AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0001890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 160 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACGAGTTACTATTGTTTA+TGG 0.127348 1_1:+3607521 Msa0001890:three_prime_UTR
AATTTAACAGTTGCTTATTC+TGG 0.149039 1_1:+3606652 Msa0001890:three_prime_UTR
AAACATCAGGAAGTTGTTTA+AGG 0.196812 1_1:+3605273 Msa0001890:three_prime_UTR
ACTTTACATGGGAGGATTAA+AGG 0.234605 1_1:+3607997 Msa0001890:three_prime_UTR
TGCAATATGGGAAGAGAAAA+AGG 0.243934 1_1:+3607730 Msa0001890:three_prime_UTR
TAAACAACTTCCTGATGTTT+TGG 0.257525 1_1:-3605270 None:intergenic
ATGTAGTTAGATAAGTTTCT+AGG 0.272462 1_1:+3607856 Msa0001890:three_prime_UTR
GCAAAATCAGGCTCTATTAT+TGG 0.282676 1_1:+3607247 Msa0001890:three_prime_UTR
CATTTGGCATGGATCAGATA+TGG 0.299955 1_1:+3604095 Msa0001890:three_prime_UTR
GCTAACTACGAGGATTATTC+AGG 0.301139 1_1:+3607561 Msa0001890:three_prime_UTR
TGTGATTTCAGTCCTTTATC+TGG 0.308734 1_1:+3606693 Msa0001890:three_prime_UTR
GTTTCAGAACTTACCTCTTA+AGG 0.317681 1_1:-3607282 None:intergenic
ACCTGATTGTTTAGAGTTGA+AGG 0.318328 1_1:+3607891 Msa0001890:three_prime_UTR
AGAGAGAGCATTGTGCAATA+TGG 0.318597 1_1:+3607717 Msa0001890:three_prime_UTR
TTAAGGATGGCTTCATTATC+AGG 0.321072 1_1:+3605290 Msa0001890:three_prime_UTR
CAGTATTTGTCGGTAGAATC+AGG 0.352675 1_1:-3608553 None:intergenic
GAACGATTATATACCTTTGT+AGG 0.358428 1_1:-3607116 None:intergenic
AACTCTAGCAGGCTCTTTCC+AGG 0.361101 1_1:-3608159 None:intergenic
TTTCAGAACTTACCTCTTAA+GGG 0.361709 1_1:-3607281 None:intergenic
ATTGCACTTGCAGTTCATAT+TGG 0.363079 1_1:+3607210 Msa0001890:intron
CAAAAGTCCTACAGATCATT+AGG 0.366008 1_1:+3604336 Msa0001890:three_prime_UTR
ATTTAACAGTTGCTTATTCT+GGG 0.375684 1_1:+3606653 Msa0001890:three_prime_UTR
ATCGAGCTGCGATTAAATTC+AGG 0.379752 1_1:+3604603 Msa0001890:three_prime_UTR
AGTAAACACCTTCCAGATAA+AGG 0.389171 1_1:-3606705 None:intergenic
CTGACTAAGATGAACATGTT+TGG 0.399933 1_1:+3608710 Msa0001890:three_prime_UTR
TTGAATTTGAAAATACCATT+TGG 0.400895 1_1:+3604079 Msa0001890:three_prime_UTR
AAATGCATTATGCAGGTATA+CGG 0.405222 1_1:+3606105 Msa0001890:intron
GCATTGATTCTTCCCTTAAG+AGG 0.406835 1_1:+3607269 Msa0001890:three_prime_UTR
GACGTTGTATTTGACTTCAT+TGG 0.414112 1_1:+3606151 Msa0001890:three_prime_UTR
TTAGATGGACAATGAATTTG+AGG 0.417084 1_1:+3606583 Msa0001890:intron
TTCTTCCTTCTTCTTCAGTC+CGG 0.420638 1_1:+3603730 None:intergenic
ATTTGAGGAGAAGCAAATAA+AGG 0.421213 1_1:+3607825 Msa0001890:three_prime_UTR
TTGGTGAGTATTGTGAAATA+AGG 0.427114 1_1:-3609619 None:intergenic
CAGATCATTAGGATCATCTC+AGG 0.432627 1_1:+3604347 Msa0001890:three_prime_UTR
GATAGACTTGCAGTATTTGT+CGG 0.435566 1_1:-3608563 None:intergenic
AGCAATAATGCCAACAGGAT+TGG 0.436526 1_1:+3609489 Msa0001890:three_prime_UTR
TTATGATGATGATCTTAAAC+AGG 0.440099 1_1:+3604661 Msa0001890:three_prime_UTR
GAGAGAGCATTGTGCAATAT+GGG 0.440525 1_1:+3607718 Msa0001890:three_prime_UTR
TTTAATCGCAGCTCGATCAT+AGG 0.441826 1_1:-3604597 None:intergenic
AACCAACTGTTGCAGATATT+AGG 0.442398 1_1:-3609327 None:intergenic
GATAGGGAGTGAATCTTAGT+TGG 0.449443 1_1:-3605316 None:intergenic
AAGAAGAAAACGGTGGAGAT+TGG 0.453039 1_1:-3603848 None:intergenic
CTAGCAGCCGCTAAAGTAGC+TGG 0.453585 1_1:+3605852 Msa0001890:three_prime_UTR
AAGGGACGTCATTCTAGATA+TGG 0.453943 1_1:+3605370 Msa0001890:three_prime_UTR
TGGCAGCAAAGTGCAAAATC+AGG 0.459814 1_1:+3607235 Msa0001890:three_prime_UTR
CTCCTTCATGCGCCTAGCAC+AGG 0.460882 1_1:-3605338 None:intergenic
TTTACTATGAGAGAGAGAAA+TGG 0.461147 1_1:+3606722 Msa0001890:three_prime_UTR
TCTTGATACATCCAACCAAC+TGG 0.462684 1_1:-3607697 None:intergenic
TGTTCAAAGGTATTTAGAAA+AGG 0.464068 1_1:+3609562 Msa0001890:three_prime_UTR
GTCTATCACAAAATCAAAGA+AGG 0.465270 1_1:+3608579 Msa0001890:three_prime_UTR
TCTTTGTAGGCCAAAACATC+AGG 0.468870 1_1:+3605260 Msa0001890:intron
GCCTTCAACTCTAAACAATC+AGG 0.470343 1_1:-3607892 None:intergenic
GTGGTCGAGGACAGCGCTAT+AGG 0.473850 1_1:+3605828 Msa0001890:three_prime_UTR
TTCGTATAAATATAGAGCAT+TGG 0.477418 1_1:+3607798 Msa0001890:three_prime_UTR
GTTTCAGCAATAATGCCAAC+AGG 0.481394 1_1:+3609484 Msa0001890:three_prime_UTR
TAAGGTTAGTTAAACAATAG+AGG 0.481505 1_1:-3609601 None:intergenic
TGAACTAATGTTATGTTCAA+AGG 0.485312 1_1:+3609549 Msa0001890:three_prime_UTR
TGGCAGTTGGGAAGCTCGAA+TGG 0.485503 1_1:+3604869 Msa0001890:three_prime_UTR
ATTTCAGTCCTTTATCTGGA+AGG 0.490219 1_1:+3606697 Msa0001890:three_prime_UTR
TTTGAAAATACCATTTGGCA+TGG 0.493311 1_1:+3604084 Msa0001890:three_prime_UTR
CATGAAGGAGGCCAAGAGGA+AGG 0.493620 1_1:+3605351 Msa0001890:three_prime_UTR
ATCAGGAAGTTGTTTAAGGA+TGG 0.495341 1_1:+3605277 Msa0001890:three_prime_UTR
AGTCAATGGAAAGGAGTCAT+TGG 0.496054 1_1:-3609638 None:intergenic
GCTAACTACATAACTTTACA+TGG 0.496572 1_1:+3607985 Msa0001890:three_prime_UTR
GCGATTAAATTCAGGGGAGT+TGG 0.497882 1_1:+3604611 Msa0001890:three_prime_UTR
TATATTTATACGAAAATGAA+AGG 0.501735 1_1:-3607789 None:intergenic
AGTTACTATTGTTTATGGAA+TGG 0.503180 1_1:+3607526 Msa0001890:three_prime_UTR
CTTCATCCCAGCTACTTTAG+CGG 0.503426 1_1:-3605859 None:intergenic
GCCAGATCAAACCTCTCCTC+AGG 0.506138 1_1:-3606181 None:intergenic
CAGATGCTAGAGAATGAGCC+TGG 0.507226 1_1:+3608141 Msa0001890:intron
