.01.T01 | MTR_3g100860 | 30.693 | 101 | 69 | 1 | 18 | 118 | 26 | 125 | 6.71e-11 | 63.5 |
| MsG0880044952.01.T01 | MTR_5g065490 | 30.189 | 106 | 73 | 1 | 13 | 118 | 51 | 155 | 7.35e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044952.01.T01 | AT2G39940 | 46.281 | 121 | 61 | 2 | 1 | 118 | 1 | 120 | 2.97e-29 | 117 |
| MsG0880044952.01.T01 | AT3G62980 | 37.500 | 112 | 69 | 1 | 7 | 118 | 3 | 113 | 3.73e-16 | 79.3 |
| MsG0880044952.01.T01 | AT1G12820 | 38.462 | 104 | 63 | 1 | 15 | 118 | 6 | 108 | 8.10e-16 | 78.6 |
| MsG0880044952.01.T01 | AT3G26810 | 37.500 | 104 | 64 | 1 | 15 | 118 | 6 | 108 | 2.81e-15 | 76.6 |
| MsG0880044952.01.T01 | AT4G03190 | 35.644 | 101 | 64 | 1 | 18 | 118 | 10 | 109 | 3.70e-15 | 76.3 |
| MsG0880044952.01.T01 | AT5G49980 | 33.019 | 106 | 70 | 1 | 13 | 118 | 54 | 158 | 1.86e-13 | 71.2 |
| MsG0880044952.01.T01 | AT4G24390 | 32.075 | 106 | 71 | 1 | 13 | 118 | 54 | 158 | 2.81e-12 | 67.8 |
| MsG0880044952.01.T01 | AT4G24390 | 32.075 | 106 | 71 | 1 | 13 | 118 | 54 | 158 | 2.81e-12 | 67.8 |
Find 60 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCTCCTTAAATTCTTTC+AGG | 0.165657 | 8:-51949181 | None:intergenic |
| TATACACCTGAAAGAATTTA+AGG | 0.170944 | 8:+51949175 | MsG0880044952.01.T01:CDS |
| GGCAACCAAGTTTGTGTTAC+TGG | 0.245852 | 8:-51949802 | None:intergenic |
| GAAATCACGTCTCTGTCTTT+AGG | 0.247533 | 8:-51948740 | None:intergenic |
| CTATTTGTCTGGTGAGATTA+AGG | 0.253435 | 8:+51950268 | MsG0880044952.01.T01:CDS |
| CAGAGACGTGATTTCTTCTA+AGG | 0.279842 | 8:+51948748 | MsG0880044952.01.T01:CDS |
| ATAATATACGGCCTAAAATA+AGG | 0.290169 | 8:-51950117 | None:intergenic |
| AGCTTCAATGATTGAAGTTT+AGG | 0.292789 | 8:-51949044 | None:intergenic |
| AGATCTAAATCAACATTTAC+AGG | 0.325045 | 8:-51949850 | None:intergenic |
| AAATCACGTCTCTGTCTTTA+GGG | 0.338434 | 8:-51948739 | None:intergenic |
| GGAAGTGTGTATTTACTGTA+TGG | 0.356795 | 8:+51950289 | MsG0880044952.01.T01:CDS |
| TTCTTCCAAACACCTTCCTT+TGG | 0.358012 | 8:-51949979 | None:intergenic |
| GAACCCTGCCTTGCTTCTTT+CGG | 0.358559 | 8:-51950183 | None:intergenic |
| ATGTAAGGAATGGAGGGATA+TGG | 0.368618 | 8:+51948947 | MsG0880044952.01.T01:CDS |
| GGAAAAGGATTGTGAAAATA+AGG | 0.368784 | 8:+51950340 | MsG0880044952.01.T01:CDS |
| AGTTGCTCTGGTAACGGAAT+TGG | 0.369807 | 8:-51949823 | None:intergenic |
| ATGAATCAAGTTTGTGGAAA+AGG | 0.371815 | 8:+51950325 | MsG0880044952.01.T01:CDS |
| AAATTGTATGCCATAATATA+CGG | 0.380420 | 8:-51950129 | None:intergenic |
