AlfalfaGEDB | Msa0052630

M. sativa cultivar zhongmu-4 / Msa0052630

KEGG: K09284
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052630	RHN69572.1	91.026	78	7	0	76	153	47	124	2.07e-39	150

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052630	sp\|O65020\|ETO1_ARATH	48.819	127	35	1	345	441	561	687	6.33e-29	124

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052630	A0A396IVJ2	91.026	78	7	0	76	153	47	124	9.89e-40	150

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001890	Msa0052630	0.850334	1.816275e-60	-8.615850e-47
Msa0052630	Msa0067890	0.960876	4.696159e-119	-8.615850e-47
Msa0052630	Msa0164370	0.801129	1.041673e-48	-8.615850e-47
Msa0052630	Msa0337510	0.817384	3.391359e-52	-8.615850e-47
Msa0052630	Msa0364990	0.800801	1.215199e-48	-8.615850e-47
Msa0052630	Msa0414020	0.818205	2.213034e-52	-8.615850e-47
Msa0052630	Msa0662450	0.866018	3.873220e-65	-8.615850e-47
Msa0052630	Msa0791030	0.812845	3.453228e-51	-8.615850e-47
Msa0052630	Msa0987930	0.903258	4.175196e-79	-8.615850e-47
Msa0052630	Msa1253400	0.803790	2.946022e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052630	MtrunA17_Chr3g0126151	91.026	78	7	0	76	153	47	124	1.90e-43	150
Msa0052630	MtrunA17_Chr3g0105811	72.441	127	5	1	345	441	537	663	3.61e-37	145
Msa0052630	MtrunA17_Chr4g0030191	85.714	91	13	0	65	155	158	248	2.68e-36	139
Msa0052630	MtrunA17_Chr4g0005681	47.143	140	44	1	332	441	548	687	4.57e-33	133
Msa0052630	MtrunA17_Chr7g0243131	48.062	129	37	1	343	441	300	428	2.69e-31	127
Msa0052630	MtrunA17_Chr7g0263581	73.626	91	24	0	65	155	166	256	3.71e-29	119
Msa0052630	MtrunA17_Chr4g0053181	73.626	91	24	0	65	155	203	293	1.80e-28	118
Msa0052630	MtrunA17_Chr5g0401891	73.626	91	24	0	65	155	179	269	2.57e-28	117
Msa0052630	MtrunA17_Chr2g0325911	69.388	98	30	0	65	162	161	258	2.73e-28	117
Msa0052630	MtrunA17_Chr3g0116461	87.719	57	7	0	184	240	251	307	4.97e-22	96.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0052630	AT2G28550.5	72.632	95	26	0	65	159	14	108	4.42e-30	119
Msa0052630	AT3G51770.2	48.819	127	35	1	345	441	569	695	6.41e-30	124
Msa0052630	AT3G51770.1	48.819	127	35	1	345	441	561	687	6.68e-30	124
Msa0052630	AT4G36920.1	75.824	91	22	0	65	155	158	248	7.01e-30	121
Msa0052630	AT4G36920.2	75.824	91	22	0	65	155	158	248	7.01e-30	121
Msa0052630	AT2G28550.2	76.404	89	21	0	65	153	180	268	8.05e-30	117
Msa0052630	AT2G28550.6	76.404	89	21	0	65	153	180	268	8.05e-30	117
Msa0052630	AT2G28550.4	74.725	91	23	0	65	155	180	270	1.55e-29	119
Msa0052630	AT2G28550.1	72.632	95	26	0	65	159	180	274	6.52e-29	119
Msa0052630	AT2G28550.3	74.725	91	23	0	65	155	180	270	1.04e-28	118

