AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013834.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013834.01.T01 MTR_3g049070 81.364 220 7 2 55 274 190 375 6.27e-120 348
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013834.01.T01 AT2G30910 57.872 235 57 7 40 271 179 374 2.05e-73 229
MsG0380013834.01.T01 AT2G31300 61.468 218 45 5 57 272 194 374 1.41e-72 227
MsG0380013834.01.T01 AT2G30910 60.550 218 46 6 57 271 194 374 2.56e-72 226
MsG0380013834.01.T01 AT2G30910 60.550 218 46 6 57 271 194 374 2.56e-72 226
MsG0380013834.01.T01 AT2G31300 60.396 202 41 5 57 256 194 358 2.13e-62 201

Find 84 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGAAATTGAATATCAATT+TGG 0.250033 3:-46320655 MsG0380013834.01.T01:three_prime_UTR
ATTGTCACGTAGATTTAATT+TGG 0.263510 3:-46320850 MsG0380013834.01.T01:three_prime_UTR
GATCAGTTCTCTGAAGCATT+TGG 0.274065 3:-46321369 MsG0380013834.01.T01:intron
TGGAAGAGAAGTTAGAATTT+TGG 0.283813 3:-46322603 MsG0380013834.01.T01:intron
ACATAGTCTCATATTCTATA+TGG 0.292083 3:-46320738 MsG0380013834.01.T01:three_prime_UTR
TTCAGATATTTGTCTTTCTA+AGG 0.293452 3:-46322684 MsG0380013834.01.T01:CDS
GTTGGCCCAGCCGCATTGAT+TGG 0.293723 3:+46322649 None:intergenic
AATCACGGAACACGACATTC+TGG 0.316967 3:+46322927 None:intergenic
AAGAATTGCTGTATGGGATT+TGG 0.350947 3:-46320928 MsG0380013834.01.T01:CDS
GTTTCTGAGAGAACGGTAAT+AGG 0.350950 3:-46322772 MsG0380013834.01.T01:CDS
CCATGCCCAATCAATGCGGC+TGG 0.362428 3:-46322655 MsG0380013834.01.T01:CDS
TGATGTGGGTCCTTCTCCTT+TGG 0.364729 3:-46322951 MsG0380013834.01.T01:CDS
GTCTCATATTCTATATGGTT+TGG 0.367361 3:-46320733 MsG0380013834.01.T01:three_prime_UTR
TTTACAGCCTCTCATATTCA+TGG 0.369098 3:-46320630 MsG0380013834.01.T01:three_prime_UTR
ATATTTGTCTTTCTAAGGTC+TGG 0.369693 3:-46322679 MsG0380013834.01.T01:CDS
GTACCCATTCTGATCCTTCA+AGG 0.371878 3:+46327110 None:intergenic
TTAATTTGGTTGTGAGCAAT+TGG 0.377470 3:-46320836 MsG0380013834.01.T01:three_prime_UTR
CTCTCATCATCTTGGACATT+CGG 0.378975 3:-46323414 MsG0380013834.01.T01:CDS
ATAGCATATACAAACAGTTT+TGG 0.380254 3:+46326498 None:intergenic
ATCAGTTCTCTGAAGCATTT+GGG 0.390252 3:-46321368 MsG0380013834.01.T01:intron
CTGCAGATGAAAGAGGAGTT+TGG 0.391042 3:-46322717 MsG0380013834.01.T01:CDS
AGCTTGATCTCTCATCATCT+TGG 0.394251 3:-46323422 MsG0380013834.01.T01:CDS
ATCGTTTCCCACACCATACT+TGG 0.404007 3:+46321329 None:intergenic
GTGTTGACACTGGTTTCAAT+TGG 0.419122 3:-46325803 MsG0380013834.01.T01:CDS
GTGCTGCTCTTTGTGTTCAA+TGG 0.424300 3:-46327060 MsG0380013834.01.T01:five_prime_UTR
TTGGCCCAGCCGCATTGATT+GGG 0.431502 3:+46322650 None:intergenic
CCAGCCGCATTGATTGGGCA+TGG 0.458245 3:+46322655 None:intergenic
GTATCATCTGGATCAAGATA+TGG 0.468909 3:-46322502 MsG0380013834.01.T01:CDS
ATCATACCTCTTGGTGAGCA+TGG 0.477656 3:-46321102 MsG0380013834.01.T01:CDS
TTCCCACACCATACTTGGAT+TGG 0.478929 3:+46321334 None:intergenic
TGTGTTCAATGGAGTCCAAA+AGG 0.493426 3:-46327049 MsG0380013834.01.T01:intron
TGTAGTTCTATCATACCTCT+TGG 0.495135 3:-46321111 MsG0380013834.01.T01:intron
ACTGGAAAATATATAATCAA+TGG 0.497542 3:-46320683 MsG0380013834.01.T01:three_prime_UTR
ATCACGGAACACGACATTCT+GGG 0.498335 3:+46322928 None:intergenic
AACAAGTTTGCAGTGGGAAG+TGG 0.503387 3:-46326523 MsG0380013834.01.T01:five_prime_UTR
GAGCGGAAGACAGTATCATC+TGG 0.508128 3:-46322514 MsG0380013834.01.T01:CDS
ATTATGAGCAGGAAAACAAC+TGG 0.512153 3:-46326477 MsG0380013834.01.T01:intron
CAGCCGCATTGATTGGGCAT+GGG 0.514380 3:+46322656 None:intergenic
TGAGCAATTGGAAGTGGTCA+AGG 0.522191 3:-46320824 MsG0380013834.01.T01:three_prime_UTR
TGGATGGAAGAATTGCTGTA+TGG 0.522720 3:-46320935 MsG0380013834.01.T01:CDS
AATTTCATGCAATGAATCAC+TGG 0.522841 3:-46320701 MsG0380013834.01.T01:three_prime_UTR
TACCAACTCTTGTTATCCTT+AGG 0.525803 3:-46327090 MsG0380013834.01.T01:five_prime_UTR
TTGTATATGCTATTATGAGC+AGG 0.529086 3:-46326488 MsG0380013834.01.T01:five_prime_UTR
AGATATGTCTGGAACCTTGA+AGG 0.529442 3:-46327124 MsG0380013834.01.T01:five_prime_UTR
GGATGGAAGAATTGCTGTAT+GGG 0.529737 3:-46320934 MsG0380013834.01.T01:CDS
ATTATTTGTTTCTGAGAGAA+CGG 0.529928 3:-46322779 MsG0380013834.01.T01:CDS
TATGCTGCCTGTGTTGACAC+TGG 0.531546 3:-46325813 MsG0380013834.01.T01:CDS
GAGCAGCACGGTTTAGCCTA+AGG 0.537294 3:+46327074 None:intergenic
GAACCTTGAAGGATCAGAAT+GGG 0.538758 3:-46327113 MsG0380013834.01.T01:five_prime_UTR
CATGCCCAATCAATGCGGCT+GGG 0.544767 3:-46322654 MsG0380013834.01.T01:CDS
ATGAGACTATGTCATCATAC+AGG 0.545906 3:+46320749 None:intergenic
AGCCTAAGGATAACAAGAGT+TGG 0.549485 3:+46327088 None:intergenic
GAGATTGATGAAGAATCTCA+TGG 0.550515 3:-46325925 MsG0380013834.01.T01:exon
ATGGGATTTGGAAAATGAGC+AGG 0.551586 3:-46320916 MsG0380013834.01.T01:CDS
GCAGAAAACAAGTTTGCAGT+GGG 0.561048 3:-46326529 MsG0380013834.01.T01:intron
CCTGAAACTACAGGATTGGA+TGG 0.561224 3:-46320951 MsG0380013834.01.T01:intron
GGCAATACTCTAGCTTATGT+AGG 0.567396 3:-46323372 MsG0380013834.01.T01:intron
GGCAGAAAACAAGTTTGCAG+TGG 0.567517 3:-46326530 MsG0380013834.01.T01:intron
CTATCAATTTCTCTTCGCAA+TGG 0.575460 3:+46325901 None:intergenic
AAAGAGAATTCAAAACAAGT+TGG 0.576457 3:+46322631 None:intergenic
GGAACCTTGAAGGATCAGAA+TGG 0.576474 3:-46327114 MsG0380013834.01.T01:five_prime_UTR
GGCCAATCCAAGTATGGTGT+GGG 0.581786 3:-46321336 MsG0380013834.01.T01:CDS
TGGTTGTGAGCAATTGGAAG+TGG 0.581972 3:-46320830 MsG0380013834.01.T01:three_prime_UTR
ACATTCTGGGCCAAAGGAGA+AGG 0.582007 3:+46322941 None:intergenic
AATAAGCTTATAATTCAAGA+AGG 0.583387 3:+46320892 None:intergenic