| CCACAAACTTGATTCATACT+TGG | 0.397200 | 8:-51950319 | None:intergenic |
| ATGATAACTCTGATGAGGTT+TGG | 0.397211 | 8:+51949926 | MsG0880044952.01.T01:CDS |
| CCAAGTATGAATCAAGTTTG+TGG | 0.409787 | 8:+51950319 | MsG0880044952.01.T01:CDS |
| TTCAACTCAATCTATTTGTC+TGG | 0.423574 | 8:+51950257 | MsG0880044952.01.T01:CDS |
| TTTACAGGTTGCAGTTGCTC+TGG | 0.443605 | 8:-51949835 | None:intergenic |
| TTCAATCATTGAAGCTCAAA+GGG | 0.450463 | 8:+51949051 | MsG0880044952.01.T01:CDS |
| CTTTCAGCAATGCAGAATGA+AGG | 0.453027 | 8:+51948650 | None:intergenic |
| GGAGTGGAGGCGTAAATTAG+AGG | 0.457653 | 8:-51948999 | None:intergenic |
| ATGTACCAAAGGAAGGTGTT+TGG | 0.467393 | 8:+51949974 | MsG0880044952.01.T01:CDS |
| AAATGATATAAGTTGTTGGA+TGG | 0.489617 | 8:+51950206 | MsG0880044952.01.T01:CDS |
| CTTCAATCATTGAAGCTCAA+AGG | 0.493223 | 8:+51949050 | MsG0880044952.01.T01:CDS |
| GTTCAAATGATATAAGTTGT+TGG | 0.499851 | 8:+51950202 | MsG0880044952.01.T01:CDS |
| GAAGTGTGTATTTACTGTAT+GGG | 0.512164 | 8:+51950290 | MsG0880044952.01.T01:CDS |
| GGTGCCGAAAGAAGCAAGGC+AGG | 0.514747 | 8:+51950179 | MsG0880044952.01.T01:CDS |
| GCAACCAAGTTTGTGTTACT+GGG | 0.521291 | 8:-51949801 | None:intergenic |
| GCAACCCAGTAACACAAACT+TGG | 0.525609 | 8:+51949797 | MsG0880044952.01.T01:intron |
| GGGGATGTTATGTTTCTCCA+TGG | 0.529695 | 8:+51949114 | MsG0880044952.01.T01:CDS |
| AAACCACACTTTGCTGCTCT+AGG | 0.532097 | 8:-51949077 | None:intergenic |
| ACATAACATCCCCAATTCTC+CGG | 0.534919 | 8:-51949104 | None:intergenic |
| ATCTAACAAACAGACATGTA+AGG | 0.548888 | 8:+51948932 | MsG0880044952.01.T01:intron |
| ACAAACAGACATGTAAGGAA+TGG | 0.562926 | 8:+51948937 | MsG0880044952.01.T01:intron |
| GGTTGCAGTTGCTCTGGTAA+CGG | 0.566310 | 8:-51949829 | None:intergenic |
| AACAGACATGTAAGGAATGG+AGG | 0.568470 | 8:+51948940 | MsG0880044952.01.T01:intron |
| ACAATCTGAGATGAAGTGTA+CGG | 0.590420 | 8:-51950070 | None:intergenic |
| ACAGACATGTAAGGAATGGA+GGG | 0.601396 | 8:+51948941 | MsG0880044952.01.T01:intron |
| TCTAATTTACGCCTCCACTC+CGG | 0.602900 | 8:+51949001 | MsG0880044952.01.T01:CDS |
| TTTAATTGGGGTAAAGTCAG+CGG | 0.605523 | 8:+51950234 | MsG0880044952.01.T01:CDS |
| TAAGGATGAGAGCAATGTGA+GGG | 0.609555 | 8:+51950358 | MsG0880044952.01.T01:CDS |
| ATGGAATGACAACAATGTTG+AGG | 0.613133 | 8:+51950157 | MsG0880044952.01.T01:CDS |
| TGGAATGACAACAATGTTGA+GGG | 0.614151 | 8:+51950158 | MsG0880044952.01.T01:CDS |
| TTGCAACGTCTATGTACCAA+AGG | 0.622700 | 8:+51949963 | MsG0880044952.01.T01:CDS |
| AACGTCTATGTACCAAAGGA+AGG | 0.635667 | 8:+51949967 | MsG0880044952.01.T01:CDS |