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Find 121 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCAGGAAGTTGTTTA+AGG	0.196812	1_2:-6927460	Msa0052630:CDS
AAACCACGCATGTGTATTGG+TGG	0.565338	1_2:-6923411	Msa0052630:CDS
AAATGCATTATGCAGGTATA+CGG	0.405222	1_2:-6926657	Msa0052630:intron
AAATGTTTCTGCAAGCTGTG+CGG	0.691119	1_2:+6925682	None:intergenic
AACCAACTGTTGCAGATATT+AGG	0.442398	1_2:+6923444	None:intergenic
AACGATTATATACCTTTGTA+GGG	0.515993	1_2:+6925645	None:intergenic
AACTCTAGCAGGCTCTTTCC+AGG	0.361101	1_2:+6924600	None:intergenic
AAGAAGAAAATGGTGGAGAT+TGG	0.471464	1_2:+6928885	None:intergenic
AAGTGTATAGTAACAAAGAG+CGG	0.628437	1_2:-6926883	Msa0052630:CDS
AATGATTGTGCCAATCCTGT+TGG	0.632692	1_2:+6923273	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCACACGGTAAACAAAAAAA+CGG	-	chr1_2:6923128-6923147	Msa0052630:three_prime_UTR	30.0%
TTGTCTCTATCATCAATCAA+AGG	-	chr1_2:6923278-6923297	Msa0052630:three_prime_UTR	30.0%
ACAAAATCGCACCAAAAAAT+GGG	+	chr1_2:6923335-6923354	None:intergenic	30.0%
AACAAAATCGCACCAAAAAA+TGG	+	chr1_2:6923336-6923355	None:intergenic	30.0%
TTTGAAAATACCATTTGGCA+TGG	-	chr1_2:6923449-6923468	Msa0052630:CDS	30.0%
GATATGGGTAAGTTTCAATT+TGG	-	chr1_2:6923476-6923495	Msa0052630:intron	30.0%
CAGCAATAGAGAAAATCAAA+AGG	+	chr1_2:6923639-6923658	None:intergenic	30.0%
AGATCATTAGGATCATCTTA+GGG	-	chr1_2:6923714-6923733	Msa0052630:intron	30.0%
TTGATGAATGTGAAACTAGA+TGG	-	chr1_2:6924070-6924089	Msa0052630:intron	30.0%
AGCAATTCTCTGTTATATCA+CGG	+	chr1_2:6924443-6924462	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	6923107	6929013	6923107	ID=Msa0052630;Name=Msa0052630
chr1_2	mRNA	6923107	6929013	6923107	ID=Msa0052630-mRNA-1;Parent=Msa0052630;Name=Msa0052630-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0\|0.38\|0.47\|1\|0.77\|0.84\|19\|300\|480
chr1_2	exon	6923107	6923477	6923107	ID=Msa0052630-mRNA-1:exon:2368;Parent=Msa0052630-mRNA-1
chr1_2	exon	6924180	6924262	6924180	ID=Msa0052630-mRNA-1:exon:2367;Parent=Msa0052630-mRNA-1
chr1_2	exon	6924576	6924672	6924576	ID=Msa0052630-mRNA-1:exon:2366;Parent=Msa0052630-mRNA-1
chr1_2	exon	6924763	6924919	6924763	ID=Msa0052630-mRNA-1:exon:2365;Parent=Msa0052630-mRNA-1
chr1_2	exon	6925390	6925432	6925390	ID=Msa0052630-mRNA-1:exon:2364;Parent=Msa0052630-mRNA-1
chr1_2	exon	6925492	6925559	6925492	ID=Msa0052630-mRNA-1:exon:2363;Parent=Msa0052630-mRNA-1
chr1_2	exon	6925658	6925725	6925658	ID=Msa0052630-mRNA-1:exon:2362;Parent=Msa0052630-mRNA-1
chr1_2	exon	6926003	6926080	6926003	ID=Msa0052630-mRNA-1:exon:2361;Parent=Msa0052630-mRNA-1
chr1_2	exon	6926146	6926197	6926146	ID=Msa0052630-mRNA-1:exon:2360;Parent=Msa0052630-mRNA-1
