AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000400.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000400.01.T01 MTR_1g016760 88.272 648 41 7 45 678 1 627 0.0 984
MsG0180000400.01.T01 MTR_3g104280 61.719 640 156 20 45 648 1 587 0.0 604
MsG0180000400.01.T01 MTR_3g104270 60.358 671 163 22 45 678 1 605 0.0 580
MsG0180000400.01.T01 MTR_5g008420 37.587 572 227 29 156 646 185 707 4.98e-57 207
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000400.01.T01 AT2G25970 50.526 665 202 35 45 647 1 600 7.60e-130 397
MsG0180000400.01.T01 AT4G10070 42.969 256 121 10 154 391 174 422 7.72e-46 174
MsG0180000400.01.T01 AT1G33680 36.746 547 251 31 154 654 230 727 2.22e-45 173
MsG0180000400.01.T01 AT5G04430 27.974 311 151 13 113 404 9 265 6.00e-14 73.9
MsG0180000400.01.T01 AT5G04430 29.954 217 108 8 113 318 9 192 4.97e-13 70.9

Find 286 sgRNAs with CRISPR-Local

Find 521 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCGTCGTACTTGCGTTTC+AGG 0.115363 1:+5532010 None:intergenic
GTTCGTCGTACTTGCGTTTC+AGG 0.115363 1:+5532145 None:intergenic
CCTAGGCCCACCTTGTTATT+TGG 0.118001 1:+5530273 None:intergenic
CACACCCAGGAACTGTATTT+TGG 0.135879 1:-5525590 MsG0180000400.01.T01:three_prime_UTR
ACTAATCTATTTGGAGAATT+AGG 0.181216 1:+5530960 None:intergenic
GGAAGGGTTGGTGTTATTAT+TGG 0.182914 1:-5531062 MsG0180000400.01.T01:CDS
AGACACATATAAACCTATTT+TGG 0.209538 1:-5525557 MsG0180000400.01.T01:three_prime_UTR
TAAGTTTGATGTACCAAAAT+AGG 0.234991 1:+5525544 None:intergenic
GTAAGCTCAACTAATCTATT+TGG 0.259507 1:+5530951 None:intergenic
AGGAGGACCGTTGTCGAATT+TGG 0.260354 1:+5531813 None:intergenic
ATGTAAACTTGCTGAATATT+TGG 0.279864 1:-5525728 MsG0180000400.01.T01:three_prime_UTR
CTTTCAGTGGATGTGTCGCC+TGG 0.292557 1:+5529843 None:intergenic
CTTGTTATTTGGAATCTTCA+TGG 0.296247 1:+5530284 None:intergenic
GCTCTTTGAGAGCCTGCTTC+TGG 0.301980 1:+5526141 None:intergenic
AATAGATTAGTTGAGCTTAC+TGG 0.304836 1:-5530948 MsG0180000400.01.T01:CDS
TACAACTGGAGCAAGAATTC+AGG 0.310281 1:-5530108 MsG0180000400.01.T01:intron
ATTGGATTTGGAATTGGAAT+TGG 0.313650 1:+5532069 None:intergenic
AAATCAGCGGTGGCGGGAGG+GGG 0.314498 1:+5531919 None:intergenic
CCTAATGCTGCTGGAGGTTA+TGG 0.319168 1:-5526213 MsG0180000400.01.T01:CDS
GGTGGATAGTTGGCAGCATT+TGG 0.321788 1:+5526375 None:intergenic
AATCCAAGTTACCCGTGATA+TGG 0.322309 1:-5530991 MsG0180000400.01.T01:CDS
GAAATCAGCGGTGGCGGGAG+GGG 0.335247 1:+5531918 None:intergenic
TTGCCCCAAAATACAGTTCC+TGG 0.346969 1:+5525585 None:intergenic
GCCTGCTGAGCTCCCTGTGC+AGG 0.353119 1:+5525934 None:intergenic
AAGCTCGGCCACCCTCTAGC+TGG 0.354172 1:-5526920 MsG0180000400.01.T01:CDS
GGCCAAACTACCACCAACTA+TGG 0.354270 1:-5526474 MsG0180000400.01.T01:CDS
GATTCGTCAGCCATTGGATT+TGG 0.355461 1:+5532057 None:intergenic
TTGAGAGCCTGCTTCTGGTT+GGG 0.355943 1:+5526146 None:intergenic
TCAGCCATTGGATTTGGAAT+TGG 0.360971 1:+5532063 None:intergenic
ATAACACCAACCCTTCCATT+AGG 0.362493 1:+5531068 None:intergenic
CATCCATATCACGGGTAACT+TGG 0.363155 1:+5530988 None:intergenic
TCTTGAGCTGACCCATAGCT+TGG 0.369291 1:+5526498 None:intergenic
TCTCAAAGAGCACCACCTTC+TGG 0.375855 1:-5526129 MsG0180000400.01.T01:CDS
CCTCAAACACAGTCTGGTTA+TGG 0.378826 1:-5526294 MsG0180000400.01.T01:CDS
TAACACCAACCCTTCCATTA+GGG 0.380545 1:+5531069 None:intergenic
ATCCATAGTTGGTGGTAGTT+TGG 0.384589 1:+5526472 None:intergenic
CTTGCTGAGGCACATTGTAC+TGG 0.386367 1:+5526826 None:intergenic
CTGGTGGATATTCTACCAAT+TGG 0.388293 1:-5526776 MsG0180000400.01.T01:CDS
GTCCCATCAGCTGGAGGTGC+AGG 0.392215 1:+5526672 None:intergenic
CAGCATTTGGGCTAGGCTGT+TGG 0.392417 1:+5526388 None:intergenic
CTTGAGCTGACCCATAGCTT+GGG 0.393959 1:+5526499 None:intergenic
CAACCTTCACAGCAAGGTTA+TGG 0.396891 1:-5526417 MsG0180000400.01.T01:CDS
AGCTAGAGGGTGGCCGAGCT+TGG 0.397699 1:+5526922 None:intergenic
ATCCGCTGGTTATAACCAAC+CGG 0.399371 1:-5526625 MsG0180000400.01.T01:CDS
GCTTCTCAACAACCTGGTTA+TGG 0.399715 1:-5526885 MsG0180000400.01.T01:CDS
CAATCTCAAAGTTGCAAAGC+TGG 0.401440 1:+5525809 None:intergenic
AATTGAATCTGCAAAACAAT+TGG 0.402759 1:-5529790 MsG0180000400.01.T01:CDS
CCATAACCTCCAGCAGCATT+AGG 0.408998 1:+5526213 None:intergenic
AGAGCACCACCTTCTGGTTA+TGG 0.409292 1:-5526123 MsG0180000400.01.T01:CDS
ACCTGCACAGGGAGCTCAGC+AGG 0.412517 1:-5525935 MsG0180000400.01.T01:CDS
CAGGCTGAGTCTGGAGGTAA+TGG 0.416113 1:-5530354 MsG0180000400.01.T01:CDS
TTGGCTGCCATATGCTGCTT+GGG 0.417515 1:+5526317 None:intergenic
AAGAGTATGCAAGCTACAAC+TGG 0.418295 1:-5530122 MsG0180000400.01.T01:CDS
TATGCTGCTTGGGAGGTTGC+CGG 0.418388 1:+5526327 None:intergenic
GCTGGGCAGTTGCAGTGGAC+TGG 0.419977 1:+5526751 None:intergenic
TTTGGAATTGGAATTGGAAT+CGG 0.422920 1:+5532075 None:intergenic
TATCAACAACCACCACAATC+AGG 0.423047 1:-5526570 MsG0180000400.01.T01:CDS
AGGAGGTCCGTCGGAGAAAC+CGG 0.425705 1:+5531963 None:intergenic
GTTGGTGTTATTATTGGAAA+AGG 0.426073 1:-5531056 MsG0180000400.01.T01:CDS
AATCAGCGGTGGCGGGAGGG+GGG 0.427004 1:+5531920 None:intergenic
GGTCCTGCACCTCCAGCTGA+TGG 0.427874 1:-5526675 MsG0180000400.01.T01:CDS
GTCGCCGCTCGTCTCCTCTC+TGG 0.429663 1:-5531868 MsG0180000400.01.T01:CDS
GGTTATGGTCCTCCATCATA+TGG 0.431553 1:-5526108 MsG0180000400.01.T01:CDS
CTTGTTACTCGACGAATGAC+TGG 0.434663 1:-5530330 MsG0180000400.01.T01:CDS
AAGGTTGGACAGGTGGAACT+TGG 0.436476 1:+5526433 None:intergenic
GTGGATAGTTGGCAGCATTT+GGG 0.441115 1:+5526376 None:intergenic
GCAGGCGGTCAACCTGGTTA+TGG 0.441342 1:-5526063 MsG0180000400.01.T01:CDS
GAGTAACCACCGGACATTGA+TGG 0.441729 1:+5526956 None:intergenic
GCAACCTCCCAAGCAGCATA+TGG 0.445671 1:-5526324 MsG0180000400.01.T01:CDS
AAATATCTTCAGTTGCAATC+TGG 0.445987 1:-5531020 MsG0180000400.01.T01:CDS
AGCTCGGCCACCCTCTAGCT+GGG 0.447088 1:-5526919 MsG0180000400.01.T01:CDS
CCATAACCAGACTGTGTTTG+AGG 0.447473 1:+5526294 None:intergenic
CCGTCATATGGTGCTCCTGC+AGG 0.448573 1:-5526081 MsG0180000400.01.T01:CDS
GGTGTTATTATTGGAAAAGG+TGG 0.450115 1:-5531053 MsG0180000400.01.T01:CDS
GGCTGCTCAGCCAAGTTATC+CGG 0.451589 1:-5526346 MsG0180000400.01.T01:CDS
TTCGTCGTACTTGCGTTTCA+GGG 0.453834 1:+5532011 None:intergenic
TTCGTCGTACTTGCGTTTCA+GGG 0.453834 1:+5532146 None:intergenic
AAGAAGATTGAAATCCCTAA+TGG 0.454062 1:-5531083 MsG0180000400.01.T01:CDS
GTTGGCTGCCATATGCTGCT+TGG 0.454556 1:+5526316 None:intergenic
GAGTTCGAAATCAGCGGTGG+CGG 0.458495 1:+5531912 None:intergenic
CTCCCTCTGATGTCGTCAAA+CGG 0.458508 1:-5531837 MsG0180000400.01.T01:CDS
GTACTTGCGTTTCAGGGAAG+TGG 0.459530 1:+5532152 None:intergenic
TCGTACTTGCGTTTCAGGGA+AGG 0.461758 1:+5532015 None:intergenic
TTTGAGAGCCTGCTTCTGGT+TGG 0.462877 1:+5526145 None:intergenic
TCATATGGTCCTCCGTCATA+TGG 0.465714 1:-5526093 MsG0180000400.01.T01:CDS
TGGGAGGTTGCCGGATAACT+TGG 0.465719 1:+5526336 None:intergenic
CCTTCCCCTTACGATTCATC+AGG 0.470277 1:-5531793 MsG0180000400.01.T01:intron
CGAAATCAGCGGTGGCGGGA+GGG 0.470982 1:+5531917 None:intergenic
GGTTATCCTCCCCACTCAGC+TGG 0.471437 1:-5526795 MsG0180000400.01.T01:CDS
GTCCTGCACCTCCAGCTGAT+GGG 0.471850 1:-5526674 MsG0180000400.01.T01:CDS
CAGGCACCACATGGTTCCTA+TGG 0.475333 1:-5526039 MsG0180000400.01.T01:CDS
TATGGCTCAGCCCCAAGCTA+TGG 0.475710 1:-5526510 MsG0180000400.01.T01:CDS
TATTGCGATTCGTCAGCCAT+TGG 0.476466 1:+5532051 None:intergenic
TAGTTGGCAGCATTTGGGCT+AGG 0.476978 1:+5526381 None:intergenic
AGCCCCTTGTGGTGGATAGT+TGG 0.478569 1:+5526365 None:intergenic
GCTCCTGCAGGCGGTCAACC+TGG 0.480776 1:-5526069 MsG0180000400.01.T01:CDS
GCTGGAGGTTATGGTCAACC+TGG 0.480952 1:-5526204 MsG0180000400.01.T01:CDS
CCACATGGTTCCTATGGTGC+TGG 0.481020 1:-5526033 MsG0180000400.01.T01:CDS
TGCAGTGGACTGGTCCCAAT+TGG 0.482391 1:+5526761 None:intergenic
GCCCGTGGTGGTAGCTATGA+TGG 0.484526 1:-5525961 MsG0180000400.01.T01:CDS
TGGTTATAACCAACCGGGGC+AGG 0.484946 1:-5526619 MsG0180000400.01.T01:CDS
TTTCAGTGGATGTGTCGCCT+GGG 0.488134 1:+5529844 None:intergenic
TATGCTCAGCAGCAAGGCTA+TGG 0.488791 1:-5526528 MsG0180000400.01.T01:CDS
AGAATATCCACCAGCTGAGT+GGG 0.492850 1:+5526785 None:intergenic
CTATGATGGAGCACCTGCAC+AGG 0.493101 1:-5525947 MsG0180000400.01.T01:CDS
CTATGGTGCTGGTTATCCTC+AGG 0.495560 1:-5526022 MsG0180000400.01.T01:CDS
TGGTGGATATTCTACCAATT+GGG 0.499810 1:-5526775 MsG0180000400.01.T01:CDS