GAGAGAACGGTAATAGGTGT+GGG 0.585251 3:-46322766 MsG0380013834.01.T01:CDS
TGAGAGAACGGTAATAGGTG+TGG 0.589873 3:-46322767 MsG0380013834.01.T01:CDS
TGGATCAAGATATGGCTCAC+AGG 0.591647 3:-46322494 MsG0380013834.01.T01:intron
TGGCCAATCCAAGTATGGTG+TGG 0.598684 3:-46321337 MsG0380013834.01.T01:CDS
AACACGACATTCTGGGCCAA+AGG 0.611884 3:+46322935 None:intergenic
TTGTGATCTTGTTGAGAATG+TGG 0.618452 3:-46325967 MsG0380013834.01.T01:five_prime_UTR
GGGATATGATTGTAACCCAA+TGG 0.637775 3:-46322746 MsG0380013834.01.T01:CDS
CATCACGGAGAGGCAAATCA+CGG 0.642366 3:+46322912 None:intergenic
TTGTCAGGTATCTTGGAGAG+CGG 0.646625 3:-46322531 MsG0380013834.01.T01:intron
CTTGGACATTCGGAGTCAAG+TGG 0.649894 3:-46323404 MsG0380013834.01.T01:CDS
TAAGCTAGAGTATTGCCACT+TGG 0.653319 3:+46323378 None:intergenic
ATTGAACACAAAGAGCAGCA+CGG 0.658833 3:+46327062 None:intergenic
AATATTCCATGCTCACCAAG+AGG 0.661805 3:+46321096 None:intergenic
ATTGAAACCAGTGTCAACAC+AGG 0.665376 3:+46325806 None:intergenic
TGCTGACCCACATCACGGAG+AGG 0.674971 3:+46322902 None:intergenic
AATGTATCCATGAATATGAG+AGG 0.682737 3:+46320623 None:intergenic
GTGAGCATGGAATATTGACA+AGG 0.693718 3:-46321089 MsG0380013834.01.T01:CDS
TGGCCCATGCCCAATCAATG+CGG 0.698645 3:-46322659 MsG0380013834.01.T01:CDS
GGAGTCAAGTGGTCACCAAG+TGG 0.703568 3:-46323393 MsG0380013834.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAAATAAATTATAT+AGG + Chr3:46321267-46321286 None:intergenic 0.0%
!! AAAATATTAAGACAATTATT+TGG + Chr3:46321304-46321323 None:intergenic 10.0%
!! AAATAAACTAATATATTGTA+GGG - Chr3:46321649-46321668 MsG0380013834.01.T01:intron 10.0%
!! AAATAAATAAATTATATAGG+TGG + Chr3:46321264-46321283 None:intergenic 10.0%
!!! ATATTTTTCAGAAAAAAATA+TGG - Chr3:46321808-46321827 MsG0380013834.01.T01:intron 10.0%
!!! GAATTAAATTAACATTTTTA+TGG - Chr3:46320955-46320974 MsG0380013834.01.T01:intron 10.0%
!!! TTCTTTTTTAAAAATATTTG+GGG - Chr3:46324834-46324853 MsG0380013834.01.T01:intron 10.0%
!!! TTTTAAAAAAGAATACAAAT+GGG + Chr3:46324827-46324846 None:intergenic 10.0%
!!! TTTTTAAAAAAGAATACAAA+TGG + Chr3:46324828-46324847 None:intergenic 10.0%
!! AAATAAACTAAAAAATCTGT+TGG - Chr3:46323781-46323800 MsG0380013834.01.T01:intron 15.0%
!! AATAATGTTAACATATGAAA+TGG + Chr3:46322373-46322392 None:intergenic 15.0%
!! AATGTTAATTTAATTCTAGA+AGG + Chr3:46320951-46320970 None:intergenic 15.0%
!! ATATATAATATAACCAACTA+TGG + Chr3:46326721-46326740 None:intergenic 15.0%
!! CAAATAAACTAATATATTGT+AGG - Chr3:46321648-46321667 MsG0380013834.01.T01:intron 15.0%
!! CTTAAAATAAATATGAACTT+TGG + Chr3:46326304-46326323 None:intergenic 15.0%
!! GAAAATATCAGTAAATTATT+CGG + Chr3:46325102-46325121 None:intergenic 15.0%
!! TCAAAATCAATAATGTATAA+AGG + Chr3:46320761-46320780 None:intergenic 15.0%
!!! AATAATTTACTGATATTTTC+TGG - Chr3:46325102-46325121 MsG0380013834.01.T01:intron 15.0%
!!! AATGTAAAAAAGTTTTAAAC+AGG - Chr3:46326348-46326367 MsG0380013834.01.T01:intron 15.0%
!!! ATAAGAATATATTTTGCTAT+AGG + Chr3:46323618-46323637 None:intergenic 15.0%
!!! CTTTAAAATATATTTGATGT+CGG - Chr3:46323924-46323943 MsG0380013834.01.T01:intron 15.0%
!!! TATTAAAAGAGTACTATTAA+AGG - Chr3:46324740-46324759 MsG0380013834.01.T01:intron 15.0%
!!! TTTTTTTTTTTGAAAGAAAC+AGG + Chr3:46322460-46322479 None:intergenic 15.0%
!! AACATGAAAAAGAAACATAT+AGG + Chr3:46324646-46324665 None:intergenic 20.0%
!! AATAAGCTTATAATTCAAGA+AGG + Chr3:46327049-46327068 None:intergenic 20.0%
!! ACTGGAAAATATATAATCAA+TGG - Chr3:46327255-46327274 MsG0380013834.01.T01:intron 20.0%
!! ATAATGTATAAAGGAGAAAT+TGG + Chr3:46320752-46320771 None:intergenic 20.0%
!! ATACTATCGTAAAATATGAT+TGG + Chr3:46326377-46326396 None:intergenic 20.0%
!! ATCTTGAAAATAAAGAGAAA+AGG + Chr3:46324100-46324119 None:intergenic 20.0%
!! ATGAACTTATTTAGAGAAAA+TGG - Chr3:46325815-46325834 MsG0380013834.01.T01:CDS 20.0%
!! CTAGAAATTGAATATCAATT+TGG - Chr3:46327283-46327302 MsG0380013834.01.T01:intron 20.0%
!! GAAAAAAAAACACAAAAAGA+AGG + Chr3:46325376-46325395 None:intergenic 20.0%
!! GTAATGTAAATGTAAATACT+GGG - Chr3:46321187-46321206 MsG0380013834.01.T01:intron 20.0%
!! TAAAACCATATAACTTCTAA+AGG + Chr3:46321366-46321385 None:intergenic 20.0%
!! TAATGTAAATGTAAATACTG+GGG - Chr3:46321188-46321207 MsG0380013834.01.T01:intron 20.0%
!! TACTATCGTAAAATATGATT+GGG + Chr3:46326376-46326395 None:intergenic 20.0%
!! TCATCAATGGTTATAATATT+TGG - Chr3:46326127-46326146 MsG0380013834.01.T01:intron 20.0%
!! TGAACTTATTTAGAGAAAAT+GGG - Chr3:46325816-46325835 MsG0380013834.01.T01:CDS 20.0%
!! TGTAATGTAAATGTAAATAC+TGG - Chr3:46321186-46321205 MsG0380013834.01.T01:intron 20.0%
!! TTCTTTATGTTGTTAAATTG+AGG - Chr3:46326534-46326553 MsG0380013834.01.T01:intron 20.0%
!! TTTATACTAGCTGAAATTAT+GGG - Chr3:46324615-46324634 MsG0380013834.01.T01:intron 20.0%
!! TTTCAAAAATAGCAAAGTAT+CGG + Chr3:46323868-46323887 None:intergenic 20.0%
!! TTTGTAGTTAAAATGATGTA+AGG - Chr3:46323671-46323690 MsG0380013834.01.T01:intron 20.0%
!!! AAAAATGTATTGATGCTATT+AGG - Chr3:46324764-46324783 MsG0380013834.01.T01:intron 20.0%
!!! ATATATTTTGTTGATGATGT+GGG - Chr3:46324973-46324992 MsG0380013834.01.T01:intron 20.0%
!!! TAATGAAATTGATTTCTAAC+CGG + Chr3:46325523-46325542 None:intergenic 20.0%
!!! TCTTGTTTTGAACTTTTAAT+AGG - Chr3:46324320-46324339 MsG0380013834.01.T01:intron 20.0%
!!! TTAATTTAATTCTAGAAGGT+AGG + Chr3:46320947-46320966 None:intergenic 20.0%
!!! TTTTATACTAGCTGAAATTA+TGG - Chr3:46324614-46324633 MsG0380013834.01.T01:intron 20.0%