TCAAAACAAAGTATAGTCAA+TGG 0.507968 1_1:-3609652 None:intergenic
CACTGCACAAATGTGGCAGT+TGG 0.508097 1_1:+3604856 Msa0001890:three_prime_UTR
GCTCGAATGGGTCAATTCCT+TGG 0.510521 1_1:+3604882 Msa0001890:three_prime_UTR
ACTGCACAAATGTGGCAGTT+GGG 0.511914 1_1:+3604857 Msa0001890:three_prime_UTR
TTTAAATTGTGGCCGCGCCA+TGG 0.512803 1_1:+3605051 Msa0001890:three_prime_UTR
CCGTGTGAGGAGAAGAGAAC+CGG 0.514670 1_1:-3603749 None:intergenic
AACGATTATATACCTTTGTA+GGG 0.515993 1_1:-3607115 None:intergenic
GGCGAGGTCGACGGAGGAGA+CGG 0.516043 1_1:-3603815 None:intergenic
ATTTGGCATGGATCAGATAT+GGG 0.516241 1_1:+3604096 Msa0001890:three_prime_UTR
CATATCTGATCCATGCCAAA+TGG 0.516686 1_1:-3604094 None:intergenic
ACAAGCAACTTCTGATATGA+TGG 0.520935 1_1:+3606610 Msa0001890:three_prime_UTR
TTACAGATGTGTCGTGGTCG+AGG 0.524433 1_1:+3605815 Msa0001890:intron
AGTTATGTAGTTAGCCTCCA+TGG 0.526706 1_1:-3607977 None:intergenic
CATGCGCCTAGCACAGGATA+GGG 0.528401 1_1:-3605332 None:intergenic
GTGTTCAACGGCGAGGTCGA+CGG 0.530961 1_1:-3603824 None:intergenic
AGAATGACGTCCCTTCCTCT+TGG 0.531849 1_1:-3605362 None:intergenic
GCACATGGCGTTCGAGAGCA+TGG 0.532295 1_1:+3608753 Msa0001890:three_prime_UTR
CGGAGGAGACGGCAAGGTGG+CGG 0.535976 1_1:-3603804 None:intergenic
TCATGCGCCTAGCACAGGAT+AGG 0.536282 1_1:-3605333 None:intergenic
ATTGTTTAGAGTTGAAGGCT+TGG 0.537047 1_1:+3607896 Msa0001890:three_prime_UTR
CTATTGTTTATGGAATGGCT+AGG 0.538463 1_1:+3607531 Msa0001890:three_prime_UTR
TCGAGCTGCGATTAAATTCA+GGG 0.538997 1_1:+3604604 Msa0001890:three_prime_UTR
GACGGCAAGGTGGCGGTGTG+AGG 0.539935 1_1:-3603797 None:intergenic
TCGAGTATAAACCAGTTGGT+TGG 0.543459 1_1:+3607686 Msa0001890:three_prime_UTR
TCCTGCTTTCAGCTATGAGA+GGG 0.547312 1_1:+3607490 Msa0001890:intron
TTCCTGCTTTCAGCTATGAG+AGG 0.550089 1_1:+3607489 Msa0001890:intron
GTCTGTCGCTACTACTCTTG+AGG 0.550215 1_1:+3608184 Msa0001890:three_prime_UTR
TTGGTGATCCTCCTGAGGAG+AGG 0.552332 1_1:+3606170 Msa0001890:three_prime_UTR
ACACAGCTCATGTTGCTGCT+AGG 0.553358 1_1:+3604491 Msa0001890:three_prime_UTR
CACACTGAGAAAGAAGAAAA+CGG 0.554412 1_1:-3603858 None:intergenic
TATTAGAGCTTTGTTAACCA+TGG 0.554431 1_1:+3607960 Msa0001890:three_prime_UTR
AGATGATCCTAATGATCTGT+AGG 0.555523 1_1:-3604343 None:intergenic
GGCCTAATATCTGCAACAGT+TGG 0.557391 1_1:+3609325 Msa0001890:three_prime_UTR
ATGAAGGAGGCCAAGAGGAA+GGG 0.559525 1_1:+3605352 Msa0001890:three_prime_UTR
TAAACAATAGAGGACATCAA+TGG 0.561945 1_1:-3609591 None:intergenic
ATATTTATACGAAAATGAAA+GGG 0.564014 1_1:-3607788 None:intergenic
AAACCACGCATGTGTATTGG+TGG 0.565338 1_1:+3609360 Msa0001890:three_prime_UTR
CCGGTTCTCTTCTCCTCACA+CGG 0.565646 1_1:+3603749 Msa0001890:CDS
CTAACTACGAGGATTATTCA+GGG 0.568404 1_1:+3607562 Msa0001890:three_prime_UTR
TGATAGAGACAAATGGAAGA+AGG 0.570053 1_1:-3603902 None:intergenic
TTATGCAGGTATACGGCAGA+TGG 0.570206 1_1:+3606112 Msa0001890:intron
ATGGACAATGAATTTGAGGA+TGG 0.570269 1_1:+3606587 Msa0001890:three_prime_UTR
GGCAGTTGGGAAGCTCGAAT+GGG 0.571868 1_1:+3604870 Msa0001890:three_prime_UTR
TGACGCAATCTACAAGATGA+TGG 0.578831 1_1:+3605106 Msa0001890:three_prime_UTR
AGTGTATAGTAACAAAGAGC+TGG 0.581359 1_1:+3605880 Msa0001890:three_prime_UTR
TTGTCTCTATCATCAATCAA+AGG 0.583253 1_1:+3603913 Msa0001890:CDS
TGATTGATGATAGAGACAAA+TGG 0.584709 1_1:-3603909 None:intergenic
CTCTGTTATATCACGGACCA+TGG 0.587310 1_1:-3605068 None:intergenic
GCGACAGACGAAACTCTAGC+AGG 0.588210 1_1:-3608170 None:intergenic
ACAAAGTATAGTCAATGGAA+AGG 0.588594 1_1:-3609647 None:intergenic
GTGGAGATTGGTGTGTTCAA+CGG 0.591351 1_1:-3603836 None:intergenic
TCTATCACAAAATCAAAGAA+GGG 0.593364 1_1:+3608580 Msa0001890:three_prime_UTR
TTCACTCCCTATCCTGTGCT+AGG 0.595814 1_1:+3605326 Msa0001890:three_prime_UTR
ATCCTGTGCTAGGCGCATGA+AGG 0.598410 1_1:+3605336 Msa0001890:three_prime_UTR
AGATCATTAGGATCATCTCA+GGG 0.599057 1_1:+3604348 Msa0001890:three_prime_UTR
TCTTATTTACAGATGTGTCG+TGG 0.600555 1_1:+3605809 Msa0001890:intron
CTGTGCTAGGCGCATGAAGG+AGG 0.602422 1_1:+3605339 Msa0001890:three_prime_UTR
TGTTGCAAAATGCCCTACAA+AGG 0.603887 1_1:+3607103 Msa0001890:three_prime_UTR
AATGGAAGGACAATAGAAAG+TGG 0.612556 1_1:+3606740 Msa0001890:three_prime_UTR
ACTTGCAGTTCATATTGGCA+TGG 0.614305 1_1:+3607215 Msa0001890:intron
AGGATCATCTCAGGGGTGGA+CGG 0.614978 1_1:+3604356 Msa0001890:three_prime_UTR
TAGCAGCCGCTAAAGTAGCT+GGG 0.615799 1_1:+3605853 Msa0001890:three_prime_UTR
TAGAGCTTTGTTAACCATGG+AGG 0.620374 1_1:+3607963 Msa0001890:three_prime_UTR
CTTCATTGGTGATCCTCCTG+AGG 0.623430 1_1:+3606165 Msa0001890:three_prime_UTR
AGATCAAACCTCTCCTCAGG+AGG 0.625024 1_1:-3606178 None:intergenic
ACTACATAACTTTACATGGG+AGG 0.625525 1_1:+3607989 Msa0001890:three_prime_UTR
CATTAGGATCATCTCAGGGG+TGG 0.630656 1_1:+3604352 Msa0001890:three_prime_UTR
AGCAATTCTCTGTTATATCA+CGG 0.631225 1_1:-3605075 None:intergenic
AATGATTGTGCCAATCCTGT+TGG 0.632692 1_1:-3609499 None:intergenic
GGTCGACGGAGGAGACGGCA+AGG 0.637294 1_1:-3603810 None:intergenic
GGAGTAACACTGCACAAATG+TGG 0.639362 1_1:+3604849 Msa0001890:three_prime_UTR
AGTGGTTCAATTGATTCACA+TGG 0.642905 1_1:+3606758 Msa0001890:three_prime_UTR
GATTGGTGTGTTCAACGGCG+AGG 0.643453 1_1:-3603831 None:intergenic
