AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0067890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0067890 MtrunA17_Chr3g0126151 88.750 80 9 0 76 155 47 126 2.93e-43 148
Msa0067890 MtrunA17_Chr3g0105811 72.441 127 5 1 296 392 537 663 2.27e-37 145
Msa0067890 MtrunA17_Chr4g0030191 63.235 136 42 1 65 192 158 293 5.84e-37 140
Msa0067890 MtrunA17_Chr4g0005681 47.143 140 44 1 283 392 548 687 2.17e-33 133
Msa0067890 MtrunA17_Chr7g0243131 48.062 129 37 1 294 392 300 428 1.45e-31 127
Msa0067890 MtrunA17_Chr7g0263581 65.487 113 36 2 65 174 166 278 5.15e-30 121
Msa0067890 MtrunA17_Chr4g0053181 57.037 135 50 1 65 191 203 337 9.08e-30 121
Msa0067890 MtrunA17_Chr5g0401891 66.372 113 35 2 65 174 179 291 1.71e-29 120
Msa0067890 MtrunA17_Chr2g0325911 73.333 90 24 0 65 154 161 250 9.03e-28 114
Msa0067890 MtrunA17_Chr3g0116461 86.364 66 9 0 153 218 256 321 2.63e-27 111
Msa0067890 MtrunA17_Chr1g0185181 38.621 145 55 2 278 392 484 624 5.01e-21 95.9
Msa0067890 MtrunA17_Chr6g0452911 39.316 117 70 1 60 175 103 219 4.49e-19 88.6
Msa0067890 MtrunA17_Chr4g0054351 45.556 90 48 1 65 153 350 439 1.23e-18 88.6
Msa0067890 MtrunA17_Chr3g0135161 45.055 91 49 1 64 153 346 436 2.19e-18 87.8
Msa0067890 MtrunA17_Chr7g0216601 39.286 112 67 1 65 175 105 216 2.68e-18 86.3
Msa0067890 MtrunA17_Chr8g0367311 35.664 143 82 3 43 176 1 142 3.25e-18 84.0
Msa0067890 MtrunA17_Chr8g0343851 37.705 122 67 3 64 176 284 405 4.34e-17 83.6
Msa0067890 MtrunA17_Chr4g0072291 32.317 164 93 4 65 224 199 348 5.12e-17 83.2
Msa0067890 MtrunA17_Chr4g0073521 36.567 134 76 2 64 196 83 208 7.80e-17 81.6
Msa0067890 MtrunA17_Chr1g0152161 36.066 122 69 3 64 176 348 469 8.25e-17 82.8
Msa0067890 MtrunA17_Chr8g0355191 38.211 123 67 3 64 177 91 213 8.88e-17 82.0
Msa0067890 MtrunA17_Chr5g0412151 44.444 90 49 1 65 153 264 353 2.82e-16 80.9
Msa0067890 MtrunA17_Chr5g0400871 44.444 90 49 1 65 153 289 378 2.88e-16 80.9
Msa0067890 MtrunA17_Chr7g0249621 35.537 121 69 3 65 176 299 419 8.23e-16 79.7
Msa0067890 MtrunA17_Chr2g0328971 29.353 201 111 5 64 247 203 389 9.15e-16 79.3
Msa0067890 MtrunA17_Chr4g0032631 33.884 121 71 3 65 176 203 323 2.17e-15 78.2
Msa0067890 MtrunA17_Chr8g0355181 38.938 113 68 1 64 175 92 204 1.76e-12 68.6
Msa0067890 MtrunA17_Chr8g0362541 45.055 91 49 1 64 153 105 195 3.27e-12 67.8
Msa0067890 MtrunA17_Chr4g0002011 35.345 116 66 2 82 196 93 200 5.27e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0067890 AT4G36920.1 67.257 113 34 2 65 174 158 270 7.50e-31 123
Msa0067890 AT4G36920.2 67.257 113 34 2 65 174 158 270 7.50e-31 123
Msa0067890 AT2G28550.4 63.393 112 41 0 65 176 180 291 3.15e-30 120
Msa0067890 AT3G51770.2 45.000 140 47 1 283 392 556 695 3.16e-30 124
Msa0067890 AT3G51770.1 45.000 140 47 1 283 392 548 687 3.36e-30 124
Msa0067890 AT2G28550.5 75.556 90 22 0 65 154 14 103 3.53e-30 118
Msa0067890 AT2G28550.2 76.404 89 21 0 65 153 180 268 5.59e-30 117
Msa0067890 AT2G28550.6 76.404 89 21 0 65 153 180 268 5.59e-30 117
Msa0067890 AT2G28550.3 68.571 105 31 1 65 167 180 284 4.15e-29 119
Msa0067890 AT2G28550.1 75.556 90 22 0 65 154 180 269 6.38e-29 118
Msa0067890 AT5G67180.4 62.069 116 41 2 65 178 123 237 2.20e-28 112
Msa0067890 AT5G67180.3 63.717 113 38 2 65 174 123 235 5.50e-28 112
Msa0067890 AT5G67180.2 63.717 113 38 2 65 174 123 235 8.57e-28 112
Msa0067890 AT5G58550.1 44.882 127 40 1 296 392 527 653 1.15e-27 116
Msa0067890 AT5G67180.1 63.717 113 38 2 65 174 123 235 1.20e-27 113
Msa0067890 AT3G48420.1 89.655 58 6 0 153 210 252 309 2.77e-23 100
Msa0067890 AT5G60120.6 60.920 87 34 0 65 151 187 273 3.30e-18 87.0
Msa0067890 AT5G60120.1 60.920 87 34 0 65 151 187 273 3.65e-18 87.0
Msa0067890 AT5G60120.2 60.920 87 34 0 65 151 187 273 4.18e-18 87.0
Msa0067890 AT5G60120.4 60.920 87 34 0 65 151 187 273 4.37e-18 86.3
Msa0067890 AT5G60120.3 60.920 87 34 0 65 151 187 273 4.37e-18 86.3
Msa0067890 AT5G60120.5 60.920 87 34 0 65 151 187 273 4.37e-18 86.3
Msa0067890 AT2G39250.2 54.167 72 33 0 65 136 135 206 1.27e-17 82.4
Msa0067890 AT2G39250.1 54.167 72 33 0 65 136 135 206 2.61e-17 82.8
Msa0067890 AT1G72570.1 36.364 121 68 3 65 176 260 380 1.48e-16 81.6
Msa0067890 AT1G51190.1 35.537 121 69 3 65 176 227 347 1.65e-16 82.0
Msa0067890 AT5G57390.2 33.121 157 87 4 65 217 122 264 1.66e-16 81.6
Msa0067890 AT5G57390.1 33.121 157 87 4 65 217 240 382 1.98e-16 82.0
Msa0067890 AT5G17430.1 36.364 121 68 3 65 176 247 367 5.02e-16 80.9
Msa0067890 AT5G17430.2 36.364 121 68 3 65 176 185 305 5.29e-16 80.5
Msa0067890 AT4G37750.1 42.222 90 51 1 65 153 320 409 1.18e-15 79.3
Msa0067890 AT5G10510.3 41.237 97 56 1 58 153 318 414 1.36e-15 79.3
Msa0067890 AT5G65510.3 43.333 90 50 1 65 153 210 299 1.81e-15 77.4
Msa0067890 AT5G10510.2 41.758 91 52 1 64 153 263 353 2.34e-15 78.6
Msa0067890 AT5G65510.2 43.333 90 50 1 65 153 268 357 2.54e-15 78.2
Msa0067890 AT5G65510.1 43.333 90 50 1 65 153 268 357 2.54e-15 78.2
Msa0067890 AT5G65510.4 43.333 90 50 1 65 153 210 299 2.57e-15 78.2
Msa0067890 AT5G10510.6 42.222 90 51 1 65 153 305 394 3.28e-15 78.2
Msa0067890 AT5G10510.4 42.222 90 51 1 65 153 305 394 3.28e-15 78.2
Msa0067890 AT5G10510.7 42.222 90 51 1 65 153 267 356 3.71e-15 77.8
Msa0067890 AT5G10510.5 42.222 90 51 1 65 153 267 356 3.71e-15 77.8
Msa0067890 AT5G10510.1 42.222 90 51 1 65 153 290 379 3.80e-15 77.8
Msa0067890 AT3G20840.1 33.884 121 71 3 65 176 218 338 4.58e-15 77.8
