AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004689.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004689.01.T01 MTR_1g484830 97.033 337 10 0 1 337 1 337 0.0 647
MsG0180004689.01.T01 MTR_7g012670 75.000 56 12 1 136 191 2 55 9.19e-18 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004689.01.T01 AT5G26770 69.670 333 96 2 7 337 6 335 1.97e-162 457
MsG0180004689.01.T01 AT5G26770 69.670 333 96 2 7 337 6 335 1.97e-162 457
MsG0180004689.01.T01 AT5G26770 65.169 356 96 3 7 337 6 358 5.09e-157 444
MsG0180004689.01.T01 AT5G26770 65.169 356 96 3 7 337 6 358 5.09e-157 444
MsG0180004689.01.T01 AT5G26770 63.664 333 96 3 7 337 6 315 1.01e-142 406
MsG0180004689.01.T01 AT1G09470 60.856 327 127 1 11 337 11 336 7.25e-135 387
MsG0180004689.01.T01 AT5G26770 68.929 280 87 0 7 286 6 285 5.56e-133 380
MsG0180004689.01.T01 AT3G05830 62.722 338 123 3 1 337 1 336 3.02e-131 378
MsG0180004689.01.T01 AT3G05830 62.722 338 123 3 1 337 1 336 3.02e-131 378
MsG0180004689.01.T01 AT1G09470 59.633 327 130 2 11 337 11 335 5.28e-128 370
MsG0180004689.01.T01 AT1G09470 59.633 327 130 2 11 337 11 335 5.28e-128 370
MsG0180004689.01.T01 AT3G05830 60.399 351 123 4 1 337 1 349 1.07e-127 369
MsG0180004689.01.T01 AT1G09483 67.925 106 32 2 233 337 1 105 2.68e-42 142

Find 80 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGTTGTGTCTTTGGCTTC+TGG 0.148397 1:-81254365 MsG0180004689.01.T01:CDS
TTCAGTTGATCCTTTGTTAA+AGG 0.155858 1:-81254420 MsG0180004689.01.T01:CDS
AAAAGCAAAATCAGAATTTC+TGG 0.195429 1:-81251464 MsG0180004689.01.T01:CDS
TCGGAGAAACGTTGTGTCTT+TGG 0.246631 1:-81254372 MsG0180004689.01.T01:CDS
TAGAATTGAGCGTGATATTA+TGG 0.255210 1:-81252290 MsG0180004689.01.T01:CDS
TTCATCTTCTCTATATTCTT+AGG 0.270281 1:+81252202 None:intergenic
TTGTGAACTGCGAAAATTAT+TGG 0.291074 1:-81252236 MsG0180004689.01.T01:CDS
AACAAACTTGAGAAGGTATT+AGG 0.291512 1:+81251331 None:intergenic
TGGTAAATTGCAGAAGAAAT+TGG 0.293833 1:-81254027 MsG0180004689.01.T01:CDS
AAGATTATGGAAATGGAAAT+TGG 0.308528 1:-81254047 MsG0180004689.01.T01:CDS
AGAGACAAATGCAAAGATTA+TGG 0.320596 1:-81254060 MsG0180004689.01.T01:CDS
GTCTTTGGCTTCTGGGTTGA+AGG 0.322574 1:-81254357 MsG0180004689.01.T01:CDS
ACGTTGTGTCTTTGGCTTCT+GGG 0.356362 1:-81254364 MsG0180004689.01.T01:CDS
ACCGGTTTCTGCGTTTGAAC+TGG 0.365809 1:+81255170 None:intergenic
GAAACAACGGCGTGCTGATC+AGG 0.366383 1:-81251953 MsG0180004689.01.T01:CDS
AAATGCAAAGATTATGGAAA+TGG 0.386311 1:-81254054 MsG0180004689.01.T01:CDS
CAGAATTTCTGGGACACCTC+TGG 0.394928 1:-81251453 MsG0180004689.01.T01:CDS
GAAGGAGCTTCGAAGTCGTT+TGG 0.405419 1:-81254339 MsG0180004689.01.T01:CDS
AATATTGATTCAGCACATAA+AGG 0.405506 1:-81252551 MsG0180004689.01.T01:intron
TAATTTACAGAAGGATCTTA+AGG 0.405711 1:-81252353 MsG0180004689.01.T01:CDS
ATGGAGGCTCTTGCAAAATC+CGG 0.409298 1:-81252271 MsG0180004689.01.T01:CDS
GAGTGTGATGTGATGAGTTT+AGG 0.424564 1:+81255297 None:intergenic
GAATAAGCTACTGGTTGTTA+AGG 0.427044 1:-81252182 MsG0180004689.01.T01:CDS
GAAGAAGAGAGTGTTGAAGT+TGG 0.430394 1:-81251926 MsG0180004689.01.T01:CDS
AACATCAAAATCAGATCCTA+TGG 0.435412 1:+81254534 None:intergenic
TCGAAGTCGTTTGGCTTCGC+AGG 0.437680 1:-81254330 MsG0180004689.01.T01:CDS
TTAACATCATGTCTGCTCAT+TGG 0.441311 1:-81252129 MsG0180004689.01.T01:CDS
ATCAACTGAAGCTTGTTTGT+CGG 0.455999 1:+81254433 None:intergenic
AGTTAGAGTTTCTTTAACAT+AGG 0.456089 1:+81254301 None:intergenic
TCCAGTTCAAACGCAGAAAC+CGG 0.458212 1:-81255171 MsG0180004689.01.T01:intron
ATGCAGTATGTAGCAGCATC+AGG 0.463598 1:-81251232 MsG0180004689.01.T01:three_prime_UTR
TTGATGTTTACATACAAAAG+AGG 0.471456 1:-81254519 MsG0180004689.01.T01:five_prime_UTR
CTCAGACGCGCAAACTTCAA+AGG 0.472445 1:-81251879 MsG0180004689.01.T01:CDS