CTACCATAACCTTGCTGTGA+AGG 0.499817 1:+5526414 None:intergenic
CCTCAGCAACAGCAAAATCC+TGG 0.502075 1:-5526699 MsG0180000400.01.T01:CDS
TCGAAATCAGCGGTGGCGGG+AGG 0.502438 1:+5531916 None:intergenic
TACCATCAGCAGAATATGCT+GGG 0.503201 1:+5525998 None:intergenic
AATAATCATAGGTAGACTGC+TGG 0.504119 1:+5526733 None:intergenic
GGCACATTGTACTGGGAAGT+TGG 0.504619 1:+5526834 None:intergenic
CGGTCAACCTGGTTATGGTC+AGG 0.506940 1:-5526058 MsG0180000400.01.T01:CDS
AGTGGTGCTCCGCCTGCATA+CGG 0.509260 1:-5526249 MsG0180000400.01.T01:CDS
CTGTTGATTATAATAATCAT+AGG 0.509838 1:+5526722 None:intergenic
TTGTACTGGGAAGTTGGACC+AGG 0.509939 1:+5526840 None:intergenic
TGCTGCTGAGCATATGATGT+TGG 0.514118 1:+5526537 None:intergenic
CATAACCTTGCTGTGAAGGT+TGG 0.514257 1:+5526418 None:intergenic
AGCCAACCTCAAACACAGTC+TGG 0.515940 1:-5526300 MsG0180000400.01.T01:CDS
TAGAATATCCACCAGCTGAG+TGG 0.517553 1:+5526784 None:intergenic
TCACAGTCACCTAATGCTGC+TGG 0.518137 1:-5526222 MsG0180000400.01.T01:CDS
AGTTCGAAATCAGCGGTGGC+GGG 0.519442 1:+5531913 None:intergenic
ACATCAGCTCTGAGGTGACT+TGG 0.519500 1:+5525903 None:intergenic
ACCGGGGCAGGTATATTCTC+AGG 0.519963 1:-5526607 MsG0180000400.01.T01:CDS
GACTGTGATTGTCCGTATGC+AGG 0.520554 1:+5526237 None:intergenic
TTGTAAGCAGTCCCATCAGC+TGG 0.522053 1:+5526663 None:intergenic
ATGGCTCAGCCCCAAGCTAT+GGG 0.526893 1:-5526509 MsG0180000400.01.T01:CDS
TTCAGTGGATGTGTCGCCTG+GGG 0.528218 1:+5529845 None:intergenic
TGCAGATTCAATTTGTTCAG+AGG 0.529509 1:+5529800 None:intergenic
TCCTGAGAATATACCTGCCC+CGG 0.531982 1:+5526606 None:intergenic
TTGAAGAAGAAGAAAGAAAC+CGG 0.532298 1:+5532099 None:intergenic
GTTGGACCAGGGTATGCTCC+AGG 0.533306 1:+5526852 None:intergenic
CCTCCTCACTCACGAACCAC+CGG 0.534085 1:-5531982 MsG0180000400.01.T01:CDS
CCAGGTTGTTGAGAAGCGGC+AGG 0.535004 1:+5526891 None:intergenic
GAATACGAAGGTATACTCAT+AGG 0.536049 1:+5531122 None:intergenic
GGATATTCCCAACCAGAAGC+AGG 0.537520 1:-5526153 MsG0180000400.01.T01:CDS
GTTTGTCTTATCATCGGTAA+AGG 0.538490 1:-5530158 MsG0180000400.01.T01:CDS
TTACCATCAGCAGAATATGC+TGG 0.541168 1:+5525997 None:intergenic
ATCCCCTTGTGATCCATAGT+TGG 0.541723 1:+5526461 None:intergenic
GGCTGAGCAGCCCCTTGTGG+TGG 0.542062 1:+5526357 None:intergenic
GGCTGGGAAGGAGGATACCC+AGG 0.542313 1:+5526186 None:intergenic
GGTTATGGCTATGCACAGCC+TGG 0.542437 1:-5526870 MsG0180000400.01.T01:CDS
ATACCTTCGTATTCGCATCA+AGG 0.542939 1:-5531113 MsG0180000400.01.T01:CDS
TAACCAGGTTGACCGCCTGC+AGG 0.543015 1:+5526066 None:intergenic
GCTGGAGGTGCAGGACCACC+AGG 0.543305 1:+5526681 None:intergenic
GTGCCTCAGCAAGCTTATGC+AGG 0.543329 1:-5526816 MsG0180000400.01.T01:CDS
AAGCTATGGGTCAGCTCAAG+AGG 0.543556 1:-5526496 MsG0180000400.01.T01:CDS
CTACAGGTTTGTCTTATCAT+CGG 0.549320 1:-5530164 MsG0180000400.01.T01:intron
TATGCAGGCGGAGCACCACT+TGG 0.549760 1:+5526252 None:intergenic
AGGTTGTTGAGAAGCGGCAG+GGG 0.550505 1:+5526893 None:intergenic
AATCTCAAAGTTGCAAAGCT+GGG 0.550828 1:+5525810 None:intergenic
ACTCCTCACTCACGAACCAC+CGG 0.550929 1:-5532118 MsG0180000400.01.T01:CDS
TTGCTGAGGCACATTGTACT+GGG 0.553886 1:+5526827 None:intergenic
TACTCGACGAATGACTGGAC+AGG 0.554297 1:-5530325 MsG0180000400.01.T01:CDS
TCTAGAAATCCATCAATGTC+CGG 0.554420 1:-5526965 MsG0180000400.01.T01:intron
AGACTGCTGGGCAGTTGCAG+TGG 0.556554 1:+5526746 None:intergenic
CATGAAGATTCCAAATAACA+AGG 0.558461 1:-5530283 MsG0180000400.01.T01:intron
GTATATTCTCAGGATGGCTA+TGG 0.559901 1:-5526597 MsG0180000400.01.T01:CDS
CTGAGGATAACCAGCACCAT+AGG 0.562921 1:+5526023 None:intergenic
TAGGATCAGCATCCATATCA+CGG 0.563712 1:+5530979 None:intergenic
GAAATCCCTAATGGAAGGGT+TGG 0.564633 1:-5531074 MsG0180000400.01.T01:CDS
CACTGACCTGATGAATCGTA+AGG 0.565644 1:+5531787 None:intergenic
AAACCGGTGGTTCGTGAGTG+AGG 0.566199 1:+5531979 None:intergenic
AAACCGGTGGTTCGTGAGTG+AGG 0.566199 1:+5532115 None:intergenic
CCTTGCTGTGAAGGTTGGAC+AGG 0.566336 1:+5526423 None:intergenic
TGCCCCAAAATACAGTTCCT+GGG 0.567442 1:+5525586 None:intergenic
GGGACGTTGTTGTAAGAAGG+AGG 0.568413 1:+5531940 None:intergenic
CAGGTTGTTGAGAAGCGGCA+GGG 0.569198 1:+5526892 None:intergenic
GCCCCAGCATATTCTGCTGA+TGG 0.569348 1:-5526000 MsG0180000400.01.T01:CDS
TCTCAGCAAGGTACCAAGCT+CGG 0.570139 1:-5526935 MsG0180000400.01.T01:CDS
TACAATCAACCACCATCCGC+TGG 0.570184 1:-5526639 MsG0180000400.01.T01:CDS
AGCAAGTTTACATGCAAACT+CGG 0.570519 1:+5525738 None:intergenic
AGAAGGAGGAGGAGGTCCGT+CGG 0.571000 1:+5531954 None:intergenic
GTCCGTTTGACGACATCAGA+GGG 0.572785 1:+5531835 None:intergenic
GGCTGTGCATAGCCATAACC+AGG 0.572820 1:+5526873 None:intergenic
GAACAAATCTGATAGGAGGT+TGG 0.572931 1:-5525632 MsG0180000400.01.T01:three_prime_UTR
AATTCCAATTCCAAATCCAA+TGG 0.573748 1:-5532067 MsG0180000400.01.T01:CDS
CCCCGGTTGGTTATAACCAG+CGG 0.574388 1:+5526623 None:intergenic
CGAACCACCGGTTTCTCCGA+CGG 0.574726 1:-5531970 MsG0180000400.01.T01:CDS
TATCCTCCCCACTCAGCTGG+TGG 0.575900 1:-5526792 MsG0180000400.01.T01:CDS
TCCATCATAGCTACCACCAC+GGG 0.578817 1:+5525960 None:intergenic
TGGTTATAACCAGCGGATGG+TGG 0.581931 1:+5526630 None:intergenic
GCAGAATATGCTGGGGCCTG+AGG 0.582180 1:+5526006 None:intergenic
TCCGCTGGTTATAACCAACC+GGG 0.583200 1:-5526624 MsG0180000400.01.T01:CDS
CCCTTGTGATCCATAGTTGG+TGG 0.584482 1:+5526464 None:intergenic
TACCTTCGTATTCGCATCAA+GGG 0.584599 1:-5531112 MsG0180000400.01.T01:CDS
TACTTGCGTTTCAGGGAAGG+TGG 0.584666 1:+5532018 None:intergenic
TTGAGCTGACCCATAGCTTG+GGG 0.586253 1:+5526500 None:intergenic
AGGTTGGACAGGTGGAACTT+GGG 0.587507 1:+5526434 None:intergenic
GCTGCCATATGCTGCTTGGG+AGG 0.588178 1:+5526320 None:intergenic
AGGATCAGCATCCATATCAC+GGG 0.589305 1:+5530980 None:intergenic
AGATTGAAATCCCTAATGGA+AGG 0.590386 1:-5531079 MsG0180000400.01.T01:CDS
CATCAATGAATTTCTTGCTG+AGG 0.591241 1:-5530898 MsG0180000400.01.T01:intron
CTTGGCTGAGCAGCCCCTTG+TGG 0.595602 1:+5526354 None:intergenic
TGGGAATATCCAGAAGGAGG+GGG 0.597039 1:+5526165 None:intergenic
TGCTGTGAAGGTTGGACAGG+TGG 0.597055 1:+5526426 None:intergenic
GAAATAAACTAATTTAACAC+AGG 0.597862 1:+5525778 None:intergenic
TATGACGGAGGACCATATGA+TGG 0.597938 1:+5526096 None:intergenic
ACCACCAACTATGGATCACA+AGG 0.598586 1:-5526465 MsG0180000400.01.T01:CDS
TGTCTTATCATCGGTAAAGG+TGG 0.599577 1:-5530155 MsG0180000400.01.T01:CDS
GAGAATATACCTGCCCCGGT+TGG 0.599934 1:+5526610 None:intergenic
GTGGTTCGTGAGTGAGGAGG+TGG 0.600377 1:+5531985 None:intergenic
CCTGCAGGAGCACCATATGA+CGG 0.602443 1:+5526081 None:intergenic
TTGTTGTAAGAAGGAGGAGG+AGG 0.606553 1:+5531946 None:intergenic
AACCAGACTGTGTTTGAGGT+TGG 0.607137 1:+5526298 None:intergenic
AATGGAACAAATCTGATAGG+AGG 0.607935 1:-5525636 MsG0180000400.01.T01:three_prime_UTR
CCTGATGAATCGTAAGGGGA+AGG 0.609958 1:+5531793 None:intergenic
GGTCCGTTTGACGACATCAG+AGG 0.610197 1:+5531834 None:intergenic
ATCAACAACCACCACAATCA+GGG 0.610790 1:-5526569 MsG0180000400.01.T01:CDS
ATAATCATAGGTAGACTGCT+GGG 0.611439 1:+5526734 None:intergenic
GGATGAGCATACCCTGATTG+TGG 0.611498 1:+5526558 None:intergenic
GATTGAAATCCCTAATGGAA+GGG 0.612326 1:-5531078 MsG0180000400.01.T01:CDS
TTTGATGAGTTCGAAATCAG+CGG 0.613457 1:+5531906 None:intergenic
CTGGAGGTTATGGTCAACCT+GGG 0.614290 1:-5526203 MsG0180000400.01.T01:CDS
CCTGCCGCTTCTCAACAACC+TGG 0.615048 1:-5526891 MsG0180000400.01.T01:CDS
CCTGTCCAACCTTCACAGCA+AGG 0.615879 1:-5526423 MsG0180000400.01.T01:CDS
GTTGGGAATATCCAGAAGGA+GGG 0.618770 1:+5526163 None:intergenic
AGGGAGCAGCGGCACCAGAG+AGG 0.621571 1:+5531854 None:intergenic
TCATATGGTGCTCCTGCAGG+CGG 0.623705 1:-5526078 MsG0180000400.01.T01:CDS
ATAGGTTTATATGTGTCTCA+CGG 0.624811 1:+5525562 None:intergenic
TATGATGGAGCACCTGCACA+GGG 0.625096 1:-5525946 MsG0180000400.01.T01:CDS
TGCCAACTATCCACCACAAG+GGG 0.627557 1:-5526367 MsG0180000400.01.T01:CDS
ACGTTGTTGTAAGAAGGAGG+AGG 0.630187 1:+5531943 None:intergenic
ACTGACCTGATGAATCGTAA+GGG 0.631319 1:+5531788 None:intergenic
TCCGGTGGTTACTCTCAGCA+AGG 0.632731 1:-5526947 MsG0180000400.01.T01:CDS
ATAACCAGGTTGTTGAGAAG+CGG 0.633923 1:+5526887 None:intergenic
ACATCATATGCTCAGCAGCA+AGG 0.636471 1:-5526534 MsG0180000400.01.T01:CDS
GCACAGCCTGGAGCATACCC+TGG 0.637236 1:-5526858 MsG0180000400.01.T01:CDS
TCTGCTGATGGTAATGCAAG+TGG 0.639056 1:-5525988 MsG0180000400.01.T01:CDS
GGTTGTTGAGAAGCGGCAGG+GGG 0.640268 1:+5526894 None:intergenic