TTCAACGGCGAGGTCGACGG+AGG 0.650561 1_1:-3603821 None:intergenic
GGCGCATGAAGGAGGCCAAG+AGG 0.655314 1_1:+3605347 Msa0001890:three_prime_UTR
TGATGGCAAGCAGTCAACAA+AGG 0.657586 1_1:+3606627 Msa0001890:three_prime_UTR
ATATTCGAGTATAAACCAGT+TGG 0.658609 1_1:+3607682 Msa0001890:three_prime_UTR
AGAGGGAGTTCGAAGTACAG+AGG 0.669918 1_1:+3604828 Msa0001890:three_prime_UTR
CTAACTACATAACTTTACAT+GGG 0.671104 1_1:+3607986 Msa0001890:three_prime_UTR
CTATGAGAGAGAGAAATGGA+AGG 0.671735 1_1:+3606726 Msa0001890:three_prime_UTR
CGACGGAGGAGACGGCAAGG+TGG 0.673937 1_1:-3603807 None:intergenic
CGAGCTGCGATTAAATTCAG+GGG 0.681626 1_1:+3604605 Msa0001890:three_prime_UTR
TTATATCACGGACCATGGCG+CGG 0.686056 1_1:-3605063 None:intergenic
AAATGTTTCTGCAAGCTGTG+CGG 0.691119 1_1:-3607078 None:intergenic
TAACTACGAGGATTATTCAG+GGG 0.696814 1_1:+3607563 Msa0001890:three_prime_UTR
CAGGGGATAAGAATTATCAG+AGG 0.706903 1_1:+3607580 Msa0001890:three_prime_UTR
CATCCACCAATACACATGCG+TGG 0.710635 1_1:-3609363 None:intergenic
ACTGAGAAAGAAGAAAACGG+TGG 0.729219 1_1:-3603855 None:intergenic
GATCATTAGGATCATCTCAG+GGG 0.736352 1_1:+3604349 Msa0001890:three_prime_UTR
AGGTTGTGCAGCTAACTACG+AGG 0.761300 1_1:+3607551 Msa0001890:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATATGATTTACTATTTT+AGG + chr1_1:3604427-3604446 Msa0001890:intron 10.0%
!!! TTGTGTAATTAATTTTTTTA+TGG + chr1_1:3604543-3604562 Msa0001890:intron 10.0%
!!! ATAATCTTTTTTATTGTAAT+AGG + chr1_1:3606856-3606875 Msa0001890:intron 10.0%
!! ATATTTAATATTATTGATCA+TGG + chr1_1:3608652-3608671 Msa0001890:intron 10.0%
!!! TTTAATCGATTTAGATTTTT+TGG + chr1_1:3604019-3604038 Msa0001890:intron 15.0%
!!! TTTATTTTTCAGTTCATTTT+AGG + chr1_1:3604172-3604191 Msa0001890:intron 15.0%
!!! ACTATTTTTTTCTTTGATTT+TGG + chr1_1:3604391-3604410 Msa0001890:intron 15.0%
!! ACTTCAGTTAAATTAAAAAT+AGG - chr1_1:3604921-3604940 None:intergenic 15.0%
!! TAATTTAACTGAAGTTATTT+AGG + chr1_1:3604926-3604945 Msa0001890:intron 15.0%
!! CTTTGTTCAATTTATTTAAA+TGG + chr1_1:3605224-3605243 Msa0001890:intron 15.0%
!! TTCAATTTATTTAAATGGTT+TGG + chr1_1:3605229-3605248 Msa0001890:intron 15.0%
!!! GATTATTTTGTTTTTTTAGA+TGG + chr1_1:3606568-3606587 Msa0001890:intron 15.0%
!! TCAACTATTTAACATATAAA+TGG - chr1_1:3606907-3606926 None:intergenic 15.0%
!! TCATATATTAATTTCCAAAT+TGG + chr1_1:3607409-3607428 Msa0001890:intron 15.0%
!! ATATTTATACGAAAATGAAA+GGG - chr1_1:3607791-3607810 None:intergenic 15.0%
!! TATATTTATACGAAAATGAA+AGG - chr1_1:3607792-3607811 None:intergenic 15.0%
!! TGATATTATTTACATGAATA+AGG - chr1_1:3608886-3608905 None:intergenic 15.0%
!!! TGAAATGCATATTATTATTT+TGG + chr1_1:3609235-3609254 Msa0001890:intron 15.0%
!!! AAATGGTATTTTCAAATTCA+AGG - chr1_1:3604080-3604099 None:intergenic 20.0%
!! TTGAATTTGAAAATACCATT+TGG + chr1_1:3604079-3604098 Msa0001890:three_prime_UTR 20.0%
!! AAATAAAAACTTGGAAAGAT+AGG - chr1_1:3604159-3604178 None:intergenic 20.0%
!! TGAACTGAAAAATAAAAACT+TGG - chr1_1:3604168-3604187 None:intergenic 20.0%
!!! GTTTTGTATTTGATTTTTGT+AGG + chr1_1:3604460-3604479 Msa0001890:intron 20.0%
!!! TAGTGTAACATTTTAAATTG+TGG + chr1_1:3605040-3605059 Msa0001890:intron 20.0%
!!! AATTTATTTAAATGGTTTGG+TGG + chr1_1:3605232-3605251 Msa0001890:intron 20.0%
!! TCAATTCATTAAAACTATCA+AGG - chr1_1:3605398-3605417 None:intergenic 20.0%
!!! TGATAGTTTTAATGAATTGA+AGG + chr1_1:3605398-3605417 Msa0001890:intron 20.0%
!!! AATAAGTTGCTCTAAAATTT+TGG - chr1_1:3605632-3605651 None:intergenic 20.0%
!!! GTATATTTCTATTTACTGAA+TGG + chr1_1:3605902-3605921 Msa0001890:intron 20.0%
!!! GCAACTTTATGTTTTTTTAT+AGG + chr1_1:3605928-3605947 Msa0001890:intron 20.0%
!! GAAAAGATCAATGTTTATAT+TGG + chr1_1:3606354-3606373 Msa0001890:intron 20.0%
!!! TTAATGTTGTTGGATTATTT+TGG + chr1_1:3606504-3606523 Msa0001890:intron 20.0%
!!! TAATGTTGTTGGATTATTTT+GGG + chr1_1:3606505-3606524 Msa0001890:intron 20.0%
!! TTGTAGTTTATCTAAATTAG+AGG + chr1_1:3606801-3606820 Msa0001890:intron 20.0%
!! CAGGAAGAATTATAATAAAA+TGG - chr1_1:3606967-3606986 None:intergenic 20.0%
!!! CATTTTATTATAATTCTTCC+TGG + chr1_1:3606965-3606984 Msa0001890:intron 20.0%
!! AATTTCCAAATTGGTTAATT+TGG + chr1_1:3607418-3607437 Msa0001890:intron 20.0%
!! TATAACCAAATTAACCAATT+TGG - chr1_1:3607426-3607445 None:intergenic 20.0%
!! TAGGTCAAATTTGAAAAATT+AGG - chr1_1:3608248-3608267 None:intergenic 20.0%
!!! ATGGTCTTTTTTATATTTTC+AGG + chr1_1:3608671-3608690 Msa0001890:intron 20.0%
!!! TTTTATATATTGCCTTCATA+TGG + chr1_1:3608915-3608934 Msa0001890:intron 20.0%
!!! GATTTTGTTAAACTAAGAAT+GGG - chr1_1:3608953-3608972 None:intergenic 20.0%
!!! AGATTTTGTTAAACTAAGAA+TGG - chr1_1:3608954-3608973 None:intergenic 20.0%
!! TTAGTTTAACAAAATCTAAC+TGG + chr1_1:3608957-3608976 Msa0001890:intron 20.0%
! TTTGTTCATCTAATTGATTG+AGG + chr1_1:3603985-3604004 Msa0001890:intron 25.0%
!!! TAGATTTTTTGGTATGTCTT+TGG + chr1_1:3604030-3604049 Msa0001890:intron 25.0%
! ATATGGGTAAGTTTCAATTT+GGG + chr1_1:3604112-3604131 Msa0001890:intron 25.0%
!!! TTGTATTTGATTTTTGTAGG+TGG + chr1_1:3604463-3604482 Msa0001890:intron 25.0%
!! TTATGATGATGATCTTAAAC+AGG + chr1_1:3604661-3604680 Msa0001890:three_prime_UTR 25.0%