!!! TTTTTAAAAATATTTGGGGT+TGG - Chr3:46324838-46324857 MsG0380013834.01.T01:intron 20.0%
! AAACAACAATCACAGTAATT+AGG + Chr3:46323290-46323309 None:intergenic 25.0%
! AAACCTTTATAGATCATCAA+TGG - Chr3:46326114-46326133 MsG0380013834.01.T01:intron 25.0%
! AAAGAGAATTCAAAACAAGT+TGG + Chr3:46325310-46325329 None:intergenic 25.0%
! AAAGTACATTATACATCCTT+TGG - Chr3:46324436-46324455 MsG0380013834.01.T01:intron 25.0%
! AACTTATTTAGAGAAAATGG+GGG - Chr3:46325818-46325837 MsG0380013834.01.T01:CDS 25.0%
! ACATAGTCTCATATTCTATA+TGG - Chr3:46327200-46327219 MsG0380013834.01.T01:intron 25.0%
! AGTACATCTGATATGAAATT+TGG - Chr3:46324171-46324190 MsG0380013834.01.T01:intron 25.0%
! ATAATATAACCAACTATGGT+TGG + Chr3:46326717-46326736 None:intergenic 25.0%
! ATAATTTATATTACCTCTGC+AGG - Chr3:46323006-46323025 MsG0380013834.01.T01:intron 25.0%
! ATCAATGCTATTATTTCAGT+TGG + Chr3:46325869-46325888 None:intergenic 25.0%
! ATGAAAAAGAAACATATAGG+TGG + Chr3:46324643-46324662 None:intergenic 25.0%
! ATTGATATGAGTTTCCATTA+AGG - Chr3:46324696-46324715 MsG0380013834.01.T01:intron 25.0%
! ATTGTCACGTAGATTTAATT+TGG - Chr3:46327088-46327107 MsG0380013834.01.T01:five_prime_UTR 25.0%
! CAAAAAAATATCAGACACAT+AGG - Chr3:46323822-46323841 MsG0380013834.01.T01:intron 25.0%
! CTATACCTCATCAATTTAAA+TGG + Chr3:46321779-46321798 None:intergenic 25.0%
! CTTAACCATTTAAATTGATG+AGG - Chr3:46321771-46321790 MsG0380013834.01.T01:intron 25.0%
! GAACTTATTTAGAGAAAATG+GGG - Chr3:46325817-46325836 MsG0380013834.01.T01:CDS 25.0%
! GTATTATAAATAAGATGCAG+AGG - Chr3:46322740-46322759 MsG0380013834.01.T01:CDS 25.0%
! GTATTCTATATATCAAGTAG+AGG + Chr3:46322938-46322957 None:intergenic 25.0%
! GTCTATTCAAATAATCAAAC+AGG + Chr3:46326226-46326245 None:intergenic 25.0%
! GTTAACTCAATGTTAGTAAT+AGG - Chr3:46322594-46322613 MsG0380013834.01.T01:intron 25.0%
! GTTCATATATGATTTATGAC+AGG - Chr3:46322411-46322430 MsG0380013834.01.T01:intron 25.0%
! GTTTGAGAATAAGAGAATAT+CGG - Chr3:46325638-46325657 MsG0380013834.01.T01:intron 25.0%
! TAAATGGTTAAGTAATACCA+AGG + Chr3:46321763-46321782 None:intergenic 25.0%
! TCATTTGGATATCTATCTAA+TGG - Chr3:46325695-46325714 MsG0380013834.01.T01:intron 25.0%
! TTCAGATATTTGTCTTTCTA+AGG - Chr3:46325254-46325273 MsG0380013834.01.T01:intron 25.0%
! TTTCCTACAAAATCAAAACA+TGG - Chr3:46321865-46321884 MsG0380013834.01.T01:intron 25.0%
! TTTGAGAATAAGAGAATATC+GGG - Chr3:46325639-46325658 MsG0380013834.01.T01:intron 25.0%
!! AACTTAAAAAGTATGTACTC+AGG + Chr3:46324251-46324270 None:intergenic 25.0%
!! ACATTGAGTTAACGATATTT+TGG + Chr3:46322587-46322606 None:intergenic 25.0%
!! ACCCAATACATAAAAGATTT+TGG + Chr3:46321161-46321180 None:intergenic 25.0%
!! AGCCAAAATCTTTTATGTAT+TGG - Chr3:46321156-46321175 MsG0380013834.01.T01:intron 25.0%
!! ATAGCATATACAAACAGTTT+TGG + Chr3:46321443-46321462 None:intergenic 25.0%
!! GAAAAAGTACAAGATCATTA+GGG + Chr3:46326695-46326714 None:intergenic 25.0%
!! GCCAAAATCTTTTATGTATT+GGG - Chr3:46321157-46321176 MsG0380013834.01.T01:intron 25.0%
!! GTATTTTCCACCTTTATAAA+AGG - Chr3:46324031-46324050 MsG0380013834.01.T01:intron 25.0%
!! TAACCATTGATGATCTATAA+AGG + Chr3:46326120-46326139 None:intergenic 25.0%
!! TACTTTTACAGTGTAAAAAG+AGG + Chr3:46325939-46325958 None:intergenic 25.0%
!! TCCATTCTAAAAGATTAGTT+TGG + Chr3:46321711-46321730 None:intergenic 25.0%
!!! AAAGGTTTTTTCAGGTTTTA+AGG + Chr3:46326102-46326121 None:intergenic 25.0%
!!! ACAGGTAAACTACATTTTTT+AGG - Chr3:46325462-46325481 MsG0380013834.01.T01:intron 25.0%
!!! ATTATTTGTTTCTGAGAGAA+CGG - Chr3:46325159-46325178 MsG0380013834.01.T01:intron 25.0%
!!! ATTGTAGGGTGATTTTTTAT+TGG - Chr3:46321663-46321682 MsG0380013834.01.T01:intron 25.0%
!!! CCATTCTAAAAGATTAGTTT+GGG + Chr3:46321710-46321729 None:intergenic 25.0%
!!! GATATATTTTGTTGATGATG+TGG - Chr3:46324972-46324991 MsG0380013834.01.T01:intron 25.0%
!!! GATTTCATTCTAAAATACTG+AGG + Chr3:46323345-46323364 None:intergenic 25.0%
!!! GTTAAGAAATAGTGGATAAA+TGG + Chr3:46326033-46326052 None:intergenic 25.0%
!!! TCTATCCATTTAGTTTTTCA+TGG - Chr3:46325068-46325087 MsG0380013834.01.T01:intron 25.0%
!!! TGATCTATAAAGGTTTTTTC+AGG + Chr3:46326110-46326129 None:intergenic 25.0%
!!! TGATTTTTTATTGGTTTGCA+AGG - Chr3:46321672-46321691 MsG0380013834.01.T01:intron 25.0%
!!! TGTTTTGATTTTGTAGGAAA+AGG + Chr3:46321865-46321884 None:intergenic 25.0%
!!! TTGTGTTTTTTTTTCCTCTA+GGG - Chr3:46325381-46325400 MsG0380013834.01.T01:intron 25.0%
!!! TTTGTGTTTTTTTTTCCTCT+AGG - Chr3:46325380-46325399 MsG0380013834.01.T01:intron 25.0%
!!! TTTTTTGAAAGAAACAGGTT+GGG + Chr3:46322455-46322474 None:intergenic 25.0%
!!! TTTTTTTGAAAGAAACAGGT+TGG + Chr3:46322456-46322475 None:intergenic 25.0%
AACGTTTCTACAAGTAATCA+TGG + Chr3:46324876-46324895 None:intergenic 30.0%
AACTAAATGGATAGAAAGAG+TGG + Chr3:46325063-46325082 None:intergenic 30.0%
AACTCGTATAAACTAAGCTT+TGG + Chr3:46326477-46326496 None:intergenic 30.0%
AACTTCTATGTAACAGCTAT+AGG - Chr3:46322712-46322731 MsG0380013834.01.T01:CDS 30.0%
AATGTATCCATGAATATGAG+AGG + Chr3:46327318-46327337 None:intergenic 30.0%
AATTTCATGCAATGAATCAC+TGG - Chr3:46327237-46327256 MsG0380013834.01.T01:intron 30.0%
ACTATGGTCAACAAAGATAA+TGG + Chr3:46321583-46321602 None:intergenic 30.0%
ACTTGTGATCATTACAAGTA+GGG - Chr3:46323446-46323465 MsG0380013834.01.T01:intron 30.0%
AGATGACAACTAAACCTTAA+TGG + Chr3:46324713-46324732 None:intergenic 30.0%
AGCAAGAATACCAACATTAT+CGG + Chr3:46323093-46323112 None:intergenic 30.0%
