Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047790.01.T01 | KEH24676.1 | 93.976 | 249 | 12 | 1 | 1 | 249 | 1 | 246 | 3.69E-127 | 375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047790.01.T01 | O80567 | 70.229 | 131 | 39 | 0 | 119 | 249 | 195 | 325 | 1.21E-58 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047790.01.T01 | A0A072U5M9 | 93.976 | 249 | 12 | 1 | 1 | 249 | 1 | 246 | 1.76e-127 | 375 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047790.01 | MsG0180000055.01 | -0.817618 | 3.003488e-52 | 2.198051e-49 |
| MsG0080047790.01 | MsG0180000400.01 | 0.831711 | 1.429470e-55 | 1.564045e-52 |
| MsG0080047790.01 | MsG0180000611.01 | -0.831257 | 1.849790e-55 | 1.996403e-52 |
| MsG0080047790.01 | MsG0180001002.01 | -0.800148 | 1.650940e-48 | 7.630744e-46 |
| MsG0080047790.01 | MsG0180001020.01 | -0.815272 | 1.006636e-51 | 6.908604e-49 |
| MsG0080047790.01 | MsG0180001576.01 | 0.822772 | 1.981138e-53 | 1.674105e-50 |
| MsG0080047790.01 | MsG0180002750.01 | 0.838054 | 3.611372e-57 | 4.780888e-54 |
| MsG0080047790.01 | MsG0180004486.01 | -0.802448 | 5.583852e-49 | 2.735932e-46 |
| MsG0080047790.01 | MsG0180004824.01 | -0.830109 | 3.533027e-55 | 3.687018e-52 |
| MsG0080047790.01 | MsG0180004843.01 | -0.850171 | 2.017326e-60 | 3.917264e-57 |
| MsG0080047790.01 | MsG0180005049.01 | -0.821583 | 3.738367e-53 | 3.053572e-50 |
| MsG0080047790.01 | MsG0180005268.01 | -0.806303 | 8.782542e-50 | 4.750519e-47 |
| MsG0080047790.01 | MsG0180005330.01 | 0.805539 | 1.271591e-49 | 6.744562e-47 |
| MsG0080047790.01 | MsG0180005493.01 | -0.802910 | 4.482915e-49 | 2.222564e-46 |
| MsG0080047790.01 | MsG0180006025.01 | -0.806315 | 8.730192e-50 | 4.723657e-47 |
| MsG0080047790.01 | MsG0180006104.01 | -0.804818 | 1.799513e-49 | 9.370473e-47 |
| MsG0080047790.01 | MsG0280006906.01 | -0.814121 | 1.810645e-51 | 1.204489e-48 |
| MsG0080047790.01 | MsG0280007165.01 | 0.840076 | 1.080815e-57 | 1.522516e-54 |
| MsG0080047790.01 | MsG0280007441.01 | -0.815973 | 7.024594e-52 | 4.914610e-49 |
| MsG0080047790.01 | MsG0280007484.01 | -0.805385 | 1.369511e-49 | 7.235371e-47 |
| MsG0080047790.01 | MsG0280007491.01 | -0.812619 | 3.869828e-51 | 2.472288e-48 |
| MsG0080047790.01 | MsG0280007710.01 | -0.813724 | 2.214585e-51 | 1.457490e-48 |
| MsG0080047790.01 | MsG0280009676.01 | 0.803212 | 3.881985e-49 | 1.939479e-46 |
| MsG0080047790.01 | MsG0280010560.01 | -0.851295 | 9.742735e-61 | 1.962925e-57 |
| MsG0080047790.01 | MsG0280011043.01 | -0.841235 | 5.372469e-58 | 7.843455e-55 |
| MsG0080047790.01 | MsG0380014225.01 | 0.841091 | 5.864651e-58 | 8.523479e-55 |
| MsG0080047790.01 | MsG0380014908.01 | -0.821454 | 4.004108e-53 | 3.258923e-50 |
| MsG0080047790.01 | MsG0380015818.01 | -0.808501 | 3.002914e-50 | 1.719849e-47 |
| MsG0080047790.01 | MsG0380016118.01 | 0.846091 | 2.700836e-59 | 4.596497e-56 |
| MsG0080047790.01 | MsG0380016347.01 | 0.800117 | 1.675461e-48 | 7.737869e-46 |
| MsG0080047790.01 | MsG0380017229.01 | -0.805006 | 1.644308e-49 | 8.603070e-47 |
| MsG0080047790.01 | MsG0480018292.01 | -0.839969 | 1.152504e-57 | 1.618112e-54 |
| MsG0080047790.01 | MsG0480019404.01 | -0.820602 | 6.288225e-53 | 4.997864e-50 |
| MsG0080047790.01 | MsG0480019785.01 | -0.808017 | 3.806876e-50 | 2.152696e-47 |
| MsG0080047790.01 | MsG0480019984.01 | 0.818958 | 1.493618e-52 | 1.134318e-49 |
| MsG0080047790.01 | MsG0480020591.01 | -0.809326 | 1.999626e-50 | 1.170573e-47 |
| MsG0080047790.01 | MsG0480020720.01 | -0.812239 | 4.685887e-51 | 2.963532e-48 |
| MsG0080047790.01 | MsG0480021490.01 | 0.846135 | 2.627256e-59 | 4.477370e-56 |
| MsG0080047790.01 | MsG0480021896.01 | 0.816207 | 6.227235e-52 | 4.384945e-49 |