!! AAATCAATGTTTTCTCAAGA+GGG + chr1_1:3604811-3604830 Msa0001890:three_prime_UTR 25.0%
! ATATTGAAACATCATGTATC+TGG + chr1_1:3605011-3605030 Msa0001890:intron 25.0%
! AAAGAAAATGAATAGAAAGG+AGG - chr1_1:3605142-3605161 None:intergenic 25.0%
! AGGAAAGAAAATGAATAGAA+AGG - chr1_1:3605145-3605164 None:intergenic 25.0%
!! TTTCTATTCATTTTCTTTCC+TGG + chr1_1:3605144-3605163 Msa0001890:intron 25.0%
! TTGAACAAAGTTATTGTATC+AGG - chr1_1:3605214-3605233 None:intergenic 25.0%
! GAATTGAAGGATATAGATTA+TGG + chr1_1:3605411-3605430 Msa0001890:intron 25.0%
! AACCTATCTGATACTTTATT+TGG + chr1_1:3605698-3605717 Msa0001890:intron 25.0%
!! ATCCAAATAAAGTATCAGAT+AGG - chr1_1:3605703-3605722 None:intergenic 25.0%
!!! AATTTTGTTTTTGAACTGCA+TGG + chr1_1:3605752-3605771 Msa0001890:intron 25.0%
!!! TTTTCATCATTGGCTTAATA+GGG - chr1_1:3606339-3606358 None:intergenic 25.0%
!! AACATTGATCTTTTCATCAT+TGG - chr1_1:3606349-3606368 None:intergenic 25.0%
! TTGATGCTAATTAATGTTGT+TGG + chr1_1:3606494-3606513 Msa0001890:intron 25.0%
! AATTTAACAGTTGCTTATTC+TGG + chr1_1:3606652-3606671 Msa0001890:three_prime_UTR 25.0%
! ATTTAACAGTTGCTTATTCT+GGG + chr1_1:3606653-3606672 Msa0001890:three_prime_UTR 25.0%
!!! GTTGACTTTTGTATTTTATC+AGG + chr1_1:3607035-3607054 Msa0001890:intron 25.0%
! AACGATTATATACCTTTGTA+GGG - chr1_1:3607118-3607137 None:intergenic 25.0%
! TGGATCATTGTTTCATAATT+TGG + chr1_1:3607365-3607384 Msa0001890:intron 25.0%
! TTACGAGTTACTATTGTTTA+TGG + chr1_1:3607521-3607540 Msa0001890:three_prime_UTR 25.0%
! AGTTACTATTGTTTATGGAA+TGG + chr1_1:3607526-3607545 Msa0001890:three_prime_UTR 25.0%
!!! AAGAGAAAAAGGTTTTGATT+TGG + chr1_1:3607741-3607760 Msa0001890:three_prime_UTR 25.0%
! TTCGTATAAATATAGAGCAT+TGG + chr1_1:3607798-3607817 Msa0001890:three_prime_UTR 25.0%
! ATGTAGTTAGATAAGTTTCT+AGG + chr1_1:3607856-3607875 Msa0001890:three_prime_UTR 25.0%
! CTAACTACATAACTTTACAT+GGG + chr1_1:3607986-3608005 Msa0001890:three_prime_UTR 25.0%
! AGTATCAATGCTACATATAT+AGG - chr1_1:3608267-3608286 None:intergenic 25.0%
! TCTATCACAAAATCAAAGAA+GGG + chr1_1:3608580-3608599 Msa0001890:three_prime_UTR 25.0%
! CTTTGATATATTTCAAGACA+TGG + chr1_1:3608993-3609012 Msa0001890:intron 25.0%
! AGATTTATGCATCCATTATA+AGG - chr1_1:3609048-3609067 None:intergenic 25.0%
! ACAAGATGAAAAAATTAACG+CGG - chr1_1:3609289-3609308 None:intergenic 25.0%
! TGAACTAATGTTATGTTCAA+AGG + chr1_1:3609549-3609568 Msa0001890:three_prime_UTR 25.0%
!!! TGTTCAAAGGTATTTAGAAA+AGG + chr1_1:3609562-3609581 Msa0001890:three_prime_UTR 25.0%
!! TAAGGTTAGTTAAACAATAG+AGG - chr1_1:3609604-3609623 None:intergenic 25.0%
! TCAAAACAAAGTATAGTCAA+TGG - chr1_1:3609655-3609674 None:intergenic 25.0%
TCACACGGTAAACAAAAAAA+CGG + chr1_1:3603764-3603783 Msa0001890:CDS 30.0%
! TGATTGATGATAGAGACAAA+TGG - chr1_1:3603912-3603931 None:intergenic 30.0%
TTGTCTCTATCATCAATCAA+AGG + chr1_1:3603913-3603932 Msa0001890:CDS 30.0%
ACAAAATCGCACCAAAAAAT+GGG - chr1_1:3603970-3603989 None:intergenic 30.0%
AACAAAATCGCACCAAAAAA+TGG - chr1_1:3603971-3603990 None:intergenic 30.0%
TTTGAAAATACCATTTGGCA+TGG + chr1_1:3604084-3604103 Msa0001890:three_prime_UTR 30.0%
GATATGGGTAAGTTTCAATT+TGG + chr1_1:3604111-3604130 Msa0001890:intron 30.0%
CAGCAATAGAGAAAATCAAA+AGG - chr1_1:3604273-3604292 None:intergenic 30.0%
! AGGCTCTGATATTCAAAATT+TGG - chr1_1:3604580-3604599 None:intergenic 30.0%
TTGATGAATGTGAAACTAGA+TGG + chr1_1:3604705-3604724 Msa0001890:intron 30.0%
! CAAATCAATGTTTTCTCAAG+AGG + chr1_1:3604810-3604829 Msa0001890:three_prime_UTR 30.0%
AGCAATTCTCTGTTATATCA+CGG - chr1_1:3605078-3605097 None:intergenic 30.0%
AAAAGTTAATGTATCAGAGC+TGG - chr1_1:3605190-3605209 None:intergenic 30.0%
! TAAACAACTTCCTGATGTTT+TGG - chr1_1:3605273-3605292 None:intergenic 30.0%
AAACATCAGGAAGTTGTTTA+AGG + chr1_1:3605273-3605292 Msa0001890:three_prime_UTR 30.0%
!! CAAATCTCTGTTAGTTTGTA+AGG + chr1_1:3605434-3605453 Msa0001890:intron 30.0%
! AAATTCTACTGTTGGTGAAT+AGG - chr1_1:3605592-3605611 None:intergenic 30.0%
! TCACCAACAGTAGAATTTTA+TGG + chr1_1:3605594-3605613 Msa0001890:intron 30.0%
ATGCCATAAAATTCTACTGT+TGG - chr1_1:3605600-3605619 None:intergenic 30.0%
! AGTAAGTTATGTTAGTTTCC+CGG + chr1_1:3605959-3605978 Msa0001890:intron 30.0%
TAATCTCAAATGCATTATGC+AGG + chr1_1:3606098-3606117 Msa0001890:intron 30.0%
AAATGCATTATGCAGGTATA+CGG + chr1_1:3606105-3606124 Msa0001890:intron 30.0%
! TGACATATTGCTTCTAAAGA+AGG - chr1_1:3606219-3606238 None:intergenic 30.0%
!!! CTTTTCATCATTGGCTTAAT+AGG - chr1_1:3606340-3606359 None:intergenic 30.0%
! TGATTTTCTGATTCTGATTC+TGG + chr1_1:3606541-3606560 Msa0001890:intron 30.0%
! GATTTTCTGATTCTGATTCT+GGG + chr1_1:3606542-3606561 Msa0001890:intron 30.0%
TTAGATGGACAATGAATTTG+AGG + chr1_1:3606583-3606602 Msa0001890:intron 30.0%
TTTACTATGAGAGAGAGAAA+TGG + chr1_1:3606722-3606741 Msa0001890:three_prime_UTR 30.0%
GAACGATTATATACCTTTGT+AGG - chr1_1:3607119-3607138 None:intergenic 30.0%
ATTTGTCCAATGATCGAAAA+TGG + chr1_1:3607154-3607173 Msa0001890:intron 30.0%
! GATATTCCATTTTCGATCAT+TGG - chr1_1:3607163-3607182 None:intergenic 30.0%
TTTCAGAACTTACCTCTTAA+GGG - chr1_1:3607284-3607303 None:intergenic 30.0%
TGATAGCTTATGAAAGTTAC+TGG - chr1_1:3607392-3607411 None:intergenic 30.0%