| ATAAGGATGAGAGCAATGTG+AGG | 0.642392 | 8:+51950357 | MsG0880044952.01.T01:CDS |
| TGAGGGTGCCGAAAGAAGCA+AGG | 0.642999 | 8:+51950175 | MsG0880044952.01.T01:CDS |
| ACGGCTCCATTGTGTAACAC+TGG | 0.644253 | 8:-51950051 | None:intergenic |
| TGATGACAAACATGATTGCA+TGG | 0.644610 | 8:+51949891 | MsG0880044952.01.T01:CDS |
| GACATGCCAGTGTTACACAA+TGG | 0.654008 | 8:+51950045 | MsG0880044952.01.T01:CDS |
| GTGCCGAAAGAAGCAAGGCA+GGG | 0.666834 | 8:+51950180 | MsG0880044952.01.T01:CDS |
| AAACCTAGAGCAGCAAAGTG+TGG | 0.670165 | 8:+51949074 | MsG0880044952.01.T01:CDS |
| TGATGAAGCTCTGAAACGCA+TGG | 0.679400 | 8:+51948700 | MsG0880044952.01.T01:CDS |
| GGGATATGGATTCAGATACA+CGG | 0.707220 | 8:+51948961 | MsG0880044952.01.T01:CDS |
| TGAAGCTCTGAAACGCATGG+TGG | 0.761071 | 8:+51948703 | MsG0880044952.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAACTTATGTATTAAATA+TGG | + | Chr8:51949316-51949335 | MsG0880044952.01.T01:intron | 10.0% |
| !! | AAATTGTATGCCATAATATA+CGG | - | Chr8:51950132-51950151 | None:intergenic | 20.0% |
| !! | ATTGCGTAATATGAAATAAA+AGG | + | Chr8:51949485-51949504 | MsG0880044952.01.T01:intron | 20.0% |
| !! | GATAAGTATATTGAAATTGA+AGG | - | Chr8:51949617-51949636 | None:intergenic | 20.0% |
| !! | TGAAATAAAAGGAAATTTGA+TGG | + | Chr8:51949496-51949515 | MsG0880044952.01.T01:intron | 20.0% |
| !!! | AAAAAGTTAGTCCTTATTTT+AGG | + | Chr8:51950106-51950125 | MsG0880044952.01.T01:CDS | 20.0% |
| !!! | CTAACTTATTTTGTAACTAA+TGG | + | Chr8:51948901-51948920 | MsG0880044952.01.T01:intron | 20.0% |
| !!! | TGTATTAAATATGGCTTTAT+TGG | + | Chr8:51949325-51949344 | MsG0880044952.01.T01:intron | 20.0% |
| !!! | TTGGATGGAAATTTTTAATT+GGG | + | Chr8:51950221-51950240 | MsG0880044952.01.T01:CDS | 20.0% |
| ! | AAACAATTGGAATTCAAAGT+TGG | - | Chr8:51949773-51949792 | None:intergenic | 25.0% |
| ! | AAATGATATAAGTTGTTGGA+TGG | + | Chr8:51950206-51950225 | MsG0880044952.01.T01:CDS | 25.0% |
| ! | AGATCTAAATCAACATTTAC+AGG | - | Chr8:51949853-51949872 | None:intergenic | 25.0% |
| ! | ATAATATACGGCCTAAAATA+AGG | - | Chr8:51950120-51950139 | None:intergenic | 25.0% |
| ! | ATTTCTAAGTTAGAAACAAC+CGG | - | Chr8:51949407-51949426 | None:intergenic | 25.0% |
| ! | CTAATTGATTATGCATAACA+TGG | + | Chr8:51948814-51948833 | MsG0880044952.01.T01:intron | 25.0% |
| ! | CTTAGAAATCTAATGTGATT+TGG | + | Chr8:51949418-51949437 | MsG0880044952.01.T01:intron | 25.0% |
| ! | GTTCAAATGATATAAGTTGT+TGG | + | Chr8:51950202-51950221 | MsG0880044952.01.T01:CDS | 25.0% |