GATGAATCGTAAGGGGAAGG+AGG 0.641309 1:+5531796 None:intergenic
GACGACATCAGAGGGAGCAG+CGG 0.642009 1:+5531843 None:intergenic
GGTTGGGAATATCCAGAAGG+AGG 0.643058 1:+5526162 None:intergenic
CTGACCTGATGAATCGTAAG+GGG 0.646597 1:+5531789 None:intergenic
TGTCGAAAAGAATCACACCC+AGG 0.646710 1:-5525603 MsG0180000400.01.T01:three_prime_UTR
GGTTATGGTCAGGCACCACA+TGG 0.648967 1:-5526048 MsG0180000400.01.T01:CDS
AGCTATGGGTCAGCTCAAGA+GGG 0.656317 1:-5526495 MsG0180000400.01.T01:CDS
AGGTCCGTCGGAGAAACCGG+TGG 0.656677 1:+5531966 None:intergenic
TATCCACCAGCTGAGTGGGG+AGG 0.656693 1:+5526789 None:intergenic
ACCTTGCTGAGAGTAACCAC+CGG 0.658041 1:+5526946 None:intergenic
GATGAGTTCGAAATCAGCGG+TGG 0.658474 1:+5531909 None:intergenic
CCTCAAACTCAAAAGCCAAG+TGG 0.658525 1:-5526267 MsG0180000400.01.T01:CDS
GGCACCAGAGAGGAGACGAG+CGG 0.659053 1:+5531864 None:intergenic
GGTTGGTTATAACCAGCGGA+TGG 0.660203 1:+5526627 None:intergenic
TGATTCAATCCTCAGTGGCG+AGG 0.661659 1:-5529766 MsG0180000400.01.T01:intron
TCAGTGGATGTGTCGCCTGG+GGG 0.664235 1:+5529846 None:intergenic
CACCAACTATGGATCACAAG+GGG 0.664298 1:-5526463 MsG0180000400.01.T01:CDS
TAACCTGCATAAGCTTGCTG+AGG 0.668745 1:+5526813 None:intergenic
GATGGAGGACCATAACCAGA+AGG 0.670007 1:+5526114 None:intergenic
TAAGCAGTCCCATCAGCTGG+AGG 0.671420 1:+5526666 None:intergenic
TGAGCATACCCTGATTGTGG+TGG 0.671512 1:+5526561 None:intergenic
GGGCAGGTATATTCTCAGGA+TGG 0.673213 1:-5526603 MsG0180000400.01.T01:CDS
CTGCCAACTATCCACCACAA+GGG 0.674671 1:-5526368 MsG0180000400.01.T01:CDS
CTCCATCATAGCTACCACCA+CGG 0.675902 1:+5525959 None:intergenic
GACCCTTGATGCGAATACGA+AGG 0.677168 1:+5531110 None:intergenic
GACGGAGGACCATATGATGG+AGG 0.678171 1:+5526099 None:intergenic
AAATAAACTAATTTAACACA+GGG 0.678781 1:+5525779 None:intergenic
GAATATCCACCAGCTGAGTG+GGG 0.679261 1:+5526786 None:intergenic
TCTGGTTGGGAATATCCAGA+AGG 0.680022 1:+5526159 None:intergenic
CTGCTGATGGTAATGCAAGT+GGG 0.680991 1:-5525987 MsG0180000400.01.T01:CDS
ACTCGACGAATGACTGGACA+GGG 0.681409 1:-5530324 MsG0180000400.01.T01:CDS
AGAAATCCATCAATGTCCGG+TGG 0.682404 1:-5526962 MsG0180000400.01.T01:CDS
TTGGGAATATCCAGAAGGAG+GGG 0.684340 1:+5526164 None:intergenic
TGTGATTGTCCGTATGCAGG+CGG 0.684703 1:+5526240 None:intergenic
GGTGGTTCGTGAGTGAGGAG+TGG 0.685466 1:+5532120 None:intergenic
CAGTCACCTAATGCTGCTGG+AGG 0.687355 1:-5526219 MsG0180000400.01.T01:CDS
GGAGGACCATAACCAGAAGG+TGG 0.687831 1:+5526117 None:intergenic
TGTGGTGCCTGACCATAACC+AGG 0.688833 1:+5526051 None:intergenic
GCTGCCAACTATCCACCACA+AGG 0.689795 1:-5526369 MsG0180000400.01.T01:CDS
TTGGTTGATTCAATCCTCAG+TGG 0.689871 1:-5529771 MsG0180000400.01.T01:CDS
ACCATCAGCAGAATATGCTG+GGG 0.694973 1:+5525999 None:intergenic
CCACCAACTATGGATCACAA+GGG 0.695976 1:-5526464 MsG0180000400.01.T01:CDS
AAGAAGAAGAAAGAAACCGG+TGG 0.698459 1:+5532102 None:intergenic
CCGCTGGTTATAACCAACCG+GGG 0.703478 1:-5526623 MsG0180000400.01.T01:CDS
ATATTAGTACATCAGCTCTG+AGG 0.707129 1:+5525895 None:intergenic
CCGGTGGTTCGTGAGTGAGG+AGG 0.707715 1:+5531982 None:intergenic
AAACGGACCAAATTCGACAA+CGG 0.710424 1:-5531820 MsG0180000400.01.T01:CDS
AATGCAAGTGGGAATGCCCG+TGG 0.712985 1:-5525976 MsG0180000400.01.T01:CDS
TGTACTGGGAAGTTGGACCA+GGG 0.721480 1:+5526841 None:intergenic
CGACGAATGACTGGACAGGG+TGG 0.727236 1:-5530321 MsG0180000400.01.T01:CDS
CAGCAACAGCAAAATCCTGG+TGG 0.735529 1:-5526696 MsG0180000400.01.T01:CDS
GCAGGAGCACCATATGACGG+AGG 0.739248 1:+5526084 None:intergenic
CAAAACATACCTCGCCACTG+AGG 0.741645 1:+5529757 None:intergenic
GCAAGTGGGAATGCCCGTGG+TGG 0.753231 1:-5525973 MsG0180000400.01.T01:CDS
CCAGCACCATAGGAACCATG+TGG 0.763459 1:+5526033 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAATTTTGATGTATTAA+TGG - Chr1:5531879-5531898 MsG0180000400.01.T01:CDS 10.0%
!! AAACTGTTAATCTTATTATT+TGG - Chr1:5526515-5526534 MsG0180000400.01.T01:CDS 15.0%
!! AAAGAACATTAAAAATTGAA+GGG - Chr1:5527896-5527915 MsG0180000400.01.T01:intron 15.0%
!! AAATAAACTAATTTAACACA+GGG + Chr1:5531944-5531963 None:intergenic 15.0%
!! ACCTAAAATTAAGTAAAATT+AGG + Chr1:5525989-5526008 None:intergenic 15.0%
!! ACTAATAATATATATATGGA+AGG + Chr1:5529371-5529390 None:intergenic 15.0%
!! AGGAACTAATAATATATATA+TGG + Chr1:5529375-5529394 None:intergenic 15.0%
!! ATATAAAATAACACATCTTA+AGG + Chr1:5530610-5530629 None:intergenic 15.0%
!! ATTTATGTAAATGTGATTTA+GGG - Chr1:5528672-5528691 MsG0180000400.01.T01:intron 15.0%
!! CTAATAATATATATATGGAA+GGG + Chr1:5529370-5529389 None:intergenic 15.0%
!! TAATCATTATTTATGTTAGA+TGG - Chr1:5528111-5528130 MsG0180000400.01.T01:intron 15.0%
!! TATAAAATAACACATCTTAA+GGG + Chr1:5530609-5530628 None:intergenic 15.0%
!! TTGTATGTGAATATTTAATT+TGG - Chr1:5527097-5527116 MsG0180000400.01.T01:intron 15.0%
!!! AAGATAATTTTGATAAACTT+AGG + Chr1:5528818-5528837 None:intergenic 15.0%
!!! AATTTCGATTATTTGATAAT+TGG - Chr1:5526547-5526566 MsG0180000400.01.T01:CDS 15.0%
!!! AGTATGAATTTGAAATATAT+AGG - Chr1:5527210-5527229 MsG0180000400.01.T01:intron 15.0%
!!! GTATCATAGTTATATTATTT+TGG - Chr1:5528786-5528805 MsG0180000400.01.T01:intron 15.0%
!!! TCCTAATTTTACTTAATTTT+AGG - Chr1:5525985-5526004 MsG0180000400.01.T01:CDS 15.0%
!! AAATCTGATAGAATGAAAAA+TGG - Chr1:5532040-5532059 MsG0180000400.01.T01:CDS 20.0%
!! ACAATTCTATTGCAAAATAT+GGG + Chr1:5530363-5530382 None:intergenic 20.0%
!! AGTCAAATATTAGAAGTAAT+TGG + Chr1:5527758-5527777 None:intergenic 20.0%
!! AGTTCATTTGTATTTATTTG+TGG - Chr1:5530708-5530727 MsG0180000400.01.T01:intron 20.0%
!! ATATTGTATCTCAAAATACT+GGG + Chr1:5530394-5530413 None:intergenic 20.0%
!! ATCACATTTACATAAATCAA+AGG + Chr1:5528669-5528688 None:intergenic 20.0%
!! ATGTATTCATAGAATTGATT+CGG - Chr1:5528921-5528940 MsG0180000400.01.T01:intron 20.0%
!! ATTTCTGCTGTTAAATTATT+AGG - Chr1:5529819-5529838 MsG0180000400.01.T01:CDS 20.0%
!! GAAAGAACATTAAAAATTGA+AGG - Chr1:5527895-5527914 MsG0180000400.01.T01:intron 20.0%
!! GAAATAAACTAATTTAACAC+AGG + Chr1:5531945-5531964 None:intergenic 20.0%
!! GATTTATGTAAATGTGATTT+AGG - Chr1:5528671-5528690 MsG0180000400.01.T01:intron 20.0%
!! GTCAAATATTAGAAGTAATT+GGG + Chr1:5527757-5527776 None:intergenic 20.0%
!! GTGGTTATTATTAATGTTAT+TGG - Chr1:5527710-5527729 MsG0180000400.01.T01:intron 20.0%
!! TAATTGAATTGTGATAAAAG+AGG + Chr1:5525964-5525983 None:intergenic 20.0%
!! TACAATTCTATTGCAAAATA+TGG + Chr1:5530364-5530383 None:intergenic 20.0%
!! TATATTGTATCTCAAAATAC+TGG + Chr1:5530395-5530414 None:intergenic 20.0%
!! TGTGAACAACAATAATATAA+GGG + Chr1:5527814-5527833 None:intergenic 20.0%
!! TTGTGAACAACAATAATATA+AGG + Chr1:5527815-5527834 None:intergenic 20.0%
!!! AATTTTTAATGTTCTTTCAG+TGG + Chr1:5527893-5527912 None:intergenic 20.0%
!!! AGAAGATTTAAAATCTCTTA+AGG - Chr1:5526913-5526932 MsG0180000400.01.T01:CDS 20.0%
!!! ATTAACTCTAATATTTGTTG+TGG - Chr1:5529947-5529966 MsG0180000400.01.T01:intron 20.0%
!!! ATTTTGGAGTGATTTATATT+TGG + Chr1:5526226-5526245 None:intergenic 20.0%
!!! CTGTTGATTATAATAATCAT+AGG + Chr1:5531001-5531020 None:intergenic 20.0%
!!! GTTTAAAATTATGCAGTATA+CGG + Chr1:5529345-5529364 None:intergenic 20.0%
!!! TATTTTACCATCTAAACATT+TGG + Chr1:5528555-5528574 None:intergenic 20.0%
!!! TCTTGACAATTTGTATATTT+TGG - Chr1:5530244-5530263 MsG0180000400.01.T01:intron 20.0%
!!! TGATTTTAATAGAGTCTATT+TGG - Chr1:5526016-5526035 MsG0180000400.01.T01:CDS 20.0%
!!! TTAATGAATCAGTTTCTTTT+GGG - Chr1:5527325-5527344 MsG0180000400.01.T01:intron 20.0%
!!! TTATACGTACTTTTATTTGA+GGG - Chr1:5530050-5530069 MsG0180000400.01.T01:intron 20.0%
!!! TTGACATCTATTTTATAGAT+AGG - Chr1:5528951-5528970 MsG0180000400.01.T01:intron 20.0%
!!! TTTAAAATTATGCAGTATAC+GGG + Chr1:5529344-5529363 None:intergenic 20.0%
!!! TTTAATGAATCAGTTTCTTT+TGG - Chr1:5527324-5527343 MsG0180000400.01.T01:intron 20.0%
!!! TTTATACGTACTTTTATTTG+AGG - Chr1:5530049-5530068 MsG0180000400.01.T01:intron 20.0%
! AAAAATGGAACAAATCTGAT+AGG - Chr1:5532029-5532048 MsG0180000400.01.T01:CDS 25.0%
! AAAGAGTCTATAGAGAAAAT+AGG + Chr1:5526851-5526870 None:intergenic 25.0%
! AACAAGCTTAATTATTGTGT+GGG + Chr1:5528276-5528295 None:intergenic 25.0%
! AACTAAACAAGCTAAATGTA+GGG + Chr1:5530309-5530328 None:intergenic 25.0%
! AAGAGTCTATAGAGAAAATA+GGG + Chr1:5526850-5526869 None:intergenic 25.0%