Msa0067890 AT3G54320.4 42.222 90 51 1 65 153 36 125 6.52e-15 76.3
Msa0067890 AT3G54320.5 42.222 90 51 1 65 153 36 125 6.52e-15 76.3
Msa0067890 AT3G54320.3 42.222 90 51 1 65 153 102 191 7.99e-15 76.6
Msa0067890 AT3G54320.1 42.222 90 51 1 65 153 102 191 8.71e-15 76.3
Msa0067890 AT3G54990.2 57.500 80 34 0 65 144 149 228 2.26e-13 70.1
Msa0067890 AT3G54990.1 61.333 75 29 0 65 139 149 223 5.68e-13 70.1
Msa0067890 AT1G79700.4 44.681 94 51 1 65 157 7 100 2.38e-12 67.0
Msa0067890 AT1G79700.3 44.681 94 51 1 65 157 13 106 2.57e-12 67.0
Msa0067890 AT1G79700.2 44.681 94 51 1 65 157 89 182 7.31e-12 66.6
Msa0067890 AT1G16060.3 42.105 76 43 1 83 157 43 118 2.60e-11 64.3
Msa0067890 AT1G16060.1 44.444 72 39 1 83 153 113 184 5.30e-11 64.3

Find 105 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATCATTGTTTCATAATT+TGG 0.097345 1_2:-33194596 Msa0067890:CDS
ACTTTACATGGGAGGATTAA+AGG 0.234605 1_2:-33193963 Msa0067890:intron
ATGTAGTTAGATAAGTTTCT+AGG 0.272462 1_2:-33194104 Msa0067890:intron
TGTGATTTCAGTCCTTTATC+TGG 0.308734 1_2:-33195270 Msa0067890:intron
AGTTGATGATGTTGGTTCTT+TGG 0.313516 1_2:-33193853 Msa0067890:CDS
GTTTCAGAACTTACCTCTTA+AGG 0.317681 1_2:+33194679 None:intergenic
ACCTGATTGTTTAGAGTTGA+AGG 0.318328 1_2:-33194069 Msa0067890:CDS
GAACGATTATATACCTTTGT+AGG 0.358428 1_2:+33194845 None:intergenic
CAGTATTTGCCGGTAGAATC+AGG 0.358742 1_2:+33193407 None:intergenic
AACTCTAGCAGGCTCTTTCC+AGG 0.361101 1_2:+33193801 None:intergenic
TTTCAGAACTTACCTCTTAA+GGG 0.361709 1_2:+33194680 None:intergenic
ATTGCACTTGCAGTTCATAT+TGG 0.363079 1_2:-33194751 Msa0067890:intron
ATCGAGCTGCGATTAAATTC+AGG 0.379752 1_2:-33197331 Msa0067890:CDS
AGTAAACACCTTCCAGATAA+AGG 0.389171 1_2:+33195258 None:intergenic
AAATGCATTATGCAGGTATA+CGG 0.405222 1_2:-33195858 Msa0067890:intron
GCATTGATTCTTCCCTTAAG+AGG 0.406835 1_2:-33194692 Msa0067890:intron
GATAGACTTGCAGTATTTGC+CGG 0.410071 1_2:+33193397 None:intergenic
GACGTTGTATTTGACTTCAT+TGG 0.414112 1_2:-33195812 Msa0067890:CDS
TTCCTTCTTCTTCTTCAGTC+CGG 0.423114 1_2:-33198204 None:intergenic
CACACTGAGAAAGAAGAAAA+TGG 0.425666 1_2:+33198075 None:intergenic
TTGGTGAGTATTGTGAAATA+AGG 0.427114 1_2:+33192354 None:intergenic
GCAAAATCAGGCTCTACTAT+TGG 0.434597 1_2:-33194714 Msa0067890:CDS
AGCAATAATGCCAACAGGAT+TGG 0.436526 1_2:-33192484 Msa0067890:three_prime_UTR
TTATGATGATGATCTTAAAC+AGG 0.440099 1_2:-33197273 Msa0067890:intron
TTTAATCGCAGCTCGATCAT+AGG 0.441826 1_2:+33197337 None:intergenic
AACCAACTGTTGCAGATATT+AGG 0.442398 1_2:+33192645 None:intergenic
CTAGCAGCCGCTAAAGTAGC+TGG 0.453585 1_2:-33196111 Msa0067890:CDS
TGGCAGCAAAGTGCAAAATC+AGG 0.459814 1_2:-33194726 Msa0067890:CDS
TGTTCAAAGGTATTTAGAAA+AGG 0.464068 1_2:-33192411 Msa0067890:three_prime_UTR
GTCTATCACAAAATCAAAGA+AGG 0.465270 1_2:-33193381 Msa0067890:CDS
GCCTTCAACTCTAAACAATC+AGG 0.470343 1_2:+33194068 None:intergenic
AAGAAGAAAATGGTGGAGAT+TGG 0.471464 1_2:+33198085 None:intergenic
TCCTGAGGAGAGGTTTGATC+TGG 0.473131 1_2:-33195783 Msa0067890:CDS
GTGGTCGAGGACAGCGCTAT+AGG 0.473850 1_2:-33196135 Msa0067890:CDS
TGCAGAAGCCTACTTACTGA+TGG 0.478114 1_2:-33194616 Msa0067890:intron
GTTTCAGCAATAATGCCAAC+AGG 0.481394 1_2:-33192489 Msa0067890:three_prime_UTR
TAAGGTTAGTTAAACAATAG+AGG 0.481505 1_2:+33192372 None:intergenic
TGAACTAATGTTATGTTCAA+AGG 0.485312 1_2:-33192424 Msa0067890:three_prime_UTR
TGGCAGTTGGGAAGCTCGAA+TGG 0.485503 1_2:-33197065 Msa0067890:CDS
ATTTCAGTCCTTTATCTGGA+AGG 0.490219 1_2:-33195266 Msa0067890:intron
AGTCAATGGAAAGGAGTCAT+TGG 0.496054 1_2:+33192335 None:intergenic
GCTAACTACATAACTTTACA+TGG 0.496572 1_2:-33193975 Msa0067890:CDS
GCGATTAAATTCAGGGGAGT+TGG 0.497882 1_2:-33197323 Msa0067890:CDS
CTTCATCCCAGCTACTTTAG+CGG 0.503426 1_2:+33196104 None:intergenic
GCCAGATCAAACCTCTCCTC+AGG 0.506138 1_2:+33195782 None:intergenic
CAGATGCTAGAGAATGAGCC+TGG 0.507226 1_2:-33193819 Msa0067890:CDS
TCAAAACAAAGTATAGTCAA+TGG 0.507968 1_2:+33192321 None:intergenic
CACTGCACAAATGTGGCAGT+TGG 0.508097 1_2:-33197078 Msa0067890:CDS
GCTCGAATGGGTCAATTCCT+TGG 0.510521 1_2:-33197052 Msa0067890:CDS
ACTGCACAAATGTGGCAGTT+GGG 0.511914 1_2:-33197077 Msa0067890:CDS
CCGTGTGAGGAGAAGAGAAC+CGG 0.514670 1_2:+33198185 None:intergenic
AGATACTTGCCTGATTCTAC+CGG 0.514786 1_2:-33193416 Msa0067890:CDS
AACGATTATATACCTTTGTA+GGG 0.515993 1_2:+33194846 None:intergenic
GGCGAGGTCGACGGAGGAGA+CGG 0.516043 1_2:+33198118 None:intergenic
TTACAGATGTGTCGTGGTCG+AGG 0.524433 1_2:-33196148 Msa0067890:intron
AGTTATGTAGTTAGCCTCCA+TGG 0.526706 1_2:+33193983 None:intergenic
ACAATGATCCATCAGTAAGT+AGG 0.529454 1_2:+33194608 None:intergenic
GTGTTCAACGGCGAGGTCGA+CGG 0.530961 1_2:+33198109 None:intergenic
CGGAGGAGACGGCAAGGTGG+CGG 0.535976 1_2:+33198129 None:intergenic
ATTGTTTAGAGTTGAAGGCT+TGG 0.537047 1_2:-33194064 Msa0067890:CDS
TCGAGCTGCGATTAAATTCA+GGG 0.538997 1_2:-33197330 Msa0067890:CDS
GACGGCAAGGTGGCGGTGTG+AGG 0.539935 1_2:+33198136 None:intergenic
GTCTGTCGCTACTACTCTTG+AGG 0.550215 1_2:-33193776 Msa0067890:intron
TTGGTGATCCTCCTGAGGAG+AGG 0.552332 1_2:-33195793 Msa0067890:CDS
ACACAGCTCATGTTGCTGCT+AGG 0.553358 1_2:-33197442 Msa0067890:intron
TATTAGAGCTTTGTTAACCA+TGG 0.554431 1_2:-33194000 Msa0067890:CDS
GGCCTAATATCTGCAACAGT+TGG 0.557391 1_2:-33192647 Msa0067890:CDS
TAAACAATAGAGGACATCAA+TGG 0.561945 1_2:+33192382 None:intergenic
AAACCACGCATGTGTATTGG+TGG 0.565338 1_2:-33192612 Msa0067890:CDS
CCGGTTCTCTTCTCCTCACA+CGG 0.565646 1_2:-33198185 Msa0067890:CDS