| MsG0080047790.01 | MsG0480022292.01 | -0.804120 | 2.515462e-49 | 1.286458e-46 |
| MsG0080047790.01 | MsG0480023055.01 | -0.809237 | 2.089872e-50 | 1.220514e-47 |
| MsG0080047790.01 | MsG0480023859.01 | 0.804230 | 2.386784e-49 | 1.224013e-46 |
| MsG0080047790.01 | MsG0580024650.01 | 0.837577 | 4.789421e-57 | 6.248114e-54 |
| MsG0080047790.01 | MsG0580025042.01 | -0.808835 | 2.548213e-50 | 1.472148e-47 |
| MsG0080047790.01 | MsG0580025788.01 | 0.819403 | 1.183125e-52 | 9.095351e-50 |
| MsG0080047790.01 | MsG0580025986.01 | -0.857547 | 1.515783e-62 | 3.754909e-59 |
| MsG0080047790.01 | MsG0580026225.01 | -0.800509 | 1.394272e-48 | 6.503663e-46 |
| MsG0080047790.01 | MsG0580027441.01 | -0.812115 | 4.986537e-51 | 3.142934e-48 |
| MsG0080047790.01 | MsG0580028613.01 | 0.832517 | 9.034059e-56 | 1.012131e-52 |
| MsG0080047790.01 | MsG0580029999.01 | 0.808283 | 3.342096e-50 | 1.903212e-47 |
| MsG0080047790.01 | MsG0580030003.01 | -0.804710 | 1.895721e-49 | 9.843311e-47 |
| MsG0080047790.01 | MsG0680031446.01 | 0.840902 | 6.574144e-58 | 9.500099e-55 |
| MsG0080047790.01 | MsG0680031699.01 | -0.803236 | 3.837963e-49 | 1.918653e-46 |
| MsG0080047790.01 | MsG0680031805.01 | 0.848724 | 5.106780e-60 | 9.460037e-57 |
| MsG0080047790.01 | MsG0680032075.01 | -0.824867 | 6.396709e-54 | 5.736767e-51 |
| MsG0080047790.01 | MsG0680034037.01 | -0.815643 | 8.321282e-52 | 5.769801e-49 |
| MsG0080047790.01 | MsG0780036635.01 | -0.802933 | 4.433862e-49 | 2.199463e-46 |
| MsG0080047790.01 | MsG0780039777.01 | -0.801744 | 7.793200e-49 | 3.750491e-46 |
| MsG0080047790.01 | MsG0780040176.01 | -0.826652 | 2.411878e-54 | 2.275698e-51 |
| MsG0080047790.01 | MsG0780040182.01 | -0.818165 | 2.260061e-52 | 1.679011e-49 |
| MsG0080047790.01 | MsG0780040254.01 | -0.810302 | 1.233530e-50 | 7.408436e-48 |
| MsG0080047790.01 | MsG0780040375.01 | 0.835299 | 1.819791e-56 | 2.216377e-53 |
| MsG0080047790.01 | MsG0780041006.01 | -0.834117 | 3.607864e-56 | 4.240458e-53 |
| MsG0080047790.01 | MsG0780041258.01 | -0.812495 | 4.119559e-51 | 2.623302e-48 |
| MsG0080047790.01 | MsG0880043804.01 | -0.802511 | 5.419449e-49 | 2.659598e-46 |
| MsG0080047790.01 | MsG0880044062.01 | 0.830740 | 2.476625e-55 | 2.632647e-52 |
| MsG0080047790.01 | MsG0880044389.01 | 0.821430 | 4.053855e-53 | 3.297410e-50 |
| MsG0080047790.01 | MsG0880045381.01 | -0.804370 | 2.232013e-49 | 1.148832e-46 |
| MsG0080047790.01 | MsG0880045897.01 | 0.821942 | 3.087697e-53 | 2.548004e-50 |
| MsG0080047790.01 | MsG0880045982.01 | 0.820906 | 5.353311e-53 | 4.291402e-50 |
| MsG0080047790.01 | MsG0880046289.01 | 0.822844 | 1.906331e-53 | 1.614139e-50 |
| MsG0080047790.01 | MsG0880046384.01 | 0.800034 | 1.741938e-48 | 8.028001e-46 |
| MsG0080047790.01 | MsG0880046561.01 | -0.828744 | 7.582432e-55 | 7.603206e-52 |
| MsG0080047790.01 | MsG0880046877.01 | 0.814914 | 1.208606e-51 | 8.213954e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047790.01.T01 | MTR_7g117595 | 93.976 | 249 | 12 | 1 | 1 | 249 | 1 | 246 | 4.47e-131 | 375 |
| MsG0080047790.01.T01 | MTR_7g117595 | 93.976 | 249 | 12 | 1 | 1 | 249 | 1 | 246 | 1.52e-127 | 369 |
| MsG0080047790.01.T01 | MTR_7g117595 | 93.574 | 249 | 13 | 1 | 1 | 249 | 1 | 246 | 2.08e-127 | 368 |
| MsG0080047790.01.T01 | MTR_4g086860 | 54.615 | 130 | 59 | 0 | 118 | 247 | 100 | 229 | 8.59e-42 | 148 |
| MsG0080047790.01.T01 | MTR_2g019620 | 34.158 | 202 | 128 | 2 | 45 | 246 | 36 | 232 | 2.41e-30 | 117 |
| MsG0080047790.01.T01 | MTR_8g075120 | 33.750 | 160 | 97 | 4 | 39 | 195 | 256 | 409 | 6.73e-13 | 68.6 |
| MsG0080047790.01.T01 | MTR_1g026890 | 34.343 | 99 | 52 | 2 | 109 | 194 | 2 | 100 | 1.88e-11 | 64.3 |