ATCTGATATGAAATTTGGAG+AGG - Chr3:46324176-46324195 MsG0380013834.01.T01:intron 30.0%
ATGACAATTGTGCTTATAGT+TGG - Chr3:46323712-46323731 MsG0380013834.01.T01:intron 30.0%
CAAAATCAACAAATCACATG+AGG + Chr3:46324220-46324239 None:intergenic 30.0%
CAGTCAAAAGAAAAACAATG+TGG + Chr3:46323969-46323988 None:intergenic 30.0%
CTAATGTGAGAAAATTGAAG+AGG - Chr3:46325556-46325575 MsG0380013834.01.T01:intron 30.0%
GAAAATGACTATATAAGCAG+AGG + Chr3:46324472-46324491 None:intergenic 30.0%
GAAGACCATGAAAAACTAAA+TGG + Chr3:46325076-46325095 None:intergenic 30.0%
GATAATAACAACTCTGAATG+TGG - Chr3:46324070-46324089 MsG0380013834.01.T01:intron 30.0%
GGATGTATAATGTACTTTAC+AGG + Chr3:46324434-46324453 None:intergenic 30.0%
GTAATAGCAACAAATACAGT+TGG + Chr3:46324935-46324954 None:intergenic 30.0%
GTCTCATATTCTATATGGTT+TGG - Chr3:46327205-46327224 MsG0380013834.01.T01:intron 30.0%
TAAGGAAGATGTATTGTATC+CGG - Chr3:46323689-46323708 MsG0380013834.01.T01:intron 30.0%
TTAGGTCAAACTAGTGAAAT+CGG - Chr3:46325899-46325918 MsG0380013834.01.T01:CDS 30.0%
TTCAATGTTCAAAATCACAC+AGG + Chr3:46320700-46320719 None:intergenic 30.0%
TTGATGTTTGCATGTCAAAT+TGG - Chr3:46324130-46324149 MsG0380013834.01.T01:intron 30.0%
TTGTATATGCTATTATGAGC+AGG - Chr3:46321450-46321469 MsG0380013834.01.T01:intron 30.0%
! ACTTAAATTAGTCTCATGCT+AGG + Chr3:46325620-46325639 None:intergenic 30.0%
! ATCCACTATTTCTTAACTTC+AGG - Chr3:46326036-46326055 MsG0380013834.01.T01:intron 30.0%
! ATCTACACCTTTTATAAAGG+TGG + Chr3:46324041-46324060 None:intergenic 30.0%
! ATTTTATTCCTTGCCAGTTT+CGG - Chr3:46326938-46326957 MsG0380013834.01.T01:intron 30.0%
! CTTTGCCTTTAGAAGTTATA+TGG - Chr3:46321358-46321377 MsG0380013834.01.T01:CDS 30.0%
! GAAATTTGTGTAGCTACTTT+AGG + Chr3:46326418-46326437 None:intergenic 30.0%
! GAATCAGAAGTTGTCATTTA+AGG - Chr3:46325789-46325808 MsG0380013834.01.T01:CDS 30.0%
! GGAAAAAGTACAAGATCATT+AGG + Chr3:46326696-46326715 None:intergenic 30.0%
! TATATGTTTTGTCAGCTACT+AGG - Chr3:46323187-46323206 MsG0380013834.01.T01:intron 30.0%
! TCTTTTTGTGCTTTTACTTG+TGG - Chr3:46324909-46324928 MsG0380013834.01.T01:intron 30.0%
! TGCATCTACACCTTTTATAA+AGG + Chr3:46324044-46324063 None:intergenic 30.0%
! TGGAAGAGAAGTTAGAATTT+TGG - Chr3:46325335-46325354 MsG0380013834.01.T01:intron 30.0%
! TGGATGTTTTCTCAGATTTA+AGG - Chr3:46321885-46321904 MsG0380013834.01.T01:intron 30.0%
! TGTATTTGTTGCTATTACAC+AGG - Chr3:46324937-46324956 MsG0380013834.01.T01:intron 30.0%
! TTAATTTGGTTGTGAGCAAT+TGG - Chr3:46327102-46327121 MsG0380013834.01.T01:five_prime_UTR 30.0%
! TTGATGCTATTAGGTTTTCA+TGG - Chr3:46324773-46324792 MsG0380013834.01.T01:intron 30.0%
!! ATATTTGTCTTTCTAAGGTC+TGG - Chr3:46325259-46325278 MsG0380013834.01.T01:intron 30.0%
!! CCCAAACTAATCTTTTAGAA+TGG - Chr3:46321707-46321726 MsG0380013834.01.T01:intron 30.0%
!! GAATATATTTTGCTATAGGC+AGG + Chr3:46323614-46323633 None:intergenic 30.0%
!! GCATTGATTGTAGTTGTATT+AGG - Chr3:46325881-46325900 MsG0380013834.01.T01:CDS 30.0%
!! GGTTATAATATTTGGTTCTG+CGG - Chr3:46326135-46326154 MsG0380013834.01.T01:intron 30.0%
!! TGCATTGCTGAATTTTGTTT+TGG - Chr3:46321387-46321406 MsG0380013834.01.T01:intron 30.0%
!! TTCTAAAAGATTAGTTTGGG+TGG + Chr3:46321707-46321726 None:intergenic 30.0%
!!! CATCCATGTTTTGATTTTGT+AGG + Chr3:46321871-46321890 None:intergenic 30.0%
!!! GTGACTGATTTGTTTTTTTC+CGG - Chr3:46326802-46326821 MsG0380013834.01.T01:intron 30.0%
!!! TGTGTTTTTTTTTCCTCTAG+GGG - Chr3:46325382-46325401 MsG0380013834.01.T01:intron 30.0%
!!! TTACTGATATTTTCTGGAAC+TGG - Chr3:46325108-46325127 MsG0380013834.01.T01:intron 30.0%
!!! TTGTTTTGAATTCTCTTTGC+AGG - Chr3:46325312-46325331 MsG0380013834.01.T01:intron 30.0%
AAAAAAACTATCAGCTCGAG+GGG - Chr3:46325662-46325681 MsG0380013834.01.T01:intron 35.0%
AACTGGCAAGGAATAAAATC+AGG + Chr3:46326937-46326956 None:intergenic 35.0%
AAGAATTGCTGTATGGGATT+TGG - Chr3:46327010-46327029 MsG0380013834.01.T01:intron 35.0%
ACAGTCAAGACTCAAAACTA+TGG + Chr3:46321599-46321618 None:intergenic 35.0%
ATGACTGAAGTAAAACAGCA+AGG + Chr3:46322242-46322261 None:intergenic 35.0%
ATGAGACTATGTCATCATAC+AGG + Chr3:46327192-46327211 None:intergenic 35.0%
ATGGTCTTCATGACATTATG+AGG + Chr3:46326014-46326033 None:intergenic 35.0%
ATTATGAGCAGGAAAACAAC+TGG - Chr3:46321461-46321480 MsG0380013834.01.T01:intron 35.0%
ATTTATATTACCTCTGCAGG+TGG - Chr3:46323009-46323028 MsG0380013834.01.T01:intron 35.0%
CAATGAGACAATTGAATCTC+CGG - Chr3:46325501-46325520 MsG0380013834.01.T01:intron 35.0%
CACGAACATGAAATGAACAA+AGG + Chr3:46322209-46322228 None:intergenic 35.0%
CACTTGTGATCATTACAAGT+AGG - Chr3:46323445-46323464 MsG0380013834.01.T01:intron 35.0%
CCACTAAGTTTAATCCAACA+GGG + Chr3:46321048-46321067 None:intergenic 35.0%
CTATAAGCACAATTGTCATC+CGG + Chr3:46323711-46323730 None:intergenic 35.0%
CTATCAATTTCTCTTCGCAA+TGG + Chr3:46322040-46322059 None:intergenic 35.0%
CTCCTGAAGTTAAGAAATAG+TGG + Chr3:46326041-46326060 None:intergenic 35.0%
CTTTCAACTCTTAGATGACT+TGG + Chr3:46320984-46321003 None:intergenic 35.0%
GAAAAAAACTATCAGCTCGA+GGG - Chr3:46325661-46325680 MsG0380013834.01.T01:intron 35.0%
GAGATTGATGAAGAATCTCA+TGG - Chr3:46322013-46322032 MsG0380013834.01.T01:intron 35.0%
GCAAGAATACCAACATTATC+GGG + Chr3:46323092-46323111 None:intergenic 35.0%
GTAAAACAGCAAGGCTTAAA+TGG + Chr3:46322233-46322252 None:intergenic 35.0%
GTATCATCTGGATCAAGATA+TGG - Chr3:46325436-46325455 MsG0380013834.01.T01:intron 35.0%
GTTAGTAATAGGACTCCTAA+GGG - Chr3:46322605-46322624 MsG0380013834.01.T01:CDS 35.0%