TTATGCAGGTATACGGCAGA+TGG 0.570206 1_2:-33195851 Msa0067890:intron
GGCAGTTGGGAAGCTCGAAT+GGG 0.571868 1_2:-33197064 Msa0067890:CDS
AGTGTATAGTAACAAAGAGC+GGG 0.580787 1_2:-33196083 Msa0067890:intron
TTGTCTCTATCATCAATCAA+AGG 0.583253 1_2:-33198020 Msa0067890:intron
TGGTATTCAGTTGATGATGT+TGG 0.588095 1_2:-33193861 Msa0067890:intron
GCGACAGACGAAACTCTAGC+AGG 0.588210 1_2:+33193790 None:intergenic
ACAAAGTATAGTCAATGGAA+AGG 0.588594 1_2:+33192326 None:intergenic
TCTATCACAAAATCAAAGAA+GGG 0.593364 1_2:-33193380 Msa0067890:intron
GAACAGATTAAACTGTCAGA+AGG 0.597977 1_2:-33193447 Msa0067890:intron
TCTTATTTACAGATGTGTCG+TGG 0.600555 1_2:-33196154 Msa0067890:intron
TGTTGCAAAATGCCCTACAA+AGG 0.603887 1_2:-33194858 Msa0067890:intron
AATGGAAGGACAATAGAAAG+TGG 0.612556 1_2:-33195221 Msa0067890:CDS
ACTTGCAGTTCATATTGGCA+TGG 0.614305 1_2:-33194746 Msa0067890:intron
TAGCAGCCGCTAAAGTAGCT+GGG 0.615799 1_2:-33196110 Msa0067890:CDS
TGATTGATGATAGAGACAAA+CGG 0.617251 1_2:+33198024 None:intergenic
TAGAGCTTTGTTAACCATGG+AGG 0.620374 1_2:-33193997 Msa0067890:CDS
CTTCATTGGTGATCCTCCTG+AGG 0.623430 1_2:-33195798 Msa0067890:CDS
AGATCAAACCTCTCCTCAGG+AGG 0.625024 1_2:+33195785 None:intergenic
ACTACATAACTTTACATGGG+AGG 0.625525 1_2:-33193971 Msa0067890:CDS
AAGTGTATAGTAACAAAGAG+CGG 0.628437 1_2:-33196084 Msa0067890:CDS
AATGATTGTGCCAATCCTGT+TGG 0.632692 1_2:+33192474 None:intergenic
AGTGGTTCAATTAATTCACA+TGG 0.632880 1_2:-33195203 Msa0067890:intron
TGATACCAACATTAAAACAC+AGG 0.636892 1_2:+33192551 None:intergenic
GGTCGACGGAGGAGACGGCA+AGG 0.637294 1_2:+33198123 None:intergenic
GGAGTAACACTGCACAAATG+TGG 0.639362 1_2:-33197085 Msa0067890:CDS
GATTGGTGTGTTCAACGGCG+AGG 0.643453 1_2:+33198102 None:intergenic
GTGGAGATTGGTGTGTTCAA+CGG 0.645802 1_2:+33198097 None:intergenic
TTCAACGGCGAGGTCGACGG+AGG 0.650561 1_2:+33198112 None:intergenic
ACTGAGAAAGAAGAAAATGG+TGG 0.665893 1_2:+33198078 None:intergenic
AGAGGGAGTTCGAAGTACAG+AGG 0.669918 1_2:-33197106 Msa0067890:CDS
CTAACTACATAACTTTACAT+GGG 0.671104 1_2:-33193974 Msa0067890:CDS
CGACGGAGGAGACGGCAAGG+TGG 0.673937 1_2:+33198126 None:intergenic
CGAGCTGCGATTAAATTCAG+GGG 0.681626 1_2:-33197329 Msa0067890:CDS
AAATGTTTCTGCAAGCTGTG+CGG 0.691119 1_2:+33194883 None:intergenic
CATCCACCAATACACATGCG+TGG 0.710635 1_2:+33192609 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATATGATTTACTATTTT+AGG - chr1_2:33192993-33193012 Msa0067890:intron 10.0%
!!! TTGTGTAATTAAATTTTTTA+TGG - chr1_2:33193108-33193127 Msa0067890:intron 10.0%
!!! ATAATCTTTTTTATTGTAAT+AGG - chr1_2:33195394-33195413 Msa0067890:intron 10.0%
!! ATATTTAATATTATTGATCA+TGG - chr1_2:33197191-33197210 Msa0067890:intron 10.0%
!!! TTTAATCGATTTAGATTTTT+TGG - chr1_2:33192585-33192604 Msa0067890:three_prime_UTR 15.0%
!!! TTTATTTTTCACTTCATTTT+AGG - chr1_2:33192737-33192756 Msa0067890:intron 15.0%
!!! ACTATTTTTTTCTTTGATTT+TGG - chr1_2:33192957-33192976 Msa0067890:intron 15.0%
!! ACTTCAGTTAAATTAAAAAT+AGG + chr1_2:33193486-33193505 None:intergenic 15.0%
!! TAATTTAACTGAAGTTATTT+AGG - chr1_2:33193491-33193510 Msa0067890:intron 15.0%
!! CTTTGTTCAATTTATTTAAA+TGG - chr1_2:33193789-33193808 Msa0067890:CDS 15.0%
!! TTCAATTTATTTAAATGGTT+TGG - chr1_2:33193794-33193813 Msa0067890:CDS 15.0%
!!! GATTATTTTGTTTTTTTAGA+TGG - chr1_2:33195104-33195123 Msa0067890:intron 15.0%
!! TCAACTATTTAACATATAAA+TGG + chr1_2:33195445-33195464 None:intergenic 15.0%
!! TCATATATTAATTTCCAAAT+TGG - chr1_2:33195948-33195967 Msa0067890:intron 15.0%
!! ATATTTATACGAAAATGAAA+GGG + chr1_2:33196330-33196349 None:intergenic 15.0%
!! TATATTTATACGAAAATGAA+AGG + chr1_2:33196331-33196350 None:intergenic 15.0%
!!! ATGGTCTTTTTTATATTTTT+AGG - chr1_2:33197210-33197229 Msa0067890:intron 15.0%
!! TGATATTATTTACATGAATA+AGG + chr1_2:33197425-33197444 None:intergenic 15.0%
!!! TGAAATGCATATTATTATTT+TGG - chr1_2:33197762-33197781 Msa0067890:intron 15.0%
!!! AAATGGTATTTTCAAATTCA+AGG + chr1_2:33192646-33192665 None:intergenic 20.0%
!! TTGAATTTGAAAATACCATT+TGG - chr1_2:33192645-33192664 Msa0067890:CDS 20.0%
!! AAAATAAAACTTGGAAAGAT+AGG + chr1_2:33192725-33192744 None:intergenic 20.0%
!! ATGAAGTGAAAAATAAAACT+TGG + chr1_2:33192734-33192753 None:intergenic 20.0%
!!! GTTTTGTATTTGATTTTTGT+AGG - chr1_2:33193026-33193045 Msa0067890:intron 20.0%
!!! TAGTGTAACATTTTAAATTG+TGG - chr1_2:33193605-33193624 Msa0067890:intron 20.0%
!!! AATTTATTTAAATGGTTTGG+TGG - chr1_2:33193797-33193816 Msa0067890:CDS 20.0%
!! TCAATTCATTAAAACTATCA+AGG + chr1_2:33193963-33193982 None:intergenic 20.0%
!!! TGATAGTTTTAATGAATTGA+AGG - chr1_2:33193963-33193982 Msa0067890:intron 20.0%
!!! AATAAGTTGCTCTAAAATTT+TGG + chr1_2:33194168-33194187 None:intergenic 20.0%
!! AACCTATCTAATACTTTATT+TGG - chr1_2:33194234-33194253 Msa0067890:intron 20.0%
!!! ATCCAAATAAAGTATTAGAT+AGG + chr1_2:33194239-33194258 None:intergenic 20.0%
!!! GTATATTTCTATTTACTGAA+TGG - chr1_2:33194438-33194457 Msa0067890:intron 20.0%
!!! GCAACTTTATGTTTTTTTAT+AGG - chr1_2:33194464-33194483 Msa0067890:intron 20.0%
!! GAAAAGATCAATGTTTATAT+TGG - chr1_2:33194890-33194909 Msa0067890:CDS 20.0%
!!! TTAATGTTGTTGGATTATTT+TGG - chr1_2:33195040-33195059 Msa0067890:intron 20.0%
!!! TAATGTTGTTGGATTATTTT+GGG - chr1_2:33195041-33195060 Msa0067890:intron 20.0%
!! TTGTAGTTTATCTAAATTAG+AGG - chr1_2:33195339-33195358 Msa0067890:intron 20.0%
!! CAGGAAGAATTATAATAAAA+TGG + chr1_2:33195505-33195524 None:intergenic 20.0%