GTCTATGTCCATGCTAGTCT+TGG 0.474536 1:-81251415 MsG0180004689.01.T01:CDS
TGATGAAATAGTTAGACTTA+AGG 0.477477 1:-81252158 MsG0180004689.01.T01:CDS
GACTAAGGAATTAGAATCAC+AGG 0.477639 1:-81252098 MsG0180004689.01.T01:intron
ACAAGGATTCTTGTATATAG+AGG 0.478425 1:-81251356 MsG0180004689.01.T01:three_prime_UTR
TGTTTATCGCATCATTAAGC+TGG 0.479296 1:-81251134 MsG0180004689.01.T01:three_prime_UTR
TTCAAACTCTTCTGCTGAGA+AGG 0.479809 1:-81253979 MsG0180004689.01.T01:intron
TGGAGGCTCTTGCAAAATCC+GGG 0.480155 1:-81252270 MsG0180004689.01.T01:CDS
AAGTTTCAATTCAACAAAGT+TGG 0.483442 1:-81254485 MsG0180004689.01.T01:five_prime_UTR
CGAGCAGATGGGAGAGCGAC+GGG 0.486908 1:-81251550 MsG0180004689.01.T01:intron
TTCACAATCCTTGTTCTCCC+CGG 0.489475 1:+81252252 None:intergenic
GAGCTTAAAGATCAATTAGC+AGG 0.491351 1:-81251513 MsG0180004689.01.T01:CDS
TGCAAAATCCGGGGAGAACA+AGG 0.494274 1:-81252260 MsG0180004689.01.T01:CDS
AGGAAAGCAACAAACAGTTT+CGG 0.509158 1:-81251493 MsG0180004689.01.T01:CDS
GATTCAGCACATAAAGGAGT+TGG 0.509544 1:-81252545 MsG0180004689.01.T01:intron
CTCCTAAAACAAACTTGAGA+AGG 0.510533 1:+81251324 None:intergenic
ATTTATAGGACTTTGATCCC+TGG 0.512765 1:-81254558 MsG0180004689.01.T01:intron
TCATTCAAATCCTTTAACAA+AGG 0.512856 1:+81254410 None:intergenic
TATGTCCATGCTAGTCTTGG+TGG 0.514229 1:-81251412 MsG0180004689.01.T01:CDS
ACTGCGAAAATTATTGGATG+AGG 0.521280 1:-81252230 MsG0180004689.01.T01:CDS
TCATTGGAAGCTCAAGACTA+AGG 0.525004 1:-81252113 MsG0180004689.01.T01:CDS
ACATACAAAAGAGGCAAAAG+AGG 0.527488 1:-81254510 MsG0180004689.01.T01:five_prime_UTR
GACTTTGATCCCTGGTCCAT+AGG 0.536840 1:-81254550 MsG0180004689.01.T01:five_prime_UTR
TAAAGAAACTCTAACTAGAC+AGG 0.538869 1:-81254294 MsG0180004689.01.T01:intron
AAATCATTCCTTTGTTCACA+AGG 0.539030 1:-81251373 MsG0180004689.01.T01:three_prime_UTR
AGAGAAGATGAATAAGCTAC+TGG 0.539996 1:-81252191 MsG0180004689.01.T01:CDS
AAAGCAAAATCAGAATTTCT+GGG 0.542452 1:-81251463 MsG0180004689.01.T01:CDS
AGAGAACTGATCTGAAGAAG+AGG 0.547772 1:+81255224 None:intergenic
ACAGAAGGATCTTAAGGCAA+GGG 0.550488 1:-81252347 MsG0180004689.01.T01:CDS
AAAATCAGATCCTATGGACC+AGG 0.554506 1:+81254540 None:intergenic
TACAGAAGGATCTTAAGGCA+AGG 0.554800 1:-81252348 MsG0180004689.01.T01:CDS
CTGCGCTGATTGAGCTGATG+CGG 0.556870 1:+81252471 None:intergenic
TCAGACGCGCAAACTTCAAA+GGG 0.558261 1:-81251878 MsG0180004689.01.T01:intron
TTGTTTGTCGGAAATTGACA+TGG 0.561919 1:+81254445 None:intergenic
GCAGCTTGATAATTTACAGA+AGG 0.573568 1:-81252362 MsG0180004689.01.T01:CDS
GAAGTTGGAATTCTGTCTGC+AGG 0.579748 1:-81251911 MsG0180004689.01.T01:CDS
TCGAGCAGATGGGAGAGCGA+CGG 0.608995 1:-81251551 MsG0180004689.01.T01:intron
TATGTGAAACTAATCTGTGT+AGG 0.611066 1:-81251184 MsG0180004689.01.T01:three_prime_UTR
TAGTTCTCTAAGAGAGCATG+AGG 0.613433 1:-81252407 MsG0180004689.01.T01:CDS
ACAAGAATCCTTGTGAACAA+AGG 0.613946 1:+81251365 None:intergenic
GAGGAACGCGTAATTAGACT+AGG 0.621102 1:-81252388 MsG0180004689.01.T01:CDS
AAATACCACCAAGACTAGCA+TGG 0.627363 1:+81251407 None:intergenic
AATTGAGCGTGATATTATGG+AGG 0.642028 1:-81252287 MsG0180004689.01.T01:CDS
TGTTTGTCGGAAATTGACAT+GGG 0.647558 1:+81254446 None:intergenic
AAATCAGATCCTATGGACCA+GGG 0.663062 1:+81254541 None:intergenic
GCTCGTAATAGCTAGAGCAA+CGG 0.671851 1:-81252506 MsG0180004689.01.T01:CDS
AAACACAGTTGGAGAAACAA+CGG 0.679696 1:-81251966 MsG0180004689.01.T01:intron
GGAGGCTCTTGCAAAATCCG+GGG 0.684234 1:-81252269 MsG0180004689.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATAATAATGAAGA+TGG + Chr1:81251392-81251411 None:intergenic 10.0%
!! ATAATAATAACAAAAAGTTT+AGG - Chr1:81252808-81252827 MsG0180004689.01.T01:intron 10.0%