GTTGAAACTTCAAAAACACG+TGG - Chr3:46326635-46326654 MsG0380013834.01.T01:intron 35.0%
TAAGATGCAGAGGAAAAGAA+AGG - Chr3:46322750-46322769 MsG0380013834.01.T01:CDS 35.0%
TAGAAGGTAGGAACAAAACT+GGG + Chr3:46320935-46320954 None:intergenic 35.0%
TATGTAACTATCCGTGTCTT+TGG + Chr3:46323584-46323603 None:intergenic 35.0%
TCCACTAAGTTTAATCCAAC+AGG + Chr3:46321049-46321068 None:intergenic 35.0%
TCTCTGTTTGCAAAAGTAAC+AGG + Chr3:46325758-46325777 None:intergenic 35.0%
TGAGAAAATTGAAGAGGTTG+TGG - Chr3:46325562-46325581 MsG0380013834.01.T01:intron 35.0%
TGTTAGTAATAGGACTCCTA+AGG - Chr3:46322604-46322623 MsG0380013834.01.T01:CDS 35.0%
TTGTGATCTTGTTGAGAATG+TGG - Chr3:46321971-46321990 MsG0380013834.01.T01:intron 35.0%
TTTACAGCCTCTCATATTCA+TGG - Chr3:46327308-46327327 MsG0380013834.01.T01:intron 35.0%
TTTATATTACCTCTGCAGGT+GGG - Chr3:46323010-46323029 MsG0380013834.01.T01:intron 35.0%
TTTCAGGGTGCAAATAAACT+TGG + Chr3:46321516-46321535 None:intergenic 35.0%
TTTGCACCCTGAAAATATGA+TGG - Chr3:46321522-46321541 MsG0380013834.01.T01:intron 35.0%
! AACATTGAACTTTTCACCCT+TGG - Chr3:46320711-46320730 MsG0380013834.01.T01:three_prime_UTR 35.0%
! AACTTAGTGGATGTGATTGA+AGG - Chr3:46321058-46321077 MsG0380013834.01.T01:intron 35.0%
! AACTTGGTCAATGAAGTGTT+AGG + Chr3:46321500-46321519 None:intergenic 35.0%
! ATGGTCAACAAAGATAATGG+TGG + Chr3:46321580-46321599 None:intergenic 35.0%
! ATTGGGATAAAGGATTGGTA+GGG - Chr3:46322782-46322801 MsG0380013834.01.T01:CDS 35.0%
! ATTTTATAACTGCTGCCCTT+AGG + Chr3:46322623-46322642 None:intergenic 35.0%
! GCACAACCATCATATTTTCA+GGG + Chr3:46321531-46321550 None:intergenic 35.0%
! GGAATGTGTTTCATACCTTT+TGG + Chr3:46320907-46320926 None:intergenic 35.0%
! GTTTTCTTGCTAGATATGTC+TGG - Chr3:46320803-46320822 MsG0380013834.01.T01:three_prime_UTR 35.0%
! TACCAACTCTTGTTATCCTT+AGG - Chr3:46320848-46320867 MsG0380013834.01.T01:three_prime_UTR 35.0%
! TGCACAACCATCATATTTTC+AGG + Chr3:46321532-46321551 None:intergenic 35.0%
! TGTAGTTCTATCATACCTCT+TGG - Chr3:46326827-46326846 MsG0380013834.01.T01:intron 35.0%
! TTTTATGGCCAATCCAAGTA+TGG - Chr3:46326596-46326615 MsG0380013834.01.T01:intron 35.0%
! TTTTGAATTCTCTTTGCAGG+TGG - Chr3:46325315-46325334 MsG0380013834.01.T01:intron 35.0%
!! AAAGAAAGGTATTCAGGGAT+TGG - Chr3:46322764-46322783 MsG0380013834.01.T01:CDS 35.0%
!! AAGAAAGGTATTCAGGGATT+GGG - Chr3:46322765-46322784 MsG0380013834.01.T01:CDS 35.0%
!! ACTGCTTTTATGAGCAGTTT+GGG - Chr3:46322560-46322579 MsG0380013834.01.T01:intron 35.0%
!! AGAGGAAAAGAAAGGTATTC+AGG - Chr3:46322758-46322777 MsG0380013834.01.T01:CDS 35.0%
!! ATCAGTTCTCTGAAGCATTT+GGG - Chr3:46326570-46326589 MsG0380013834.01.T01:intron 35.0%
!! GAAGCATTTGGGAAGTTTTA+TGG - Chr3:46326581-46326600 MsG0380013834.01.T01:intron 35.0%
!! GAGGAAAAGAAAGGTATTCA+GGG - Chr3:46322759-46322778 MsG0380013834.01.T01:CDS 35.0%
!! GCTGTTTTACTTCAGTCATT+TGG - Chr3:46322243-46322262 MsG0380013834.01.T01:intron 35.0%
!! TCTTTGGAACTGTAACCAAT+TGG + Chr3:46323568-46323587 None:intergenic 35.0%
!!! GTACTTTTTCCAACCATAGT+TGG - Chr3:46326705-46326724 MsG0380013834.01.T01:intron 35.0%
!!! TCACTGTATGACTTGTTTTC+AGG - Chr3:46325135-46325154 MsG0380013834.01.T01:intron 35.0%
AAAAAACTATCAGCTCGAGG+GGG - Chr3:46325663-46325682 MsG0380013834.01.T01:intron 40.0%
AATATTCCATGCTCACCAAG+AGG + Chr3:46326845-46326864 None:intergenic 40.0%
ACAACGGCTTAACTAGAGTT+AGG + Chr3:46321093-46321112 None:intergenic 40.0%
ACCAAGACTCTCGAATTTCT+TGG - Chr3:46322840-46322859 MsG0380013834.01.T01:intron 40.0%
AGCCTAAGGATAACAAGAGT+TGG + Chr3:46320853-46320872 None:intergenic 40.0%
AGCTTGATCTCTCATCATCT+TGG - Chr3:46324516-46324535 MsG0380013834.01.T01:intron 40.0%
AGCTTGATGTTGTGAACACA+TGG + Chr3:46323508-46323527 None:intergenic 40.0%
AGGGTAGTAAAGGGCAAAAT+TGG + Chr3:46321231-46321250 None:intergenic 40.0%
AGTTGAGGTTTAGCATTGTC+TGG - Chr3:46326076-46326095 MsG0380013834.01.T01:intron 40.0%
ATGAGGAAGCTAGCATATGT+AGG + Chr3:46325997-46326016 None:intergenic 40.0%
ATGATTTATGACAGGCCCAT+GGG - Chr3:46322419-46322438 MsG0380013834.01.T01:intron 40.0%
ATGGGATTTGGAAAATGAGC+AGG - Chr3:46327022-46327041 MsG0380013834.01.T01:intron 40.0%
ATTGAAACCAGTGTCAACAC+AGG + Chr3:46322135-46322154 None:intergenic 40.0%
ATTGAACACAAAGAGCAGCA+CGG + Chr3:46320879-46320898 None:intergenic 40.0%
CAAACTGCTCATAAAAGCAG+TGG + Chr3:46322561-46322580 None:intergenic 40.0%
CATCCAATCCTGTAGTTTCA+GGG + Chr3:46326989-46327008 None:intergenic 40.0%
CATCTGCAGCAAAAACCATT+GGG + Chr3:46325210-46325229 None:intergenic 40.0%
CCAAGACTCTCGAATTTCTT+GGG - Chr3:46322841-46322860 MsG0380013834.01.T01:intron 40.0%
CCCTGTTGGATTAAACTTAG+TGG - Chr3:46321045-46321064 MsG0380013834.01.T01:intron 40.0%
CTAGAAGGTAGGAACAAAAC+TGG + Chr3:46320936-46320955 None:intergenic 40.0%
CTCTCATCATCTTGGACATT+CGG - Chr3:46324524-46324543 MsG0380013834.01.T01:intron 40.0%
CTTCAGTGACAAGTGTTTCA+TGG - Chr3:46323063-46323082 MsG0380013834.01.T01:intron 40.0%
GAACCTTGAAGGATCAGAAT+GGG - Chr3:46320825-46320844 MsG0380013834.01.T01:three_prime_UTR 40.0%
GAGTGACTAGAATTCAACTG+TGG - Chr3:46321838-46321857 MsG0380013834.01.T01:intron 40.0%
GCAGAAAACAAGTTTGCAGT+GGG - Chr3:46321409-46321428 MsG0380013834.01.T01:intron 40.0%
GGAAAAAAACTATCAGCTCG+AGG - Chr3:46325660-46325679 MsG0380013834.01.T01:intron 40.0%
GGATGGAAGAATTGCTGTAT+GGG - Chr3:46327004-46327023 MsG0380013834.01.T01:intron 40.0%
GGGATATGATTGTAACCCAA+TGG - Chr3:46325192-46325211 MsG0380013834.01.T01:intron 40.0%