| ! | TATACACCTGAAAGAATTTA+AGG | + | Chr8:51949175-51949194 | MsG0880044952.01.T01:CDS | 25.0% |
| !! | GTTGGATGGAAATTTTTAAT+TGG | + | Chr8:51950220-51950239 | MsG0880044952.01.T01:CDS | 25.0% |
| !! | TTTTGAATCATTCTAATCCA+TGG | - | Chr8:51949134-51949153 | None:intergenic | 25.0% |
| !! | TTTTTATGATAACTCTGATG+AGG | + | Chr8:51949921-51949940 | MsG0880044952.01.T01:CDS | 25.0% |
| !!! | TGGATGGAAATTTTTAATTG+GGG | + | Chr8:51950222-51950241 | MsG0880044952.01.T01:CDS | 25.0% |
| !!! | TTATTTTAGGCCGTATATTA+TGG | + | Chr8:51950119-51950138 | MsG0880044952.01.T01:CDS | 25.0% |
| ACAGAAGCAAGTTGTATTAT+AGG | + | Chr8:51949260-51949279 | MsG0880044952.01.T01:intron | 30.0% | |
| ACTTCTCCTTAAATTCTTTC+AGG | - | Chr8:51949184-51949203 | None:intergenic | 30.0% | |
| AGCTTCAATGATTGAAGTTT+AGG | - | Chr8:51949047-51949066 | None:intergenic | 30.0% | |
| ATCTAACAAACAGACATGTA+AGG | + | Chr8:51948932-51948951 | MsG0880044952.01.T01:intron | 30.0% | |
| ATGAAACTATGAACTTGAGA+AGG | - | Chr8:51949684-51949703 | None:intergenic | 30.0% | |
| ATGAATCAAGTTTGTGGAAA+AGG | + | Chr8:51950325-51950344 | MsG0880044952.01.T01:CDS | 30.0% | |
| GAAGTGTGTATTTACTGTAT+GGG | + | Chr8:51950290-51950309 | MsG0880044952.01.T01:CDS | 30.0% | |
| GGAAAAGGATTGTGAAAATA+AGG | + | Chr8:51950340-51950359 | MsG0880044952.01.T01:CDS | 30.0% | |
| TCCTGTAACAAGTTAAAGTA+AGG | + | Chr8:51949573-51949592 | MsG0880044952.01.T01:intron | 30.0% | |
| TGTATGAGAATGATGATTGA+TGG | + | Chr8:51949458-51949477 | MsG0880044952.01.T01:intron | 30.0% | |
| TTCAACTCAATCTATTTGTC+TGG | + | Chr8:51950257-51950276 | MsG0880044952.01.T01:CDS | 30.0% | |
| TTCAATCATTGAAGCTCAAA+GGG | + | Chr8:51949051-51949070 | MsG0880044952.01.T01:CDS | 30.0% | |
| TTTCTAAGTTAGAAACAACC+GGG | - | Chr8:51949406-51949425 | None:intergenic | 30.0% | |
| ! | AGAAATCTAATGTGATTTGG+TGG | + | Chr8:51949421-51949440 | MsG0880044952.01.T01:intron | 30.0% |
| !! | ATGGCATACAATTTTGAGAA+TGG | + | Chr8:51950138-51950157 | MsG0880044952.01.T01:CDS | 30.0% |
| !! | TCCTTACTTTAACTTGTTAC+AGG | - | Chr8:51949577-51949596 | None:intergenic | 30.0% |
| AAATCACGTCTCTGTCTTTA+GGG | - | Chr8:51948742-51948761 | None:intergenic | 35.0% | |
| ACAAACAGACATGTAAGGAA+TGG | + | Chr8:51948937-51948956 | MsG0880044952.01.T01:intron | 35.0% | |
| AGGTGTTTGGAAGAAAAACA+AGG | + | Chr8:51949987-51950006 | MsG0880044952.01.T01:CDS | 35.0% | |
| ATGAGAATGATGATTGATGG+TGG | + | Chr8:51949461-51949480 | MsG0880044952.01.T01:intron | 35.0% | |