! AATTGAATCTGCAAAACAAT+TGG - Chr1:5527930-5527949 MsG0180000400.01.T01:intron 25.0%
! ACTAATCTATTTGGAGAATT+AGG + Chr1:5526763-5526782 None:intergenic 25.0%
! AGTTCATTGTTGGAATATTA+TGG - Chr1:5529663-5529682 MsG0180000400.01.T01:intron 25.0%
! ATAAATCATCATCATTGTTG+TGG - Chr1:5527691-5527710 MsG0180000400.01.T01:intron 25.0%
! ATGATAAAAATTACGAGAAG+AGG + Chr1:5529929-5529948 None:intergenic 25.0%
! CAATTCTATTGCAAAATATG+GGG + Chr1:5530362-5530381 None:intergenic 25.0%
! CTTAAAACTCAATTCTTTCT+TGG - Chr1:5528248-5528267 MsG0180000400.01.T01:intron 25.0%
! GCGTACTTAAAAATGAAAAA+TGG - Chr1:5532014-5532033 MsG0180000400.01.T01:CDS 25.0%
! GTATAGACTAAGTATATGTT+CGG + Chr1:5526487-5526506 None:intergenic 25.0%
! TAACAATCATGGTTGAAAAA+AGG + Chr1:5529395-5529414 None:intergenic 25.0%
! TAACTAAACAAGCTAAATGT+AGG + Chr1:5530310-5530329 None:intergenic 25.0%
! TAAGTTTGATGTACCAAAAT+AGG + Chr1:5532179-5532198 None:intergenic 25.0%
! TACATTATCAGATACCATAT+GGG + Chr1:5530581-5530600 None:intergenic 25.0%
! TAGTTTAACAACTACAAAAC+AGG + Chr1:5529785-5529804 None:intergenic 25.0%
! TATAATTCCTATGAGTATCT+AGG + Chr1:5529106-5529125 None:intergenic 25.0%
! TATTATGCCAAATACAAGTT+GGG + Chr1:5529313-5529332 None:intergenic 25.0%
! TTAAAATTATGCAGTATACG+GGG + Chr1:5529343-5529362 None:intergenic 25.0%
! TTACATTATCAGATACCATA+TGG + Chr1:5530582-5530601 None:intergenic 25.0%
! TTTATGTCTATGTCTATAGA+TGG - Chr1:5529245-5529264 MsG0180000400.01.T01:intron 25.0%
! TTTCTATTTACTTGTAGCAA+AGG - Chr1:5530205-5530224 MsG0180000400.01.T01:intron 25.0%
!! AATTGTTAGCTTAACAATCA+TGG + Chr1:5529406-5529425 None:intergenic 25.0%
!! AGACACATATAAACCTATTT+TGG - Chr1:5532163-5532182 MsG0180000400.01.T01:CDS 25.0%
!! GACTCAATTTTTCTTCTTTT+TGG - Chr1:5527514-5527533 MsG0180000400.01.T01:intron 25.0%
!! TAAGATCACGATTTTTACTT+TGG - Chr1:5528348-5528367 MsG0180000400.01.T01:intron 25.0%
!! TAGTTCTTGCTAATTGATTT+GGG - Chr1:5528482-5528501 MsG0180000400.01.T01:intron 25.0%
!! TATACCTCTACAATCAATTT+TGG + Chr1:5526242-5526261 None:intergenic 25.0%
!! TCTGAATCTCTTATTTAAAC+TGG - Chr1:5529571-5529590 MsG0180000400.01.T01:intron 25.0%
!! TGATTCTAGAAAGTAGAAAT+TGG - Chr1:5526326-5526345 MsG0180000400.01.T01:CDS 25.0%
!! TGTATTCATAGAATTGATTC+GGG - Chr1:5528922-5528941 MsG0180000400.01.T01:intron 25.0%
!! TTTTTACTGTAGAAAAGCTT+TGG - Chr1:5529021-5529040 MsG0180000400.01.T01:intron 25.0%
!!! AGTTTGTTGTCTTAGATTAT+TGG - Chr1:5530160-5530179 MsG0180000400.01.T01:CDS 25.0%
!!! ATGTAAACTTGCTGAATATT+TGG - Chr1:5531992-5532011 MsG0180000400.01.T01:CDS 25.0%
!!! ATTTGTATATTTTGGAGTCA+TGG - Chr1:5530252-5530271 MsG0180000400.01.T01:intron 25.0%
!!! CAATTTTTCTTCTTTTTGGT+TGG - Chr1:5527518-5527537 MsG0180000400.01.T01:intron 25.0%
!!! GAATATTTAATTTGGCGTAA+AGG - Chr1:5527105-5527124 MsG0180000400.01.T01:intron 25.0%
!!! GTTTGTTGTCTTAGATTATT+GGG - Chr1:5530161-5530180 MsG0180000400.01.T01:CDS 25.0%
AAAACTAACAGCAATATGAG+AGG + Chr1:5530029-5530048 None:intergenic 30.0%
AAATATCTTCAGTTGCAATC+TGG - Chr1:5526700-5526719 MsG0180000400.01.T01:CDS 30.0%
AAATCCAACAGTAAAGCATA+GGG + Chr1:5527991-5528010 None:intergenic 30.0%
AACAAAACAAAATGAAGGCA+TGG + Chr1:5527652-5527671 None:intergenic 30.0%
AAGAAGATTGAAATCCCTAA+TGG - Chr1:5526637-5526656 MsG0180000400.01.T01:CDS 30.0%
AAGATTCCAAATAACAAGGT+GGG - Chr1:5527441-5527460 MsG0180000400.01.T01:intron 30.0%
AATAAGTAGCCATTTCTTCA+TGG - Chr1:5528571-5528590 MsG0180000400.01.T01:intron 30.0%
AATTCCAATTCCAAATCCAA+TGG - Chr1:5525653-5525672 MsG0180000400.01.T01:three_prime_UTR 30.0%
AGATACAGACAATAACTACA+AGG + Chr1:5528088-5528107 None:intergenic 30.0%
AGCACAACAAAACAAAATGA+AGG + Chr1:5527657-5527676 None:intergenic 30.0%
ATACCATATGGGATTAGAAA+GGG + Chr1:5530570-5530589 None:intergenic 30.0%
ATAGGTTTATATGTGTCTCA+CGG + Chr1:5532161-5532180 None:intergenic 30.0%
ATATGATATTCATTGCCTCA+AGG + Chr1:5530426-5530445 None:intergenic 30.0%
CAATATAGTGTATTTCCTTG+AGG - Chr1:5530408-5530427 MsG0180000400.01.T01:intron 30.0%
CATGAAGATTCCAAATAACA+AGG - Chr1:5527437-5527456 MsG0180000400.01.T01:intron 30.0%
CTATTATGCCAAATACAAGT+TGG + Chr1:5529314-5529333 None:intergenic 30.0%
GAACAAGCTTAATTATTGTG+TGG + Chr1:5528277-5528296 None:intergenic 30.0%
GCAACTAAAATTGAGTATAG+AGG - Chr1:5526072-5526091 MsG0180000400.01.T01:CDS 30.0%
GTAAGCTCAACTAATCTATT+TGG + Chr1:5526772-5526791 None:intergenic 30.0%
GTTTCAGAATAAAAAGCTTC+AGG + Chr1:5529748-5529767 None:intergenic 30.0%
GTTTGTTCTCCTAGATTATT+GGG - Chr1:5530083-5530102 MsG0180000400.01.T01:intron 30.0%
TAGATTATTGGGTGAAGTTT+GGG - Chr1:5530094-5530113 MsG0180000400.01.T01:intron 30.0%
TAGATTATTGGGTGATGTTT+GGG - Chr1:5530172-5530191 MsG0180000400.01.T01:intron 30.0%
TTAGATTATTGGGTGATGTT+TGG - Chr1:5530171-5530190 MsG0180000400.01.T01:intron 30.0%
TTGAAGAAGAAGAAAGAAAC+CGG + Chr1:5525624-5525643 None:intergenic 30.0%
! AATAGATTAGTTGAGCTTAC+TGG - Chr1:5526772-5526791 MsG0180000400.01.T01:CDS 30.0%
! AGAATTGATTCTGACATGTT+TGG - Chr1:5526098-5526117 MsG0180000400.01.T01:CDS 30.0%
! AGTTTGTTCTCCTAGATTAT+TGG - Chr1:5530082-5530101 MsG0180000400.01.T01:intron 30.0%
! ATGATTGACTTTGACATGTT+TGG - Chr1:5526261-5526280 MsG0180000400.01.T01:CDS 30.0%
! ATTGGATTTGGAATTGGAAT+TGG + Chr1:5525654-5525673 None:intergenic 30.0%
! CACAATAATTAAGCTTGTTC+AGG - Chr1:5528277-5528296 MsG0180000400.01.T01:intron 30.0%
! CTAGTTCTTGCTAATTGATT+TGG - Chr1:5528481-5528500 MsG0180000400.01.T01:intron 30.0%
! TTGTGTGATTAGTTCATTGT+GGG - Chr1:5529463-5529482 MsG0180000400.01.T01:intron 30.0%
! TTTGGAATTGGAATTGGAAT+CGG + Chr1:5525648-5525667 None:intergenic 30.0%
!! AGTTCTTGCTAATTGATTTG+GGG - Chr1:5528483-5528502 MsG0180000400.01.T01:intron 30.0%
!! CTTGTTATTTGGAATCTTCA+TGG + Chr1:5527439-5527458 None:intergenic 30.0%
!! GTTGGTGTTATTATTGGAAA+AGG - Chr1:5526664-5526683 MsG0180000400.01.T01:CDS 30.0%
!! TGTACTGATTAGTTCATTGT+TGG - Chr1:5529653-5529672 MsG0180000400.01.T01:intron 30.0%
!! TGTGTTGTTAAGCATTTTAG+TGG - Chr1:5529857-5529876 MsG0180000400.01.T01:CDS 30.0%
!! TTAATTTGGCGTAAAGGTTT+TGG - Chr1:5527111-5527130 MsG0180000400.01.T01:intron 30.0%
!!! GATTTGTGTTGGTTTTTAAC+AGG - Chr1:5527347-5527366 MsG0180000400.01.T01:intron 30.0%
!!! GTGTTTTTTACATTACTCCT+AGG + Chr1:5527467-5527486 None:intergenic 30.0%
AATAATCATAGGTAGACTGC+TGG + Chr1:5530990-5531009 None:intergenic 35.0%
AATCTCAAAGTTGCAAAGCT+GGG + Chr1:5531913-5531932 None:intergenic 35.0%
AATGGAACAAATCTGATAGG+AGG - Chr1:5532084-5532103 MsG0180000400.01.T01:CDS 35.0%
AATTATAGCCTGTTCAACAG+TGG - Chr1:5529119-5529138 MsG0180000400.01.T01:intron 35.0%
ACAACTACAAAACAGGATGT+TGG + Chr1:5529778-5529797 None:intergenic 35.0%
AGATTATTGGGTGAAGTTTG+GGG - Chr1:5530095-5530114 MsG0180000400.01.T01:intron 35.0%
AGATTATTGGGTGATGTTTG+GGG - Chr1:5530173-5530192 MsG0180000400.01.T01:intron 35.0%
AGATTGAAATCCCTAATGGA+AGG - Chr1:5526641-5526660 MsG0180000400.01.T01:CDS 35.0%
AGCAAAACAAGCTATAACCA+AGG + Chr1:5528016-5528035 None:intergenic 35.0%
AGCAAGTTTACATGCAAACT+CGG + Chr1:5531985-5532004 None:intergenic 35.0%
AGCAATATGAGAGGAAATCA+AGG + Chr1:5530020-5530039 None:intergenic 35.0%
AGCTTAGCCAAATGTTTAGA+TGG - Chr1:5528545-5528564 MsG0180000400.01.T01:intron 35.0%
ATAATCATAGGTAGACTGCT+GGG + Chr1:5530989-5531008 None:intergenic 35.0%
ATATTAGTACATCAGCTCTG+AGG + Chr1:5531828-5531847 None:intergenic 35.0%
ATGTACGTACTTCTATCTGA+TGG - Chr1:5530128-5530147 MsG0180000400.01.T01:CDS 35.0%
ATTCTCTTATGATTGCTGGA+TGG - Chr1:5528209-5528228 MsG0180000400.01.T01:intron 35.0%
CAAACTTCACCCAATAATCT+AGG + Chr1:5530095-5530114 None:intergenic 35.0%
CAAATCCAACAGTAAAGCAT+AGG + Chr1:5527992-5528011 None:intergenic 35.0%
CACTCCAAAATTGATTGTAG+AGG - Chr1:5526235-5526254 MsG0180000400.01.T01:CDS 35.0%
CATCAATGAATTTCTTGCTG+AGG - Chr1:5526822-5526841 MsG0180000400.01.T01:CDS 35.0%
CTACAGGTTTGTCTTATCAT+CGG - Chr1:5527556-5527575 MsG0180000400.01.T01:intron 35.0%
CTAGATTATTGGGTGAAGTT+TGG - Chr1:5530093-5530112 MsG0180000400.01.T01:intron 35.0%
CTATGCTTTACTGTTGGATT+TGG - Chr1:5527990-5528009 MsG0180000400.01.T01:intron 35.0%
GAAGATTCCAAATAACAAGG+TGG - Chr1:5527440-5527459 MsG0180000400.01.T01:intron 35.0%