!!! CATTTTATTATAATTCTTCC+TGG - chr1_2:33195503-33195522 Msa0067890:intron 20.0%
!! AATTTCCAAATTGGTTAATT+TGG - chr1_2:33195957-33195976 Msa0067890:intron 20.0%
!! TATAACCAAATTAACCAATT+TGG + chr1_2:33195965-33195984 None:intergenic 20.0%
!! TAGGTCAAATTTGAAAAATT+AGG + chr1_2:33196787-33196806 None:intergenic 20.0%
!!! TTTTATATATTGCCTTCATA+TGG - chr1_2:33197454-33197473 Msa0067890:CDS 20.0%
!!! GATTTTGTTAAACTAAGAAT+GGG + chr1_2:33197492-33197511 None:intergenic 20.0%
!!! AGATTTTGTTAAACTAAGAA+TGG + chr1_2:33197493-33197512 None:intergenic 20.0%
!! TTAGTTTAACAAAATCTAAC+TGG - chr1_2:33197496-33197515 Msa0067890:intron 20.0%
! TTTGTTCTTCTAATTGATTG+AGG - chr1_2:33192551-33192570 Msa0067890:three_prime_UTR 25.0%
!!! TAGATTTTTTGGTATGTCTT+TGG - chr1_2:33192596-33192615 Msa0067890:exon 25.0%
! ATATGGGTAAGTTTCAATTT+GGG - chr1_2:33192678-33192697 Msa0067890:intron 25.0%
! AGCAATAGAGAAAAATCAAA+AGG + chr1_2:33192838-33192857 None:intergenic 25.0%
!!! TTGTATTTGATTTTTGTAGG+TGG - chr1_2:33193029-33193048 Msa0067890:intron 25.0%
!! TTATGATGATGATCTTAAAC+AGG - chr1_2:33193226-33193245 Msa0067890:intron 25.0%
!! AAATCAATGTTTTCTCAAGA+GGG - chr1_2:33193376-33193395 Msa0067890:intron 25.0%
! ATATTGAAACATCATGTATC+TGG - chr1_2:33193576-33193595 Msa0067890:intron 25.0%
! AAAGAAAATGAATAGAAAGG+AGG + chr1_2:33193707-33193726 None:intergenic 25.0%
! AGGAAAGAAAATGAATAGAA+AGG + chr1_2:33193710-33193729 None:intergenic 25.0%
!! TTTCTATTCATTTTCTTTCC+TGG - chr1_2:33193709-33193728 Msa0067890:intron 25.0%
! TTGAACAAAGTTATTGTATC+AGG + chr1_2:33193779-33193798 None:intergenic 25.0%
! GAATTGAAGGATATAGATTA+TGG - chr1_2:33193976-33193995 Msa0067890:CDS 25.0%
!!! AATTTTGTTTTTGAACTGCA+TGG - chr1_2:33194288-33194307 Msa0067890:intron 25.0%
!!! TTTTCATCATTGGCTTAATA+GGG + chr1_2:33194875-33194894 None:intergenic 25.0%
!! AACATTGATCTTTTCATCAT+TGG + chr1_2:33194885-33194904 None:intergenic 25.0%
! TTGATGCTAATTAATGTTGT+TGG - chr1_2:33195030-33195049 Msa0067890:intron 25.0%
! AATTTAACAGTTGCTTATTC+TGG - chr1_2:33195188-33195207 Msa0067890:intron 25.0%
! ATTTAACAGTTGCTTATTCT+GGG - chr1_2:33195189-33195208 Msa0067890:intron 25.0%
!!! GTTGACTTTTGTATTTTATC+AGG - chr1_2:33195573-33195592 Msa0067890:intron 25.0%
! AACGATTATATACCTTTGTA+GGG + chr1_2:33195656-33195675 None:intergenic 25.0%
! TGGATCATTGTTTCATAATT+TGG - chr1_2:33195903-33195922 Msa0067890:intron 25.0%
! TTACGAGTTACTATTGTTTA+TGG - chr1_2:33196060-33196079 Msa0067890:intron 25.0%
! AGTTACTATTGTTTATGGAA+TGG - chr1_2:33196065-33196084 Msa0067890:intron 25.0%
!!! AAGAGAAAAAGGTTTTGATT+TGG - chr1_2:33196280-33196299 Msa0067890:intron 25.0%
! TTCGTATAAATATAGAGCAT+TGG - chr1_2:33196337-33196356 Msa0067890:intron 25.0%
! ATGTAGTTAGATAAGTTTCT+AGG - chr1_2:33196395-33196414 Msa0067890:intron 25.0%
! CTAACTACATAACTTTACAT+GGG - chr1_2:33196525-33196544 Msa0067890:intron 25.0%
! AGTATCAATGCTACATATAT+AGG + chr1_2:33196806-33196825 None:intergenic 25.0%
! TCTATCACAAAATCAAAGAA+GGG - chr1_2:33197119-33197138 Msa0067890:CDS 25.0%
! TGTTTGGAAAAAAAAGTTGA+TGG - chr1_2:33197265-33197284 Msa0067890:intron 25.0%
! CTTTGATATATTTCAAGACA+TGG - chr1_2:33197532-33197551 Msa0067890:intron 25.0%
! AGATTTATGCATCCATTATA+AGG + chr1_2:33197587-33197606 None:intergenic 25.0%
! TGAACTAATGTTATGTTCAA+AGG - chr1_2:33198075-33198094 Msa0067890:CDS 25.0%
!!! TGTTCAAAGGTATTTAGAAA+AGG - chr1_2:33198088-33198107 Msa0067890:CDS 25.0%
!! TAAGGTTAGTTAAACAATAG+AGG + chr1_2:33198130-33198149 None:intergenic 25.0%
! TCAAAACAAAGTATAGTCAA+TGG + chr1_2:33198181-33198200 None:intergenic 25.0%
TCACACGGTAAACAAAAAAA+CGG - chr1_2:33192329-33192348 Msa0067890:three_prime_UTR 30.0%
! TGATTGATGATAGAGACAAA+CGG + chr1_2:33192478-33192497 None:intergenic 30.0%
TTGTCTCTATCATCAATCAA+AGG - chr1_2:33192479-33192498 Msa0067890:three_prime_UTR 30.0%
ACAAAATCGCACCAAAAAAT+GGG + chr1_2:33192536-33192555 None:intergenic 30.0%
AACAAAATCGCACCAAAAAA+TGG + chr1_2:33192537-33192556 None:intergenic 30.0%
TTTGAAAATACCATTTGGCA+TGG - chr1_2:33192650-33192669 Msa0067890:CDS 30.0%
GATATGGGTAAGTTTCAATT+TGG - chr1_2:33192677-33192696 Msa0067890:intron 30.0%
AGATCATTAGGATCATCTTA+GGG - chr1_2:33192914-33192933 Msa0067890:intron 30.0%
! AGGCTCTGATATTCAAAATT+TGG + chr1_2:33193145-33193164 None:intergenic 30.0%
TTGATGAATGTGAAACTAGA+TGG - chr1_2:33193270-33193289 Msa0067890:intron 30.0%
! CAAATCAATGTTTTCTCAAG+AGG - chr1_2:33193375-33193394 Msa0067890:intron 30.0%
AGCAATTCTCTGTTATATCA+CGG + chr1_2:33193643-33193662 None:intergenic 30.0%
AAAAGTTAATGTATCAGAGC+TGG + chr1_2:33193755-33193774 None:intergenic 30.0%
! TAAACAACTTCCTGATGTTT+TGG + chr1_2:33193838-33193857 None:intergenic 30.0%
AAACATCAGGAAGTTGTTTA+AGG - chr1_2:33193838-33193857 Msa0067890:CDS 30.0%
!! CAAATCTCTGTTAGTTTGTA+AGG - chr1_2:33193999-33194018 Msa0067890:CDS 30.0%
! AAATTCTACTGTTGGTGAAT+AGG + chr1_2:33194128-33194147 None:intergenic 30.0%
! TCACCAACAGTAGAATTTTA+TGG - chr1_2:33194130-33194149 Msa0067890:intron 30.0%
ATGCCATAAAATTCTACTGT+TGG + chr1_2:33194136-33194155 None:intergenic 30.0%
AAGTGTATAGTAACAAAGAG+CGG - chr1_2:33194415-33194434 Msa0067890:intron 30.0%
! AGTAAGTTATGTTAGTTTCC+CGG - chr1_2:33194495-33194514 Msa0067890:intron 30.0%
TAATCTCAAATGCATTATGC+AGG - chr1_2:33194634-33194653 Msa0067890:intron 30.0%
AAATGCATTATGCAGGTATA+CGG - chr1_2:33194641-33194660 Msa0067890:intron 30.0%