| ATGATAACTCTGATGAGGTT+TGG | + | Chr8:51949926-51949945 | MsG0880044952.01.T01:CDS | 35.0% | |
| ATGGAATGACAACAATGTTG+AGG | + | Chr8:51950157-51950176 | MsG0880044952.01.T01:CDS | 35.0% | |
| CCAAGTATGAATCAAGTTTG+TGG | + | Chr8:51950319-51950338 | MsG0880044952.01.T01:CDS | 35.0% | |
| CCACAAACTTGATTCATACT+TGG | - | Chr8:51950322-51950341 | None:intergenic | 35.0% | |
| CTATTTGTCTGGTGAGATTA+AGG | + | Chr8:51950268-51950287 | MsG0880044952.01.T01:CDS | 35.0% | |
| CTGGGTTGCTAATAAACAAT+TGG | - | Chr8:51949786-51949805 | None:intergenic | 35.0% | |
| CTTCAATCATTGAAGCTCAA+AGG | + | Chr8:51949050-51949069 | MsG0880044952.01.T01:CDS | 35.0% | |
| GGTGTTTGGAAGAAAAACAA+GGG | + | Chr8:51949988-51950007 | MsG0880044952.01.T01:CDS | 35.0% | |
| TCTACTTTCTCTCTATGAGA+TGG | + | Chr8:51949541-51949560 | MsG0880044952.01.T01:intron | 35.0% | |
| TGATGACAAACATGATTGCA+TGG | + | Chr8:51949891-51949910 | MsG0880044952.01.T01:CDS | 35.0% | |
| TGGAATGACAACAATGTTGA+GGG | + | Chr8:51950158-51950177 | MsG0880044952.01.T01:CDS | 35.0% | |
| TTTAATTGGGGTAAAGTCAG+CGG | + | Chr8:51950234-51950253 | MsG0880044952.01.T01:CDS | 35.0% | |
| ! | AACCGTTTCTTGAGTTTTTC+CGG | - | Chr8:51949023-51949042 | None:intergenic | 35.0% |
| ! | ACAATCTGAGATGAAGTGTA+CGG | - | Chr8:51950073-51950092 | None:intergenic | 35.0% |
| ! | GGAAGTGTGTATTTACTGTA+TGG | + | Chr8:51950289-51950308 | MsG0880044952.01.T01:CDS | 35.0% |
| !! | AGAAGGTTTTATGATGAGTG+GGG | - | Chr8:51949667-51949686 | None:intergenic | 35.0% |
| !! | ATCGATGTGAGAAGGTATTA+TGG | - | Chr8:51949731-51949750 | None:intergenic | 35.0% |
| !! | GAGAAGGTTTTATGATGAGT+GGG | - | Chr8:51949668-51949687 | None:intergenic | 35.0% |
| !! | TGAGAAGGTTTTATGATGAG+TGG | - | Chr8:51949669-51949688 | None:intergenic | 35.0% |
| !!! | AGCAAAGTGTGGTTTTATAC+CGG | + | Chr8:51949085-51949104 | MsG0880044952.01.T01:CDS | 35.0% |
| !!! | TGGTTTTATACCGGAGAATT+GGG | + | Chr8:51949094-51949113 | MsG0880044952.01.T01:CDS | 35.0% |
| AACAGACATGTAAGGAATGG+AGG | + | Chr8:51948940-51948959 | MsG0880044952.01.T01:intron | 40.0% | |
| AACGTCTATGTACCAAAGGA+AGG | + | Chr8:51949967-51949986 | MsG0880044952.01.T01:CDS | 40.0% | |
| ACAGACATGTAAGGAATGGA+GGG | + | Chr8:51948941-51948960 | MsG0880044952.01.T01:intron | 40.0% | |
| ACATAACATCCCCAATTCTC+CGG | - | Chr8:51949107-51949126 | None:intergenic | 40.0% | |
| AGTTAGTTACCTGAGAAAGC+AGG | - | Chr8:51948859-51948878 | None:intergenic | 40.0% | |
| ATGTAAGGAATGGAGGGATA+TGG | + | Chr8:51948947-51948966 | MsG0880044952.01.T01:CDS | 40.0% | |