GATACCATATGGGATTAGAA+AGG + Chr1:5530571-5530590 None:intergenic 35.0%
GATTGAAATCCCTAATGGAA+GGG - Chr1:5526642-5526661 MsG0180000400.01.T01:CDS 35.0%
GCAATATGAGAGGAAATCAA+GGG + Chr1:5530019-5530038 None:intergenic 35.0%
GCGTATGTATACTACATCTT+GGG - Chr1:5530683-5530702 MsG0180000400.01.T01:intron 35.0%
GTACCCATTCATTTCGAATA+GGG - Chr1:5530480-5530499 MsG0180000400.01.T01:intron 35.0%
GTTTGTCTTATCATCGGTAA+AGG - Chr1:5527562-5527581 MsG0180000400.01.T01:intron 35.0%
TACCATATGGGATTAGAAAG+GGG + Chr1:5530569-5530588 None:intergenic 35.0%
TCGAAATGAATGGGTACAAA+AGG + Chr1:5530477-5530496 None:intergenic 35.0%
TCTAGAAATCCATCAATGTC+CGG - Chr1:5530755-5530774 MsG0180000400.01.T01:intron 35.0%
TCTCCCTATTCGAAATGAAT+GGG + Chr1:5530486-5530505 None:intergenic 35.0%
TCTGATACCCAACTTGTATT+TGG - Chr1:5529303-5529322 MsG0180000400.01.T01:intron 35.0%
TGCGTATGTATACTACATCT+TGG - Chr1:5530682-5530701 MsG0180000400.01.T01:intron 35.0%
TGCTATTCTCTTATGATTGC+TGG - Chr1:5528205-5528224 MsG0180000400.01.T01:intron 35.0%
TGCTATTGTTCATGCATTGA+AGG - Chr1:5528320-5528339 MsG0180000400.01.T01:intron 35.0%
TGTACCCATTCATTTCGAAT+AGG - Chr1:5530479-5530498 MsG0180000400.01.T01:intron 35.0%
TTATATGCTGGAGCTATGTT+TGG - Chr1:5529714-5529733 MsG0180000400.01.T01:intron 35.0%
TTCTCTTATGATTGCTGGAT+GGG - Chr1:5528210-5528229 MsG0180000400.01.T01:intron 35.0%
TTGCAAAATATGGGGTGATA+TGG + Chr1:5530354-5530373 None:intergenic 35.0%
TTTGATGAGTTCGAAATCAG+CGG + Chr1:5525817-5525836 None:intergenic 35.0%
! AGCATCAAGTCTTATATGGT+CGG - Chr1:5529196-5529215 MsG0180000400.01.T01:intron 35.0%
! ATGTTGCGCTTTAGATTCAT+AGG - Chr1:5529054-5529073 MsG0180000400.01.T01:intron 35.0%
! ATGTTGCTTGTATGTCTTTC+AGG - Chr1:5527834-5527853 MsG0180000400.01.T01:intron 35.0%
! GAATACGAAGGTATACTCAT+AGG + Chr1:5526601-5526620 None:intergenic 35.0%
! GAATTGTTTTCTGTGTCTAC+AGG - Chr1:5527540-5527559 MsG0180000400.01.T01:intron 35.0%
! GTTGTGTGATTAGTTCATTG+TGG - Chr1:5529462-5529481 MsG0180000400.01.T01:intron 35.0%
! TCTAAGACAACAAACTTGAC+TGG + Chr1:5530156-5530175 None:intergenic 35.0%
! TCTGAGCATCAAGTCTTATA+TGG - Chr1:5529192-5529211 MsG0180000400.01.T01:intron 35.0%
! TGCAGATTCAATTTGTTCAG+AGG + Chr1:5527923-5527942 None:intergenic 35.0%
! TGGTGGATATTCTACCAATT+GGG - Chr1:5530945-5530964 MsG0180000400.01.T01:CDS 35.0%
! TGTTGCGCTTTAGATTCATA+GGG - Chr1:5529055-5529074 MsG0180000400.01.T01:intron 35.0%
!! ATTCATAGAATTGATTCGGG+AGG - Chr1:5528925-5528944 MsG0180000400.01.T01:intron 35.0%
!! GGTGTTATTATTGGAAAAGG+TGG - Chr1:5526667-5526686 MsG0180000400.01.T01:CDS 35.0%
!! GTACTTTTATTTGAGGGTTC+CGG - Chr1:5530056-5530075 MsG0180000400.01.T01:intron 35.0%
!!! GTTTCTTTTGGGATTTGTGT+TGG - Chr1:5527336-5527355 MsG0180000400.01.T01:intron 35.0%
AAAAAGCCTGCGCAAAAGAT+TGG + Chr1:5529003-5529022 None:intergenic 40.0%
AAACGGACCAAATTCGACAA+CGG - Chr1:5525900-5525919 MsG0180000400.01.T01:exon 40.0%
AAGAAACACCACTGTTGAAC+AGG + Chr1:5529130-5529149 None:intergenic 40.0%
AAGAAGAAGAAAGAAACCGG+TGG + Chr1:5525621-5525640 None:intergenic 40.0%
AATCAAGGGATAAAGACGAG+TGG + Chr1:5530005-5530024 None:intergenic 40.0%
AATCCAAGTTACCCGTGATA+TGG - Chr1:5526729-5526748 MsG0180000400.01.T01:CDS 40.0%
ACTGACCTGATGAATCGTAA+GGG + Chr1:5525935-5525954 None:intergenic 40.0%
ATAACACCAACCCTTCCATT+AGG + Chr1:5526655-5526674 None:intergenic 40.0%
ATAACCAGGTTGTTGAGAAG+CGG + Chr1:5530836-5530855 None:intergenic 40.0%
ATACCTTCGTATTCGCATCA+AGG - Chr1:5526607-5526626 MsG0180000400.01.T01:CDS 40.0%
ATCAACAACCACCACAATCA+GGG - Chr1:5531151-5531170 MsG0180000400.01.T01:intron 40.0%
CAATCTCAAAGTTGCAAAGC+TGG + Chr1:5531914-5531933 None:intergenic 40.0%
CATATAGACTGCATAAGCAG+CGG + Chr1:5530281-5530300 None:intergenic 40.0%
CATATGCTTGTCTACTTCTG+TGG - Chr1:5530441-5530460 MsG0180000400.01.T01:intron 40.0%
CATTCATTTCGAATAGGGAG+AGG - Chr1:5530485-5530504 MsG0180000400.01.T01:intron 40.0%
CCTGAAAAATGGCAGTCAAA+CGG + Chr1:5529283-5529302 None:intergenic 40.0%
CTCTCCCTATTCGAAATGAA+TGG + Chr1:5530487-5530506 None:intergenic 40.0%
CTTCGAAGCAAAACTAGACT+TGG + Chr1:5528048-5528067 None:intergenic 40.0%
GAACAAATCTGATAGGAGGT+TGG - Chr1:5532088-5532107 MsG0180000400.01.T01:CDS 40.0%
GACACAAAACTGAGTTAGCA+AGG + Chr1:5528853-5528872 None:intergenic 40.0%
GATTATTGGGTGAAGTTTGG+GGG - Chr1:5530096-5530115 MsG0180000400.01.T01:intron 40.0%
GGTGTTTCTTACACATGCAA+GGG - Chr1:5529140-5529159 MsG0180000400.01.T01:intron 40.0%
GTATATTCTCAGGATGGCTA+TGG - Chr1:5531123-5531142 MsG0180000400.01.T01:CDS 40.0%
GTCACAACCTAGATACTCAT+AGG - Chr1:5529096-5529115 MsG0180000400.01.T01:intron 40.0%
TAACACCAACCCTTCCATTA+GGG + Chr1:5526654-5526673 None:intergenic 40.0%
TAACTCAGTTTGTCTCGATC+TGG - Chr1:5530524-5530543 MsG0180000400.01.T01:intron 40.0%
TACAACTGGAGCAAGAATTC+AGG - Chr1:5527612-5527631 MsG0180000400.01.T01:intron 40.0%
TACCATCAGCAGAATATGCT+GGG + Chr1:5531725-5531744 None:intergenic 40.0%
TACCCCTTTCTAATCCCATA+TGG - Chr1:5530564-5530583 MsG0180000400.01.T01:intron 40.0%
TACCTTCGTATTCGCATCAA+GGG - Chr1:5526608-5526627 MsG0180000400.01.T01:CDS 40.0%
TAGCCATTTCTTCATGGCTA+AGG - Chr1:5528577-5528596 MsG0180000400.01.T01:intron 40.0%
TAGGATCAGCATCCATATCA+CGG + Chr1:5526744-5526763 None:intergenic 40.0%
TATCAACAACCACCACAATC+AGG - Chr1:5531150-5531169 MsG0180000400.01.T01:intron 40.0%
TCTAGGAGAACAAACTTGAC+CGG + Chr1:5530078-5530097 None:intergenic 40.0%
TCTTGACCTATGCAATCTGT+CGG - Chr1:5528448-5528467 MsG0180000400.01.T01:intron 40.0%
TGGGTATCAGACCTGAAAAA+TGG + Chr1:5529294-5529313 None:intergenic 40.0%
TGGTGTTTCTTACACATGCA+AGG - Chr1:5529139-5529158 MsG0180000400.01.T01:intron 40.0%
TGTACCCTATGCTTTACTGT+TGG - Chr1:5527984-5528003 MsG0180000400.01.T01:intron 40.0%
TGTCTTATCATCGGTAAAGG+TGG - Chr1:5527565-5527584 MsG0180000400.01.T01:intron 40.0%
TTACCATCAGCAGAATATGC+TGG + Chr1:5531726-5531745 None:intergenic 40.0%
TTAGATTCATAGGGATGCCT+GGG - Chr1:5529064-5529083 MsG0180000400.01.T01:intron 40.0%
TTATGCAGTATACGGGGTTA+AGG + Chr1:5529337-5529356 None:intergenic 40.0%
TTCTTACACATGCAAGGGTA+TGG - Chr1:5529145-5529164 MsG0180000400.01.T01:intron 40.0%
TTTACTGTTGGATTTGGCCT+TGG - Chr1:5527996-5528015 MsG0180000400.01.T01:intron 40.0%
TTTAGATTCATAGGGATGCC+TGG - Chr1:5529063-5529082 MsG0180000400.01.T01:intron 40.0%
! AAGAGTATGCAAGCTACAAC+TGG - Chr1:5527598-5527617 MsG0180000400.01.T01:intron 40.0%
! AATGAAGGCATGGCTTAAGA+AGG + Chr1:5527642-5527661 None:intergenic 40.0%
! ACAAAGCACCATAACAAGGT+AGG + Chr1:5529892-5529911 None:intergenic 40.0%
! ACACCCAGGAACTGTATTTT+GGG - Chr1:5532131-5532150 MsG0180000400.01.T01:CDS 40.0%
! CTGGTGGATATTCTACCAAT+TGG - Chr1:5530944-5530963 MsG0180000400.01.T01:CDS 40.0%
! GGTAACAAAGCACCATAACA+AGG + Chr1:5529896-5529915 None:intergenic 40.0%
! TCAGCCATTGGATTTGGAAT+TGG + Chr1:5525660-5525679 None:intergenic 40.0%
! TGGGATTAGAAAGGGGTATA+AGG + Chr1:5530562-5530581 None:intergenic 40.0%
! TGTTGTGCGTTGAGTTCTTT+TGG - Chr1:5527492-5527511 MsG0180000400.01.T01:intron 40.0%
! TTGGTTGATTCAATCCTCAG+TGG - Chr1:5527949-5527968 MsG0180000400.01.T01:intron 40.0%
!! ATCCATAGTTGGTGGTAGTT+TGG + Chr1:5531251-5531270 None:intergenic 40.0%
!! GGAAGGGTTGGTGTTATTAT+TGG - Chr1:5526658-5526677 MsG0180000400.01.T01:CDS 40.0%
!!! ACTTGGCTTTTGAGTTTGAG+GGG + Chr1:5531454-5531473 None:intergenic 40.0%
!!! ATTGTGAGCTGGTTTTTGGA+GGG - Chr1:5526940-5526959 MsG0180000400.01.T01:CDS 40.0%
!!! CACTTGGCTTTTGAGTTTGA+GGG + Chr1:5531455-5531474 None:intergenic 40.0%
!!! TGTCATTGTGAGCTGGTTTT+TGG - Chr1:5526936-5526955 MsG0180000400.01.T01:CDS 40.0%
!!! TTGGCGTAAAGGTTTTGGAT+AGG - Chr1:5527116-5527135 MsG0180000400.01.T01:intron 40.0%
ACATCATATGCTCAGCAGCA+AGG - Chr1:5531186-5531205 MsG0180000400.01.T01:intron 45.0%
ACCACCAACTATGGATCACA+AGG - Chr1:5531255-5531274 MsG0180000400.01.T01:intron 45.0%
ACCATCAGCAGAATATGCTG+GGG + Chr1:5531724-5531743 None:intergenic 45.0%
ACGAGAAGAGGCTATAAGAG+CGG + Chr1:5529917-5529936 None:intergenic 45.0%
ACGCCTTAGCCATGAAGAAA+TGG + Chr1:5528583-5528602 None:intergenic 45.0%
ACGTCACTCCTACCTTGTTA+TGG - Chr1:5529881-5529900 MsG0180000400.01.T01:intron 45.0%
ACGTTGTTGTAAGAAGGAGG+AGG + Chr1:5525780-5525799 None:intergenic 45.0%