!! ATCTTCATTATTATTATTAT+TGG - Chr1:81251391-81251410 MsG0180004689.01.T01:exon 10.0%
!! TCAAAAAATTAGAAAATAAT+TGG + Chr1:81251331-81251350 None:intergenic 10.0%
!! AAAAGAATAATAATAAGGTA+AGG + Chr1:81252475-81252494 None:intergenic 15.0%
!! TATAAAAGAAAAAAGGTAAT+AGG + Chr1:81252791-81252810 None:intergenic 15.0%
!!! AAATTTTTGTATCAGTTTTA+CGG - Chr1:81253165-81253184 MsG0180004689.01.T01:intron 15.0%
!!! ACATATTTTACTTAACAATA+AGG - Chr1:81252895-81252914 MsG0180004689.01.T01:intron 15.0%
!!! TTAATTCTTCAATTTTTTCT+AGG - Chr1:81253031-81253050 MsG0180004689.01.T01:intron 15.0%
!! ACTTATAAGATATGATGTAT+AGG + Chr1:81253533-81253552 None:intergenic 20.0%
!! ATGATAAAAAACAAAGCTTT+CGG - Chr1:81252017-81252036 MsG0180004689.01.T01:intron 20.0%
!! ATTCAATTGCTTTCATTTAT+AGG - Chr1:81251836-81251855 MsG0180004689.01.T01:intron 20.0%
!! CCATGAAAAGAATAATAATA+AGG + Chr1:81252480-81252499 None:intergenic 20.0%
!! GAACTTATAAATAAGAATTC+TGG + Chr1:81253354-81253373 None:intergenic 20.0%
!! TATCTAAATGCATAAATTCT+TGG + Chr1:81254688-81254707 None:intergenic 20.0%
!! TTTAAAGGTTAATGCATAAT+TGG + Chr1:81253599-81253618 None:intergenic 20.0%
!! TTTGAATTCCAATGAAAATT+TGG + Chr1:81251559-81251578 None:intergenic 20.0%
!!! AAATTAATTTTAATGTAGGG+AGG - Chr1:81253102-81253121 MsG0180004689.01.T01:intron 20.0%
!!! AAGTTACAATTTTTTTAGCA+TGG + Chr1:81252217-81252236 None:intergenic 20.0%
!!! AATAACTTGTTTTCATGAAA+AGG + Chr1:81251687-81251706 None:intergenic 20.0%
!!! ATAACTTGTTTTCATGAAAA+GGG + Chr1:81251686-81251705 None:intergenic 20.0%
!!! ATAGTTTATTTTTGCTTACA+TGG - Chr1:81251748-81251767 MsG0180004689.01.T01:intron 20.0%
!!! CCTTATTATTATTCTTTTCA+TGG - Chr1:81252477-81252496 MsG0180004689.01.T01:CDS 20.0%
!!! TTATACAAGTTTTCATTGAT+GGG - Chr1:81254735-81254754 MsG0180004689.01.T01:intron 20.0%
!!! TTATGGATTATATTTTTCAC+AGG - Chr1:81252321-81252340 MsG0180004689.01.T01:CDS 20.0%
!!! TTTTTCTTCATTAAGGAATA+AGG + Chr1:81253684-81253703 None:intergenic 20.0%
!!! TTTTTTAGTACTGCAATTTA+TGG - Chr1:81252304-81252323 MsG0180004689.01.T01:CDS 20.0%
! AAAAGCAAAATCAGAATTTC+TGG - Chr1:81254944-81254963 MsG0180004689.01.T01:intron 25.0%
! AAAGCAAAATCAGAATTTCT+GGG - Chr1:81254945-81254964 MsG0180004689.01.T01:intron 25.0%
! AAATGCAAAGATTATGGAAA+TGG - Chr1:81252354-81252373 MsG0180004689.01.T01:CDS 25.0%
! AAGATTATGGAAATGGAAAT+TGG - Chr1:81252361-81252380 MsG0180004689.01.T01:CDS 25.0%
! AAGTTTCAATTCAACAAAGT+TGG - Chr1:81251923-81251942 MsG0180004689.01.T01:CDS 25.0%
! AATCCATCAATGAACTTAAA+TGG + Chr1:81254419-81254438 None:intergenic 25.0%
! AATTAACATCCTAGTTAGAA+AGG + Chr1:81253017-81253036 None:intergenic 25.0%
! AATTCAGTTCATATCTACAA+GGG + Chr1:81252953-81252972 None:intergenic 25.0%
! AGTAACAAGATCCTAAAAAA+TGG + Chr1:81252698-81252717 None:intergenic 25.0%
! AGTTAGAGTTTCTTTAACAT+AGG + Chr1:81252110-81252129 None:intergenic 25.0%
! ATTAACATCCTAGTTAGAAA+GGG + Chr1:81253016-81253035 None:intergenic 25.0%
! CTAGAGTACAATCTATTTAA+AGG + Chr1:81253614-81253633 None:intergenic 25.0%
! GTAACAAGATCCTAAAAAAT+GGG + Chr1:81252697-81252716 None:intergenic 25.0%
! TAATTTACAGAAGGATCTTA+AGG - Chr1:81254055-81254074 MsG0180004689.01.T01:CDS 25.0%
! TATATGAACGAGTAATAACA+CGG + Chr1:81254357-81254376 None:intergenic 25.0%
! TCAGTTTCATCATAATTGAA+AGG + Chr1:81251499-81251518 None:intergenic 25.0%
! TCATTCAAATCCTTTAACAA+AGG + Chr1:81252001-81252020 None:intergenic 25.0%
! TGATGAAATAGTTAGACTTA+AGG - Chr1:81254250-81254269 MsG0180004689.01.T01:intron 25.0%
! TTCATCTTCTCTATATTCTT+AGG + Chr1:81254209-81254228 None:intergenic 25.0%
! TTGATGTTTACATACAAAAG+AGG - Chr1:81251889-81251908 MsG0180004689.01.T01:CDS 25.0%
!! AATCCATTTAAGTTCATTGA+TGG - Chr1:81254413-81254432 MsG0180004689.01.T01:CDS 25.0%