TTGCTTCTACAGACAAAAAT+GGG - chr1_1:3607608-3607627 None:intergenic 30.0%
ATTGCTTCTACAGACAAAAA+TGG - chr1_1:3607609-3607628 None:intergenic 30.0%
ATATTCGAGTATAAACCAGT+TGG + chr1_1:3607682-3607701 Msa0001890:three_prime_UTR 30.0%
!! TAGAGCATTGGAAAAATTTG+AGG + chr1_1:3607810-3607829 Msa0001890:three_prime_UTR 30.0%
ATTTGAGGAGAAGCAAATAA+AGG + chr1_1:3607825-3607844 Msa0001890:three_prime_UTR 30.0%
!! TATTAGAGCTTTGTTAACCA+TGG + chr1_1:3607960-3607979 Msa0001890:three_prime_UTR 30.0%
GCTAACTACATAACTTTACA+TGG + chr1_1:3607985-3608004 Msa0001890:three_prime_UTR 30.0%
TAGAATTCAGAAGAAGAATC+AGG + chr1_1:3608047-3608066 Msa0001890:intron 30.0%
CACGTGTTAGTAAATACAAT+TGG + chr1_1:3608452-3608471 Msa0001890:intron 30.0%
GAACATATTAAACTGTCAGA+AGG + chr1_1:3608513-3608532 Msa0001890:intron 30.0%
GTCTATCACAAAATCAAAGA+AGG + chr1_1:3608579-3608598 Msa0001890:three_prime_UTR 30.0%
ATGTTCTTGATACCATATGA+AGG - chr1_1:3608930-3608949 None:intergenic 30.0%
AATTCTACTTATAAGGCCTT+AGG - chr1_1:3609096-3609115 None:intergenic 30.0%
GCTGCATAATTCTACTTATA+AGG - chr1_1:3609103-3609122 None:intergenic 30.0%
CTATATGCTCATGCTATATA+AGG - chr1_1:3609190-3609209 None:intergenic 30.0%
AATGATACATGATCGAACTA+TGG - chr1_1:3609262-3609281 None:intergenic 30.0%
!!! TCATCTTGTTTTGTAGATGA+TGG + chr1_1:3609300-3609319 Msa0001890:intron 30.0%
GATACCAACATTAAAAACAC+AGG - chr1_1:3609424-3609443 None:intergenic 30.0%
TAAACAATAGAGGACATCAA+TGG - chr1_1:3609594-3609613 None:intergenic 30.0%
! TTGGTGAGTATTGTGAAATA+AGG - chr1_1:3609622-3609641 None:intergenic 30.0%
ACAAAGTATAGTCAATGGAA+AGG - chr1_1:3609650-3609669 None:intergenic 30.0%
!!! GTTTTTTTGTTTACCGTGTG+AGG - chr1_1:3603765-3603784 None:intergenic 35.0%
CACACTGAGAAAGAAGAAAA+CGG - chr1_1:3603861-3603880 None:intergenic 35.0%
! TTTTCTTCTTTCTCAGTGTG+CGG + chr1_1:3603861-3603880 Msa0001890:CDS 35.0%
TGATAGAGACAAATGGAAGA+AGG - chr1_1:3603905-3603924 None:intergenic 35.0%
CTCTATCATCAATCAAAGGT+TGG + chr1_1:3603917-3603936 Msa0001890:intron 35.0%
ATTTGGCATGGATCAGATAT+GGG + chr1_1:3604096-3604115 Msa0001890:three_prime_UTR 35.0%
! GTTTCAATTTGGGATGTTAC+TGG + chr1_1:3604122-3604141 Msa0001890:intron 35.0%
CAAAAGTCCTACAGATCATT+AGG + chr1_1:3604336-3604355 Msa0001890:three_prime_UTR 35.0%
AGATGATCCTAATGATCTGT+AGG - chr1_1:3604346-3604365 None:intergenic 35.0%
AGATCATTAGGATCATCTCA+GGG + chr1_1:3604348-3604367 Msa0001890:three_prime_UTR 35.0%
!!! TAGGTTCTCACTTTTTACCA+AGG - chr1_1:3604902-3604921 None:intergenic 35.0%
CTTACCAACAAAATTGTGCA+CGG + chr1_1:3604954-3604973 Msa0001890:intron 35.0%
! TAAACCGTGCACAATTTTGT+TGG - chr1_1:3604961-3604980 None:intergenic 35.0%
! GTGCACGGTTTAGTTTATAT+TGG + chr1_1:3604969-3604988 Msa0001890:intron 35.0%
! CTATTCATTTTCTTTCCTGG+AGG + chr1_1:3605147-3605166 Msa0001890:intron 35.0%
ATCAGGAAGTTGTTTAAGGA+TGG + chr1_1:3605277-3605296 Msa0001890:three_prime_UTR 35.0%
TTAAGGATGGCTTCATTATC+AGG + chr1_1:3605290-3605309 Msa0001890:three_prime_UTR 35.0%
!! ATCTCTGTTAGTTTGTAAGG+TGG + chr1_1:3605437-3605456 Msa0001890:intron 35.0%
TTAGTTGTGCTGAGTATTCT+AGG + chr1_1:3605540-3605559 Msa0001890:intron 35.0%
! TCAACCCTATTTGAAGTGTA+TGG + chr1_1:3605653-3605672 Msa0001890:intron 35.0%
CACTCCATACACTTCAAATA+GGG - chr1_1:3605660-3605679 None:intergenic 35.0%
! TCTTATTTACAGATGTGTCG+TGG + chr1_1:3605809-3605828 Msa0001890:intron 35.0%
AGTGTATAGTAACAAAGAGC+TGG + chr1_1:3605880-3605899 Msa0001890:three_prime_UTR 35.0%
! GAGTTTAAAGTCAGAGATCT+CGG - chr1_1:3605992-3606011 None:intergenic 35.0%
! GACGTTGTATTTGACTTCAT+TGG + chr1_1:3606151-3606170 Msa0001890:three_prime_UTR 35.0%
TAGCAAACTATGAAGTGATG+AGG + chr1_1:3606241-3606260 Msa0001890:intron 35.0%
!! AGCACTGATAGAAATAGTGA+AGG - chr1_1:3606290-3606309 None:intergenic 35.0%
GGTAAGAGTGAAAAGAAATG+AGG - chr1_1:3606318-3606337 None:intergenic 35.0%
ATGGACAATGAATTTGAGGA+TGG + chr1_1:3606587-3606606 Msa0001890:three_prime_UTR 35.0%
ACAAGCAACTTCTGATATGA+TGG + chr1_1:3606610-3606629 Msa0001890:three_prime_UTR 35.0%
TGTGATTTCAGTCCTTTATC+TGG + chr1_1:3606693-3606712 Msa0001890:three_prime_UTR 35.0%
ATTTCAGTCCTTTATCTGGA+AGG + chr1_1:3606697-3606716 Msa0001890:three_prime_UTR 35.0%
AGTAAACACCTTCCAGATAA+AGG - chr1_1:3606708-3606727 None:intergenic 35.0%
AATGGAAGGACAATAGAAAG+TGG + chr1_1:3606740-3606759 Msa0001890:three_prime_UTR 35.0%
! AGTGGTTCAATTGATTCACA+TGG + chr1_1:3606758-3606777 Msa0001890:three_prime_UTR 35.0%
TCTTCCTGGATCTTCATTTA+TGG + chr1_1:3606979-3606998 Msa0001890:intron 35.0%
ATTGCACTTGCAGTTCATAT+TGG + chr1_1:3607210-3607229 Msa0001890:intron 35.0%
GCAAAATCAGGCTCTATTAT+TGG + chr1_1:3607247-3607266 Msa0001890:three_prime_UTR 35.0%
GTTTCAGAACTTACCTCTTA+AGG - chr1_1:3607285-3607304 None:intergenic 35.0%
ACAATGATCCATCAGTAAGT+AGG - chr1_1:3607356-3607375 None:intergenic 35.0%
CTATTGTTTATGGAATGGCT+AGG + chr1_1:3607531-3607550 Msa0001890:three_prime_UTR 35.0%
CTAACTACGAGGATTATTCA+GGG + chr1_1:3607562-3607581 Msa0001890:three_prime_UTR 35.0%
TAACTACGAGGATTATTCAG+GGG + chr1_1:3607563-3607582 Msa0001890:three_prime_UTR 35.0%
TGCTTCTACAGACAAAAATG+GGG - chr1_1:3607607-3607626 None:intergenic 35.0%