AGAAATCCATCAATGTCCGG+TGG - Chr1:5530758-5530777 MsG0180000400.01.T01:intron 45.0%
AGAATATCCACCAGCTGAGT+GGG + Chr1:5530938-5530957 None:intergenic 45.0%
AGGATCAGCATCCATATCAC+GGG + Chr1:5526743-5526762 None:intergenic 45.0%
AGTATCTAGGTTGTGACCAG+AGG + Chr1:5529093-5529112 None:intergenic 45.0%
ATCCCCTTGTGATCCATAGT+TGG + Chr1:5531262-5531281 None:intergenic 45.0%
CAACCTTCACAGCAAGGTTA+TGG - Chr1:5531303-5531322 MsG0180000400.01.T01:intron 45.0%
CACCAACTATGGATCACAAG+GGG - Chr1:5531257-5531276 MsG0180000400.01.T01:intron 45.0%
CACTGACCTGATGAATCGTA+AGG + Chr1:5525936-5525955 None:intergenic 45.0%
CAGTTTGTCTCGATCTGGTA+CGG - Chr1:5530529-5530548 MsG0180000400.01.T01:intron 45.0%
CATCCATATCACGGGTAACT+TGG + Chr1:5526735-5526754 None:intergenic 45.0%
CCACCAACTATGGATCACAA+GGG - Chr1:5531256-5531275 MsG0180000400.01.T01:intron 45.0%
CCATAACCAGACTGTGTTTG+AGG + Chr1:5531429-5531448 None:intergenic 45.0%
CCTCAAACACAGTCTGGTTA+TGG - Chr1:5531426-5531445 MsG0180000400.01.T01:intron 45.0%
CCTCAAACTCAAAAGCCAAG+TGG - Chr1:5531453-5531472 MsG0180000400.01.T01:intron 45.0%
CTGACCTGATGAATCGTAAG+GGG + Chr1:5525934-5525953 None:intergenic 45.0%
CTTGTTACTCGACGAATGAC+TGG - Chr1:5527390-5527409 MsG0180000400.01.T01:intron 45.0%
GAAATCCCTAATGGAAGGGT+TGG - Chr1:5526646-5526665 MsG0180000400.01.T01:CDS 45.0%
GATTCGTCAGCCATTGGATT+TGG + Chr1:5525666-5525685 None:intergenic 45.0%
GCAAAACTAGACTTGGCACA+TGG + Chr1:5528041-5528060 None:intergenic 45.0%
GCTTCTCAACAACCTGGTTA+TGG - Chr1:5530835-5530854 MsG0180000400.01.T01:intron 45.0%
GGTATGATGTCATCAAGGAC+TGG - Chr1:5529217-5529236 MsG0180000400.01.T01:intron 45.0%
GGTTATGGTCCTCCATCATA+TGG - Chr1:5531612-5531631 MsG0180000400.01.T01:intron 45.0%
GTGGATAGTTGGCAGCATTT+GGG + Chr1:5531347-5531366 None:intergenic 45.0%
GTTGGGAATATCCAGAAGGA+GGG + Chr1:5531560-5531579 None:intergenic 45.0%
GTTGTCCTCGTGTTATATGC+TGG - Chr1:5529702-5529721 MsG0180000400.01.T01:intron 45.0%
TAGAATATCCACCAGCTGAG+TGG + Chr1:5530939-5530958 None:intergenic 45.0%
TAGCTCCAGCATATAACACG+AGG + Chr1:5529710-5529729 None:intergenic 45.0%
TATTGCGATTCGTCAGCCAT+TGG + Chr1:5525672-5525691 None:intergenic 45.0%
TATTGGGTGATGTTTGGGGA+AGG - Chr1:5530177-5530196 MsG0180000400.01.T01:intron 45.0%
TCATATGGTCCTCCGTCATA+TGG - Chr1:5531627-5531646 MsG0180000400.01.T01:intron 45.0%
TCTGGTTGGGAATATCCAGA+AGG + Chr1:5531564-5531583 None:intergenic 45.0%
TGCCCCAAAATACAGTTCCT+GGG + Chr1:5532137-5532156 None:intergenic 45.0%
TGCTGCTGAGCATATGATGT+TGG + Chr1:5531186-5531205 None:intergenic 45.0%
TGGTCGGTATGATGTCATCA+AGG - Chr1:5529212-5529231 MsG0180000400.01.T01:intron 45.0%
TGTCGAAAAGAATCACACCC+AGG - Chr1:5532117-5532136 MsG0180000400.01.T01:CDS 45.0%
TTCGTCGTACTTGCGTTTCA+GGG + Chr1:5525577-5525596 None:intergenic 45.0%
TTGCCCCAAAATACAGTTCC+TGG + Chr1:5532138-5532157 None:intergenic 45.0%
TTGCTGAGGCACATTGTACT+GGG + Chr1:5530896-5530915 None:intergenic 45.0%
TTGGGAATATCCAGAAGGAG+GGG + Chr1:5531559-5531578 None:intergenic 45.0%
TTGTTGTAAGAAGGAGGAGG+AGG + Chr1:5525777-5525796 None:intergenic 45.0%
! AACCAGACTGTGTTTGAGGT+TGG + Chr1:5531425-5531444 None:intergenic 45.0%
! ATCCGCTGGTTATAACCAAC+CGG - Chr1:5531095-5531114 MsG0180000400.01.T01:CDS 45.0%
! CACACCCAGGAACTGTATTT+TGG - Chr1:5532130-5532149 MsG0180000400.01.T01:CDS 45.0%
! CACCCAGGAACTGTATTTTG+GGG - Chr1:5532132-5532151 MsG0180000400.01.T01:CDS 45.0%
! CATAACCTTGCTGTGAAGGT+TGG + Chr1:5531305-5531324 None:intergenic 45.0%
! CTACCATAACCTTGCTGTGA+AGG + Chr1:5531309-5531328 None:intergenic 45.0%
! CTGCTGATGGTAATGCAAGT+GGG - Chr1:5531733-5531752 MsG0180000400.01.T01:intron 45.0%
! GGTTTTTAACAGGCTGAGTC+TGG - Chr1:5527357-5527376 MsG0180000400.01.T01:intron 45.0%
! GTGATACCAATCTTTTGCGC+AGG - Chr1:5528994-5529013 MsG0180000400.01.T01:intron 45.0%
! GTTGTCCTCTTGTTGTATGC+TGG - Chr1:5529514-5529533 MsG0180000400.01.T01:intron 45.0%
! TATGACGGAGGACCATATGA+TGG + Chr1:5531627-5531646 None:intergenic 45.0%
! TCTGCTGATGGTAATGCAAG+TGG - Chr1:5531732-5531751 MsG0180000400.01.T01:intron 45.0%
! TTTTAACAGGCTGAGTCTGG+AGG - Chr1:5527360-5527379 MsG0180000400.01.T01:intron 45.0%
!! CTATGCAATCTGTCGGCTTT+CGG - Chr1:5528455-5528474 MsG0180000400.01.T01:intron 45.0%
!! CTTAAGGTGTCATTGTGAGC+TGG - Chr1:5526929-5526948 MsG0180000400.01.T01:CDS 45.0%
!! TAACCTGCATAAGCTTGCTG+AGG + Chr1:5530910-5530929 None:intergenic 45.0%
!!! AGCTGGTTTTTGGAGGGTTT+TGG - Chr1:5526946-5526965 MsG0180000400.01.T01:CDS 45.0%
!!! CATTGTGAGCTGGTTTTTGG+AGG - Chr1:5526939-5526958 MsG0180000400.01.T01:CDS 45.0%
!!! CCACTTGGCTTTTGAGTTTG+AGG + Chr1:5531456-5531475 None:intergenic 45.0%
!!! CCGTTTGACTGCCATTTTTC+AGG - Chr1:5529280-5529299 MsG0180000400.01.T01:intron 45.0%
!!! CTTGGCTTTTGAGTTTGAGG+GGG + Chr1:5531453-5531472 None:intergenic 45.0%
!!! TATTTTTTATTTGAAAATAT+AGG - Chr1:5527243-5527262 MsG0180000400.01.T01:intron 5.0%
AAGCTATGGGTCAGCTCAAG+AGG - Chr1:5531224-5531243 MsG0180000400.01.T01:intron 50.0%
AAGGTTGGACAGGTGGAACT+TGG + Chr1:5531290-5531309 None:intergenic 50.0%
ACATAGCCCTCCAAAGCTCT+TGG + Chr1:5526974-5526993 None:intergenic 50.0%
ACCTTGCTGAGAGTAACCAC+CGG + Chr1:5530777-5530796 None:intergenic 50.0%
ACTCGACGAATGACTGGACA+GGG - Chr1:5527396-5527415 MsG0180000400.01.T01:intron 50.0%
AGCCAACCTCAAACACAGTC+TGG - Chr1:5531420-5531439 MsG0180000400.01.T01:intron 50.0%
AGCTATGGGTCAGCTCAAGA+GGG - Chr1:5531225-5531244 MsG0180000400.01.T01:intron 50.0%
AGGAGGACCGTTGTCGAATT+TGG + Chr1:5525910-5525929 None:intergenic 50.0%
AGGTTGGACAGGTGGAACTT+GGG + Chr1:5531289-5531308 None:intergenic 50.0%
ATTCCTCTTCATCTTCCCCC+AGG - Chr1:5527859-5527878 MsG0180000400.01.T01:intron 50.0%
CAAAACATACCTCGCCACTG+AGG + Chr1:5527966-5527985 None:intergenic 50.0%
CAGCAACAGCAAAATCCTGG+TGG - Chr1:5531024-5531043 MsG0180000400.01.T01:CDS 50.0%
CCAAATAACAAGGTGGGCCT+AGG - Chr1:5527447-5527466 MsG0180000400.01.T01:intron 50.0%
CCATAACCTCCAGCAGCATT+AGG + Chr1:5531510-5531529 None:intergenic 50.0%
CCCTTGTGATCCATAGTTGG+TGG + Chr1:5531259-5531278 None:intergenic 50.0%
CCTAATGCTGCTGGAGGTTA+TGG - Chr1:5531507-5531526 MsG0180000400.01.T01:intron 50.0%
CCTCAGCAACAGCAAAATCC+TGG - Chr1:5531021-5531040 MsG0180000400.01.T01:CDS 50.0%
CCTGATGAATCGTAAGGGGA+AGG + Chr1:5525930-5525949 None:intergenic 50.0%
CCTTCCCCTTACGATTCATC+AGG - Chr1:5525927-5525946 MsG0180000400.01.T01:CDS 50.0%
CGAAAGCCGACAGATTGCAT+AGG + Chr1:5528457-5528476 None:intergenic 50.0%
CTCCATCATAGCTACCACCA+CGG + Chr1:5531764-5531783 None:intergenic 50.0%
CTCCCTCTGATGTCGTCAAA+CGG - Chr1:5525883-5525902 MsG0180000400.01.T01:three_prime_UTR 50.0%
CTGAGGATAACCAGCACCAT+AGG + Chr1:5531700-5531719 None:intergenic 50.0%
CTGCCAACTATCCACCACAA+GGG - Chr1:5531352-5531371 MsG0180000400.01.T01:intron 50.0%
CTGGAGGTTATGGTCAACCT+GGG - Chr1:5531517-5531536 MsG0180000400.01.T01:intron 50.0%
CTTGAGCTGACCCATAGCTT+GGG + Chr1:5531224-5531243 None:intergenic 50.0%
CTTGCTGAGGCACATTGTAC+TGG + Chr1:5530897-5530916 None:intergenic 50.0%
GAATATCCACCAGCTGAGTG+GGG + Chr1:5530937-5530956 None:intergenic 50.0%
GACCCTTGATGCGAATACGA+AGG + Chr1:5526613-5526632 None:intergenic 50.0%
GACTGTGATTGTCCGTATGC+AGG + Chr1:5531486-5531505 None:intergenic 50.0%
GAGTAACCACCGGACATTGA+TGG + Chr1:5530767-5530786 None:intergenic 50.0%
GATGAATCGTAAGGGGAAGG+AGG + Chr1:5525927-5525946 None:intergenic 50.0%
GATGAGTTCGAAATCAGCGG+TGG + Chr1:5525814-5525833 None:intergenic 50.0%
GATGGAGGACCATAACCAGA+AGG + Chr1:5531609-5531628 None:intergenic 50.0%
GGATATTCCCAACCAGAAGC+AGG - Chr1:5531567-5531586 MsG0180000400.01.T01:intron 50.0%
GGATGAGCATACCCTGATTG+TGG + Chr1:5531165-5531184 None:intergenic 50.0%
GGCACATTGTACTGGGAAGT+TGG + Chr1:5530889-5530908 None:intergenic 50.0%
GGCCAAACTACCACCAACTA+TGG - Chr1:5531246-5531265 MsG0180000400.01.T01:intron 50.0%
GGGACGTTGTTGTAAGAAGG+AGG + Chr1:5525783-5525802 None:intergenic 50.0%
GGGCAGGTATATTCTCAGGA+TGG - Chr1:5531117-5531136 MsG0180000400.01.T01:CDS 50.0%
GGTGGATAGTTGGCAGCATT+TGG + Chr1:5531348-5531367 None:intergenic 50.0%
GGTTGGGAATATCCAGAAGG+AGG + Chr1:5531561-5531580 None:intergenic 50.0%
GTACTTGCGTTTCAGGGAAG+TGG + Chr1:5525571-5525590 None:intergenic 50.0%