| MsG0080047790.01.T01 | MTR_5g057940 | 68.293 | 41 | 13 | 0 | 207 | 247 | 56 | 96 | 4.38e-11 | 60.1 |
| MsG0080047790.01.T01 | MTR_3g114450 | 38.961 | 77 | 45 | 2 | 121 | 197 | 370 | 444 | 4.86e-11 | 62.8 |
| MsG0080047790.01.T01 | MTR_5g088200 | 40.260 | 77 | 44 | 1 | 121 | 197 | 318 | 392 | 5.24e-11 | 63.2 |
| MsG0080047790.01.T01 | MTR_3g114340 | 38.961 | 77 | 45 | 2 | 121 | 197 | 300 | 374 | 5.25e-11 | 62.8 |
| MsG0080047790.01.T01 | MTR_8g071890 | 66.667 | 42 | 14 | 0 | 207 | 248 | 91 | 132 | 5.40e-11 | 60.5 |
| MsG0080047790.01.T01 | MTR_5g057940 | 66.667 | 42 | 14 | 0 | 207 | 248 | 56 | 97 | 6.98e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047790.01.T01 | AT2G43970 | 70.229 | 131 | 39 | 0 | 119 | 249 | 195 | 325 | 1.04e-59 | 197 |
| MsG0080047790.01.T01 | AT2G43970 | 70.229 | 131 | 39 | 0 | 119 | 249 | 195 | 325 | 1.23e-59 | 198 |
| MsG0080047790.01.T01 | AT3G19090 | 36.585 | 246 | 114 | 3 | 38 | 247 | 35 | 274 | 8.93e-41 | 146 |
| MsG0080047790.01.T01 | AT3G19090 | 32.967 | 273 | 114 | 4 | 38 | 247 | 35 | 301 | 2.38e-35 | 132 |
| MsG0080047790.01.T01 | AT5G46250 | 38.562 | 153 | 88 | 3 | 115 | 263 | 101 | 251 | 5.16e-29 | 112 |
| MsG0080047790.01.T01 | AT5G46250 | 38.562 | 153 | 88 | 3 | 115 | 263 | 101 | 251 | 5.21e-29 | 112 |
| MsG0080047790.01.T01 | AT5G46250 | 39.333 | 150 | 85 | 3 | 118 | 263 | 104 | 251 | 1.01e-28 | 113 |
| MsG0080047790.01.T01 | AT4G32720 | 28.777 | 139 | 85 | 2 | 115 | 239 | 8 | 146 | 4.85e-13 | 68.9 |
| MsG0080047790.01.T01 | AT4G32720 | 28.777 | 139 | 85 | 2 | 115 | 239 | 8 | 146 | 5.18e-13 | 68.6 |
Find 75 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATCTTACCAAAACCTTC+TGG | 0.246675 | contig102end:-35084 | None:intergenic |
| TGCATCTTTCAATAAGATTA+AGG | 0.274182 | contig102end:+35353 | MsG0080047790.01.T01:CDS |
| AAGCAGACGAAGTCCATTAT+TGG | 0.315442 | contig102end:-36289 | None:intergenic |
| CCTCAAAACATTTGCAAGTT+GGG | 0.319825 | contig102end:-35394 | None:intergenic |
| AACAAAGACCCAGAAGGTTT+TGG | 0.327844 | contig102end:+35075 | MsG0080047790.01.T01:CDS |
| AAAGATGCAACAACGGATAT+TGG | 0.359403 | contig102end:-35339 | None:intergenic |
| CGTGGGGTGGGCACAAACTC+TGG | 0.361092 | contig102end:-34611 | None:intergenic |
| GAGGAGGCGGCGGTACTAAT+AGG | 0.375234 | contig102end:-34634 | None:intergenic |
| CTCCAGGTAGTTAGTGAAGA+TGG | 0.389456 | contig102end:+35558 | MsG0080047790.01.T01:intron |
| TGAGGTTTGGCTTTGGAAGA+AGG | 0.392624 | contig102end:-34797 | None:intergenic |
| CCGCCTCAAACATCCAATAA+TGG | 0.403615 | contig102end:+36276 | MsG0080047790.01.T01:CDS |
| GTTGGGAGTGGCTGGTTATG+AGG | 0.409727 | contig102end:-35377 | None:intergenic |
| TTATCTTACCAAAACCTTCT+GGG | 0.411643 | contig102end:-35083 | None:intergenic |
| TGATGATGTAGCGGAGGAGG+AGG | 0.414278 | contig102end:-34653 | None:intergenic |
| AGATGATGATGTAGCGGAGG+AGG | 0.418535 | contig102end:-34656 | None:intergenic |
| CGTCGTCGTCATCTCTTTCA+AGG | 0.422200 | contig102end:+34555 | MsG0080047790.01.T01:CDS |
| TCTTCATGTCAGACTCGGTT+GGG | 0.430379 | contig102end:-35605 | None:intergenic |
| ATCGGAATGAGGTTTGGCTT+TGG | 0.436218 | contig102end:-34804 | None:intergenic |
| TTGTTCATCGGAATGAGGTT+TGG | 0.443583 | contig102end:-34810 | None:intergenic |
| ATTTGCAAGTTGGGAGTGGC+TGG | 0.450222 | contig102end:-35385 | None:intergenic |
| TTGGAAGAAGGAGTGTGCTC+TGG | 0.458505 | contig102end:-34785 | None:intergenic |
| TGATGATGTGGTGGTGGTGG+TGG | 0.467390 | contig102end:-34689 | None:intergenic |
| CTCTTCATGTCAGACTCGGT+TGG | 0.473463 | contig102end:-35606 | None:intergenic |
| TCCTCAAAACATTTGCAAGT+TGG | 0.475112 | contig102end:-35395 | None:intergenic |
| TTCTGATGACAATGATCGTC+GGG | 0.478445 | contig102end:-35789 | None:intergenic |