! TGACATATTGCTTCTAAAGA+AGG + chr1_2:33194755-33194774 None:intergenic 30.0%
!!! CTTTTCATCATTGGCTTAAT+AGG + chr1_2:33194876-33194895 None:intergenic 30.0%
!! TGTTTGTGCGCTTTTAAAAA+AGG - chr1_2:33194953-33194972 Msa0067890:intron 30.0%
! TGATTTTCTGATTCTGATTC+TGG - chr1_2:33195077-33195096 Msa0067890:intron 30.0%
! GATTTTCTGATTCTGATTCT+GGG - chr1_2:33195078-33195097 Msa0067890:intron 30.0%
ATGGACAATGAATTTGAGAA+TGG - chr1_2:33195123-33195142 Msa0067890:intron 30.0%
AGTGGTTCAATTAATTCACA+TGG - chr1_2:33195296-33195315 Msa0067890:intron 30.0%
GAACGATTATATACCTTTGT+AGG + chr1_2:33195657-33195676 None:intergenic 30.0%
TTTCAGAACTTACCTCTTAA+GGG + chr1_2:33195822-33195841 None:intergenic 30.0%
GATAGCTTATGAAAGTTACT+TGG + chr1_2:33195930-33195949 None:intergenic 30.0%
TTGCTTCTACAGACAAAAAT+GGG + chr1_2:33196147-33196166 None:intergenic 30.0%
ATTGCTTCTACAGACAAAAA+TGG + chr1_2:33196148-33196167 None:intergenic 30.0%
ATATTCGAGTATAAACCAGT+TGG - chr1_2:33196221-33196240 Msa0067890:intron 30.0%
!! TAGAGCATTGGAAAAATTTG+AGG - chr1_2:33196349-33196368 Msa0067890:intron 30.0%
ATTTGAGGAGAAGCAAATAA+AGG - chr1_2:33196364-33196383 Msa0067890:intron 30.0%
!! TATTAGAGCTTTGTTAACCA+TGG - chr1_2:33196499-33196518 Msa0067890:intron 30.0%
GCTAACTACATAACTTTACA+TGG - chr1_2:33196524-33196543 Msa0067890:intron 30.0%
TAGAATTCAGAAGAAGAATC+AGG - chr1_2:33196586-33196605 Msa0067890:intron 30.0%
CACGTGTTAGTAAATACAAT+TGG - chr1_2:33196991-33197010 Msa0067890:intron 30.0%
GTCTATCACAAAATCAAAGA+AGG - chr1_2:33197118-33197137 Msa0067890:CDS 30.0%
ATGTTCTTGATACCATATGA+AGG + chr1_2:33197469-33197488 None:intergenic 30.0%
AATTCTACTTATAAGGCCTT+AGG + chr1_2:33197635-33197654 None:intergenic 30.0%
GCTGCATAATTCTACTTATA+AGG + chr1_2:33197642-33197661 None:intergenic 30.0%
CTATATGCTCATGCTATATA+AGG + chr1_2:33197717-33197736 None:intergenic 30.0%
AATGATACATGATCGAACTA+TGG + chr1_2:33197789-33197808 None:intergenic 30.0%
!!! TCATCTTGTTTTGTAGATGA+TGG - chr1_2:33197827-33197846 Msa0067890:intron 30.0%
!!! ATACACCTGTGTTTTAATGT+TGG - chr1_2:33197943-33197962 Msa0067890:intron 30.0%
TGATACCAACATTAAAACAC+AGG + chr1_2:33197951-33197970 None:intergenic 30.0%
TAAACAATAGAGGACATCAA+TGG + chr1_2:33198120-33198139 None:intergenic 30.0%
! TTGGTGAGTATTGTGAAATA+AGG + chr1_2:33198148-33198167 None:intergenic 30.0%
ACAAAGTATAGTCAATGGAA+AGG + chr1_2:33198176-33198195 None:intergenic 30.0%
!!! GTTTTTTTGTTTACCGTGTG+AGG + chr1_2:33192330-33192349 None:intergenic 35.0%
CACACGGTAAACAAAAAAAC+GGG - chr1_2:33192330-33192349 Msa0067890:three_prime_UTR 35.0%
! AAGAAGAAAATGGTGGAGAT+TGG + chr1_2:33192417-33192436 None:intergenic 35.0%
ACTGAGAAAGAAGAAAATGG+TGG + chr1_2:33192424-33192443 None:intergenic 35.0%
CACACTGAGAAAGAAGAAAA+TGG + chr1_2:33192427-33192446 None:intergenic 35.0%
CTCTATCATCAATCAAAGGT+TGG - chr1_2:33192483-33192502 Msa0067890:three_prime_UTR 35.0%
ATTTGGCATGGATCAGATAT+GGG - chr1_2:33192662-33192681 Msa0067890:intron 35.0%
! GTTTCAATTTGGGATGTTAC+TGG - chr1_2:33192688-33192707 Msa0067890:intron 35.0%
CAAAAGTCCTACAGATCATT+AGG - chr1_2:33192902-33192921 Msa0067890:intron 35.0%
AGATGATCCTAATGATCTGT+AGG + chr1_2:33192912-33192931 None:intergenic 35.0%
CAGATCATTAGGATCATCTT+AGG - chr1_2:33192913-33192932 Msa0067890:intron 35.0%
GATCATTAGGATCATCTTAG+GGG - chr1_2:33192915-33192934 Msa0067890:intron 35.0%
!!! TAGGTTCTCACTTTTTACCA+AGG + chr1_2:33193467-33193486 None:intergenic 35.0%
CTTACCAACAAAATTGTGCA+CGG - chr1_2:33193519-33193538 Msa0067890:intron 35.0%
! TAAACCGTGCACAATTTTGT+TGG + chr1_2:33193526-33193545 None:intergenic 35.0%
! GTGCACGGTTTAGTTTATAT+TGG - chr1_2:33193534-33193553 Msa0067890:intron 35.0%
CATTACATGATGCAATCTAC+AGG - chr1_2:33193664-33193683 Msa0067890:intron 35.0%
! CTATTCATTTTCTTTCCTGG+AGG - chr1_2:33193712-33193731 Msa0067890:intron 35.0%
ATCAGGAAGTTGTTTAAGGA+TGG - chr1_2:33193842-33193861 Msa0067890:CDS 35.0%
TTAAGGATGGCTTCATTATC+AGG - chr1_2:33193855-33193874 Msa0067890:intron 35.0%
!! ATCTCTGTTAGTTTGTAAGG+TGG - chr1_2:33194002-33194021 Msa0067890:CDS 35.0%
TTAGTTGTGCTGAGTATTCT+AGG - chr1_2:33194076-33194095 Msa0067890:CDS 35.0%
! TCAACCCTATTTGAAGTGTA+TGG - chr1_2:33194189-33194208 Msa0067890:intron 35.0%
CACTCCATACACTTCAAATA+GGG + chr1_2:33194196-33194215 None:intergenic 35.0%
! TCTTATTTACAGATGTGTCG+TGG - chr1_2:33194345-33194364 Msa0067890:intron 35.0%
AGTGTATAGTAACAAAGAGC+GGG - chr1_2:33194416-33194435 Msa0067890:intron 35.0%
! GAGTTTAAAGTCAGAGATCT+CGG + chr1_2:33194528-33194547 None:intergenic 35.0%
! GACGTTGTATTTGACTTCAT+TGG - chr1_2:33194687-33194706 Msa0067890:intron 35.0%
!! AGCACTGATAGAAATAGTGA+AGG + chr1_2:33194826-33194845 None:intergenic 35.0%
GGTAAGAGTGAAAAGAAATG+AGG + chr1_2:33194854-33194873 None:intergenic 35.0%
ACAAGCAACTTCTGATATGA+TGG - chr1_2:33195146-33195165 Msa0067890:intron 35.0%
TGTGATTTCAGTCCTTTATC+TGG - chr1_2:33195229-33195248 Msa0067890:CDS 35.0%
ATTTCAGTCCTTTATCTGGA+AGG - chr1_2:33195233-33195252 Msa0067890:CDS 35.0%
AGTAAACACCTTCCAGATAA+AGG + chr1_2:33195244-33195263 None:intergenic 35.0%
TACTATGAGAGAGAGAGAAA+TGG - chr1_2:33195260-33195279 Msa0067890:CDS 35.0%
AATGGAAGGACAATAGAAAG+TGG - chr1_2:33195278-33195297 Msa0067890:intron 35.0%
TCTTCCTGGATCTTCATTTA+TGG - chr1_2:33195517-33195536 Msa0067890:intron 35.0%
! CTTGTCATTTGTCCAATGAT+CGG - chr1_2:33195686-33195705 Msa0067890:intron 35.0%
ATTTGTCCAATGATCGGAAA+TGG - chr1_2:33195692-33195711 Msa0067890:intron 35.0%