GTCCGTTTGACGACATCAGA+GGG + Chr1:5525888-5525907 None:intergenic 50.0%
GTTCGTCGTACTTGCGTTTC+AGG + Chr1:5525578-5525597 None:intergenic 50.0%
TACAATCAACCACCATCCGC+TGG - Chr1:5531081-5531100 MsG0180000400.01.T01:CDS 50.0%
TACTCGACGAATGACTGGAC+AGG - Chr1:5527395-5527414 MsG0180000400.01.T01:intron 50.0%
TACTTGCGTTTCAGGGAAGG+TGG + Chr1:5525705-5525724 None:intergenic 50.0%
TAGTTGGCAGCATTTGGGCT+AGG + Chr1:5531342-5531361 None:intergenic 50.0%
TATGCTCAGCAGCAAGGCTA+TGG - Chr1:5531192-5531211 MsG0180000400.01.T01:intron 50.0%
TATTGGGTGAAGTTTGGGGG+AGG - Chr1:5530099-5530118 MsG0180000400.01.T01:intron 50.0%
TCACAGTCACCTAATGCTGC+TGG - Chr1:5531498-5531517 MsG0180000400.01.T01:intron 50.0%
TCCATCATAGCTACCACCAC+GGG + Chr1:5531763-5531782 None:intergenic 50.0%
TCCTGAGAATATACCTGCCC+CGG + Chr1:5531117-5531136 None:intergenic 50.0%
TCGTACTTGCGTTTCAGGGA+AGG + Chr1:5525573-5525592 None:intergenic 50.0%
TCTTGAGCTGACCCATAGCT+TGG + Chr1:5531225-5531244 None:intergenic 50.0%
TGAGCATACCCTGATTGTGG+TGG + Chr1:5531162-5531181 None:intergenic 50.0%
TGATTCAATCCTCAGTGGCG+AGG - Chr1:5527954-5527973 MsG0180000400.01.T01:intron 50.0%
TGCCAACTATCCACCACAAG+GGG - Chr1:5531353-5531372 MsG0180000400.01.T01:intron 50.0%
TGGGAATATCCAGAAGGAGG+GGG + Chr1:5531558-5531577 None:intergenic 50.0%
TGGTTATAACCAGCGGATGG+TGG + Chr1:5531093-5531112 None:intergenic 50.0%
TGTACTGGGAAGTTGGACCA+GGG + Chr1:5530882-5530901 None:intergenic 50.0%
TGTGATTGTCCGTATGCAGG+CGG + Chr1:5531483-5531502 None:intergenic 50.0%
TTGAGCTGACCCATAGCTTG+GGG + Chr1:5531223-5531242 None:intergenic 50.0%
TTGTAAGCAGTCCCATCAGC+TGG + Chr1:5531060-5531079 None:intergenic 50.0%
TTGTACTGGGAAGTTGGACC+AGG + Chr1:5530883-5530902 None:intergenic 50.0%
TTTCAGTGGATGTGTCGCCT+GGG + Chr1:5527879-5527898 None:intergenic 50.0%
TTTGAGAGCCTGCTTCTGGT+TGG + Chr1:5531578-5531597 None:intergenic 50.0%
! AGAGCACCACCTTCTGGTTA+TGG - Chr1:5531597-5531616 MsG0180000400.01.T01:intron 50.0%
! GGTTGGTTATAACCAGCGGA+TGG + Chr1:5531096-5531115 None:intergenic 50.0%
! TATGATGGAGCACCTGCACA+GGG - Chr1:5531774-5531793 MsG0180000400.01.T01:intron 50.0%
! TCCGCTGGTTATAACCAACC+GGG - Chr1:5531096-5531115 MsG0180000400.01.T01:CDS 50.0%
! TCTCAGCAAGGTACCAAGCT+CGG - Chr1:5530785-5530804 MsG0180000400.01.T01:intron 50.0%
! TTGAGAGCCTGCTTCTGGTT+GGG + Chr1:5531577-5531596 None:intergenic 50.0%
! TTGGCTGCCATATGCTGCTT+GGG + Chr1:5531406-5531425 None:intergenic 50.0%
! TTTGGAGCCAAGAGCTTTGG+AGG - Chr1:5526964-5526983 MsG0180000400.01.T01:intron 50.0%
!! ACATCAGCTCTGAGGTGACT+TGG + Chr1:5531820-5531839 None:intergenic 50.0%
!! CCTAGGCCCACCTTGTTATT+TGG + Chr1:5527450-5527469 None:intergenic 50.0%
!! CTATGGTGCTGGTTATCCTC+AGG - Chr1:5531698-5531717 MsG0180000400.01.T01:intron 50.0%
!! TCTCAAAGAGCACCACCTTC+TGG - Chr1:5531591-5531610 MsG0180000400.01.T01:intron 50.0%
!! TTGGAGCCAAGAGCTTTGGA+GGG - Chr1:5526965-5526984 MsG0180000400.01.T01:intron 50.0%
!!! CCAGGATTTTGCTGTTGCTG+AGG + Chr1:5531024-5531043 None:intergenic 50.0%
!!! GGTTTTGGAGCCAAGAGCTT+TGG - Chr1:5526961-5526980 MsG0180000400.01.T01:CDS 50.0%
AAACCGGTGGTTCGTGAGTG+AGG + Chr1:5525608-5525627 None:intergenic 55.0%
AATATCCAGAAGGAGGGGGC+TGG + Chr1:5531554-5531573 None:intergenic 55.0%
AATGCAAGTGGGAATGCCCG+TGG - Chr1:5531744-5531763 MsG0180000400.01.T01:intron 55.0%
ACCGGGGCAGGTATATTCTC+AGG - Chr1:5531113-5531132 MsG0180000400.01.T01:CDS 55.0%
ACTCCTCACTCACGAACCAC+CGG - Chr1:5525602-5525621 MsG0180000400.01.T01:three_prime_UTR 55.0%
AGGTTGTTGAGAAGCGGCAG+GGG + Chr1:5530830-5530849 None:intergenic 55.0%
AGTTCGAAATCAGCGGTGGC+GGG + Chr1:5525810-5525829 None:intergenic 55.0%
ATATCCAGAAGGAGGGGGCT+GGG + Chr1:5531553-5531572 None:intergenic 55.0%
ATGGCTCAGCCCCAAGCTAT+GGG - Chr1:5531211-5531230 MsG0180000400.01.T01:intron 55.0%
CAGGCACCACATGGTTCCTA+TGG - Chr1:5531681-5531700 MsG0180000400.01.T01:intron 55.0%
CAGGCTGAGTCTGGAGGTAA+TGG - Chr1:5527366-5527385 MsG0180000400.01.T01:intron 55.0%
CAGGTTGTTGAGAAGCGGCA+GGG + Chr1:5530831-5530850 None:intergenic 55.0%
CAGTCACCTAATGCTGCTGG+AGG - Chr1:5531501-5531520 MsG0180000400.01.T01:intron 55.0%
CCACATGGTTCCTATGGTGC+TGG - Chr1:5531687-5531706 MsG0180000400.01.T01:intron 55.0%
CCAGCACCATAGGAACCATG+TGG + Chr1:5531690-5531709 None:intergenic 55.0%
CCTGTCCAACCTTCACAGCA+AGG - Chr1:5531297-5531316 MsG0180000400.01.T01:intron 55.0%
CGGTCAACCTGGTTATGGTC+AGG - Chr1:5531662-5531681 MsG0180000400.01.T01:intron 55.0%
CTTTCAGTGGATGTGTCGCC+TGG + Chr1:5527880-5527899 None:intergenic 55.0%
GACGGAGGACCATATGATGG+AGG + Chr1:5531624-5531643 None:intergenic 55.0%
GAGAATATACCTGCCCCGGT+TGG + Chr1:5531113-5531132 None:intergenic 55.0%
GAGTTCGAAATCAGCGGTGG+CGG + Chr1:5525811-5525830 None:intergenic 55.0%
GCAACCTCCCAAGCAGCATA+TGG - Chr1:5531396-5531415 MsG0180000400.01.T01:intron 55.0%
GCCCCAGCATATTCTGCTGA+TGG - Chr1:5531720-5531739 MsG0180000400.01.T01:intron 55.0%
GCTGCCAACTATCCACCACA+AGG - Chr1:5531351-5531370 MsG0180000400.01.T01:intron 55.0%
GCTGGAGGTTATGGTCAACC+TGG - Chr1:5531516-5531535 MsG0180000400.01.T01:intron 55.0%
GGAGGACCATAACCAGAAGG+TGG + Chr1:5531606-5531625 None:intergenic 55.0%
GGCTGCTCAGCCAAGTTATC+CGG - Chr1:5531374-5531393 MsG0180000400.01.T01:intron 55.0%
GGCTGTGCATAGCCATAACC+AGG + Chr1:5530850-5530869 None:intergenic 55.0%
GGGGGGACGTTGTTGTAAGA+AGG + Chr1:5525786-5525805 None:intergenic 55.0%
GGTCCGTTTGACGACATCAG+AGG + Chr1:5525889-5525908 None:intergenic 55.0%
GGTTATGGCTATGCACAGCC+TGG - Chr1:5530850-5530869 MsG0180000400.01.T01:intron 55.0%
GGTTATGGTCAGGCACCACA+TGG - Chr1:5531672-5531691 MsG0180000400.01.T01:intron 55.0%
GTGCCTCAGCAAGCTTATGC+AGG - Chr1:5530904-5530923 MsG0180000400.01.T01:CDS 55.0%
GTTGGCTGCCATATGCTGCT+TGG + Chr1:5531407-5531426 None:intergenic 55.0%
GTTGTGACCAGAGGAAACCC+AGG + Chr1:5529084-5529103 None:intergenic 55.0%
TAAGCAGTCCCATCAGCTGG+AGG + Chr1:5531057-5531076 None:intergenic 55.0%
TATGGCTCAGCCCCAAGCTA+TGG - Chr1:5531210-5531229 MsG0180000400.01.T01:intron 55.0%
TCATATGGTGCTCCTGCAGG+CGG - Chr1:5531642-5531661 MsG0180000400.01.T01:intron 55.0%
TCCGGTGGTTACTCTCAGCA+AGG - Chr1:5530773-5530792 MsG0180000400.01.T01:intron 55.0%
TGCTGTGAAGGTTGGACAGG+TGG + Chr1:5531297-5531316 None:intergenic 55.0%
TGGGAGGTTGCCGGATAACT+TGG + Chr1:5531387-5531406 None:intergenic 55.0%
TGGTTATAACCAACCGGGGC+AGG - Chr1:5531101-5531120 MsG0180000400.01.T01:CDS 55.0%
TGTGGTGCCTGACCATAACC+AGG + Chr1:5531672-5531691 None:intergenic 55.0%
TTCAGTGGATGTGTCGCCTG+GGG + Chr1:5527878-5527897 None:intergenic 55.0%
! CAGCATTTGGGCTAGGCTGT+TGG + Chr1:5531335-5531354 None:intergenic 55.0%
! CCCCGGTTGGTTATAACCAG+CGG + Chr1:5531100-5531119 None:intergenic 55.0%
! CCGCTGGTTATAACCAACCG+GGG - Chr1:5531097-5531116 MsG0180000400.01.T01:CDS 55.0%
! CCTTGCTGTGAAGGTTGGAC+AGG + Chr1:5531300-5531319 None:intergenic 55.0%
! CTATGATGGAGCACCTGCAC+AGG - Chr1:5531773-5531792 MsG0180000400.01.T01:intron 55.0%
! GCTCTTTGAGAGCCTGCTTC+TGG + Chr1:5531582-5531601 None:intergenic 55.0%
! TATGCTGCTTGGGAGGTTGC+CGG + Chr1:5531396-5531415 None:intergenic 55.0%
!! AGCCCCTTGTGGTGGATAGT+TGG + Chr1:5531358-5531377 None:intergenic 55.0%
!! CCTGCAGGAGCACCATATGA+CGG + Chr1:5531642-5531661 None:intergenic 55.0%
!! TGCAGTGGACTGGTCCCAAT+TGG + Chr1:5530962-5530981 None:intergenic 55.0%
AGAAGGAGGAGGAGGTCCGT+CGG + Chr1:5525769-5525788 None:intergenic 60.0%
AGACTGCTGGGCAGTTGCAG+TGG + Chr1:5530977-5530996 None:intergenic 60.0%
AGGAGGTCCGTCGGAGAAAC+CGG + Chr1:5525760-5525779 None:intergenic 60.0%
AGGGATGCCTGGGTTTCCTC+TGG - Chr1:5529074-5529093 MsG0180000400.01.T01:intron 60.0%
AGTGGTGCTCCGCCTGCATA+CGG - Chr1:5531471-5531490 MsG0180000400.01.T01:intron 60.0%
CCAGGTTGTTGAGAAGCGGC+AGG + Chr1:5530832-5530851 None:intergenic 60.0%
CCGTCATATGGTGCTCCTGC+AGG - Chr1:5531639-5531658 MsG0180000400.01.T01:intron 60.0%
CCTCCTCACTCACGAACCAC+CGG - Chr1:5525738-5525757 MsG0180000400.01.T01:three_prime_UTR 60.0%
CGACGAATGACTGGACAGGG+TGG - Chr1:5527399-5527418 MsG0180000400.01.T01:intron 60.0%
GACGACATCAGAGGGAGCAG+CGG + Chr1:5525880-5525899 None:intergenic 60.0%
GCAGAATATGCTGGGGCCTG+AGG + Chr1:5531717-5531736 None:intergenic 60.0%
GCAGGCGGTCAACCTGGTTA+TGG - Chr1:5531657-5531676 MsG0180000400.01.T01:intron 60.0%