!! AGTATCAATCATTCTACTTT+TGG - Chr1:81252244-81252263 MsG0180004689.01.T01:CDS 25.0%
!! CTTATACAAGTTTTCATTGA+TGG - Chr1:81254734-81254753 MsG0180004689.01.T01:intron 25.0%
!! GAATTATTTGACCATTGTTT+TGG - Chr1:81254662-81254681 MsG0180004689.01.T01:intron 25.0%
!! TGTCATCTTTTTCTTCATTA+AGG + Chr1:81253691-81253710 None:intergenic 25.0%
!!! AATATTGATTCAGCACATAA+AGG - Chr1:81253857-81253876 MsG0180004689.01.T01:intron 25.0%
!!! ATAATTTTTCTAGCCAGTAA+TGG - Chr1:81253449-81253468 MsG0180004689.01.T01:intron 25.0%
!!! ATTAGTCTTAAGACTTTCTT+TGG + Chr1:81252854-81252873 None:intergenic 25.0%
!!! GAAATTCTGATTTTGCTTTT+CGG + Chr1:81254944-81254963 None:intergenic 25.0%
!!! TTGTTCTGTTTTTCTCTTTT+TGG - Chr1:81252191-81252210 MsG0180004689.01.T01:CDS 25.0%
AAATCATTCCTTTGTTCACA+AGG - Chr1:81255035-81255054 MsG0180004689.01.T01:intron 30.0%
AACAAAAAGTTTAGGTGAGA+TGG - Chr1:81252816-81252835 MsG0180004689.01.T01:intron 30.0%
AACATCAAAATCAGATCCTA+TGG + Chr1:81251877-81251896 None:intergenic 30.0%
AAGAAACACTTGGACAAATA+AGG - Chr1:81254707-81254726 MsG0180004689.01.T01:intron 30.0%
ACAAGGATTCTTGTATATAG+AGG - Chr1:81255052-81255071 MsG0180004689.01.T01:intron 30.0%
AGAGACAAATGCAAAGATTA+TGG - Chr1:81252348-81252367 MsG0180004689.01.T01:CDS 30.0%
AGGAAATGCTTAAATGTTTG+TGG - Chr1:81254593-81254612 MsG0180004689.01.T01:intron 30.0%
ATAAGTGACTTCAATAGTGA+AGG + Chr1:81253376-81253395 None:intergenic 30.0%
ATATGAACGAGTAATAACAC+GGG + Chr1:81254356-81254375 None:intergenic 30.0%
ATTACTCGTTCATATACTCA+GGG - Chr1:81254361-81254380 MsG0180004689.01.T01:CDS 30.0%
CATGGTTTATGAATATCTCT+TGG - Chr1:81252495-81252514 MsG0180004689.01.T01:CDS 30.0%
CTTCGAACTTCAAAAAGAAT+TGG - Chr1:81253968-81253987 MsG0180004689.01.T01:intron 30.0%
GAATTCAGTTCATATCTACA+AGG + Chr1:81252954-81252973 None:intergenic 30.0%
GAGTATATTCAATAAGGACT+GGG - Chr1:81253425-81253444 MsG0180004689.01.T01:intron 30.0%
GCATTTAGATAAGAAACACT+TGG - Chr1:81254697-81254716 MsG0180004689.01.T01:intron 30.0%
GGGTCATTTGAATATACAAT+TGG + Chr1:81253229-81253248 None:intergenic 30.0%
TAAAGAAACTCTAACTAGAC+AGG - Chr1:81252114-81252133 MsG0180004689.01.T01:CDS 30.0%
TAAATTCTTGGCCAAAACAA+TGG + Chr1:81254676-81254695 None:intergenic 30.0%
TAAGGTCTTTACATTAGTAG+CGG - Chr1:81252913-81252932 MsG0180004689.01.T01:intron 30.0%
TAGAATTGAGCGTGATATTA+TGG - Chr1:81254118-81254137 MsG0180004689.01.T01:intron 30.0%
TATGTATCATAATGTTCCGT+TGG + Chr1:81253768-81253787 None:intergenic 30.0%
TATGTGAAACTAATCTGTGT+AGG - Chr1:81255224-81255243 MsG0180004689.01.T01:five_prime_UTR 30.0%
TATTACTCGTTCATATACTC+AGG - Chr1:81254360-81254379 MsG0180004689.01.T01:CDS 30.0%
TCACGTGAGTATATTCAATA+AGG - Chr1:81253419-81253438 MsG0180004689.01.T01:intron 30.0%
TCACTTATTGTACTGCAATA+TGG - Chr1:81253388-81253407 MsG0180004689.01.T01:intron 30.0%
TCATTACTTCATCGATAACT+TGG + Chr1:81253564-81253583 None:intergenic 30.0%
TGAGTATATTCAATAAGGAC+TGG - Chr1:81253424-81253443 MsG0180004689.01.T01:intron 30.0%
TGGTAAATTGCAGAAGAAAT+TGG - Chr1:81252381-81252400 MsG0180004689.01.T01:CDS 30.0%
TGTGGTAATTCAGAAAAATG+TGG + Chr1:81253057-81253076 None:intergenic 30.0%
TTATTGTACTGCAATATGGA+AGG - Chr1:81253392-81253411 MsG0180004689.01.T01:intron 30.0%
TTCAGTTGATCCTTTGTTAA+AGG - Chr1:81251988-81252007 MsG0180004689.01.T01:intron 30.0%
TTGTGAACTGCGAAAATTAT+TGG - Chr1:81254172-81254191 MsG0180004689.01.T01:intron 30.0%
TTTAATGTAGGGAGGAAATT+GGG - Chr1:81253110-81253129 MsG0180004689.01.T01:intron 30.0%
! AAAGTAGGCCAAATTTTCAT+TGG - Chr1:81251548-81251567 MsG0180004689.01.T01:intron 30.0%
! AGTGATTTTCCAACTTAGAA+TGG + Chr1:81253142-81253161 None:intergenic 30.0%