GATATTCCATTTCCGATCAT+TGG + chr1_2:33195701-33195720 None:intergenic 35.0%
ATTGCACTTGCAGTTCATAT+TGG - chr1_2:33195748-33195767 Msa0067890:intron 35.0%
GTTTCAGAACTTACCTCTTA+AGG + chr1_2:33195823-33195842 None:intergenic 35.0%
ACAATGATCCATCAGTAAGT+AGG + chr1_2:33195894-33195913 None:intergenic 35.0%
CTATTGTTTATGGAATGGCT+AGG - chr1_2:33196070-33196089 Msa0067890:intron 35.0%
CTAACTACGAGGATTATTCA+GGG - chr1_2:33196101-33196120 Msa0067890:CDS 35.0%
TAACTACGAGGATTATTCAG+GGG - chr1_2:33196102-33196121 Msa0067890:CDS 35.0%
TGCTTCTACAGACAAAAATG+GGG + chr1_2:33196146-33196165 None:intergenic 35.0%
TGCAATATGGGAAGAGAAAA+AGG - chr1_2:33196269-33196288 Msa0067890:intron 35.0%
! ACCTGATTGTTTAGAGTTGA+AGG - chr1_2:33196430-33196449 Msa0067890:intron 35.0%
! ATTGTTTAGAGTTGAAGGCT+TGG - chr1_2:33196435-33196454 Msa0067890:intron 35.0%
ACTACATAACTTTACATGGG+AGG - chr1_2:33196528-33196547 Msa0067890:intron 35.0%
ACTTTACATGGGAGGATTAA+AGG - chr1_2:33196536-33196555 Msa0067890:intron 35.0%
GGATGCAGTTATAACAACAA+TGG - chr1_2:33196618-33196637 Msa0067890:intron 35.0%
!! TGGTATTCAGTTGATGATGT+TGG - chr1_2:33196638-33196657 Msa0067890:intron 35.0%
!! AGTTGATGATGTTGGTTCTT+TGG - chr1_2:33196646-33196665 Msa0067890:intron 35.0%
GAACAGATTAAACTGTCAGA+AGG - chr1_2:33197052-33197071 Msa0067890:CDS 35.0%
CTGACTAAGATGAACATGTT+TGG - chr1_2:33197249-33197268 Msa0067890:intron 35.0%
!!! AAAGTTGATGGTTTTGCACA+TGG - chr1_2:33197277-33197296 Msa0067890:CDS 35.0%
TTCACCTTTGCTTAGTTTCA+AGG - chr1_2:33197346-33197365 Msa0067890:intron 35.0%
GAAATGCATAACAGAAACTG+TGG - chr1_2:33197554-33197573 Msa0067890:intron 35.0%
ATGAGCATATAGATCAGTAG+TGG - chr1_2:33197725-33197744 Msa0067890:intron 35.0%
!!! CTTGTTTTGTAGATGATGGT+AGG - chr1_2:33197831-33197850 Msa0067890:intron 35.0%
AACCAACTGTTGCAGATATT+AGG + chr1_2:33197857-33197876 None:intergenic 35.0%
AAAAAACCACGCATGTGTAT+TGG - chr1_2:33197884-33197903 Msa0067890:intron 35.0%
!!! TGCTTGCATGTCCCATTTTT+TGG - chr1_2:33192522-33192541 Msa0067890:three_prime_UTR 40.0%
CATATCTGATCCATGCCAAA+TGG + chr1_2:33192663-33192682 None:intergenic 40.0%
CATTTGGCATGGATCAGATA+TGG - chr1_2:33192661-33192680 Msa0067890:intron 40.0%
TTTAATCGCAGCTCGATCAT+AGG + chr1_2:33193165-33193184 None:intergenic 40.0%
ATCGAGCTGCGATTAAATTC+AGG - chr1_2:33193168-33193187 Msa0067890:intron 40.0%
TCGAGCTGCGATTAAATTCA+GGG - chr1_2:33193169-33193188 Msa0067890:intron 40.0%
TGATGCAATCTACAGGATGA+TGG - chr1_2:33193671-33193690 Msa0067890:intron 40.0%
! TTTTCTTTCCTGGAGGATGA+TGG - chr1_2:33193719-33193738 Msa0067890:intron 40.0%
AATGTATCAGAGCTGGAACA+GGG + chr1_2:33193748-33193767 None:intergenic 40.0%
TAATGTATCAGAGCTGGAAC+AGG + chr1_2:33193749-33193768 None:intergenic 40.0%
GATAGGGAGTGAATCTTAGT+TGG + chr1_2:33193884-33193903 None:intergenic 40.0%
AAGGGACGTCATTCTAGATA+TGG - chr1_2:33193935-33193954 Msa0067890:intron 40.0%
GCACTCCATACACTTCAAAT+AGG + chr1_2:33194197-33194216 None:intergenic 40.0%
! AGGTTTGATCTGGCATTTTG+TGG - chr1_2:33194726-33194745 Msa0067890:CDS 40.0%
TAGCAAACTGTGAAGTGATG+AGG - chr1_2:33194777-33194796 Msa0067890:intron 40.0%
TCATTCGTGGAGCAAATTAC+AGG + chr1_2:33194987-33195006 None:intergenic 40.0%
ATGAGAGAGAGAGAAATGGA+AGG - chr1_2:33195264-33195283 Msa0067890:intron 40.0%
GTTGCCATAAATGAAGATCC+AGG + chr1_2:33195524-33195543 None:intergenic 40.0%
! AAATGTTTCTGCAAGCTGTG+CGG + chr1_2:33195619-33195638 None:intergenic 40.0%
TGTTGCAAAATGCCCTACAA+AGG - chr1_2:33195641-33195660 Msa0067890:intron 40.0%
ACTTGCAGTTCATATTGGCA+TGG - chr1_2:33195753-33195772 Msa0067890:intron 40.0%
GCAAAATCAGGCTCTACTAT+TGG - chr1_2:33195785-33195804 Msa0067890:CDS 40.0%
!! GCATTGATTCTTCCCTTAAG+AGG - chr1_2:33195807-33195826 Msa0067890:CDS 40.0%
GCTAACTACGAGGATTATTC+AGG - chr1_2:33196100-33196119 Msa0067890:CDS 40.0%
CAGGGGATAAGAATTATCAG+AGG - chr1_2:33196119-33196138 Msa0067890:CDS 40.0%
TCGAGTATAAACCAGTTGGT+TGG - chr1_2:33196225-33196244 Msa0067890:intron 40.0%
TCTTGATACATCCAACCAAC+TGG + chr1_2:33196239-33196258 None:intergenic 40.0%
!! AGAGAGAGCATTGTGCAATA+TGG - chr1_2:33196256-33196275 Msa0067890:intron 40.0%
!! GAGAGAGCATTGTGCAATAT+GGG - chr1_2:33196257-33196276 Msa0067890:intron 40.0%
GCCTTCAACTCTAAACAATC+AGG + chr1_2:33196434-33196453 None:intergenic 40.0%
!! TAGAGCTTTGTTAACCATGG+AGG - chr1_2:33196502-33196521 Msa0067890:intron 40.0%
! AGTTATGTAGTTAGCCTCCA+TGG + chr1_2:33196519-33196538 None:intergenic 40.0%
GAGGATTAAAGGTAAGTGCT+TGG - chr1_2:33196547-33196566 Msa0067890:intron 40.0%
!! AGAAGAATCAGGTTGACTGT+TGG - chr1_2:33196597-33196616 Msa0067890:intron 40.0%
ACTCTTGAGGTAAGCATCTT+CGG - chr1_2:33196736-33196755 Msa0067890:intron 40.0%
AGATACTTGCCTGATTCTAC+CGG - chr1_2:33197083-33197102 Msa0067890:CDS 40.0%
GATAGACTTGCAGTATTTGC+CGG + chr1_2:33197105-33197124 None:intergenic 40.0%
CATGCCTTGAAACTAAGCAA+AGG + chr1_2:33197353-33197372 None:intergenic 40.0%
GTAATACAGCTCTTTGCCTA+AGG - chr1_2:33197616-33197635 Msa0067890:intron 40.0%
GTTTCAGCAATAATGCCAAC+AGG - chr1_2:33198010-33198029 Msa0067890:intron 40.0%
AGCAATAATGCCAACAGGAT+TGG - chr1_2:33198015-33198034 Msa0067890:intron 40.0%
AATGATTGTGCCAATCCTGT+TGG + chr1_2:33198028-33198047 None:intergenic 40.0%
AGTCAATGGAAAGGAGTCAT+TGG + chr1_2:33198167-33198186 None:intergenic 40.0%
GTGGAGATTGGTGTGTTCAA+CGG + chr1_2:33192405-33192424 None:intergenic 45.0%