| CGGTACTAATAGGCGTGGGG+TGG | 0.484583 | contig102end:-34624 | None:intergenic |
| GATGTTACCTTGTTATGTAA+AGG | 0.487000 | contig102end:-36338 | None:intergenic |
| TCATCATCCTCATCATCATC+AGG | 0.488230 | contig102end:+34712 | MsG0080047790.01.T01:CDS |
| TTGGGAGTGGCTGGTTATGA+GGG | 0.490443 | contig102end:-35376 | None:intergenic |
| ATTGGATGTTTGAGGCGGAC+AGG | 0.492043 | contig102end:-36271 | None:intergenic |
| AGTCCATTATTGGATGTTTG+AGG | 0.495631 | contig102end:-36279 | None:intergenic |
| TGATGATGATGTGGTGGTGG+TGG | 0.496418 | contig102end:-34692 | None:intergenic |
| ACTTCGTCTGCTTCTAGATC+GGG | 0.497084 | contig102end:+36299 | MsG0080047790.01.T01:CDS |
| TCTAGATCGGGAAAAGTTGA+TGG | 0.498191 | contig102end:+36311 | MsG0080047790.01.T01:CDS |
| TTATTTCAGTGATTTAAACT+TGG | 0.500064 | contig102end:+35023 | MsG0080047790.01.T01:CDS |
| TTGTCATCAGAATCTTATGA+AGG | 0.509136 | contig102end:+35800 | MsG0080047790.01.T01:CDS |
| GATGACGACGACGATGATGA+TGG | 0.512490 | contig102end:-34545 | None:intergenic |
| CTGACGGCGAGATCACTACT+TGG | 0.512581 | contig102end:-34520 | None:intergenic |
| GACTTCGTCTGCTTCTAGAT+CGG | 0.515831 | contig102end:+36298 | MsG0080047790.01.T01:CDS |
| AGCGGAGGAGGAGGAGGCGG+CGG | 0.520346 | contig102end:-34644 | None:intergenic |
| TGATGTAGCGGAGGAGGAGG+AGG | 0.521593 | contig102end:-34650 | None:intergenic |
| AGAAGATGATGATGTAGCGG+AGG | 0.525562 | contig102end:-34659 | None:intergenic |
| TGTAGCGGAGGAGGAGGAGG+CGG | 0.526591 | contig102end:-34647 | None:intergenic |
| AAACATTTGCAAGTTGGGAG+TGG | 0.531969 | contig102end:-35389 | None:intergenic |
| GCGGCGGTACTAATAGGCGT+GGG | 0.540084 | contig102end:-34628 | None:intergenic |
| TCCAGGTAGTTAGTGAAGAT+GGG | 0.547894 | contig102end:+35559 | MsG0080047790.01.T01:intron |
| ATGTTTGAGGCGGACAGGTA+CGG | 0.550213 | contig102end:-36266 | None:intergenic |
| TGAGGTTGTTCATCGGAATG+AGG | 0.552368 | contig102end:-34815 | None:intergenic |
| TCTGGCTGCTCAACTTCTTG+AGG | 0.552500 | contig102end:-34767 | None:intergenic |
| TGACGGCGAGATCACTACTT+GGG | 0.554675 | contig102end:-34519 | None:intergenic |
| TAAAGAAGATGATGATGTAG+CGG | 0.555073 | contig102end:-34662 | None:intergenic |
| TGATGATGATGATGTGGTGG+TGG | 0.559127 | contig102end:-34695 | None:intergenic |
| GGTACTAATAGGCGTGGGGT+GGG | 0.561854 | contig102end:-34623 | None:intergenic |
| CTTCATGTCAGACTCGGTTG+GGG | 0.567891 | contig102end:-35604 | None:intergenic |
| ACGGCGAGATCACTACTTGG+GGG | 0.576200 | contig102end:-34517 | None:intergenic |
| GTAGCTCTTCATGTCAGACT+CGG | 0.582555 | contig102end:-35610 | None:intergenic |
| GACGATGATGATGGATCTGA+CGG | 0.582742 | contig102end:-34536 | None:intergenic |
| TGGCATACCTTTACATAACA+AGG | 0.584359 | contig102end:+36331 | MsG0080047790.01.T01:CDS |
| GATGAACCTCATCAAATGAT+CGG | 0.586359 | contig102end:-35052 | None:intergenic |
| CGGCGAGATCACTACTTGGG+GGG | 0.596883 | contig102end:-34516 | None:intergenic |
| TTTGTGATGAGGTTGTTCAT+CGG | 0.597803 | contig102end:-34822 | None:intergenic |
| GATGACAATGATCGTCGGGT+AGG | 0.599393 | contig102end:-35785 | None:intergenic |
| ATTCTGATGACAATGATCGT+CGG | 0.601582 | contig102end:-35790 | None:intergenic |
| GGCTGCTCAACTTCTTGAGG+AGG | 0.601820 | contig102end:-34764 | None:intergenic |
| GGCGGCGGTACTAATAGGCG+TGG | 0.602288 | contig102end:-34629 | None:intergenic |
| CTTATTGAAAGATGCAACAA+CGG | 0.610319 | contig102end:-35346 | None:intergenic |
| CTACTACCGATCATTTGATG+AGG | 0.614726 | contig102end:+35046 | MsG0080047790.01.T01:CDS |
| GACGGCGAGATCACTACTTG+GGG | 0.623843 | contig102end:-34518 | None:intergenic |
| AATGGCGGAAGAAGAAGAGT+CGG | 0.627352 | contig102end:+34484 | None:intergenic |