! ATAAGAGAGTTTTCCAACAA+TGG + Chr1:81252984-81253003 None:intergenic 30.0%
! ATTCTTGGTAACTAAAGTCT+TGG - Chr1:81253810-81253829 MsG0180004689.01.T01:intron 30.0%
! TAGGTGCGCTTATATATTTT+AGG - Chr1:81255243-81255262 MsG0180004689.01.T01:five_prime_UTR 30.0%
! TCGATGAAGTAATGAACTTT+TGG - Chr1:81253569-81253588 MsG0180004689.01.T01:intron 30.0%
! TGATTTCACTAAGTTGACTA+AGG + Chr1:81254816-81254835 None:intergenic 30.0%
! TTTTAATGTAGGGAGGAAAT+TGG - Chr1:81253109-81253128 MsG0180004689.01.T01:intron 30.0%
!! AACAAACTTGAGAAGGTATT+AGG + Chr1:81255080-81255099 None:intergenic 30.0%
!! ATCTAATGCAGTTTTGGTAA+TGG + Chr1:81253725-81253744 None:intergenic 30.0%
!! GAACTTAAATGGATTAGCTA+TGG + Chr1:81254408-81254427 None:intergenic 30.0%
!! GGCTTTCTTTTCTTTATTTG+AGG - Chr1:81254382-81254401 MsG0180004689.01.T01:CDS 30.0%
!! TACCTTCTCAAGTTTGTTTT+AGG - Chr1:81255082-81255101 MsG0180004689.01.T01:intron 30.0%
!! TTCATTTTAGCATATCCCAT+TGG - Chr1:81252733-81252752 MsG0180004689.01.T01:intron 30.0%
!! TTGATTTGGTAATAAGCTTG+TGG + Chr1:81253075-81253094 None:intergenic 30.0%
!!! CTGTTATAGATCTGCTTTTT+GGG - Chr1:81254631-81254650 MsG0180004689.01.T01:intron 30.0%
!!! GAGTAAAGAGAAGTTTTAGA+AGG - Chr1:81255104-81255123 MsG0180004689.01.T01:intron 30.0%
AAACACAGTTGGAGAAACAA+CGG - Chr1:81254442-81254461 MsG0180004689.01.T01:CDS 35.0%
AACTACCATATTCACATGCA+GGG - Chr1:81251797-81251816 MsG0180004689.01.T01:intron 35.0%
AATGACAGATAGACACATGA+AGG - Chr1:81251453-81251472 MsG0180004689.01.T01:CDS 35.0%
AATTGAGCGTGATATTATGG+AGG - Chr1:81254121-81254140 MsG0180004689.01.T01:intron 35.0%
ACAAGAATCCTTGTGAACAA+AGG + Chr1:81255046-81255065 None:intergenic 35.0%
ACATACAAAAGAGGCAAAAG+AGG - Chr1:81251898-81251917 MsG0180004689.01.T01:CDS 35.0%
ACTGCGAAAATTATTGGATG+AGG - Chr1:81254178-81254197 MsG0180004689.01.T01:intron 35.0%
AGAAAAAAATGAGCAGCTTC+AGG - Chr1:81252405-81252424 MsG0180004689.01.T01:CDS 35.0%
AGAAGGTTGAGTAGATACTT+TGG - Chr1:81252765-81252784 MsG0180004689.01.T01:intron 35.0%
AGAGAAGATGAATAAGCTAC+TGG - Chr1:81254217-81254236 MsG0180004689.01.T01:intron 35.0%
AGGAAAGCAACAAACAGTTT+CGG - Chr1:81254915-81254934 MsG0180004689.01.T01:intron 35.0%
ATGACAGATAGACACATGAA+GGG - Chr1:81251454-81251473 MsG0180004689.01.T01:CDS 35.0%
ATTTATAGGACTTTGATCCC+TGG - Chr1:81251850-81251869 MsG0180004689.01.T01:intron 35.0%
CAACATTGTAAGCACATTCT+TGG - Chr1:81253795-81253814 MsG0180004689.01.T01:intron 35.0%
CTATGCCATGGAAAAAAAGT+AGG - Chr1:81251533-81251552 MsG0180004689.01.T01:CDS 35.0%
CTCCTAAAACAAACTTGAGA+AGG + Chr1:81255087-81255106 None:intergenic 35.0%
GAAGTAGCATAGTTACTTAC+CGG + Chr1:81251259-81251278 None:intergenic 35.0%
GAATCGTGCAAAACAAAAAG+TGG + Chr1:81252558-81252577 None:intergenic 35.0%
GAATTCTTATCGACCATTGT+TGG - Chr1:81252968-81252987 MsG0180004689.01.T01:intron 35.0%
GACTAAGGAATTAGAATCAC+AGG - Chr1:81254310-81254329 MsG0180004689.01.T01:CDS 35.0%
GAGCTTAAAGATCAATTAGC+AGG - Chr1:81254895-81254914 MsG0180004689.01.T01:intron 35.0%
GGAAAACTCTCTTATTCTTG+TGG - Chr1:81252989-81253008 MsG0180004689.01.T01:intron 35.0%
GGGATATGCTAAAATGAAAG+AGG + Chr1:81252731-81252750 None:intergenic 35.0%
GTTTGTGGTTACAGTGAATT+GGG - Chr1:81254608-81254627 MsG0180004689.01.T01:intron 35.0%
TGCGAAAAAATAGTGAAACG+AGG + Chr1:81251281-81251300 None:intergenic 35.0%
TGTTTATCGCATCATTAAGC+TGG - Chr1:81255274-81255293 MsG0180004689.01.T01:five_prime_UTR 35.0%
TGTTTGTCGGAAATTGACAT+GGG + Chr1:81251965-81251984 None:intergenic 35.0%
TGTTTGTGGTTACAGTGAAT+TGG - Chr1:81254607-81254626 MsG0180004689.01.T01:intron 35.0%
TTAACATCATGTCTGCTCAT+TGG - Chr1:81254279-81254298 MsG0180004689.01.T01:intron 35.0%
TTGTTTGTCGGAAATTGACA+TGG + Chr1:81251966-81251985 None:intergenic 35.0%