| CAGAGACGTGATTTCTTCTA+AGG | + | Chr8:51948748-51948767 | MsG0880044952.01.T01:CDS | 40.0% | |
| CTCCGGAAAAACTCAAGAAA+CGG | + | Chr8:51949018-51949037 | MsG0880044952.01.T01:CDS | 40.0% | |
| GAAATCACGTCTCTGTCTTT+AGG | - | Chr8:51948743-51948762 | None:intergenic | 40.0% | |
| GGGATATGGATTCAGATACA+CGG | + | Chr8:51948961-51948980 | MsG0880044952.01.T01:CDS | 40.0% | |
| GTGGGGCTTATGATAGAATA+AGG | - | Chr8:51949650-51949669 | None:intergenic | 40.0% | |
| GTTTATCGATCGATGTGAGA+AGG | - | Chr8:51949739-51949758 | None:intergenic | 40.0% | |
| TTCTTCCAAACACCTTCCTT+TGG | - | Chr8:51949982-51950001 | None:intergenic | 40.0% | |
| TTGCAACGTCTATGTACCAA+AGG | + | Chr8:51949963-51949982 | MsG0880044952.01.T01:CDS | 40.0% | |
| ! | CTCAGATTGTTTTCCTTACG+TGG | + | Chr8:51950083-51950102 | MsG0880044952.01.T01:CDS | 40.0% |
| ! | GCAACCAAGTTTGTGTTACT+GGG | - | Chr8:51949804-51949823 | None:intergenic | 40.0% |
| ! | TTTCTTGAGTTTTTCCGGAG+TGG | - | Chr8:51949018-51949037 | None:intergenic | 40.0% |
| !! | ATGTACCAAAGGAAGGTGTT+TGG | + | Chr8:51949974-51949993 | MsG0880044952.01.T01:CDS | 40.0% |
| !! | GGACTAACTTTTTCCACGTA+AGG | - | Chr8:51950099-51950118 | None:intergenic | 40.0% |
| !! | GGTTTTATACCGGAGAATTG+GGG | + | Chr8:51949095-51949114 | MsG0880044952.01.T01:CDS | 40.0% |
| !! | GTGAGAAGGTATTATGGATG+AGG | - | Chr8:51949725-51949744 | None:intergenic | 40.0% |
| !! | TGATTTGGTGGATAGTGAGA+GGG | + | Chr8:51949433-51949452 | MsG0880044952.01.T01:intron | 40.0% |
| !!! | GTGGTTTTATACCGGAGAAT+TGG | + | Chr8:51949093-51949112 | MsG0880044952.01.T01:CDS | 40.0% |
| AAACCACACTTTGCTGCTCT+AGG | - | Chr8:51949080-51949099 | None:intergenic | 45.0% | |
| AAACCTAGAGCAGCAAAGTG+TGG | + | Chr8:51949074-51949093 | MsG0880044952.01.T01:CDS | 45.0% | |
| ACTCAGAAACCTGCTTTCTC+AGG | + | Chr8:51948847-51948866 | MsG0880044952.01.T01:intron | 45.0% | |
| GACACAAATATGTGCTTGCC+CGG | + | Chr8:51949385-51949404 | MsG0880044952.01.T01:intron | 45.0% | |
| GACATGCCAGTGTTACACAA+TGG | + | Chr8:51950045-51950064 | MsG0880044952.01.T01:CDS | 45.0% | |
| GCAACCCAGTAACACAAACT+TGG | + | Chr8:51949797-51949816 | MsG0880044952.01.T01:intron | 45.0% | |
| GGCAACCAAGTTTGTGTTAC+TGG | - | Chr8:51949805-51949824 | None:intergenic | 45.0% | |
| GGGGATGTTATGTTTCTCCA+TGG | + | Chr8:51949114-51949133 | MsG0880044952.01.T01:CDS | 45.0% | |
| GTTGCTGATGAAGAGATAGC+TGG | + | Chr8:51949347-51949366 | MsG0880044952.01.T01:intron | 45.0% | |