chr1_2	exon	6926367	6926373	6926367	ID=Msa0052630-mRNA-1:exon:2359;Parent=Msa0052630-mRNA-1
chr1_2	exon	6926593	6926664	6926593	ID=Msa0052630-mRNA-1:exon:2358;Parent=Msa0052630-mRNA-1
chr1_2	exon	6926883	6926963	6926883	ID=Msa0052630-mRNA-1:exon:2357;Parent=Msa0052630-mRNA-1
chr1_2	exon	6927379	6927407	6927379	ID=Msa0052630-mRNA-1:exon:2356;Parent=Msa0052630-mRNA-1
chr1_2	exon	6927415	6927486	6927415	ID=Msa0052630-mRNA-1:exon:2355;Parent=Msa0052630-mRNA-1
chr1_2	exon	6927628	6927634	6927628	ID=Msa0052630-mRNA-1:exon:2354;Parent=Msa0052630-mRNA-1
chr1_2	exon	6927845	6927990	6927845	ID=Msa0052630-mRNA-1:exon:2353;Parent=Msa0052630-mRNA-1
chr1_2	exon	6928073	6928160	6928073	ID=Msa0052630-mRNA-1:exon:2352;Parent=Msa0052630-mRNA-1
chr1_2	exon	6928242	6928272	6928242	ID=Msa0052630-mRNA-1:exon:2351;Parent=Msa0052630-mRNA-1
chr1_2	exon	6928821	6929013	6928821	ID=Msa0052630-mRNA-1:exon:2350;Parent=Msa0052630-mRNA-1
chr1_2	CDS	6928821	6929013	6928821	ID=Msa0052630-mRNA-1:cds;Parent=Msa0052630-mRNA-1
chr1_2	CDS	6928242	6928272	6928242	ID=Msa0052630-mRNA-1:cds;Parent=Msa0052630-mRNA-1
chr1_2	CDS	6928073	6928160	6928073	ID=Msa0052630-mRNA-1:cds;Parent=Msa0052630-mRNA-1
chr1_2	CDS	6927845	6927990	6927845	ID=Msa0052630-mRNA-1:cds;Parent=Msa0052630-mRNA-1
chr1_2	CDS	6927628	6927634	6927628	ID=Msa0052630-mRNA-1:cds;Parent=Msa0052630-mRNA-1
chr1_2	CDS	6927415	6927486	6927415	ID=Msa0052630-mRNA-1:cds;Parent=Msa0052630-mRNA-1
chr1_2	CDS	6927379	6927407	6927379	ID=Msa0052630-mRNA-1:cds;Parent=Msa0052630-mRNA-1
chr1_2	CDS	6926883	6926963	6926883	ID=Msa0052630-mRNA-1:cds;Parent=Msa0052630-mRNA-1
chr1_2	CDS	6926593	6926664	6926593	ID=Msa0052630-mRNA-1:cds;Parent=Msa0052630-mRNA-1
chr1_2	CDS	6926367	6926373	6926367	ID=Msa0052630-mRNA-1:cds;Parent=Msa0052630-mRNA-1
chr1_2	CDS	6926146	6926197	6926146	ID=Msa0052630-mRNA-1:cds;Parent=Msa0052630-mRNA-1
chr1_2	CDS	6926003	6926080	6926003	ID=Msa0052630-mRNA-1:cds;Parent=Msa0052630-mRNA-1
chr1_2	CDS	6925658	6925725	6925658	ID=Msa0052630-mRNA-1:cds;Parent=Msa0052630-mRNA-1
chr1_2	CDS	6925492	6925559	6925492	ID=Msa0052630-mRNA-1:cds;Parent=Msa0052630-mRNA-1
chr1_2	CDS	6925390	6925432	6925390	ID=Msa0052630-mRNA-1:cds;Parent=Msa0052630-mRNA-1
chr1_2	CDS	6924763	6924919	6924763	ID=Msa0052630-mRNA-1:cds;Parent=Msa0052630-mRNA-1
chr1_2	CDS	6924576	6924672	6924576	ID=Msa0052630-mRNA-1:cds;Parent=Msa0052630-mRNA-1
chr1_2	CDS	6924180	6924262	6924180	ID=Msa0052630-mRNA-1:cds;Parent=Msa0052630-mRNA-1
chr1_2	CDS	6923407	6923477	6923407	ID=Msa0052630-mRNA-1:cds;Parent=Msa0052630-mRNA-1
chr1_2	three_prime_UTR	6923107	6923406	6923107	ID=Msa0052630-mRNA-1:three_prime_utr;Parent=Msa0052630-mRNA-1