! ACTAGTTCTCTATTGACCAA+CGG - Chr1:81253749-81253768 MsG0180004689.01.T01:intron 35.0%
! ATCAACTGAAGCTTGTTTGT+CGG + Chr1:81251978-81251997 None:intergenic 35.0%
! CATCACAATTTTGAATCCAG+AGG + Chr1:81254974-81254993 None:intergenic 35.0%
! GAATAAGCTACTGGTTGTTA+AGG - Chr1:81254226-81254245 MsG0180004689.01.T01:intron 35.0%
! GATGGATTTCAAAACACAGT+TGG - Chr1:81254431-81254450 MsG0180004689.01.T01:CDS 35.0%
! GCAGCTTGATAATTTACAGA+AGG - Chr1:81254046-81254065 MsG0180004689.01.T01:CDS 35.0%
! GTCAGAATCTAATGCAGTTT+TGG + Chr1:81253731-81253750 None:intergenic 35.0%
!! ATGAAAAGGGTACTAAACAG+TGG + Chr1:81251673-81251692 None:intergenic 35.0%
!! GCTGTTATAGATCTGCTTTT+TGG - Chr1:81254630-81254649 MsG0180004689.01.T01:intron 35.0%
!! GTTTGCTTTTCTAGCAGAAA+TGG - Chr1:81252596-81252615 MsG0180004689.01.T01:intron 35.0%
!! TCTTGGTGGTATTTTCAAAG+CGG - Chr1:81255010-81255029 MsG0180004689.01.T01:intron 35.0%
!! TTTTCATTGATGGGCATGAT+TGG - Chr1:81254744-81254763 MsG0180004689.01.T01:intron 35.0%
!!! ACACTAGATGCCCATTTTTT+AGG - Chr1:81252684-81252703 MsG0180004689.01.T01:intron 35.0%
!!! CTTTTTGAAGTTCGAAGCAT+TGG + Chr1:81253965-81253984 None:intergenic 35.0%
!!! GCACTCATTTTGTGTCATTT+AGG - Chr1:81254573-81254592 MsG0180004689.01.T01:intron 35.0%
!!! TTCTACTTTTGGAGTCTTTG+TGG - Chr1:81252255-81252274 MsG0180004689.01.T01:CDS 35.0%
!!! TTTGGCCTACTTTTTTTCCA+TGG + Chr1:81251541-81251560 None:intergenic 35.0%
AAAATCAGATCCTATGGACC+AGG + Chr1:81251871-81251890 None:intergenic 40.0%
AAATACCACCAAGACTAGCA+TGG + Chr1:81255004-81255023 None:intergenic 40.0%
AAATCAGATCCTATGGACCA+GGG + Chr1:81251870-81251889 None:intergenic 40.0%
AAGAATTCTGGCAGCATCTA+TGG + Chr1:81253342-81253361 None:intergenic 40.0%
ACAGAAGGATCTTAAGGCAA+GGG - Chr1:81254061-81254080 MsG0180004689.01.T01:CDS 40.0%
AGAGAACTGATCTGAAGAAG+AGG + Chr1:81251187-81251206 None:intergenic 40.0%
CAACTACCATATTCACATGC+AGG - Chr1:81251796-81251815 MsG0180004689.01.T01:intron 40.0%
GACTAAGGATGTTCAGATGA+TGG + Chr1:81254801-81254820 None:intergenic 40.0%
GACTTTCTTTGGCCAAGTAA+AGG + Chr1:81252843-81252862 None:intergenic 40.0%
GAGTGTGATGTGATGAGTTT+AGG + Chr1:81251114-81251133 None:intergenic 40.0%
GATAAGATCCTCTCCATTAC+TGG + Chr1:81253465-81253484 None:intergenic 40.0%
GATTCAGCACATAAAGGAGT+TGG - Chr1:81253863-81253882 MsG0180004689.01.T01:intron 40.0%
TAATAACACGGGCAAAGATC+AGG + Chr1:81254345-81254364 None:intergenic 40.0%
TACAGAAGGATCTTAAGGCA+AGG - Chr1:81254060-81254079 MsG0180004689.01.T01:CDS 40.0%
TCATTCCCTGCATGTGAATA+TGG + Chr1:81251805-81251824 None:intergenic 40.0%
TCATTGGAAGCTCAAGACTA+AGG - Chr1:81254295-81254314 MsG0180004689.01.T01:CDS 40.0%
TGCAAATATGGGCACAACAT+AGG + Chr1:81253303-81253322 None:intergenic 40.0%
TTCAAACTCTTCTGCTGAGA+AGG - Chr1:81252429-81252448 MsG0180004689.01.T01:CDS 40.0%
! TAGTTCTCTAAGAGAGCATG+AGG - Chr1:81254001-81254020 MsG0180004689.01.T01:CDS 40.0%
! TTTGGAGTCTTTGTGGTTGT+GGG - Chr1:81252262-81252281 MsG0180004689.01.T01:CDS 40.0%
!! GAAGAAGAGAGTGTTGAAGT+TGG - Chr1:81254482-81254501 MsG0180004689.01.T01:five_prime_UTR 40.0%
!! GTATGTGTTTTCGAGCAGAT+GGG - Chr1:81254847-81254866 MsG0180004689.01.T01:intron 40.0%
!! TAGCATATCCCATTGGTCTT+TGG - Chr1:81252740-81252759 MsG0180004689.01.T01:intron 40.0%
!! TGTATGTGTTTTCGAGCAGA+TGG - Chr1:81254846-81254865 MsG0180004689.01.T01:intron 40.0%
!! TTTTCTAGCCAGTAATGGAG+AGG - Chr1:81253454-81253473 MsG0180004689.01.T01:intron 40.0%
!!! TTTTGGAGTCTTTGTGGTTG+TGG - Chr1:81252261-81252280 MsG0180004689.01.T01:CDS 40.0%
AAACTACCAACGCTCTAGCA+CGG + Chr1:81253255-81253274 None:intergenic 45.0%
ACCTTCTCACCAAAGACCAA+TGG + Chr1:81252752-81252771 None:intergenic 45.0%