| TCTAATTTACGCCTCCACTC+CGG | + | Chr8:51949001-51949020 | MsG0880044952.01.T01:CDS | 45.0% | |
| TGATGAAGAGATAGCTGGTG+AGG | + | Chr8:51949352-51949371 | MsG0880044952.01.T01:intron | 45.0% | |
| TTTACAGGTTGCAGTTGCTC+TGG | - | Chr8:51949838-51949857 | None:intergenic | 45.0% | |
| !! | AGTTGCTCTGGTAACGGAAT+TGG | - | Chr8:51949826-51949845 | None:intergenic | 45.0% |
| !! | GTGATTTGGTGGATAGTGAG+AGG | + | Chr8:51949432-51949451 | MsG0880044952.01.T01:intron | 45.0% |
| !! | TGATGAAGCTCTGAAACGCA+TGG | + | Chr8:51948700-51948719 | MsG0880044952.01.T01:CDS | 45.0% |
| ACGGCTCCATTGTGTAACAC+TGG | - | Chr8:51950054-51950073 | None:intergenic | 50.0% | |
| GAACCCTGCCTTGCTTCTTT+CGG | - | Chr8:51950186-51950205 | None:intergenic | 50.0% | |
| GGTTGCAGTTGCTCTGGTAA+CGG | - | Chr8:51949832-51949851 | None:intergenic | 50.0% | |
| TAGCTGGTGAGGTGTGTATG+TGG | + | Chr8:51949363-51949382 | MsG0880044952.01.T01:intron | 50.0% | |
| ! | CTTGAGTTTTTCCGGAGTGG+AGG | - | Chr8:51949015-51949034 | None:intergenic | 50.0% |
| ! | GGAGTGGAGGCGTAAATTAG+AGG | - | Chr8:51949002-51949021 | None:intergenic | 50.0% |
| !! | TGAAGCTCTGAAACGCATGG+TGG | + | Chr8:51948703-51948722 | MsG0880044952.01.T01:CDS | 50.0% |
| GTGCCGAAAGAAGCAAGGCA+GGG | + | Chr8:51950180-51950199 | MsG0880044952.01.T01:CDS | 55.0% | |
| !! | TGAGGGTGCCGAAAGAAGCA+AGG | + | Chr8:51950175-51950194 | MsG0880044952.01.T01:CDS | 55.0% |
| ! | GGTGCCGAAAGAAGCAAGGC+AGG | + | Chr8:51950179-51950198 | MsG0880044952.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 51948659 | 51950377 | 51948659 | ID=MsG0880044952.01;Name=MsG0880044952.01 |
| Chr8 | mRNA | 51948659 | 51950377 | 51948659 | ID=MsG0880044952.01.T01;Parent=MsG0880044952.01;Name=MsG0880044952.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.5|0|1|1|0.66|3|0|316 |
| Chr8 | exon | 51948659 | 51948769 | 51948659 | ID=MsG0880044952.01.T01:exon:22179;Parent=MsG0880044952.01.T01 |
| Chr8 | exon | 51948945 | 51949204 | 51948945 | ID=MsG0880044952.01.T01:exon:22180;Parent=MsG0880044952.01.T01 |
| Chr8 | exon | 51949798 | 51950377 | 51949798 | ID=MsG0880044952.01.T01:exon:22181;Parent=MsG0880044952.01.T01 |
| Chr8 | CDS | 51948659 | 51948769 | 51948659 | ID=MsG0880044952.01.T01:cds;Parent=MsG0880044952.01.T01 |
| Chr8 | CDS | 51948945 | 51949204 | 51948945 | ID=MsG0880044952.01.T01:cds;Parent=MsG0880044952.01.T01 |
| Chr8 | CDS | 51949798 | 51950377 | 51949798 | ID=MsG0880044952.01.T01:cds;Parent=MsG0880044952.01.T01 |
| Gene Sequence |
| Protein sequence |