GGTATGATAGAACTACAAGC+CGG + Chr3:46326824-46326843 None:intergenic 40.0%
GTATTCAGGGATTGGGATAA+AGG - Chr3:46322772-46322791 MsG0380013834.01.T01:CDS 40.0%
GTGAGCATGGAATATTGACA+AGG - Chr3:46326849-46326868 MsG0380013834.01.T01:intron 40.0%
TAGGAACAAAACTGGGACAT+GGG + Chr3:46320928-46320947 None:intergenic 40.0%
TATGATTTATGACAGGCCCA+TGG - Chr3:46322418-46322437 MsG0380013834.01.T01:intron 40.0%
TCATCTGCAGCAAAAACCAT+TGG + Chr3:46325211-46325230 None:intergenic 40.0%
TGATACTTCCCTGAAACTAC+AGG - Chr3:46326978-46326997 MsG0380013834.01.T01:intron 40.0%
TGCATCAGTCTTCAAACAGT+GGG + Chr3:46324291-46324310 None:intergenic 40.0%
TGCTCATAAAAGCAGTGGAT+GGG + Chr3:46322556-46322575 None:intergenic 40.0%
TGGATGGAAGAATTGCTGTA+TGG - Chr3:46327003-46327022 MsG0380013834.01.T01:intron 40.0%
TGGTTACAGTTCCAAAGACA+CGG - Chr3:46323570-46323589 MsG0380013834.01.T01:intron 40.0%
TGTGTTCAATGGAGTCCAAA+AGG - Chr3:46320889-46320908 MsG0380013834.01.T01:exon 40.0%
TTGCATCAGTCTTCAAACAG+TGG + Chr3:46324292-46324311 None:intergenic 40.0%
TTGCATGTCAAATTGGCACA+GGG - Chr3:46324137-46324156 MsG0380013834.01.T01:intron 40.0%
TTTGCATGTCAAATTGGCAC+AGG - Chr3:46324136-46324155 MsG0380013834.01.T01:intron 40.0%
! AATTTTGCCCTTTACTACCC+TGG - Chr3:46321230-46321249 MsG0380013834.01.T01:intron 40.0%
! AGATATGTCTGGAACCTTGA+AGG - Chr3:46320814-46320833 MsG0380013834.01.T01:three_prime_UTR 40.0%
! AGGTAATATCTGGGATAGAC+TGG - Chr3:46320620-46320639 MsG0380013834.01.T01:three_prime_UTR 40.0%
! CTTTTGCAAACAGAGATGCA+TGG - Chr3:46325762-46325781 MsG0380013834.01.T01:intron 40.0%
! GATTGGGATAAAGGATTGGT+AGG - Chr3:46322781-46322800 MsG0380013834.01.T01:CDS 40.0%
! GGCAATACTCTAGCTTATGT+AGG - Chr3:46324566-46324585 MsG0380013834.01.T01:intron 40.0%
! GTTTCTGAGAGAACGGTAAT+AGG - Chr3:46325166-46325185 MsG0380013834.01.T01:intron 40.0%
! GTTTTTGCTGCAGATGAAAG+AGG - Chr3:46325214-46325233 MsG0380013834.01.T01:intron 40.0%
!! ATATCAAGTAGAGGTGTCTG+TGG + Chr3:46322929-46322948 None:intergenic 40.0%
!! CACTGCTTTTATGAGCAGTT+TGG - Chr3:46322559-46322578 MsG0380013834.01.T01:intron 40.0%
!! GATCAGTTCTCTGAAGCATT+TGG - Chr3:46326569-46326588 MsG0380013834.01.T01:intron 40.0%
!! GTGTTGACACTGGTTTCAAT+TGG - Chr3:46322135-46322154 MsG0380013834.01.T01:intron 40.0%
!! GTTTTAGCACATCAGGTTAG+TGG - Chr3:46326873-46326892 MsG0380013834.01.T01:intron 40.0%
!! TAAGCTAGAGTATTGCCACT+TGG + Chr3:46324563-46324582 None:intergenic 40.0%
!! TATCAAGTAGAGGTGTCTGT+GGG + Chr3:46322928-46322947 None:intergenic 40.0%
!!! CTGATATTTTCTGGAACTGG+TGG - Chr3:46325111-46325130 MsG0380013834.01.T01:intron 40.0%
AAAAACTATCAGCTCGAGGG+GGG - Chr3:46325664-46325683 MsG0380013834.01.T01:intron 45.0%
AACAAGTTTGCAGTGGGAAG+TGG - Chr3:46321415-46321434 MsG0380013834.01.T01:intron 45.0%
AACCCACTCATCAACAGGTT+GGG + Chr3:46322494-46322513 None:intergenic 45.0%
AAGCTCTCGAATTCTTGGAG+GGG - Chr3:46322812-46322831 MsG0380013834.01.T01:intron 45.0%
AATCACGGAACACGACATTC+TGG + Chr3:46325014-46325033 None:intergenic 45.0%
AATCCAACAGGGACAAGAGT+GGG + Chr3:46321037-46321056 None:intergenic 45.0%
AATCCAACCCACTCATCAAC+AGG + Chr3:46322499-46322518 None:intergenic 45.0%
AGACCAAGCTCTCGAATTCT+TGG - Chr3:46322807-46322826 MsG0380013834.01.T01:intron 45.0%
AGTAAAGGGCAAAATTGGCC+TGG + Chr3:46321226-46321245 None:intergenic 45.0%
AGTCTCATGCTAGGAAGATC+AGG + Chr3:46325611-46325630 None:intergenic 45.0%
ATAAAAGCAGTGGATGGGAC+TGG + Chr3:46322551-46322570 None:intergenic 45.0%
ATACCTGACAAAACCCCTAG+AGG + Chr3:46325398-46325417 None:intergenic 45.0%
ATCACGGAACACGACATTCT+GGG + Chr3:46325013-46325032 None:intergenic 45.0%
ATCATACCTCTTGGTGAGCA+TGG - Chr3:46326836-46326855 MsG0380013834.01.T01:intron 45.0%
ATCGTTTCCCACACCATACT+TGG + Chr3:46326612-46326631 None:intergenic 45.0%
ATGTGCTCACCAATGTGCTT+AGG + Chr3:46326199-46326218 None:intergenic 45.0%
CAAGCTCTCGAATTCTTGGA+GGG - Chr3:46322811-46322830 MsG0380013834.01.T01:intron 45.0%
CACATGACGTGATTCAGTTG+AGG - Chr3:46326061-46326080 MsG0380013834.01.T01:intron 45.0%
CAGAGGCTACTCAAATCCAA+AGG + Chr3:46324455-46324474 None:intergenic 45.0%
CAGGGATTGGGATAAAGGAT+TGG - Chr3:46322777-46322796 MsG0380013834.01.T01:CDS 45.0%
CCAATTGGACTTTGAACGCA+TGG + Chr3:46323553-46323572 None:intergenic 45.0%
CCATCCAATCCTGTAGTTTC+AGG + Chr3:46326990-46327009 None:intergenic 45.0%
CCATGCGTTCAAAGTCCAAT+TGG - Chr3:46323550-46323569 MsG0380013834.01.T01:intron 45.0%
CCCAAGAAATTCGAGAGTCT+TGG + Chr3:46322844-46322863 None:intergenic 45.0%
CCTGAAACTACAGGATTGGA+TGG - Chr3:46326987-46327006 MsG0380013834.01.T01:intron 45.0%
CTGCAGATGAAAGAGGAGTT+TGG - Chr3:46325221-46325240 MsG0380013834.01.T01:intron 45.0%
CTGCTCATAAAAGCAGTGGA+TGG + Chr3:46322557-46322576 None:intergenic 45.0%
CTTCCCTGAAACTACAGGAT+TGG - Chr3:46326983-46327002 MsG0380013834.01.T01:intron 45.0%
GAGAGAACGGTAATAGGTGT+GGG - Chr3:46325172-46325191 MsG0380013834.01.T01:intron 45.0%
GCATCAGACAAGCATGACAA+CGG + Chr3:46321109-46321128 None:intergenic 45.0%
GCATCAGTCTTCAAACAGTG+GGG + Chr3:46324290-46324309 None:intergenic 45.0%
GGAACCTTGAAGGATCAGAA+TGG - Chr3:46320824-46320843 MsG0380013834.01.T01:three_prime_UTR 45.0%
GGCAGAAAACAAGTTTGCAG+TGG - Chr3:46321408-46321427 MsG0380013834.01.T01:intron 45.0%
GTACCCATTCTGATCCTTCA+AGG + Chr3:46320831-46320850 None:intergenic 45.0%
GTAGGAACAAAACTGGGACA+TGG + Chr3:46320929-46320948 None:intergenic 45.0%
TAATCCAACAGGGACAAGAG+TGG + Chr3:46321038-46321057 None:intergenic 45.0%