| GAGGATATTGATGATGAGAG+CGG | 0.628630 | contig102end:-34745 | None:intergenic |
| CCATTATTGGATGTTTGAGG+CGG | 0.636750 | contig102end:-36276 | None:intergenic |
| TTCATCAACAAAGACCCAGA+AGG | 0.651463 | contig102end:+35069 | MsG0080047790.01.T01:CDS |
| TGAACCACCTGATGATGATG+AGG | 0.668556 | contig102end:-34719 | None:intergenic |
| TCATCCTCATCATCATCAGG+TGG | 0.675367 | contig102end:+34715 | MsG0080047790.01.T01:CDS |
| CGGCGGTACTAATAGGCGTG+GGG | 0.695519 | contig102end:-34627 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATATAAAAAAAAAAA+AGG | - | contig102end:35465-35484 | None:intergenic | 0.0% |
| !! | TTATTTCAGTGATTTAAACT+TGG | + | contig102end:35023-35042 | MsG0080047790.01.T01:CDS | 20.0% |
| !!! | TTGTATTTTGCAATCTTTTT+TGG | + | contig102end:35736-35755 | MsG0080047790.01.T01:intron | 20.0% |
| ! | CATCAAGAAATTCTATTGAT+GGG | + | contig102end:35713-35732 | MsG0080047790.01.T01:intron | 25.0% |
| ! | TCATCAAGAAATTCTATTGA+TGG | + | contig102end:35712-35731 | MsG0080047790.01.T01:intron | 25.0% |
| ! | TGCATCTTTCAATAAGATTA+AGG | + | contig102end:35353-35372 | MsG0080047790.01.T01:CDS | 25.0% |
| !! | CTTATAATTCAAAGTTTTGC+AGG | - | contig102end:36205-36224 | None:intergenic | 25.0% |
| !! | TGTTTCAAAATTTTGTGATG+AGG | - | contig102end:34836-34855 | None:intergenic | 25.0% |
| !! | TTTGAAGTGTAATTCATGTT+TGG | + | contig102end:35986-36005 | MsG0080047790.01.T01:intron | 25.0% |
| !!! | AACACTGAATTTTGTTGTAT+AGG | + | contig102end:35264-35283 | MsG0080047790.01.T01:intron | 25.0% |
| !!! | TCATCACAAAATTTTGAAAC+AGG | + | contig102end:34835-34854 | MsG0080047790.01.T01:CDS | 25.0% |
| AAAATTAAGTGCATTCACGT+TGG | - | contig102end:35943-35962 | None:intergenic | 30.0% | |
| AAATAAGACTATTACCAGCT+TGG | - | contig102end:36065-36084 | None:intergenic | 30.0% | |
| ATTATCTTACCAAAACCTTC+TGG | - | contig102end:35087-35106 | None:intergenic | 30.0% | |
| CATGGAATGAAGATGAAATT+AGG | - | contig102end:34873-34892 | None:intergenic | 30.0% | |
| CTTATTGAAAGATGCAACAA+CGG | - | contig102end:35349-35368 | None:intergenic | 30.0% | |
| CTTCTTGTCTAACTATTGTT+TGG | + | contig102end:36091-36110 | MsG0080047790.01.T01:intron | 30.0% | |
| TGAGTAGAATGAAATGTTTG+AGG | - | contig102end:35154-35173 | None:intergenic | 30.0% | |
| TTATCTTACCAAAACCTTCT+GGG | - | contig102end:35086-35105 | None:intergenic | 30.0% | |
| TTGTCATCAGAATCTTATGA+AGG | + | contig102end:35800-35819 | MsG0080047790.01.T01:CDS | 30.0% | |
| ! | TAAAGAAGATGATGATGTAG+CGG | - | contig102end:34665-34684 | None:intergenic | 30.0% |
| !! | CTGAATTTTGTTGTATAGGA+TGG | + | contig102end:35268-35287 | MsG0080047790.01.T01:intron | 30.0% |
| !!! | ACAAACTTTTCACTGACTTT+AGG | + | contig102end:35648-35667 | MsG0080047790.01.T01:intron | 30.0% |
| AAAGATGCAACAACGGATAT+TGG | - | contig102end:35342-35361 | None:intergenic | 35.0% | |
| ACATTTCATTCTACTCACTC+TGG | + | contig102end:35157-35176 | MsG0080047790.01.T01:intron | 35.0% | |
| AGTCCATTATTGGATGTTTG+AGG | - | contig102end:36282-36301 | None:intergenic | 35.0% | |
| ATTCTGATGACAATGATCGT+CGG | - | contig102end:35793-35812 | None:intergenic | 35.0% | |
| CCTCAAAACATTTGCAAGTT+GGG | - | contig102end:35397-35416 | None:intergenic | 35.0% | |
| CTGATAATATTATCCTCCCT+CGG | - | contig102end:35215-35234 | None:intergenic | 35.0% | |
| GAAGATGAAATTAGGCAAGT+TGG | - | contig102end:34865-34884 | None:intergenic | 35.0% | |
| GATGAACCTCATCAAATGAT+CGG | - | contig102end:35055-35074 | None:intergenic | 35.0% | |
| TCCTCAAAACATTTGCAAGT+TGG | - | contig102end:35398-35417 | None:intergenic | 35.0% | |
| TGGCATACCTTTACATAACA+AGG | + | contig102end:36331-36350 | MsG0080047790.01.T01:CDS | 35.0% | |