GCCCGTGGTGGTAGCTATGA+TGG - Chr1:5531759-5531778 MsG0180000400.01.T01:intron 60.0%
GGTGGTTCGTGAGTGAGGAG+TGG + Chr1:5525603-5525622 None:intergenic 60.0%
GGTTATCCTCCCCACTCAGC+TGG - Chr1:5530925-5530944 MsG0180000400.01.T01:CDS 60.0%
GGTTGTTGAGAAGCGGCAGG+GGG + Chr1:5530829-5530848 None:intergenic 60.0%
GTCCTGCACCTCCAGCTGAT+GGG - Chr1:5531046-5531065 MsG0180000400.01.T01:CDS 60.0%
GTGGTTCGTGAGTGAGGAGG+TGG + Chr1:5525738-5525757 None:intergenic 60.0%
GTTGGACCAGGGTATGCTCC+AGG + Chr1:5530871-5530890 None:intergenic 60.0%
TATCCACCAGCTGAGTGGGG+AGG + Chr1:5530934-5530953 None:intergenic 60.0%
TATCCTCCCCACTCAGCTGG+TGG - Chr1:5530928-5530947 MsG0180000400.01.T01:CDS 60.0%
TCAGTGGATGTGTCGCCTGG+GGG + Chr1:5527877-5527896 None:intergenic 60.0%
TCGCCTGGGGGAAGATGAAG+AGG + Chr1:5527865-5527884 None:intergenic 60.0%
! AGGGAGAGGTGTGCTTCTGC+TGG - Chr1:5530499-5530518 MsG0180000400.01.T01:intron 60.0%
! CCTGCCGCTTCTCAACAACC+TGG - Chr1:5530829-5530848 MsG0180000400.01.T01:intron 60.0%
! GCTGCCATATGCTGCTTGGG+AGG + Chr1:5531403-5531422 None:intergenic 60.0%
! TAACCAGGTTGACCGCCTGC+AGG + Chr1:5531657-5531676 None:intergenic 60.0%
! TATGCAGGCGGAGCACCACT+TGG + Chr1:5531471-5531490 None:intergenic 60.0%
!! CGAACCACCGGTTTCTCCGA+CGG - Chr1:5525750-5525769 MsG0180000400.01.T01:three_prime_UTR 60.0%
!! GCAGGAGCACCATATGACGG+AGG + Chr1:5531639-5531658 None:intergenic 60.0%
AAGCTCGGCCACCCTCTAGC+TGG - Chr1:5530800-5530819 MsG0180000400.01.T01:intron 65.0%
ACCTGCACAGGGAGCTCAGC+AGG - Chr1:5531785-5531804 MsG0180000400.01.T01:intron 65.0%
AGCTAGAGGGTGGCCGAGCT+TGG + Chr1:5530801-5530820 None:intergenic 65.0%
AGCTCGGCCACCCTCTAGCT+GGG - Chr1:5530801-5530820 MsG0180000400.01.T01:intron 65.0%
AGGTCCGTCGGAGAAACCGG+TGG + Chr1:5525757-5525776 None:intergenic 65.0%
CCGGTGGTTCGTGAGTGAGG+AGG + Chr1:5525605-5525624 None:intergenic 65.0%
CTTGGCTGAGCAGCCCCTTG+TGG + Chr1:5531369-5531388 None:intergenic 65.0%
GCAAGTGGGAATGCCCGTGG+TGG - Chr1:5531747-5531766 MsG0180000400.01.T01:intron 65.0%
GCACAGCCTGGAGCATACCC+TGG - Chr1:5530862-5530881 MsG0180000400.01.T01:intron 65.0%
GCTGGGCAGTTGCAGTGGAC+TGG + Chr1:5530972-5530991 None:intergenic 65.0%
GGCACCAGAGAGGAGACGAG+CGG + Chr1:5525859-5525878 None:intergenic 65.0%
GGCTGGGAAGGAGGATACCC+AGG + Chr1:5531537-5531556 None:intergenic 65.0%
GGTCCTGCACCTCCAGCTGA+TGG - Chr1:5531045-5531064 MsG0180000400.01.T01:CDS 65.0%
! GTCCCATCAGCTGGAGGTGC+AGG + Chr1:5531051-5531070 None:intergenic 65.0%
!! AAATCAGCGGTGGCGGGAGG+GGG + Chr1:5525804-5525823 None:intergenic 65.0%
!! CGAAATCAGCGGTGGCGGGA+GGG + Chr1:5525806-5525825 None:intergenic 65.0%
!! GAAATCAGCGGTGGCGGGAG+GGG + Chr1:5525805-5525824 None:intergenic 65.0%
!! TCGAAATCAGCGGTGGCGGG+AGG + Chr1:5525807-5525826 None:intergenic 65.0%
AGGGAGCAGCGGCACCAGAG+AGG + Chr1:5525869-5525888 None:intergenic 70.0%
CCAGAAGGAGGGGGCTGGGA+AGG + Chr1:5531549-5531568 None:intergenic 70.0%
CCTTCCCAGCCCCCTCCTTC+TGG - Chr1:5531546-5531565 MsG0180000400.01.T01:intron 70.0%
GAAGGAGGGGGCTGGGAAGG+AGG + Chr1:5531546-5531565 None:intergenic 70.0%
GCAGGGGGAGCCCAGCTAGA+GGG + Chr1:5530814-5530833 None:intergenic 70.0%
GCCTGCTGAGCTCCCTGTGC+AGG + Chr1:5531789-5531808 None:intergenic 70.0%
GCTCCTGCAGGCGGTCAACC+TGG - Chr1:5531651-5531670 MsG0180000400.01.T01:intron 70.0%
GGCTGAGCAGCCCCTTGTGG+TGG + Chr1:5531366-5531385 None:intergenic 70.0%
GTCGCCGCTCGTCTCCTCTC+TGG - Chr1:5525852-5525871 MsG0180000400.01.T01:three_prime_UTR 70.0%
! GCTGGAGGTGCAGGACCACC+AGG + Chr1:5531042-5531061 None:intergenic 70.0%
!! AATCAGCGGTGGCGGGAGGG+GGG + Chr1:5525803-5525822 None:intergenic 70.0%
GGCAGGGGGAGCCCAGCTAG+AGG + Chr1:5530815-5530834 None:intergenic 75.0%
GGGGGAGCCCAGCTAGAGGG+TGG + Chr1:5530811-5530830 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 5525540 5532202 5525540 ID=MsG0180000400.01;Name=MsG0180000400.01
Chr1 mRNA 5525540 5532202 5525540 ID=MsG0180000400.01.T01;Parent=MsG0180000400.01;Name=MsG0180000400.01.T01;_AED=0.30;_eAED=0.31;_QI=0|0.8|0.66|1|1|1|6|366|678
Chr1 exon 5531794 5532202 5531794 ID=MsG0180000400.01.T01:exon:2705;Parent=MsG0180000400.01.T01
Chr1 exon 5530899 5531167 5530899 ID=MsG0180000400.01.T01:exon:2706;Parent=MsG0180000400.01.T01
Chr1 exon 5530284 5530373 5530284 ID=MsG0180000400.01.T01:exon:2707;Parent=MsG0180000400.01.T01
Chr1 exon 5530109 5530180 5530109 ID=MsG0180000400.01.T01:exon:2708;Parent=MsG0180000400.01.T01
Chr1 exon 5529767 5529886 5529767 ID=MsG0180000400.01.T01:exon:2709;Parent=MsG0180000400.01.T01
Chr1 exon 5525540 5526982 5525540 ID=MsG0180000400.01.T01:exon:2710;Parent=MsG0180000400.01.T01
Chr1 CDS 5531794 5532202 5531794 ID=MsG0180000400.01.T01:cds;Parent=MsG0180000400.01.T01
Chr1 CDS 5530899 5531167 5530899 ID=MsG0180000400.01.T01:cds;Parent=MsG0180000400.01.T01
Chr1 CDS 5530284 5530373 5530284 ID=MsG0180000400.01.T01:cds;Parent=MsG0180000400.01.T01
Chr1 CDS 5530109 5530180 5530109 ID=MsG0180000400.01.T01:cds;Parent=MsG0180000400.01.T01
Chr1 CDS 5529767 5529886 5529767 ID=MsG0180000400.01.T01:cds;Parent=MsG0180000400.01.T01
Chr1 CDS 5525906 5526982 5525906 ID=MsG0180000400.01.T01:cds;Parent=MsG0180000400.01.T01
Chr1 three_prime_UTR 5525540 5525905 5525540 ID=MsG0180000400.01.T01:three_prime_utr;Parent=MsG0180000400.01.T01
Gene Sequence

>MsG0180000400.01.T01

ATGGTGACGAATCGCATACGACTCAACTCCACTTCCCTGAAACGCAAGTACGACGAACAACCACTCCTCACTCACGAACCACCGGTTTCTTTCTTCTTCTTCAATCCGATTCCAATTCCAATTCCAAATCCAATGGCTGACGAATCGCAATACGACTCAACTCCACCTTCCCTGAAACGCAAGTACGACGAACAACCACCTCCTCACTCACGAACCACCGGTTTCTCCGACGGACCTCCTCCTCCTTCTTACAACAACGTCCCCCCTCCCGCCACCGCTGATTTCGAACTCATCAAACAACGCGCTCAACAAGTCGCCGCTCGTCTCCTCTCTGGTGCCGCTGCTCCCTCTGATGTCGTCAAACGGACCAAATTCGACAACGGTCCTCCTTCCCCTTACGATTCATCAGATTTGAAGAGTCAATATGCAGCTCCTATGAGTATACCTTCGTATTCGCATCAAGGGTCAAGCAAGAAGATTGAAATCCCTAATGGAAGGGTTGGTGTTATTATTGGAAAAGGTGGAGAAACTATCAAATATCTTCAGTTGCAATCTGGTGCAAAAATCCAAGTTACCCGTGATATGGATGCTGATCCTAATTCTCCAAATAGATTAGTTGAGCTTACTGGTACTTCTGATGCTATTGCTGAGAAACTCATCAATGAATTTCTTGCTGAGGCTGAGTCTGGAGGTAATGGACTTGTTACTCGACGAATGACTGGACAGGGTGGCGCTGATGAGTTTTCCATGAAGATTCCAAATAACAAGGTTTGTCTTATCATCGGTAAAGGTGGAGAAACTATAAAGAGTATGCAAGCTACAACTGGAGCAAGAATTCAGGTGATTCCTCTTCATCTTCCCCCAGGCGACACATCCACTGAAAGAACATTAAAAATTGAAGGGACCTCTGAACAAATTGAATCTGCAAAACAATTGGTTGATTCAATCCTCAGTGGCGAGAAATCCATCAATGTCCGGTGGTTACTCTCAGCAAGGTACCAAGCTCGGCCACCCTCTAGCTGGGCTCCCCCTGCCGCTTCTCAACAACCTGGTTATGGCTATGCACAGCCTGGAGCATACCCTGGTCCAACTTCCCAGTACAATGTGCCTCAGCAAGCTTATGCAGGTTATCCTCCCCACTCAGCTGGTGGATATTCTACCAATTGGGACCAGTCCACTGCAACTGCCCAGCAGTCTACCTATGATTATTATAATCAACAGCCTCAGCAACAGCAAAATCCTGGTGGTCCTGCACCTCCAGCTGATGGGACTGCTTACAATTACAATCAACCACCATCCGCTGGTTATAACCAACCGGGGCAGGTATATTCTCAGGATGGCTATGGTGCATATCAACAACCACCACAATCAGGGTATGCTCATCCAACATCATATGCTCAGCAGCAAGGCTATGGCTCAGCCCCAAGCTATGGGTCAGCTCAAGAGGGCCAAACTACCACCAACTATGGATCACAAGGGGATTCAACCCAAGTTCCACCTGTCCAACCTTCACAGCAAGGTTATGGTAGCAGCCAACAGCCTAGCCCAAATGCTGCCAACTATCCACCACAAGGGGCTGCTCAGCCAAGTTATCCGGCAACCTCCCAAGCAGCATATGGCAGCCAACCTCAAACACAGTCTGGTTATGGACCCCCTCAAACTCAAAAGCCAAGTGGTGCTCCGCCTGCATACGGACAATCACAGTCACCTAATGCTGCTGGAGGTTATGGTCAACCTGGGTATCCTCCTTCCCAGCCCCCTCCTTCTGGATATTCCCAACCAGAAGCAGGCTCTCAAAGAGCACCACCTTCTGGTTATGGTCCTCCATCATATGGTCCTCCGTCATATGGTGCTCCTGCAGGCGGTCAACCTGGTTATGGTCAGGCACCACATGGTTCCTATGGTGCTGGTTATCCTCAGGCCCCAGCATATTCTGCTGATGGTAATGCAAGTGGGAATGCCCGTGGTGGTAGCTATGATGGAGCACCTGCACAGGGAGCTCAGCAGGCTAGTGTTGCCAAGTCACCTCAGAGCTGA
Protein sequence

>MsG0180000400.01.T01

MVTNRIRLNSTSLKRKYDEQPLLTHEPPVSFFFFNPIPIPIPNPMADESQYDSTPPSLKRKYDEQPPPHSRTTGFSDGPPPPSYNNVPPPATADFELIKQRAQQVAARLLSGAAAPSDVVKRTKFDNGPPSPYDSSDLKSQYAAPMSIPSYSHQGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPNRLVELTGTSDAIAEKLINEFLAEAESGGNGLVTRRMTGQGGADEFSMKIPNNKVCLIIGKGGETIKSMQATTGARIQVIPLHLPPGDTSTERTLKIEGTSEQIESAKQLVDSILSGEKSINVRWLLSARYQARPPSSWAPPAASQQPGYGYAQPGAYPGPTSQYNVPQQAYAGYPPHSAGGYSTNWDQSTATAQQSTYDYYNQQPQQQQNPGGPAPPADGTAYNYNQPPSAGYNQPGQVYSQDGYGAYQQPPQSGYAHPTSYAQQQGYGSAPSYGSAQEGQTTTNYGSQGDSTQVPPVQPSQQGYGSSQQPSPNAANYPPQGAAQPSYPATSQAAYGSQPQTQSGYGPPQTQKPSGAPPAYGQSQSPNAAGGYGQPGYPPSQPPPSGYSQPEAGSQRAPPSGYGPPSYGPPSYGAPAGGQPGYGQAPHGSYGAGYPQAPAYSADGNASGNARGGSYDGAPAQGAQQASVAKSPQS*