TGCAATATGGGAAGAGAAAA+AGG + chr1_1:3607730-3607749 Msa0001890:three_prime_UTR 35.0%
! ACCTGATTGTTTAGAGTTGA+AGG + chr1_1:3607891-3607910 Msa0001890:three_prime_UTR 35.0%
! ATTGTTTAGAGTTGAAGGCT+TGG + chr1_1:3607896-3607915 Msa0001890:three_prime_UTR 35.0%
ACTACATAACTTTACATGGG+AGG + chr1_1:3607989-3608008 Msa0001890:three_prime_UTR 35.0%
ACTTTACATGGGAGGATTAA+AGG + chr1_1:3607997-3608016 Msa0001890:three_prime_UTR 35.0%
GGATGCAGTTATAACAACAA+TGG + chr1_1:3608079-3608098 Msa0001890:intron 35.0%
!! TGGTATTCAGTTGATGATGT+TGG + chr1_1:3608099-3608118 Msa0001890:intron 35.0%
!! AGTTGATGATGTTGGTTCTT+TGG + chr1_1:3608107-3608126 Msa0001890:intron 35.0%
GATAGACTTGCAGTATTTGT+CGG - chr1_1:3608566-3608585 None:intergenic 35.0%
CTGACTAAGATGAACATGTT+TGG + chr1_1:3608710-3608729 Msa0001890:three_prime_UTR 35.0%
TTCACCTTTGCTTAGTTTCA+AGG + chr1_1:3608807-3608826 Msa0001890:intron 35.0%
GAAATGCATAACAGAAACTG+TGG + chr1_1:3609015-3609034 Msa0001890:intron 35.0%
ATGAGCATATAGATCAGTAG+TGG + chr1_1:3609198-3609217 Msa0001890:intron 35.0%
!!! CTTGTTTTGTAGATGATGGT+AGG + chr1_1:3609304-3609323 Msa0001890:intron 35.0%
AACCAACTGTTGCAGATATT+AGG - chr1_1:3609330-3609349 None:intergenic 35.0%
AAAAAACCACGCATGTGTAT+TGG + chr1_1:3609357-3609376 Msa0001890:three_prime_UTR 35.0%
!! TGCACCTGTGTTTTTAATGT+TGG + chr1_1:3609417-3609436 Msa0001890:three_prime_UTR 35.0%
AAGAAGAAAACGGTGGAGAT+TGG - chr1_1:3603851-3603870 None:intergenic 40.0%
ACTGAGAAAGAAGAAAACGG+TGG - chr1_1:3603858-3603877 None:intergenic 40.0%
!!! TGCTTGCATGTCCCATTTTT+TGG + chr1_1:3603956-3603975 Msa0001890:intron 40.0%
CATATCTGATCCATGCCAAA+TGG - chr1_1:3604097-3604116 None:intergenic 40.0%
CATTTGGCATGGATCAGATA+TGG + chr1_1:3604095-3604114 Msa0001890:three_prime_UTR 40.0%
CAGATCATTAGGATCATCTC+AGG + chr1_1:3604347-3604366 Msa0001890:three_prime_UTR 40.0%
GATCATTAGGATCATCTCAG+GGG + chr1_1:3604349-3604368 Msa0001890:three_prime_UTR 40.0%
TTTAATCGCAGCTCGATCAT+AGG - chr1_1:3604600-3604619 None:intergenic 40.0%
ATCGAGCTGCGATTAAATTC+AGG + chr1_1:3604603-3604622 Msa0001890:three_prime_UTR 40.0%
TCGAGCTGCGATTAAATTCA+GGG + chr1_1:3604604-3604623 Msa0001890:three_prime_UTR 40.0%
TGACGCAATCTACAAGATGA+TGG + chr1_1:3605106-3605125 Msa0001890:three_prime_UTR 40.0%
! TTTTCTTTCCTGGAGGATGA+TGG + chr1_1:3605154-3605173 Msa0001890:intron 40.0%
AATGTATCAGAGCTGGAACA+GGG - chr1_1:3605183-3605202 None:intergenic 40.0%
TAATGTATCAGAGCTGGAAC+AGG - chr1_1:3605184-3605203 None:intergenic 40.0%
TCTTTGTAGGCCAAAACATC+AGG + chr1_1:3605260-3605279 Msa0001890:intron 40.0%
GATAGGGAGTGAATCTTAGT+TGG - chr1_1:3605319-3605338 None:intergenic 40.0%
AAGGGACGTCATTCTAGATA+TGG + chr1_1:3605370-3605389 Msa0001890:three_prime_UTR 40.0%
GCACTCCATACACTTCAAAT+AGG - chr1_1:3605661-3605680 None:intergenic 40.0%
! AGGTTTGATCTGGCATTTTG+TGG + chr1_1:3606190-3606209 Msa0001890:intron 40.0%
TCATTCGTGGAGCAAATTAC+AGG - chr1_1:3606451-3606470 None:intergenic 40.0%
CTATGAGAGAGAGAAATGGA+AGG + chr1_1:3606726-3606745 Msa0001890:three_prime_UTR 40.0%
GTTGCCATAAATGAAGATCC+AGG - chr1_1:3606986-3607005 None:intergenic 40.0%
! AAATGTTTCTGCAAGCTGTG+CGG - chr1_1:3607081-3607100 None:intergenic 40.0%
TGTTGCAAAATGCCCTACAA+AGG + chr1_1:3607103-3607122 Msa0001890:three_prime_UTR 40.0%
ACTTGCAGTTCATATTGGCA+TGG + chr1_1:3607215-3607234 Msa0001890:intron 40.0%
!! GCATTGATTCTTCCCTTAAG+AGG + chr1_1:3607269-3607288 Msa0001890:three_prime_UTR 40.0%
GCTAACTACGAGGATTATTC+AGG + chr1_1:3607561-3607580 Msa0001890:three_prime_UTR 40.0%
CAGGGGATAAGAATTATCAG+AGG + chr1_1:3607580-3607599 Msa0001890:three_prime_UTR 40.0%
TCGAGTATAAACCAGTTGGT+TGG + chr1_1:3607686-3607705 Msa0001890:three_prime_UTR 40.0%
TCTTGATACATCCAACCAAC+TGG - chr1_1:3607700-3607719 None:intergenic 40.0%
!! AGAGAGAGCATTGTGCAATA+TGG + chr1_1:3607717-3607736 Msa0001890:three_prime_UTR 40.0%
!! GAGAGAGCATTGTGCAATAT+GGG + chr1_1:3607718-3607737 Msa0001890:three_prime_UTR 40.0%
GCCTTCAACTCTAAACAATC+AGG - chr1_1:3607895-3607914 None:intergenic 40.0%
!! TAGAGCTTTGTTAACCATGG+AGG + chr1_1:3607963-3607982 Msa0001890:three_prime_UTR 40.0%
! AGTTATGTAGTTAGCCTCCA+TGG - chr1_1:3607980-3607999 None:intergenic 40.0%
GAGGATTAAAGGTAAGTGCT+TGG + chr1_1:3608008-3608027 Msa0001890:intron 40.0%
!! AGAAGAATCAGGTTGACTGT+TGG + chr1_1:3608058-3608077 Msa0001890:intron 40.0%
ACTCTTGAGGTAAGCATCTT+CGG + chr1_1:3608197-3608216 Msa0001890:intron 40.0%
CAGTATTTGTCGGTAGAATC+AGG - chr1_1:3608556-3608575 None:intergenic 40.0%
! GAGAGCATGGTATGTAATCT+TGG + chr1_1:3608766-3608785 Msa0001890:intron 40.0%
CATGCCTTGAAACTAAGCAA+AGG - chr1_1:3608814-3608833 None:intergenic 40.0%
GTAATACAGCTCTTTGCCTA+AGG + chr1_1:3609077-3609096 Msa0001890:intron 40.0%
GTTTCAGCAATAATGCCAAC+AGG + chr1_1:3609484-3609503 Msa0001890:three_prime_UTR 40.0%
AGCAATAATGCCAACAGGAT+TGG + chr1_1:3609489-3609508 Msa0001890:three_prime_UTR 40.0%
AATGATTGTGCCAATCCTGT+TGG - chr1_1:3609502-3609521 None:intergenic 40.0%
AGTCAATGGAAAGGAGTCAT+TGG - chr1_1:3609641-3609660 None:intergenic 40.0%
GTGGAGATTGGTGTGTTCAA+CGG - chr1_1:3603839-3603858 None:intergenic 45.0%
CGAGCTGCGATTAAATTCAG+GGG + chr1_1:3604605-3604624 Msa0001890:three_prime_UTR 45.0%