| TTGTTGTATAGGATGGTCAA+TGG | + | contig102end:35275-35294 | MsG0080047790.01.T01:intron | 35.0% | |
| TTTGTGATGAGGTTGTTCAT+CGG | - | contig102end:34825-34844 | None:intergenic | 35.0% | |
| ! | CTTAGTCATATTTTCCAAGC+TGG | + | contig102end:36048-36067 | MsG0080047790.01.T01:intron | 35.0% |
| ! | TCAAGGAACGTTTCTTTTAG+CGG | + | contig102end:34572-34591 | MsG0080047790.01.T01:CDS | 35.0% |
| !!! | ATGAAGGTTTTTTCTGCTGT+TGG | + | contig102end:35816-35835 | MsG0080047790.01.T01:CDS | 35.0% |
| !!! | GGTTTTGGTTGGGATTTTTT+AGG | + | contig102end:34993-35012 | MsG0080047790.01.T01:intron | 35.0% |
| !!! | TGAAGGTTTTTTCTGCTGTT+GGG | + | contig102end:35817-35836 | MsG0080047790.01.T01:CDS | 35.0% |
| !!! | TTTGGTTGGGATTTTTTAGG+TGG | + | contig102end:34996-35015 | MsG0080047790.01.T01:intron | 35.0% |
| AAGCAGACGAAGTCCATTAT+TGG | - | contig102end:36292-36311 | None:intergenic | 40.0% | |
| ACATCATCGATGAATTCTCC+AGG | + | contig102end:35542-35561 | MsG0080047790.01.T01:intron | 40.0% | |
| ATTAAGTGCATTCACGTTGG+AGG | - | contig102end:35940-35959 | None:intergenic | 40.0% | |
| ATTCAGCTACTCAGGGAAAA+AGG | - | contig102end:35123-35142 | None:intergenic | 40.0% | |
| CCATTATTGGATGTTTGAGG+CGG | - | contig102end:36279-36298 | None:intergenic | 40.0% | |
| CCTGAGTAGCTGAATTACTA+CGG | + | contig102end:35128-35147 | MsG0080047790.01.T01:intron | 40.0% | |
| CGTAGTAATTCAGCTACTCA+GGG | - | contig102end:35130-35149 | None:intergenic | 40.0% | |
| CTACTACCGATCATTTGATG+AGG | + | contig102end:35046-35065 | MsG0080047790.01.T01:CDS | 40.0% | |
| GCATCTCTACAACTTGACTT+GGG | + | contig102end:34972-34991 | MsG0080047790.01.T01:intron | 40.0% | |
| TCATCATCCTCATCATCATC+AGG | + | contig102end:34712-34731 | MsG0080047790.01.T01:CDS | 40.0% | |
| TCCAGGTAGTTAGTGAAGAT+GGG | + | contig102end:35559-35578 | MsG0080047790.01.T01:intron | 40.0% | |
| TCCATGTTCCAACTTGTCTA+GGG | + | contig102end:34887-34906 | MsG0080047790.01.T01:intron | 40.0% | |
| TCTAGATCGGGAAAAGTTGA+TGG | + | contig102end:36311-36330 | MsG0080047790.01.T01:CDS | 40.0% | |
| TGCATCTCTACAACTTGACT+TGG | + | contig102end:34971-34990 | MsG0080047790.01.T01:intron | 40.0% | |
| TTCATCAACAAAGACCCAGA+AGG | + | contig102end:35069-35088 | MsG0080047790.01.T01:CDS | 40.0% | |
| TTCCATGTTCCAACTTGTCT+AGG | + | contig102end:34886-34905 | MsG0080047790.01.T01:intron | 40.0% | |
| TTCTGATGACAATGATCGTC+GGG | - | contig102end:35792-35811 | None:intergenic | 40.0% | |
| TTGTTCATCGGAATGAGGTT+TGG | - | contig102end:34813-34832 | None:intergenic | 40.0% | |
| ! | AAACATTTGCAAGTTGGGAG+TGG | - | contig102end:35392-35411 | None:intergenic | 40.0% |
| ! | AACAAAGACCCAGAAGGTTT+TGG | + | contig102end:35075-35094 | MsG0080047790.01.T01:CDS | 40.0% |
| ! | CCCAACTTGCAAATGTTTTG+AGG | + | contig102end:35394-35413 | MsG0080047790.01.T01:CDS | 40.0% |
| ! | TGAGGATGATGATGATGATG+TGG | - | contig102end:34704-34723 | None:intergenic | 40.0% |
| !! | GAGGATATTGATGATGAGAG+CGG | - | contig102end:34748-34767 | None:intergenic | 40.0% |
| !! | TTTCACTGACTTTAGGCTTG+TGG | + | contig102end:35655-35674 | MsG0080047790.01.T01:intron | 40.0% |
| !!! | AACTTGACTTGGGTTTTGGT+TGG | + | contig102end:34982-35001 | MsG0080047790.01.T01:intron | 40.0% |
| !!! | ACTTGACTTGGGTTTTGGTT+GGG | + | contig102end:34983-35002 | MsG0080047790.01.T01:intron | 40.0% |
| !!! | CTACAACTTGACTTGGGTTT+TGG | + | contig102end:34978-34997 | MsG0080047790.01.T01:intron | 40.0% |
| ACTTCGTCTGCTTCTAGATC+GGG | + | contig102end:36299-36318 | MsG0080047790.01.T01:CDS | 45.0% | |
| ATGAACCACCCTAGACAAGT+TGG | - | contig102end:34898-34917 | None:intergenic | 45.0% | |
| ATGTTCCAACTTGTCTAGGG+TGG | + | contig102end:34890-34909 | MsG0080047790.01.T01:intron | 45.0% | |