TAGCACATCAGGTTAGTGGT+GGG - Chr3:46326877-46326896 MsG0380013834.01.T01:intron 45.0%
TAGTTACTTCATCCCACGAC+CGG - Chr3:46320662-46320681 MsG0380013834.01.T01:three_prime_UTR 45.0%
TCATGGCATCCCGATAATGT+TGG - Chr3:46323080-46323099 MsG0380013834.01.T01:intron 45.0%
TCTTCTTGCGACAACATCCA+CGG - Chr3:46323994-46324013 MsG0380013834.01.T01:intron 45.0%
TGAGAGAACGGTAATAGGTG+TGG - Chr3:46325171-46325190 MsG0380013834.01.T01:intron 45.0%
TGAGCAATTGGAAGTGGTCA+AGG - Chr3:46327114-46327133 MsG0380013834.01.T01:five_prime_UTR 45.0%
TGGATCAAGATATGGCTCAC+AGG - Chr3:46325444-46325463 MsG0380013834.01.T01:intron 45.0%
TGGTTGTGAGCAATTGGAAG+TGG - Chr3:46327108-46327127 MsG0380013834.01.T01:five_prime_UTR 45.0%
TTAGCACATCAGGTTAGTGG+TGG - Chr3:46326876-46326895 MsG0380013834.01.T01:intron 45.0%
TTCCCACACCATACTTGGAT+TGG + Chr3:46326607-46326626 None:intergenic 45.0%
TTCCTCATGCCTAAGCACAT+TGG - Chr3:46326187-46326206 MsG0380013834.01.T01:intron 45.0%
TTGTCAGGTATCTTGGAGAG+CGG - Chr3:46325407-46325426 MsG0380013834.01.T01:intron 45.0%
! GAACTTTTCACCCTTGGTCT+GGG - Chr3:46320717-46320736 MsG0380013834.01.T01:three_prime_UTR 45.0%
! GTGCTGCTCTTTGTGTTCAA+TGG - Chr3:46320878-46320897 MsG0380013834.01.T01:three_prime_UTR 45.0%
! TACCCAACCTGTTGATGAGT+GGG - Chr3:46322489-46322508 MsG0380013834.01.T01:intron 45.0%
! TCAGGTTAGTGGTGGGAAAA+TGG - Chr3:46326884-46326903 MsG0380013834.01.T01:intron 45.0%
! TGAACTTTTCACCCTTGGTC+TGG - Chr3:46320716-46320735 MsG0380013834.01.T01:three_prime_UTR 45.0%
!! ACAAGGCGTTTTAGCACATC+AGG - Chr3:46326866-46326885 MsG0380013834.01.T01:intron 45.0%
!! AGGGGGGCATTAGTTTCATT+TGG - Chr3:46325680-46325699 MsG0380013834.01.T01:intron 45.0%
!! AGGGGTTTTGTCAGGTATCT+TGG - Chr3:46325400-46325419 MsG0380013834.01.T01:intron 45.0%
!! ATATAGGTGGTGAAAGCACC+AGG + Chr3:46321251-46321270 None:intergenic 45.0%
!! GAAAGCACCAGGGTAGTAAA+GGG + Chr3:46321240-46321259 None:intergenic 45.0%
!! TATAGGTGGTGAAAGCACCA+GGG + Chr3:46321250-46321269 None:intergenic 45.0%
!! TGAAAGCACCAGGGTAGTAA+AGG + Chr3:46321241-46321260 None:intergenic 45.0%
!! TGTTGATGAGTGGGTTGGAT+TGG - Chr3:46322498-46322517 MsG0380013834.01.T01:CDS 45.0%
!! TTTCCTCTAGGGGTTTTGTC+AGG - Chr3:46325392-46325411 MsG0380013834.01.T01:intron 45.0%
!! AAAAAAAAAAAAAAATCATT+GGG - Chr3:46322971-46322990 MsG0380013834.01.T01:CDS 5.0%
!! AAAAAAATTGTAAAATATTA+AGG + Chr3:46323315-46323334 None:intergenic 5.0%
!! AAAAAATTGTAAAATATTAA+GGG + Chr3:46323314-46323333 None:intergenic 5.0%
!! ATAAAATAATAATAATATGT+TGG + Chr3:46321338-46321357 None:intergenic 5.0%
!! TAAAAAAAAAAAAAAATCAT+TGG - Chr3:46322970-46322989 MsG0380013834.01.T01:CDS 5.0%
!! TAAAATAATAATAATATGTT+GGG + Chr3:46321337-46321356 None:intergenic 5.0%
!!! ATTCTTTTTTAAAAATATTT+GGG - Chr3:46324833-46324852 MsG0380013834.01.T01:intron 5.0%
!!! TATTCTTTTTTAAAAATATT+TGG - Chr3:46324832-46324851 MsG0380013834.01.T01:intron 5.0%
AACACGACATTCTGGGCCAA+AGG + Chr3:46325006-46325025 None:intergenic 50.0%
ACATTCTGGGCCAAAGGAGA+AGG + Chr3:46325000-46325019 None:intergenic 50.0%
ATCCAACAGGGACAAGAGTG+GGG + Chr3:46321036-46321055 None:intergenic 50.0%
CAACCCACTCATCAACAGGT+TGG + Chr3:46322495-46322514 None:intergenic 50.0%
CACCAATGTGCTTAGGCATG+AGG + Chr3:46326192-46326211 None:intergenic 50.0%
CATCACGGAGAGGCAAATCA+CGG + Chr3:46325029-46325048 None:intergenic 50.0%
CCAAAGCAACTAGCCGAAAC+TGG + Chr3:46326954-46326973 None:intergenic 50.0%
CCAAGCTCTCGAATTCTTGG+AGG - Chr3:46322810-46322829 MsG0380013834.01.T01:intron 50.0%
CCTCCAAGAATTCGAGAGCT+TGG + Chr3:46322813-46322832 None:intergenic 50.0%
CTTGGACATTCGGAGTCAAG+TGG - Chr3:46324534-46324553 MsG0380013834.01.T01:intron 50.0%
GAGCGGAAGACAGTATCATC+TGG - Chr3:46325424-46325443 MsG0380013834.01.T01:intron 50.0%
GATTTGCCTCTCCGTGATGT+GGG - Chr3:46325030-46325049 MsG0380013834.01.T01:intron 50.0%
GCTACTAGGATGCACTTGCT+TGG - Chr3:46323201-46323220 MsG0380013834.01.T01:intron 50.0%
GGCCAATCCAAGTATGGTGT+GGG - Chr3:46326602-46326621 MsG0380013834.01.T01:intron 50.0%
TGATGTGGGTCCTTCTCCTT+TGG - Chr3:46324987-46325006 MsG0380013834.01.T01:intron 50.0%
TGGCCAATCCAAGTATGGTG+TGG - Chr3:46326601-46326620 MsG0380013834.01.T01:intron 50.0%
TTGCGACAACATCCACGGAT+GGG - Chr3:46323999-46324018 MsG0380013834.01.T01:intron 50.0%
TTGGGTACAGTTGAGCCCAT+GGG + Chr3:46322437-46322456 None:intergenic 50.0%
! CAACCTGTTGATGAGTGGGT+TGG - Chr3:46322493-46322512 MsG0380013834.01.T01:intron 50.0%
! CCAGTTTCGGCTAGTTGCTT+TGG - Chr3:46326951-46326970 MsG0380013834.01.T01:intron 50.0%
! GTACCCAACCTGTTGATGAG+TGG - Chr3:46322488-46322507 MsG0380013834.01.T01:intron 50.0%
! TATGCTGCCTGTGTTGACAC+TGG - Chr3:46322125-46322144 MsG0380013834.01.T01:intron 50.0%
! TGATTTGCCTCTCCGTGATG+TGG - Chr3:46325029-46325048 MsG0380013834.01.T01:intron 50.0%
!! AGTAGAGGTGTCTGTGGGTT+AGG + Chr3:46322923-46322942 None:intergenic 50.0%
AAGGCCAGCGTTTAAGAGCG+CGG + Chr3:46321744-46321763 None:intergenic 55.0%
ACACAGGCACTCACGAGTTC+CGG + Chr3:46320684-46320703 None:intergenic 55.0%
CATGCCCAATCAATGCGGCT+GGG - Chr3:46325284-46325303 MsG0380013834.01.T01:intron 55.0%
CTGGGGTTTGATCCTCTACC+AGG - Chr3:46321205-46321224 MsG0380013834.01.T01:intron 55.0%
CTTGCGACAACATCCACGGA+TGG - Chr3:46323998-46324017 MsG0380013834.01.T01:intron 55.0%
GAGCAGCACGGTTTAGCCTA+AGG + Chr3:46320867-46320886 None:intergenic 55.0%
GCAACAGTCACCCAGACCAA+GGG + Chr3:46320730-46320749 None:intergenic 55.0%
GCAACTAGCCGAAACTGGCA+AGG + Chr3:46326949-46326968 None:intergenic 55.0%