GCGATTAAATTCAGGGGAGT+TGG + chr1_1:3604611-3604630 Msa0001890:three_prime_UTR 45.0%
GGAGTAACACTGCACAAATG+TGG + chr1_1:3604849-3604868 Msa0001890:three_prime_UTR 45.0%
ACTGCACAAATGTGGCAGTT+GGG + chr1_1:3604857-3604876 Msa0001890:three_prime_UTR 45.0%
CTCTGTTATATCACGGACCA+TGG - chr1_1:3605071-3605090 None:intergenic 45.0%
! TTTGGTGGCTCTCTCTTTGT+AGG + chr1_1:3605247-3605266 Msa0001890:intron 45.0%
! CTTCATCCCAGCTACTTTAG+CGG - chr1_1:3605862-3605881 None:intergenic 45.0%
AGAGATCTCGGATTTGATCC+GGG - chr1_1:3605980-3605999 None:intergenic 45.0%
CAGAGATCTCGGATTTGATC+CGG - chr1_1:3605981-3606000 None:intergenic 45.0%
TTAGAAGTCCCACACTACGA+AGG - chr1_1:3606047-3606066 None:intergenic 45.0%
TTATGCAGGTATACGGCAGA+TGG + chr1_1:3606112-3606131 Msa0001890:intron 45.0%
CAGAGAAGCTAACTCATTCG+TGG - chr1_1:3606464-3606483 None:intergenic 45.0%
TGATGGCAAGCAGTCAACAA+AGG + chr1_1:3606627-3606646 Msa0001890:three_prime_UTR 45.0%
TGGCAGCAAAGTGCAAAATC+AGG + chr1_1:3607235-3607254 Msa0001890:three_prime_UTR 45.0%
TGCAGAAGCCTACTTACTGA+TGG + chr1_1:3607345-3607364 Msa0001890:intron 45.0%
CTGAAAGCAGGAACGAAAAG+AGG - chr1_1:3607482-3607501 None:intergenic 45.0%
TTCCTGCTTTCAGCTATGAG+AGG + chr1_1:3607489-3607508 Msa0001890:intron 45.0%
TCCTGCTTTCAGCTATGAGA+GGG + chr1_1:3607490-3607509 Msa0001890:intron 45.0%
GTCGATATGATTCTCACACG+TGG + chr1_1:3608316-3608335 Msa0001890:intron 45.0%
TGTGGCGCGAATCCTTATAA+TGG + chr1_1:3609033-3609052 Msa0001890:intron 45.0%
GGCCTAATATCTGCAACAGT+TGG + chr1_1:3609325-3609344 Msa0001890:three_prime_UTR 45.0%
AAACCACGCATGTGTATTGG+TGG + chr1_1:3609360-3609379 Msa0001890:three_prime_UTR 45.0%
CATTAGGATCATCTCAGGGG+TGG + chr1_1:3604352-3604371 Msa0001890:three_prime_UTR 50.0%
ACACAGCTCATGTTGCTGCT+AGG + chr1_1:3604491-3604510 Msa0001890:three_prime_UTR 50.0%
AGAGGGAGTTCGAAGTACAG+AGG + chr1_1:3604828-3604847 Msa0001890:three_prime_UTR 50.0%
CACTGCACAAATGTGGCAGT+TGG + chr1_1:3604856-3604875 Msa0001890:three_prime_UTR 50.0%
GCTCGAATGGGTCAATTCCT+TGG + chr1_1:3604882-3604901 Msa0001890:three_prime_UTR 50.0%
TTTAAATTGTGGCCGCGCCA+TGG + chr1_1:3605051-3605070 Msa0001890:three_prime_UTR 50.0%
TTATATCACGGACCATGGCG+CGG - chr1_1:3605066-3605085 None:intergenic 50.0%
TTCACTCCCTATCCTGTGCT+AGG + chr1_1:3605326-3605345 Msa0001890:three_prime_UTR 50.0%
ATGAAGGAGGCCAAGAGGAA+GGG + chr1_1:3605352-3605371 Msa0001890:three_prime_UTR 50.0%
AGAATGACGTCCCTTCCTCT+TGG - chr1_1:3605365-3605384 None:intergenic 50.0%
TTACAGATGTGTCGTGGTCG+AGG + chr1_1:3605815-3605834 Msa0001890:intron 50.0%
TAGCAGCCGCTAAAGTAGCT+GGG + chr1_1:3605853-3605872 Msa0001890:three_prime_UTR 50.0%
GGTGAGCTAAGGGACATTGA+AGG - chr1_1:3606014-3606033 None:intergenic 50.0%
! CTTCATTGGTGATCCTCCTG+AGG + chr1_1:3606165-3606184 Msa0001890:three_prime_UTR 50.0%
AGATCAAACCTCTCCTCAGG+AGG - chr1_1:3606181-3606200 None:intergenic 50.0%
TCCTGAGGAGAGGTTTGATC+TGG + chr1_1:3606180-3606199 Msa0001890:intron 50.0%
TCCCTCTCATAGCTGAAAGC+AGG - chr1_1:3607494-3607513 None:intergenic 50.0%
AGGTTGTGCAGCTAACTACG+AGG + chr1_1:3607551-3607570 Msa0001890:three_prime_UTR 50.0%
CAGATGCTAGAGAATGAGCC+TGG + chr1_1:3608141-3608160 Msa0001890:intron 50.0%
AACTCTAGCAGGCTCTTTCC+AGG - chr1_1:3608162-3608181 None:intergenic 50.0%
GTCTGTCGCTACTACTCTTG+AGG + chr1_1:3608184-3608203 Msa0001890:three_prime_UTR 50.0%
CATCCACCAATACACATGCG+TGG - chr1_1:3609366-3609385 None:intergenic 50.0%
CCGTGTGAGGAGAAGAGAAC+CGG - chr1_1:3603752-3603771 None:intergenic 55.0%
CCGGTTCTCTTCTCCTCACA+CGG + chr1_1:3603749-3603768 Msa0001890:CDS 55.0%
GATTGGTGTGTTCAACGGCG+AGG - chr1_1:3603834-3603853 None:intergenic 55.0%
AGGATCATCTCAGGGGTGGA+CGG + chr1_1:3604356-3604375 Msa0001890:three_prime_UTR 55.0%
TGGCAGTTGGGAAGCTCGAA+TGG + chr1_1:3604869-3604888 Msa0001890:three_prime_UTR 55.0%
GGCAGTTGGGAAGCTCGAAT+GGG + chr1_1:3604870-3604889 Msa0001890:three_prime_UTR 55.0%
CAGGGTAACCATCATCCTCC+AGG - chr1_1:3605165-3605184 None:intergenic 55.0%
CATGCGCCTAGCACAGGATA+GGG - chr1_1:3605335-3605354 None:intergenic 55.0%
TCATGCGCCTAGCACAGGAT+AGG - chr1_1:3605336-3605355 None:intergenic 55.0%
ATCCTGTGCTAGGCGCATGA+AGG + chr1_1:3605336-3605355 Msa0001890:three_prime_UTR 55.0%
CATGAAGGAGGCCAAGAGGA+AGG + chr1_1:3605351-3605370 Msa0001890:three_prime_UTR 55.0%
CTAGCAGCCGCTAAAGTAGC+TGG + chr1_1:3605852-3605871 Msa0001890:three_prime_UTR 55.0%
!! CAGCTCGGTTGGTGAGCTAA+GGG - chr1_1:3606024-3606043 None:intergenic 55.0%
! TTGGTGATCCTCCTGAGGAG+AGG + chr1_1:3606170-3606189 Msa0001890:three_prime_UTR 55.0%
GCCAGATCAAACCTCTCCTC+AGG - chr1_1:3606184-3606203 None:intergenic 55.0%
GCGACAGACGAAACTCTAGC+AGG - chr1_1:3608173-3608192 None:intergenic 55.0%
GTGTTCAACGGCGAGGTCGA+CGG - chr1_1:3603827-3603846 None:intergenic 60.0%
CTCCTTCATGCGCCTAGCAC+AGG - chr1_1:3605341-3605360 None:intergenic 60.0%
CTGTGCTAGGCGCATGAAGG+AGG + chr1_1:3605339-3605358 Msa0001890:three_prime_UTR 60.0%
GTGGTCGAGGACAGCGCTAT+AGG + chr1_1:3605828-3605847 Msa0001890:three_prime_UTR 60.0%
!! GCAGCTCGGTTGGTGAGCTA+AGG - chr1_1:3606025-3606044 None:intergenic 60.0%
CACTACGAAGGCAGCTCGGT+TGG - chr1_1:3606035-3606054 None:intergenic 60.0%
ACCGAGCTGCCTTCGTAGTG+TGG + chr1_1:3606035-3606054 Msa0001890:intron 60.0%