CATTAGGATCATCTTAGGGG+TGG - chr1_2:33192918-33192937 Msa0067890:intron 45.0%
CGAGCTGCGATTAAATTCAG+GGG - chr1_2:33193170-33193189 Msa0067890:intron 45.0%
GCGATTAAATTCAGGGGAGT+TGG - chr1_2:33193176-33193195 Msa0067890:intron 45.0%
GGAGTAACACTGCACAAATG+TGG - chr1_2:33193414-33193433 Msa0067890:CDS 45.0%
ACTGCACAAATGTGGCAGTT+GGG - chr1_2:33193422-33193441 Msa0067890:CDS 45.0%
CTCTGTTATATCACGGACCA+TGG + chr1_2:33193636-33193655 None:intergenic 45.0%
TCTTTGCAGGCCAAAACATC+AGG - chr1_2:33193825-33193844 Msa0067890:CDS 45.0%
! CTTCATCCCAGCTACTTTAG+CGG + chr1_2:33194398-33194417 None:intergenic 45.0%
AGAGATCTCGGATTTGATCC+GGG + chr1_2:33194516-33194535 None:intergenic 45.0%
CAGAGATCTCGGATTTGATC+CGG + chr1_2:33194517-33194536 None:intergenic 45.0%
TTAGAAGTCCCACACTACGA+AGG + chr1_2:33194583-33194602 None:intergenic 45.0%
TTATGCAGGTATACGGCAGA+TGG - chr1_2:33194648-33194667 Msa0067890:intron 45.0%
CAGAGAAGCTAACTCATTCG+TGG + chr1_2:33195000-33195019 None:intergenic 45.0%
TGATGGCAAGCAGTCAACAA+AGG - chr1_2:33195163-33195182 Msa0067890:intron 45.0%
TGGCAGCAAAGTGCAAAATC+AGG - chr1_2:33195773-33195792 Msa0067890:intron 45.0%
TGCAGAAGCCTACTTACTGA+TGG - chr1_2:33195883-33195902 Msa0067890:intron 45.0%
CTGAAAGCAGGAACGAAAAG+AGG + chr1_2:33196021-33196040 None:intergenic 45.0%
TTCCTGCTTTCAGCTATGAG+AGG - chr1_2:33196028-33196047 Msa0067890:intron 45.0%
TCCTGCTTTCAGCTATGAGA+GGG - chr1_2:33196029-33196048 Msa0067890:intron 45.0%
CAGTATTTGCCGGTAGAATC+AGG + chr1_2:33197095-33197114 None:intergenic 45.0%
TGTGGCGCGAATCCTTATAA+TGG - chr1_2:33197572-33197591 Msa0067890:intron 45.0%
GGCCTAATATCTGCAACAGT+TGG - chr1_2:33197852-33197871 Msa0067890:intron 45.0%
AAACCACGCATGTGTATTGG+TGG - chr1_2:33197887-33197906 Msa0067890:intron 45.0%
AGGATCATCTTAGGGGTGGA+CGG - chr1_2:33192922-33192941 Msa0067890:intron 50.0%
ACACAGCTCATGTTGCTGCT+AGG - chr1_2:33193057-33193076 Msa0067890:intron 50.0%
AGAGGGAGTTCGAAGTACAG+AGG - chr1_2:33193393-33193412 Msa0067890:CDS 50.0%
CACTGCACAAATGTGGCAGT+TGG - chr1_2:33193421-33193440 Msa0067890:CDS 50.0%
GCTCGAATGGGTCAATTCCT+TGG - chr1_2:33193447-33193466 Msa0067890:intron 50.0%
TTTAAATTGTGGCCGCGCCA+TGG - chr1_2:33193616-33193635 Msa0067890:intron 50.0%
TTATATCACGGACCATGGCG+CGG + chr1_2:33193631-33193650 None:intergenic 50.0%
! TTTGGTGGCTCTCTCTTTGC+AGG - chr1_2:33193812-33193831 Msa0067890:CDS 50.0%
TTCACTCCCTATCCTGTGCT+AGG - chr1_2:33193891-33193910 Msa0067890:intron 50.0%
ATGAAGGAGGCCAAGAGGAA+GGG - chr1_2:33193917-33193936 Msa0067890:intron 50.0%
AGAATGACGTCCCTTCCTCT+TGG + chr1_2:33193930-33193949 None:intergenic 50.0%
TTACAGATGTGTCGTGGTCG+AGG - chr1_2:33194351-33194370 Msa0067890:intron 50.0%
TAGCAGCCGCTAAAGTAGCT+GGG - chr1_2:33194389-33194408 Msa0067890:intron 50.0%
GGTGAGCTAAGGGACATTGA+AGG + chr1_2:33194550-33194569 None:intergenic 50.0%
! CTTCATTGGTGATCCTCCTG+AGG - chr1_2:33194701-33194720 Msa0067890:CDS 50.0%
AGATCAAACCTCTCCTCAGG+AGG + chr1_2:33194717-33194736 None:intergenic 50.0%
TCCTGAGGAGAGGTTTGATC+TGG - chr1_2:33194716-33194735 Msa0067890:CDS 50.0%
TCCCTCTCATAGCTGAAAGC+AGG + chr1_2:33196033-33196052 None:intergenic 50.0%
AGGTTGTGCAGCTAACTACG+AGG - chr1_2:33196090-33196109 Msa0067890:CDS 50.0%
CAGATGCTAGAGAATGAGCC+TGG - chr1_2:33196680-33196699 Msa0067890:intron 50.0%
AACTCTAGCAGGCTCTTTCC+AGG + chr1_2:33196701-33196720 None:intergenic 50.0%
GTCTGTCGCTACTACTCTTG+AGG - chr1_2:33196723-33196742 Msa0067890:intron 50.0%
GTCGACATGATTCTCACACG+TGG - chr1_2:33196855-33196874 Msa0067890:intron 50.0%
CATCCACCAATACACATGCG+TGG + chr1_2:33197893-33197912 None:intergenic 50.0%
CCGTGTGAGGAGAAGAGAAC+CGG + chr1_2:33192317-33192336 None:intergenic 55.0%
CCGGTTCTCTTCTCCTCACA+CGG - chr1_2:33192314-33192333 Msa0067890:three_prime_UTR 55.0%
GATTGGTGTGTTCAACGGCG+AGG + chr1_2:33192400-33192419 None:intergenic 55.0%
TGGCAGTTGGGAAGCTCGAA+TGG - chr1_2:33193434-33193453 Msa0067890:CDS 55.0%
GGCAGTTGGGAAGCTCGAAT+GGG - chr1_2:33193435-33193454 Msa0067890:CDS 55.0%
CAGGGTAACCATCATCCTCC+AGG + chr1_2:33193730-33193749 None:intergenic 55.0%
CATGCGCCTAGCACAGGATA+GGG + chr1_2:33193900-33193919 None:intergenic 55.0%
TCATGCGCCTAGCACAGGAT+AGG + chr1_2:33193901-33193920 None:intergenic 55.0%
ATCCTGTGCTAGGCGCATGA+AGG - chr1_2:33193901-33193920 Msa0067890:intron 55.0%
CATGAAGGAGGCCAAGAGGA+AGG - chr1_2:33193916-33193935 Msa0067890:intron 55.0%
CTAGCAGCCGCTAAAGTAGC+TGG - chr1_2:33194388-33194407 Msa0067890:intron 55.0%
!! CAGCTCGGTTGGTGAGCTAA+GGG + chr1_2:33194560-33194579 None:intergenic 55.0%
! TTGGTGATCCTCCTGAGGAG+AGG - chr1_2:33194706-33194725 Msa0067890:CDS 55.0%
GCCAGATCAAACCTCTCCTC+AGG + chr1_2:33194720-33194739 None:intergenic 55.0%
GCGACAGACGAAACTCTAGC+AGG + chr1_2:33196712-33196731 None:intergenic 55.0%
GTGTTCAACGGCGAGGTCGA+CGG + chr1_2:33192393-33192412 None:intergenic 60.0%
CTCCTTCATGCGCCTAGCAC+AGG + chr1_2:33193906-33193925 None:intergenic 60.0%
CTGTGCTAGGCGCATGAAGG+AGG - chr1_2:33193904-33193923 Msa0067890:intron 60.0%
GTGGTCGAGGACAGCGCTAT+AGG - chr1_2:33194364-33194383 Msa0067890:intron 60.0%
!! GCAGCTCGGTTGGTGAGCTA+AGG + chr1_2:33194561-33194580 None:intergenic 60.0%
CACTACGAAGGCAGCTCGGT+TGG + chr1_2:33194571-33194590 None:intergenic 60.0%
ACCGAGCTGCCTTCGTAGTG+TGG - chr1_2:33194571-33194590 Msa0067890:intron 60.0%
CCCACACTACGAAGGCAGCT+CGG + chr1_2:33194575-33194594 None:intergenic 60.0%
CCGAGCTGCCTTCGTAGTGT+GGG - chr1_2:33194572-33194591 Msa0067890:intron 60.0%