| CCGCCTCAAACATCCAATAA+TGG | + | contig102end:36276-36295 | MsG0080047790.01.T01:CDS | 45.0% | |
| CCGTAGTAATTCAGCTACTC+AGG | - | contig102end:35131-35150 | None:intergenic | 45.0% | |
| CTCCAGGTAGTTAGTGAAGA+TGG | + | contig102end:35558-35577 | MsG0080047790.01.T01:intron | 45.0% | |
| GACTTCGTCTGCTTCTAGAT+CGG | + | contig102end:36298-36317 | MsG0080047790.01.T01:CDS | 45.0% | |
| GTAGCTCTTCATGTCAGACT+CGG | - | contig102end:35613-35632 | None:intergenic | 45.0% | |
| TCATCCTCATCATCATCAGG+TGG | + | contig102end:34715-34734 | MsG0080047790.01.T01:CDS | 45.0% | |
| TCCCATCTTCACTAACTACC+TGG | - | contig102end:35563-35582 | None:intergenic | 45.0% | |
| TGAGGTTGTTCATCGGAATG+AGG | - | contig102end:34818-34837 | None:intergenic | 45.0% | |
| ! | ACCCTAGACAAGTTGGAACA+TGG | - | contig102end:34891-34910 | None:intergenic | 45.0% |
| ! | AGAAGATGATGATGTAGCGG+AGG | - | contig102end:34662-34681 | None:intergenic | 45.0% |
| ! | ATCGGAATGAGGTTTGGCTT+TGG | - | contig102end:34807-34826 | None:intergenic | 45.0% |
| ! | ATGATCGTCGGGTAGGTTTT+CGG | - | contig102end:35781-35800 | None:intergenic | 45.0% |
| ! | GGATGATGATGATGATGTGG+TGG | - | contig102end:34701-34720 | None:intergenic | 45.0% |
| ! | TCTTCATGTCAGACTCGGTT+GGG | - | contig102end:35608-35627 | None:intergenic | 45.0% |
| ! | TGAACCACCTGATGATGATG+AGG | - | contig102end:34722-34741 | None:intergenic | 45.0% |
| ! | TGATGATGATGATGTGGTGG+TGG | - | contig102end:34698-34717 | None:intergenic | 45.0% |
| !! | GACGATGATGATGGATCTGA+CGG | - | contig102end:34539-34558 | None:intergenic | 45.0% |
| !! | TGAGGTTTGGCTTTGGAAGA+AGG | - | contig102end:34800-34819 | None:intergenic | 45.0% |
| !!! | AGGTTTTTTCTGCTGTTGGG+AGG | + | contig102end:35820-35839 | MsG0080047790.01.T01:CDS | 45.0% |
| AGGCTTGTGGAGTAGTGATC+TGG | + | contig102end:35668-35687 | MsG0080047790.01.T01:intron | 50.0% | |
| CGTCGTCGTCATCTCTTTCA+AGG | + | contig102end:34555-34574 | MsG0080047790.01.T01:CDS | 50.0% | |
| GATGACAATGATCGTCGGGT+AGG | - | contig102end:35788-35807 | None:intergenic | 50.0% | |
| GATGACGACGACGATGATGA+TGG | - | contig102end:34548-34567 | None:intergenic | 50.0% | |
| GTGATCTGGACGCTTGCATT+TGG | + | contig102end:35682-35701 | MsG0080047790.01.T01:intron | 50.0% | |
| TATCCTCCCTCGGAAAGAGA+GGG | - | contig102end:35205-35224 | None:intergenic | 50.0% | |
| TCTGGCTGCTCAACTTCTTG+AGG | - | contig102end:34770-34789 | None:intergenic | 50.0% | |
| TGACGGCGAGATCACTACTT+GGG | - | contig102end:34522-34541 | None:intergenic | 50.0% | |
| TTATCCTCCCTCGGAAAGAG+AGG | - | contig102end:35206-35225 | None:intergenic | 50.0% | |
| ! | AGATGATGATGTAGCGGAGG+AGG | - | contig102end:34659-34678 | None:intergenic | 50.0% |
| ! | AGGGGGTGCAGTAAGTGATA+AGG | - | contig102end:35186-35205 | None:intergenic | 50.0% |
| ! | ATGTTTGAGGCGGACAGGTA+CGG | - | contig102end:36269-36288 | None:intergenic | 50.0% |
| ! | ATTGGATGTTTGAGGCGGAC+AGG | - | contig102end:36274-36293 | None:intergenic | 50.0% |
| ! | ATTTGCAAGTTGGGAGTGGC+TGG | - | contig102end:35388-35407 | None:intergenic | 50.0% |
| ! | CTCTTCATGTCAGACTCGGT+TGG | - | contig102end:35609-35628 | None:intergenic | 50.0% |
| ! | CTTCATGTCAGACTCGGTTG+GGG | - | contig102end:35607-35626 | None:intergenic | 50.0% |
| ! | TTGGAAGAAGGAGTGTGCTC+TGG | - | contig102end:34788-34807 | None:intergenic | 50.0% |
| ! | TTGGGAGTGGCTGGTTATGA+GGG | - | contig102end:35379-35398 | None:intergenic | 50.0% |
| ! | TTTTAGCGGTCTCAACGCTC+AGG | + | contig102end:34586-34605 | MsG0080047790.01.T01:CDS | 50.0% |
| !! | TGATGATGATGTGGTGGTGG+TGG | - | contig102end:34695-34714 | None:intergenic | 50.0% |
| ACGGCGAGATCACTACTTGG+GGG | - | contig102end:34520-34539 | None:intergenic | 55.0% | |