GGAGTCAAGTGGTCACCAAG+TGG - Chr3:46324545-46324564 MsG0380013834.01.T01:intron 55.0%
GTGGATGCTGACCCACATCA+CGG + Chr3:46325044-46325063 None:intergenic 55.0%
GTTACCGCGCTCTTAAACGC+TGG - Chr3:46321737-46321756 MsG0380013834.01.T01:intron 55.0%
GTTGGGTACAGTTGAGCCCA+TGG + Chr3:46322438-46322457 None:intergenic 55.0%
TACTCTGCACTTCCCATCCG+TGG + Chr3:46324014-46324033 None:intergenic 55.0%
TGGCCCATGCCCAATCAATG+CGG - Chr3:46325279-46325298 MsG0380013834.01.T01:intron 55.0%
TTCCCCACTCTTGTCCCTGT+TGG - Chr3:46321031-46321050 MsG0380013834.01.T01:intron 55.0%
! GGGCAAAATTGGCCTGGTAG+AGG + Chr3:46321220-46321239 None:intergenic 55.0%
! GTTTGCTAACCCACCTGCAG+AGG + Chr3:46323022-46323041 None:intergenic 55.0%
!! CAGCCGCATTGATTGGGCAT+GGG + Chr3:46325285-46325304 None:intergenic 55.0%
!! TTGGCCCAGCCGCATTGATT+GGG + Chr3:46325291-46325310 None:intergenic 55.0%
CACTCACGAGTTCCGGTCGT+GGG + Chr3:46320677-46320696 None:intergenic 60.0%
CCATGCCCAATCAATGCGGC+TGG - Chr3:46325283-46325302 MsG0380013834.01.T01:intron 60.0%
GGCAACAGTCACCCAGACCA+AGG + Chr3:46320731-46320750 None:intergenic 60.0%
TGCTGACCCACATCACGGAG+AGG + Chr3:46325039-46325058 None:intergenic 60.0%
! GCGCTCTTAAACGCTGGCCT+TGG - Chr3:46321743-46321762 MsG0380013834.01.T01:intron 60.0%
! GTTGGCCCAGCCGCATTGAT+TGG + Chr3:46325292-46325311 None:intergenic 60.0%
!! CCAGCCGCATTGATTGGGCA+TGG + Chr3:46325286-46325305 None:intergenic 60.0%
GCACTCACGAGTTCCGGTCG+TGG + Chr3:46320678-46320697 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 46320614 46327346 46320614 ID=MsG0380013834.01;Name=MsG0380013834.01
Chr3 mRNA 46320614 46327346 46320614 ID=MsG0380013834.01.T01;Parent=MsG0380013834.01;Name=MsG0380013834.01.T01;_AED=0.44;_eAED=0.47;_QI=225|0.6|0.63|1|1|1|11|285|274
Chr3 exon 46320614 46320960 46320614 ID=MsG0380013834.01.T01:exon:6505;Parent=MsG0380013834.01.T01
Chr3 exon 46321073 46321128 46321073 ID=MsG0380013834.01.T01:exon:6504;Parent=MsG0380013834.01.T01
Chr3 exon 46321279 46321385 46321279 ID=MsG0380013834.01.T01:exon:6503;Parent=MsG0380013834.01.T01
Chr3 exon 46322495 46322546 46322495 ID=MsG0380013834.01.T01:exon:6502;Parent=MsG0380013834.01.T01
Chr3 exon 46322604 46322803 46322604 ID=MsG0380013834.01.T01:exon:6501;Parent=MsG0380013834.01.T01
Chr3 exon 46322913 46323001 46322913 ID=MsG0380013834.01.T01:exon:6500;Parent=MsG0380013834.01.T01
Chr3 exon 46323373 46323454 46323373 ID=MsG0380013834.01.T01:exon:6499;Parent=MsG0380013834.01.T01
Chr3 exon 46325764 46325992 46325764 ID=MsG0380013834.01.T01:exon:6498;Parent=MsG0380013834.01.T01
Chr3 exon 46326478 46326547 46326478 ID=MsG0380013834.01.T01:exon:6497;Parent=MsG0380013834.01.T01
Chr3 exon 46327050 46327144 46327050 ID=MsG0380013834.01.T01:exon:6496;Parent=MsG0380013834.01.T01
Chr3 exon 46327339 46327346 46327339 ID=MsG0380013834.01.T01:exon:6495;Parent=MsG0380013834.01.T01
Chr3 five_prime_UTR 46327339 46327346 46327339 ID=MsG0380013834.01.T01:five_prime_utr;Parent=MsG0380013834.01.T01
Chr3 five_prime_UTR 46327050 46327144 46327050 ID=MsG0380013834.01.T01:five_prime_utr;Parent=MsG0380013834.01.T01
Chr3 five_prime_UTR 46326478 46326547 46326478 ID=MsG0380013834.01.T01:five_prime_utr;Parent=MsG0380013834.01.T01
Chr3 five_prime_UTR 46325941 46325992 46325941 ID=MsG0380013834.01.T01:five_prime_utr;Parent=MsG0380013834.01.T01
Chr3 CDS 46325764 46325940 46325764 ID=MsG0380013834.01.T01:cds;Parent=MsG0380013834.01.T01
Chr3 CDS 46323373 46323454 46323373 ID=MsG0380013834.01.T01:cds;Parent=MsG0380013834.01.T01
Chr3 CDS 46322913 46323001 46322913 ID=MsG0380013834.01.T01:cds;Parent=MsG0380013834.01.T01
Chr3 CDS 46322604 46322803 46322604 ID=MsG0380013834.01.T01:cds;Parent=MsG0380013834.01.T01
Chr3 CDS 46322495 46322546 46322495 ID=MsG0380013834.01.T01:cds;Parent=MsG0380013834.01.T01
Chr3 CDS 46321279 46321385 46321279 ID=MsG0380013834.01.T01:cds;Parent=MsG0380013834.01.T01
Chr3 CDS 46321073 46321128 46321073 ID=MsG0380013834.01.T01:cds;Parent=MsG0380013834.01.T01
Chr3 CDS 46320899 46320960 46320899 ID=MsG0380013834.01.T01:cds;Parent=MsG0380013834.01.T01
Chr3 three_prime_UTR 46320614 46320898 46320614 ID=MsG0380013834.01.T01:three_prime_utr;Parent=MsG0380013834.01.T01
Gene Sequence

>MsG0380013834.01.T01

ATGAAGAATCTCATGGACCATTGCGAAGAGAAATTGATAGATCATTTAGATGACAAGAAAGTTTTTGAAAATAATAACAAAAGCGTCAGTCATTATAGCAATCTATATGCTGCCTGTGTTGACACTGGTTTCAATTGGCTTACTTTTGTCATTAATTGTTTGTTGCTTTTTAAACTTTTGATTGTTCAGCTTGATCTCTCATCATCTTGGACATTCGGAGTCAAGTGGTCACCAAGTGGCAATACTCTAGCTTATGTAGGTCATAATTCAATGATATATTTTGTTGATGATGTGGGTCCTTCTCCTTTGGCCCAGAATGTCGTGTTCCGTGATTTGCCTCTCCGTGATGTATTATTTGTTTCTGAGAGAACGGTAATAGGTGTGGGATATGATTGTAACCCAATGGTTTTTGCTGCAGATGAAAGAGGAGTTTGGTATGTAGAAATTCAGATATTTGTCTTTCTAAGGTCTGGCCCATGCCCAATCAATGCGGCTGGGCCAACTTGTTTTGAATTCTCTTTGCAGGTGGAAGAGAAGTTAGAATTTTGGTATCTTGGAGAGCGGAAGACAGTATCATCTGGATCAAGATATGGCTCACAGTTCTCTGAAGCATTTGGGAAGTTTTATGGCCAATCCAAGTATGGTGTGGGAAACGATGCTGTTGAAACTTCAAAAACACGTGGAGCAGTTCATGATAACTGTATAAATTCTATCATACCTCTTGGTGAGCATGGAATATTGACAAGGCGTTTTAGCACATCAGGATTGGATGGAAGAATTGCTGTATGGGATTTGGAAAATGAGCAGGACCTTCTTGAATTATAA

Protein sequence

>MsG0380013834.01.T01

MKNLMDHCEEKLIDHLDDKKVFENNNKSVSHYSNLYAACVDTGFNWLTFVINCLLLFKLLIVQLDLSSSWTFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVVFRDLPLRDVLFVSERTVIGVGYDCNPMVFAADERGVWYVEIQIFVFLRSGPCPINAAGPTCFEFSLQVEEKLEFWYLGERKTVSSGSRYGSQFSEAFGKFYGQSKYGVGNDAVETSKTRGAVHDNCINSIIPLGEHGILTRRFSTSGLDGRIAVWDLENEQDLLEL*