Gene Sequence

>Msa0052630

TTCAGTCCGGTTCTCTTCTCCTCACACGGTAAACAAAAAAACGGGTTCTCTTCTTCCTCACACCGCCACCTTGCCGTCTCCTCCGTCGACCTCGCCGTTGAACACACCAATCTCCACCATTTTCTTCTTTCTCAGTGTGCGACGTCTTCTTCGTTTTGCTTCTTCTTCCGTTTGTCTCTATCATCAATCAAAGGTGGATTTAACACAGCTCATGTTGCTGCTAGAGCCTATGATCGAGCTGCGATTAAATTCAGGGGAGTTGGTGCTTACATAAATTTCAATTTGAATGATTATGATGATGATCTTAAACAGACGAAGAATTTATCGAAAGATGAGTCTTTGCAAACACTTCGTCTACAAATCAATGTTTTCTCAAGAGGGAGTTCGAAGTACAGAGGAGTAACACTGCACAAATGTGGCAGTTGGGAAGCTCGAATGGGTCAATTCCTTGGTAAAAAGATGATGGCCAAAACATCAGGAAGTTGTTTAAGGATGGCTTCATTATCAGGAAGCCAACTAAGATTCACTCCCTATCCTGCGCATGAAGGAGGCCAAGAGGAAGGGACATGTGTCGTGGTCGAGGACAGCGCTATAGGTCTAGCAGCCGCTAAAGTAGCTGGGATGAAGTGTATAGTAACAAAGAGCGGGTATACGGCAGATGGAGATTTCTTAAATGCAGACGTTGTATTTGACTTCATTGGTGATCCTCCTGAGGAGAGAAATTTTATGGACAATGAATTTGAGAATGGACAAGCAACTTCTGATATGATGGCAAGCATCCTTTATCTGGAAGGTGTTTACTATGAGAGAGAGAGAAATGGAAGGACAATAGAAAGTGGTTCAATTAATTCACATGGTGTGACATCAAACACAGATGCCGCACAGCTTGCAGAAACATTTGTTGTTGCAAAATGCCCTACAAAGTTCATATTGGCATGGCAGCAAAGTGCAAAATCAGGCTCTACTATTGGCATTGATTCTTCCCTTAAGAGAAGCCTACTTACTGATGGATCATTGTTTCATAATTTGGACCAATTAGATAAGTTTCTAGGATTTAAGCTTTCACCTGATTGTTTAGAGTTGAAGGCTTGGTTGTATATTGCATTAGATGATTATGATAGTGCTATAAGAGATATTAGAGCTTTGTTAACCATGGAGGCTAACTACATAACTTTACATGGGAGGATTAAAGTTGATGATGTTGGTTCTTTGGCTATTATACATCAGATGCTAGAGAATGAGCCTGGAAAGAGCCTGCTAGAGTTTCGTCTGTCGCTACTACTCTTGAGATTAAACTGTCAGAAGGCTGCAAAGAGATACTTGCCTGATTCTACCGGCAAATACTGCAAGTCTATCACAAAATCAAAGAAGGATGATGGTAGGCCTAATATCTGCAACAGTTGGTTGTGTTTGAAAAAACCACGCATGTGTATTGGTGGATGA

Protein sequence

>Msa0052630

FSPVLFSSHGKQKNGFSSSSHRHLAVSSVDLAVEHTNLHHFLLSQCATSSSFCFFFRLSLSSIKGGFNTAHVAARAYDRAAIKFRGVGAYINFNLNDYDDDLKQTKNLSKDESLQTLRLQINVFSRGSSKYRGVTLHKCGSWEARMGQFLGKKMMAKTSGSCLRMASLSGSQLRFTPYPAHEGGQEEGTCVVVEDSAIGLAAAKVAGMKCIVTKSGYTADGDFLNADVVFDFIGDPPEERNFMDNEFENGQATSDMMASILYLEGVYYERERNGRTIESGSINSHGVTSNTDAAQLAETFVVAKCPTKFILAWQQSAKSGSTIGIDSSLKRSLLTDGSLFHNLDQLDKFLGFKLSPDCLELKAWLYIALDDYDSAIRDIRALLTMEANYITLHGRIKVDDVGSLAIIHQMLENEPGKSLLEFRLSLLLLRLNCQKAAKRYLPDSTGKYCKSITKSKKDDGRPNICNSWLCLKKPRMCIGG*