| ATCCTCCCTCGGAAAGAGAG+GGG | - | contig102end:35204-35223 | None:intergenic | 55.0% | |
| CTGACGGCGAGATCACTACT+TGG | - | contig102end:34523-34542 | None:intergenic | 55.0% | |
| GACGGCGAGATCACTACTTG+GGG | - | contig102end:34521-34540 | None:intergenic | 55.0% | |
| GGCTGCTCAACTTCTTGAGG+AGG | - | contig102end:34767-34786 | None:intergenic | 55.0% | |
| GGTACTAATAGGCGTGGGGT+GGG | - | contig102end:34626-34645 | None:intergenic | 55.0% | |
| ! | GTTGGGAGTGGCTGGTTATG+AGG | - | contig102end:35380-35399 | None:intergenic | 55.0% |
| ! | TGATGATGTAGCGGAGGAGG+AGG | - | contig102end:34656-34675 | None:intergenic | 55.0% |
| !! | TGATGATGTGGTGGTGGTGG+TGG | - | contig102end:34692-34711 | None:intergenic | 55.0% |
| CGGCGAGATCACTACTTGGG+GGG | - | contig102end:34519-34538 | None:intergenic | 60.0% | |
| CGGCGGTACTAATAGGCGTG+GGG | - | contig102end:34630-34649 | None:intergenic | 60.0% | |
| CGGTACTAATAGGCGTGGGG+TGG | - | contig102end:34627-34646 | None:intergenic | 60.0% | |
| GAGGAGGCGGCGGTACTAAT+AGG | - | contig102end:34637-34656 | None:intergenic | 60.0% | |
| GCGGCGGTACTAATAGGCGT+GGG | - | contig102end:34631-34650 | None:intergenic | 60.0% | |
| TCCTCCCTCGGAAAGAGAGG+GGG | - | contig102end:35203-35222 | None:intergenic | 60.0% | |
| TGCACCCCCTCTCTTTCCGA+GGG | + | contig102end:35196-35215 | MsG0080047790.01.T01:intron | 60.0% | |
| ! | TGATGTAGCGGAGGAGGAGG+AGG | - | contig102end:34653-34672 | None:intergenic | 60.0% |
| ACCCCCTCTCTTTCCGAGGG+AGG | + | contig102end:35199-35218 | MsG0080047790.01.T01:intron | 65.0% | |
| CGTGGGGTGGGCACAAACTC+TGG | - | contig102end:34614-34633 | None:intergenic | 65.0% | |
| CTGCACCCCCTCTCTTTCCG+AGG | + | contig102end:35195-35214 | MsG0080047790.01.T01:intron | 65.0% | |
| GGCGGCGGTACTAATAGGCG+TGG | - | contig102end:34632-34651 | None:intergenic | 65.0% | |
| ! | TGTAGCGGAGGAGGAGGAGG+CGG | - | contig102end:34650-34669 | None:intergenic | 65.0% |
| AGCGGAGGAGGAGGAGGCGG+CGG | - | contig102end:34647-34666 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig102end | gene | 34485 | 36356 | 34485 | ID=MsG0080047790.01;Name=MsG0080047790.01 |
| contig102end | mRNA | 34485 | 36356 | 34485 | ID=MsG0080047790.01.T01;Parent=MsG0080047790.01;Name=MsG0080047790.01.T01;_AED=0.33;_eAED=0.34;_QI=0|0|0|1|0|0|6|0|267 |
| contig102end | exon | 34485 | 34856 | 34485 | ID=MsG0080047790.01.T01:exon:42423;Parent=MsG0080047790.01.T01 |
| contig102end | exon | 35015 | 35096 | 35015 | ID=MsG0080047790.01.T01:exon:42424;Parent=MsG0080047790.01.T01 |
| contig102end | exon | 35337 | 35431 | 35337 | ID=MsG0080047790.01.T01:exon:42425;Parent=MsG0080047790.01.T01 |
| contig102end | exon | 35564 | 35635 | 35564 | ID=MsG0080047790.01.T01:exon:42426;Parent=MsG0080047790.01.T01 |
| contig102end | exon | 35762 | 35841 | 35762 | ID=MsG0080047790.01.T01:exon:42427;Parent=MsG0080047790.01.T01 |
| contig102end | exon | 36254 | 36356 | 36254 | ID=MsG0080047790.01.T01:exon:42428;Parent=MsG0080047790.01.T01 |
| contig102end | CDS | 34485 | 34856 | 34485 | ID=MsG0080047790.01.T01:cds;Parent=MsG0080047790.01.T01 |
| contig102end | CDS | 35015 | 35096 | 35015 | ID=MsG0080047790.01.T01:cds;Parent=MsG0080047790.01.T01 |
| contig102end | CDS | 35337 | 35431 | 35337 | ID=MsG0080047790.01.T01:cds;Parent=MsG0080047790.01.T01 |
| contig102end | CDS | 35564 | 35635 | 35564 | ID=MsG0080047790.01.T01:cds;Parent=MsG0080047790.01.T01 |
| contig102end | CDS | 35762 | 35841 | 35762 | ID=MsG0080047790.01.T01:cds;Parent=MsG0080047790.01.T01 |
| contig102end | CDS | 36254 | 36356 | 36254 | ID=MsG0080047790.01.T01:cds;Parent=MsG0080047790.01.T01 |
| Gene Sequence |
| Protein sequence |