TTCAACGGCGAGGTCGACGG+AGG + chr1_2:33192390-33192409 None:intergenic 65.0%
GGCGCATGAAGGAGGCCAAG+AGG - chr1_2:33193912-33193931 Msa0067890:intron 65.0%
! GACGGCAAGGTGGCGGTGTG+AGG + chr1_2:33192366-33192385 None:intergenic 70.0%
CGGAGGAGACGGCAAGGTGG+CGG + chr1_2:33192373-33192392 None:intergenic 70.0%
CGACGGAGGAGACGGCAAGG+TGG + chr1_2:33192376-33192395 None:intergenic 70.0%
GGTCGACGGAGGAGACGGCA+AGG + chr1_2:33192379-33192398 None:intergenic 70.0%
GGCGAGGTCGACGGAGGAGA+CGG + chr1_2:33192384-33192403 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 33192308 33198213 33192308 ID=Msa0067890;Name=Msa0067890
chr1_2 mRNA 33192308 33198213 33192308 ID=Msa0067890-mRNA-1;Parent=Msa0067890;Name=Msa0067890-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.46|0.57|1|0.92|0.85|14|300|431
chr1_2 exon 33192308 33192678 33192308 ID=Msa0067890-mRNA-1:exon:10931;Parent=Msa0067890-mRNA-1
chr1_2 exon 33193381 33193463 33193381 ID=Msa0067890-mRNA-1:exon:10930;Parent=Msa0067890-mRNA-1
chr1_2 exon 33193777 33193873 33193777 ID=Msa0067890-mRNA-1:exon:10929;Parent=Msa0067890-mRNA-1
chr1_2 exon 33193964 33194120 33193964 ID=Msa0067890-mRNA-1:exon:10928;Parent=Msa0067890-mRNA-1
chr1_2 exon 33194591 33194633 33194591 ID=Msa0067890-mRNA-1:exon:10927;Parent=Msa0067890-mRNA-1
chr1_2 exon 33194693 33194760 33194693 ID=Msa0067890-mRNA-1:exon:10926;Parent=Msa0067890-mRNA-1
chr1_2 exon 33194859 33194926 33194859 ID=Msa0067890-mRNA-1:exon:10925;Parent=Msa0067890-mRNA-1
chr1_2 exon 33195204 33195281 33195204 ID=Msa0067890-mRNA-1:exon:10924;Parent=Msa0067890-mRNA-1
chr1_2 exon 33195774 33195865 33195774 ID=Msa0067890-mRNA-1:exon:10923;Parent=Msa0067890-mRNA-1
chr1_2 exon 33196084 33196164 33196084 ID=Msa0067890-mRNA-1:exon:10922;Parent=Msa0067890-mRNA-1
chr1_2 exon 33197046 33197191 33197046 ID=Msa0067890-mRNA-1:exon:10921;Parent=Msa0067890-mRNA-1
chr1_2 exon 33197274 33197361 33197274 ID=Msa0067890-mRNA-1:exon:10920;Parent=Msa0067890-mRNA-1
chr1_2 exon 33197443 33197473 33197443 ID=Msa0067890-mRNA-1:exon:10919;Parent=Msa0067890-mRNA-1
chr1_2 exon 33198021 33198213 33198021 ID=Msa0067890-mRNA-1:exon:10918;Parent=Msa0067890-mRNA-1
chr1_2 CDS 33198021 33198213 33198021 ID=Msa0067890-mRNA-1:cds;Parent=Msa0067890-mRNA-1
chr1_2 CDS 33197443 33197473 33197443 ID=Msa0067890-mRNA-1:cds;Parent=Msa0067890-mRNA-1
chr1_2 CDS 33197274 33197361 33197274 ID=Msa0067890-mRNA-1:cds;Parent=Msa0067890-mRNA-1
chr1_2 CDS 33197046 33197191 33197046 ID=Msa0067890-mRNA-1:cds;Parent=Msa0067890-mRNA-1
chr1_2 CDS 33196084 33196164 33196084 ID=Msa0067890-mRNA-1:cds;Parent=Msa0067890-mRNA-1
chr1_2 CDS 33195774 33195865 33195774 ID=Msa0067890-mRNA-1:cds;Parent=Msa0067890-mRNA-1
chr1_2 CDS 33195204 33195281 33195204 ID=Msa0067890-mRNA-1:cds;Parent=Msa0067890-mRNA-1
chr1_2 CDS 33194859 33194926 33194859 ID=Msa0067890-mRNA-1:cds;Parent=Msa0067890-mRNA-1
chr1_2 CDS 33194693 33194760 33194693 ID=Msa0067890-mRNA-1:cds;Parent=Msa0067890-mRNA-1
chr1_2 CDS 33194591 33194633 33194591 ID=Msa0067890-mRNA-1:cds;Parent=Msa0067890-mRNA-1
chr1_2 CDS 33193964 33194120 33193964 ID=Msa0067890-mRNA-1:cds;Parent=Msa0067890-mRNA-1
chr1_2 CDS 33193777 33193873 33193777 ID=Msa0067890-mRNA-1:cds;Parent=Msa0067890-mRNA-1
chr1_2 CDS 33193381 33193463 33193381 ID=Msa0067890-mRNA-1:cds;Parent=Msa0067890-mRNA-1
chr1_2 CDS 33192608 33192678 33192608 ID=Msa0067890-mRNA-1:cds;Parent=Msa0067890-mRNA-1
chr1_2 three_prime_UTR 33192308 33192607 33192308 ID=Msa0067890-mRNA-1:three_prime_utr;Parent=Msa0067890-mRNA-1
Gene Sequence

>Msa0067890

TTCAGTCCGGTTCTCTTCTCCTCACACGGTAAACAAAAAAACGGGTTCTCTTCTTCCTCACACCGCCACCTTGCCGTCTCCTCCGTCGACCTCGCCGTTGAACACACCAATCTCCACCATTTTCTTCTTTCTCAGTGTGCGACGTCTTCTTCGTTTTGCTTCTTCTTCCGTTTGTCTCTATCATCAATCAAAGGTGGATTTAACACAGCTCATGTTGCTGCTAGAGCCTATGATCGAGCTGCGATTAAATTCAGGGGAGTTGGTGCTTACATAAATTTCAATTTGAATGATTATGATGATGATCTTAAACAGACGAAGAATTTATCGAAAGATGAGTCTTTGCAAACACTTCGTCTACAAATCAATGTTTTCTCAAGAGGGAGTTCGAAGTACAGAGGAGTAACACTGCACAAATGTGGCAGTTGGGAAGCTCGAATGGGTCAATTCCTTGGTAAAAAATGTGTCGTGGTCGAGGACAGCGCTATAGGTCTAGCAGCCGCTAAAGTAGCTGGGATGAAGTGTATAGTAACAAAGAGCGGGTATACGGCAGATGGAGATTTCTTAAATGCAGACGTTGTATTTGACTTCATTGGTGATCCTCCTGAGGAGAGGTTTGATCTGGCATTTTGTGTCCTTTATCTGGAAGGTGTTTACTATGAGAGAGAGAGAAATGGAAGGACAATAGAAAGTGGTTCAATTAATTCACATGGTGTGACATCAAACACAGATGCCGCACAGCTTGCAGAAACATTTGTTGTTGCAAAATGCCCTACAAAGTTCATATTGGCATGGCAGCAAAGTGCAAAATCAGGCTCTACTATTGGCATTGATTCTTCCCTTAAGAGAAGCCTACTTACTGATGGATCATTGTTTCATAATTTGGACCAATTAGATAAGTTTCTAGGATTTAAGCTTTCACCTGATTGTTTAGAGTTGAAGGCTTGGTTGTATATTGCATTAGATGATTATGATAGTGCTATAAGAGATATTAGAGCTTTGTTAACCATGGAGGCTAACTACATAACTTTACATGGGAGGATTAAAGTTGATGATGTTGGTTCTTTGGCTATTATACATCAGATGCTAGAGAATGAGCCTGGAAAGAGCCTGCTAGAGTTTCGTCTGTCGCTACTACTCTTGAGATTAAACTGTCAGAAGGCTGCAAAGAGATACTTGCCTGATTCTACCGGCAAATACTGCAAGTCTATCACAAAATCAAAGAAGGATGATGGTAGGCCTAATATCTGCAACAGTTGGTTGTGTTTGAAAAAACCACGCATGTGTATTGGTGGATGA

Protein sequence

>Msa0067890

FSPVLFSSHGKQKNGFSSSSHRHLAVSSVDLAVEHTNLHHFLLSQCATSSSFCFFFRLSLSSIKGGFNTAHVAARAYDRAAIKFRGVGAYINFNLNDYDDDLKQTKNLSKDESLQTLRLQINVFSRGSSKYRGVTLHKCGSWEARMGQFLGKKCVVVEDSAIGLAAAKVAGMKCIVTKSGYTADGDFLNADVVFDFIGDPPEERFDLAFCVLYLEGVYYERERNGRTIESGSINSHGVTSNTDAAQLAETFVVAKCPTKFILAWQQSAKSGSTIGIDSSLKRSLLTDGSLFHNLDQLDKFLGFKLSPDCLELKAWLYIALDDYDSAIRDIRALLTMEANYITLHGRIKVDDVGSLAIIHQMLENEPGKSLLEFRLSLLLLRLNCQKAAKRYLPDSTGKYCKSITKSKKDDGRPNICNSWLCLKKPRMCIGG*