CCCACACTACGAAGGCAGCT+CGG - chr1_1:3606039-3606058 None:intergenic 60.0%
CCGAGCTGCCTTCGTAGTGT+GGG + chr1_1:3606036-3606055 Msa0001890:intron 60.0%
GCACATGGCGTTCGAGAGCA+TGG + chr1_1:3608753-3608772 Msa0001890:three_prime_UTR 60.0%
TTCAACGGCGAGGTCGACGG+AGG - chr1_1:3603824-3603843 None:intergenic 65.0%
GGCGCATGAAGGAGGCCAAG+AGG + chr1_1:3605347-3605366 Msa0001890:three_prime_UTR 65.0%
! GACGGCAAGGTGGCGGTGTG+AGG - chr1_1:3603800-3603819 None:intergenic 70.0%
CGGAGGAGACGGCAAGGTGG+CGG - chr1_1:3603807-3603826 None:intergenic 70.0%
CGACGGAGGAGACGGCAAGG+TGG - chr1_1:3603810-3603829 None:intergenic 70.0%
GGTCGACGGAGGAGACGGCA+AGG - chr1_1:3603813-3603832 None:intergenic 70.0%
GGCGAGGTCGACGGAGGAGA+CGG - chr1_1:3603818-3603837 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 3603743 3609687 3603743 ID=Msa0001890;Name=Msa0001890
chr1_1 mRNA 3603743 3609687 3603743 ID=Msa0001890-mRNA-1;Parent=Msa0001890;Name=Msa0001890-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|1|0.94|1|0.29|0.44|18|2163|65
chr1_1 exon 3603743 3603934 3603743 ID=Msa0001890-mRNA-1:exon:1043;Parent=Msa0001890-mRNA-1
chr1_1 exon 3604063 3604117 3604063 ID=Msa0001890-mRNA-1:exon:1044;Parent=Msa0001890-mRNA-1
chr1_1 exon 3604322 3604377 3604322 ID=Msa0001890-mRNA-1:exon:1045;Parent=Msa0001890-mRNA-1
chr1_1 exon 3604482 3604512 3604482 ID=Msa0001890-mRNA-1:exon:1046;Parent=Msa0001890-mRNA-1
chr1_1 exon 3604595 3604682 3604595 ID=Msa0001890-mRNA-1:exon:1047;Parent=Msa0001890-mRNA-1
chr1_1 exon 3604765 3604910 3604765 ID=Msa0001890-mRNA-1:exon:1048;Parent=Msa0001890-mRNA-1
chr1_1 exon 3605043 3605127 3605043 ID=Msa0001890-mRNA-1:exon:1049;Parent=Msa0001890-mRNA-1
chr1_1 exon 3605269 3605391 3605269 ID=Msa0001890-mRNA-1:exon:1050;Parent=Msa0001890-mRNA-1
chr1_1 exon 3605821 3605901 3605821 ID=Msa0001890-mRNA-1:exon:1051;Parent=Msa0001890-mRNA-1
chr1_1 exon 3606120 3606191 3606120 ID=Msa0001890-mRNA-1:exon:1052;Parent=Msa0001890-mRNA-1
chr1_1 exon 3606587 3606779 3606587 ID=Msa0001890-mRNA-1:exon:1053;Parent=Msa0001890-mRNA-1
chr1_1 exon 3607057 3607124 3607057 ID=Msa0001890-mRNA-1:exon:1054;Parent=Msa0001890-mRNA-1
chr1_1 exon 3607223 3607290 3607223 ID=Msa0001890-mRNA-1:exon:1055;Parent=Msa0001890-mRNA-1
chr1_1 exon 3607502 3608018 3607502 ID=Msa0001890-mRNA-1:exon:1056;Parent=Msa0001890-mRNA-1
chr1_1 exon 3608144 3608205 3608144 ID=Msa0001890-mRNA-1:exon:1057;Parent=Msa0001890-mRNA-1
chr1_1 exon 3608532 3608601 3608532 ID=Msa0001890-mRNA-1:exon:1058;Parent=Msa0001890-mRNA-1
chr1_1 exon 3608693 3608774 3608693 ID=Msa0001890-mRNA-1:exon:1059;Parent=Msa0001890-mRNA-1
chr1_1 exon 3609316 3609687 3609316 ID=Msa0001890-mRNA-1:exon:1060;Parent=Msa0001890-mRNA-1
chr1_1 CDS 3603743 3603934 3603743 ID=Msa0001890-mRNA-1:cds;Parent=Msa0001890-mRNA-1
chr1_1 CDS 3604063 3604068 3604063 ID=Msa0001890-mRNA-1:cds;Parent=Msa0001890-mRNA-1
chr1_1 three_prime_UTR 3604069 3604117 3604069 ID=Msa0001890-mRNA-1:three_prime_utr;Parent=Msa0001890-mRNA-1
chr1_1 three_prime_UTR 3604322 3604377 3604322 ID=Msa0001890-mRNA-1:three_prime_utr;Parent=Msa0001890-mRNA-1
chr1_1 three_prime_UTR 3604482 3604512 3604482 ID=Msa0001890-mRNA-1:three_prime_utr;Parent=Msa0001890-mRNA-1
chr1_1 three_prime_UTR 3604595 3604682 3604595 ID=Msa0001890-mRNA-1:three_prime_utr;Parent=Msa0001890-mRNA-1
chr1_1 three_prime_UTR 3604765 3604910 3604765 ID=Msa0001890-mRNA-1:three_prime_utr;Parent=Msa0001890-mRNA-1
chr1_1 three_prime_UTR 3605043 3605127 3605043 ID=Msa0001890-mRNA-1:three_prime_utr;Parent=Msa0001890-mRNA-1
chr1_1 three_prime_UTR 3605269 3605391 3605269 ID=Msa0001890-mRNA-1:three_prime_utr;Parent=Msa0001890-mRNA-1
chr1_1 three_prime_UTR 3605821 3605901 3605821 ID=Msa0001890-mRNA-1:three_prime_utr;Parent=Msa0001890-mRNA-1
chr1_1 three_prime_UTR 3606120 3606191 3606120 ID=Msa0001890-mRNA-1:three_prime_utr;Parent=Msa0001890-mRNA-1
chr1_1 three_prime_UTR 3606587 3606779 3606587 ID=Msa0001890-mRNA-1:three_prime_utr;Parent=Msa0001890-mRNA-1
chr1_1 three_prime_UTR 3607057 3607124 3607057 ID=Msa0001890-mRNA-1:three_prime_utr;Parent=Msa0001890-mRNA-1
chr1_1 three_prime_UTR 3607223 3607290 3607223 ID=Msa0001890-mRNA-1:three_prime_utr;Parent=Msa0001890-mRNA-1
chr1_1 three_prime_UTR 3607502 3608018 3607502 ID=Msa0001890-mRNA-1:three_prime_utr;Parent=Msa0001890-mRNA-1
chr1_1 three_prime_UTR 3608144 3608205 3608144 ID=Msa0001890-mRNA-1:three_prime_utr;Parent=Msa0001890-mRNA-1
chr1_1 three_prime_UTR 3608532 3608601 3608532 ID=Msa0001890-mRNA-1:three_prime_utr;Parent=Msa0001890-mRNA-1
chr1_1 three_prime_UTR 3608693 3608774 3608693 ID=Msa0001890-mRNA-1:three_prime_utr;Parent=Msa0001890-mRNA-1
chr1_1 three_prime_UTR 3609316 3609687 3609316 ID=Msa0001890-mRNA-1:three_prime_utr;Parent=Msa0001890-mRNA-1
Gene Sequence

>Msa0001890

TTCAGTCCGGTTCTCTTCTCCTCACACGGTAAACAAAAAAACGGTTCTCTTCTTCCTCACACCGCCACCTTGCCGTCTCCTCCGTCGACCTCGCCGTTGAACACACCAATCTCCACCGTTTTCTTCTTTCTCAGTGTGCGGCGTCTTCTTCGTTTTGCTCCTTCTTCCATTTGTCTCTATCATCAATCAAAGTTCTGA
Protein sequence

>Msa0001890

FSPVLFSSHGKQKNGSLLPHTATLPSPPSTSPLNTPISTVFFFLSVRRLLRFAPSSICLYHQSKF*