AGGTGAGATGGACCTTTACT+TGG - Chr1:81252828-81252847 MsG0180004689.01.T01:intron 45.0%
ATGCAGTATGTAGCAGCATC+AGG - Chr1:81255176-81255195 MsG0180004689.01.T01:five_prime_UTR 45.0%
ATGGAGGCTCTTGCAAAATC+CGG - Chr1:81254137-81254156 MsG0180004689.01.T01:intron 45.0%
CCTTCTCACCAAAGACCAAT+GGG + Chr1:81252751-81252770 None:intergenic 45.0%
CTTGTGGTCCCTTTCTAACT+AGG - Chr1:81253005-81253024 MsG0180004689.01.T01:intron 45.0%
GAAGTTGGAATTCTGTCTGC+AGG - Chr1:81254497-81254516 MsG0180004689.01.T01:five_prime_UTR 45.0%
GAGGAACGCGTAATTAGACT+AGG - Chr1:81254020-81254039 MsG0180004689.01.T01:CDS 45.0%
GCTCGTAATAGCTAGAGCAA+CGG - Chr1:81253902-81253921 MsG0180004689.01.T01:intron 45.0%
GGGTAGCATGGTGCAAATAT+GGG + Chr1:81253314-81253333 None:intergenic 45.0%
TCAGACGCGCAAACTTCAAA+GGG - Chr1:81254530-81254549 MsG0180004689.01.T01:five_prime_UTR 45.0%
TCCAGTTCAAACGCAGAAAC+CGG - Chr1:81251237-81251256 MsG0180004689.01.T01:three_prime_UTR 45.0%
TCGGAGAAACGTTGTGTCTT+TGG - Chr1:81252036-81252055 MsG0180004689.01.T01:intron 45.0%
TCTATGGCAATTGGGTAGCA+TGG + Chr1:81253326-81253345 None:intergenic 45.0%
TGGCAGCATCTATGGCAATT+GGG + Chr1:81253334-81253353 None:intergenic 45.0%
TGGGTAGCATGGTGCAAATA+TGG + Chr1:81253315-81253334 None:intergenic 45.0%
TGTAGGGAGGAAATTGGGAT+TGG - Chr1:81253115-81253134 MsG0180004689.01.T01:intron 45.0%
TTCACAATCCTTGTTCTCCC+CGG + Chr1:81254159-81254178 None:intergenic 45.0%
TTGGAGTCTTTGTGGTTGTG+GGG - Chr1:81252263-81252282 MsG0180004689.01.T01:CDS 45.0%
! AACGTTGTGTCTTTGGCTTC+TGG - Chr1:81252043-81252062 MsG0180004689.01.T01:intron 45.0%
! ACGTTGTGTCTTTGGCTTCT+GGG - Chr1:81252044-81252063 MsG0180004689.01.T01:intron 45.0%
! GTCTATGTCCATGCTAGTCT+TGG - Chr1:81254993-81255012 MsG0180004689.01.T01:intron 45.0%
!! GGGATTGGTCCATTCTAAGT+TGG - Chr1:81253130-81253149 MsG0180004689.01.T01:intron 45.0%
!! TATGTCCATGCTAGTCTTGG+TGG - Chr1:81254996-81255015 MsG0180004689.01.T01:intron 45.0%
!! TAAATTACAATAAAAAAAAA+TGG + Chr1:81251419-81251438 None:intergenic 5.0%
!! TTATTATTATAAAAGAAAAA+AGG + Chr1:81252798-81252817 None:intergenic 5.0%
!!! ATTAAAATTAATTTTAATGT+AGG - Chr1:81253098-81253117 MsG0180004689.01.T01:intron 5.0%
!!! TTAAAATTAATTTTAATGTA+GGG - Chr1:81253099-81253118 MsG0180004689.01.T01:intron 5.0%
!!! TTAATTTTAATTTTTTGATT+TGG + Chr1:81253089-81253108 None:intergenic 5.0%
AACTACCAACGCTCTAGCAC+GGG + Chr1:81253254-81253273 None:intergenic 50.0%
CTCAGACGCGCAAACTTCAA+AGG - Chr1:81254529-81254548 MsG0180004689.01.T01:five_prime_UTR 50.0%
CTGGCAGCATCTATGGCAAT+TGG + Chr1:81253335-81253354 None:intergenic 50.0%
GAAGGAGCTTCGAAGTCGTT+TGG - Chr1:81252069-81252088 MsG0180004689.01.T01:intron 50.0%
GACTTTGATCCCTGGTCCAT+AGG - Chr1:81251858-81251877 MsG0180004689.01.T01:intron 50.0%
GCTTGATGCACTCTATGCCA+TGG - Chr1:81251521-81251540 MsG0180004689.01.T01:CDS 50.0%
TCTTTGTGGTTGTGGGGTCA+AGG - Chr1:81252269-81252288 MsG0180004689.01.T01:CDS 50.0%
TGCAAAATCCGGGGAGAACA+AGG - Chr1:81254148-81254167 MsG0180004689.01.T01:intron 50.0%
TGGAGGCTCTTGCAAAATCC+GGG - Chr1:81254138-81254157 MsG0180004689.01.T01:intron 50.0%
! ACCGGTTTCTGCGTTTGAAC+TGG + Chr1:81251241-81251260 None:intergenic 50.0%
! GTCTTTGGCTTCTGGGTTGA+AGG - Chr1:81252051-81252070 MsG0180004689.01.T01:intron 50.0%
!! CAGAATTTCTGGGACACCTC+TGG - Chr1:81254955-81254974 MsG0180004689.01.T01:intron 50.0%
!! CCCATTGGTCTTTGGTGAGA+AGG - Chr1:81252748-81252767 MsG0180004689.01.T01:intron 50.0%
GGAGGCTCTTGCAAAATCCG+GGG - Chr1:81254139-81254158 MsG0180004689.01.T01:intron 55.0%
! GAAACAACGGCGTGCTGATC+AGG - Chr1:81254455-81254474 MsG0180004689.01.T01:exon 55.0%
! TCGAAGTCGTTTGGCTTCGC+AGG - Chr1:81252078-81252097 MsG0180004689.01.T01:intron 55.0%
!! CTGCGCTGATTGAGCTGATG+CGG + Chr1:81253940-81253959 None:intergenic 55.0%
ACCAACGCTCTAGCACGGGA+AGG + Chr1:81253250-81253269 None:intergenic 60.0%
CCAACGCTCTAGCACGGGAA+GGG + Chr1:81253249-81253268 None:intergenic 60.0%
TCGAGCAGATGGGAGAGCGA+CGG - Chr1:81254857-81254876 MsG0180004689.01.T01:intron 60.0%
CCCTTCCCGTGCTAGAGCGT+TGG - Chr1:81253246-81253265 MsG0180004689.01.T01:intron 65.0%
CGAGCAGATGGGAGAGCGAC+GGG - Chr1:81254858-81254877 MsG0180004689.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 81251108 81255322 81251108 ID=MsG0180004689.01;Name=MsG0180004689.01
Chr1 mRNA 81251108 81255322 81251108 ID=MsG0180004689.01.T01;Parent=MsG0180004689.01;Name=MsG0180004689.01.T01;_AED=0.11;_eAED=0.11;_QI=258|0.8|0.83|1|0.8|0.66|6|287|337
Chr1 exon 81251108 81251565 81251108 ID=MsG0180004689.01.T01:exon:34408;Parent=MsG0180004689.01.T01
Chr1 exon 81251879 81251980 81251879 ID=MsG0180004689.01.T01:exon:34407;Parent=MsG0180004689.01.T01
Chr1 exon 81252099 81252560 81252099 ID=MsG0180004689.01.T01:exon:34406;Parent=MsG0180004689.01.T01
Chr1 exon 81253980 81254087 81253980 ID=MsG0180004689.01.T01:exon:34405;Parent=MsG0180004689.01.T01
Chr1 exon 81254295 81254572 81254295 ID=MsG0180004689.01.T01:exon:34404;Parent=MsG0180004689.01.T01
Chr1 exon 81255172 81255322 81255172 ID=MsG0180004689.01.T01:exon:34403;Parent=MsG0180004689.01.T01
Chr1 five_prime_UTR 81255172 81255322 81255172 ID=MsG0180004689.01.T01:five_prime_utr;Parent=MsG0180004689.01.T01
Chr1 five_prime_UTR 81254466 81254572 81254466 ID=MsG0180004689.01.T01:five_prime_utr;Parent=MsG0180004689.01.T01
Chr1 CDS 81254295 81254465 81254295 ID=MsG0180004689.01.T01:cds;Parent=MsG0180004689.01.T01
Chr1 CDS 81253980 81254087 81253980 ID=MsG0180004689.01.T01:cds;Parent=MsG0180004689.01.T01
Chr1 CDS 81252099 81252560 81252099 ID=MsG0180004689.01.T01:cds;Parent=MsG0180004689.01.T01
Chr1 CDS 81251879 81251980 81251879 ID=MsG0180004689.01.T01:cds;Parent=MsG0180004689.01.T01
Chr1 CDS 81251395 81251565 81251395 ID=MsG0180004689.01.T01:cds;Parent=MsG0180004689.01.T01
Chr1 three_prime_UTR 81251108 81251394 81251108 ID=MsG0180004689.01.T01:three_prime_utr;Parent=MsG0180004689.01.T01
Gene Sequence

>MsG0180004689.01.T01

ATGTCAATTTCCGACAAACAAGCTTCAGTTGATCCTTTGTTAAAGGATTTGAATGATAAAAAACAAAGCTTTCGGAGAAACGTTGTGTCTTTGGCTTCTGGGTTGAAGGAGCTTCGAAGTCGTTTGGCTTCGCAGGAACAATCCTATGTTAAAGAAACTCTAACTAGACAGGAAGCAGAGACAAATGCAAAGATTATGGAAATGGAAATTGGTAAATTGCAGAAGAAATTGGAAGAAAAAAATGAGCAGCTTCAGGTTTCAAACTCTTCTGCTGAGAAGCACATAAAGGAGTTGGACGATCTTAGAACACAGCTCGTAATAGCTAGAGCAACGGCAGATTCAAGTGCCGCATCAGCTCAATCAGCGCAGCTCCAATGCTTCGAACTTCAAAAAGAATTGGATGAGAAAAATAGTTCTCTAAGAGAGCATGAGGAACGCGTAATTAGACTAGGCGAGCAGCTTGATAATTTACAGAAGGATCTTAAGGCAAGGGAATCTTCGCAAAAGCAATTGAGAGATGAAGTATTTAGAATTGAGCGTGATATTATGGAGGCTCTTGCAAAATCCGGGGAGAACAAGGATTGTGAACTGCGAAAATTATTGGATGAGGTTTCTCCTAAGAATATAGAGAAGATGAATAAGCTACTGGTTGTTAAGGATGATGAAATAGTTAGACTTAAGGATGAAATTAACATCATGTCTGCTCATTGGAAGCTCAAGACTAAGGAATTAGAATCACAGTTGGAGAAACAACGGCGTGCTGATCAGGATCTGAAGAAGAGAGTGTTGAAGTTGGAATTCTGTCTGCAGGAAGCTCGTTCTCAGACGCGCAAACTTCAAAGGATGGGAGAGCGACGGGACAAAGCTATTAAAGAGCTTAAAGATCAATTAGCAGGAAAGCAACAAACAGTTTCGGATGCCGAAAAGCAAAATCAGAATTTCTGGGACACCTCTGGATTCAAAATTGTGATGTCTATGTCCATGCTAGTCTTGGTGGTATTTTCAAAGCGGTGA

Protein sequence

>MsG0180004689.01.T01

MSISDKQASVDPLLKDLNDKKQSFRRNVVSLASGLKELRSRLASQEQSYVKETLTRQEAETNAKIMEMEIGKLQKKLEEKNEQLQVSNSSAEKHIKELDDLRTQLVIARATADSSAASAQSAQLQCFELQKELDEKNSSLREHEERVIRLGEQLDNLQKDLKARESSQKQLRDEVFRIERDIMEALAKSGENKDCELRKLLDEVSPKNIEKMNKLLVVKDDEIVRLKDEINIMSAHWKLKTKELESQLEKQRRADQDLKKRVLKLEFCLQEARSQTRKLQRMGERRDKAIKELKDQLAGKQQTVSDAEKQNQNFWDTSGFKIVMSMSMLVLVVFSKR*