AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1447680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1447680 MtrunA17_Chr5g0402211 80.000 40 8 0 44 83 398 437 1.58e-14 66.6
Msa1447680 MtrunA17_Chr8g0375081 57.500 40 17 0 44 83 403 442 4.84e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 164 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACGAGTTACTATTGTTTA+TGG 0.127348 tig0031924:+26534 Msa1447680:CDS
AATTTAACAGTTGCTTATTC+TGG 0.149039 tig0031924:+25665 Msa1447680:five_prime_UTR
AAACATCAGGAAGTTGTTTA+AGG 0.196812 tig0031924:+24286 Msa1447680:five_prime_UTR
ACTTTACATGGGAGGATTAA+AGG 0.234605 tig0031924:+27010 Msa1447680:three_prime_UTR
TGCAATATGGGAAGAGAAAA+AGG 0.243934 tig0031924:+26743 Msa1447680:three_prime_UTR
TAAACAACTTCCTGATGTTT+TGG 0.257525 tig0031924:-24283 Msa1447680:intergenic
ATGTAGTTAGATAAGTTTCT+AGG 0.272462 tig0031924:+26869 Msa1447680:three_prime_UTR
GCAAAATCAGGCTCTATTAT+TGG 0.282676 tig0031924:+26260 Msa1447680:CDS
CATTTGGCATGGATCAGATA+TGG 0.299955 tig0031924:+23108 Msa1447680:five_prime_UTR
GCTAACTACGAGGATTATTC+AGG 0.301139 tig0031924:+26574 Msa1447680:exon
TGTGATTTCAGTCCTTTATC+TGG 0.308734 tig0031924:+25706 Msa1447680:five_prime_UTR
GTTTCAGAACTTACCTCTTA+AGG 0.317681 tig0031924:-26295 Msa1447680:intergenic
ACCTGATTGTTTAGAGTTGA+AGG 0.318328 tig0031924:+26904 Msa1447680:three_prime_UTR
AGAGAGAGCATTGTGCAATA+TGG 0.318597 tig0031924:+26730 Msa1447680:three_prime_UTR
TTAAGGATGGCTTCATTATC+AGG 0.321072 tig0031924:+24303 Msa1447680:five_prime_UTR
GAACGATTATATACCTTTGT+AGG 0.358428 tig0031924:-26129 Msa1447680:intergenic
CAGTATTTGCCGGTAGAATC+AGG 0.358742 tig0031924:-27566 Msa1447680:intergenic
AACTCTAGCAGGCTCTTTCC+AGG 0.361101 tig0031924:-27172 Msa1447680:intergenic
TTTCAGAACTTACCTCTTAA+GGG 0.361709 tig0031924:-26294 Msa1447680:intergenic
ATTGCACTTGCAGTTCATAT+TGG 0.363079 tig0031924:+26223 Msa1447680:intron
CAAAAGTCCTACAGATCATT+AGG 0.366008 tig0031924:+23349 Msa1447680:five_prime_UTR
ATTTAACAGTTGCTTATTCT+GGG 0.375684 tig0031924:+25666 Msa1447680:five_prime_UTR
ATCGAGCTGCGATTAAATTC+AGG 0.379752 tig0031924:+23616 Msa1447680:five_prime_UTR
AGTAAACACCTTCCAGATAA+AGG 0.389171 tig0031924:-25718 Msa1447680:intergenic
CTGACTAAGATGAACATGTT+TGG 0.399933 tig0031924:+27723 Msa1447680:three_prime_UTR
TTGAATTTGAAAATACCATT+TGG 0.400895 tig0031924:+23092 Msa1447680:five_prime_UTR
AAATGCATTATGCAGGTATA+CGG 0.405222 tig0031924:+25118 Msa1447680:intron
GCATTGATTCTTCCCTTAAG+AGG 0.406835 tig0031924:+26282 Msa1447680:CDS
GATAGACTTGCAGTATTTGC+CGG 0.410071 tig0031924:-27576 Msa1447680:intergenic
GACGTTGTATTTGACTTCAT+TGG 0.414112 tig0031924:+25164 Msa1447680:five_prime_UTR
TTAGATGGACAATGAATTTG+AGG 0.417084 tig0031924:+25596 Msa1447680:intron
TTCTTCCTTCTTCTTCAGTC+CGG 0.420638 tig0031924:+22743 None:intergenic
ATTTGAGGAGAAGCAAATAA+AGG 0.421213 tig0031924:+26838 Msa1447680:three_prime_UTR
TTGGTGAGTATTGTGAAATA+AGG 0.427114 tig0031924:-28632 Msa1447680:intergenic
CAGATCATTAGGATCATCTC+AGG 0.432627 tig0031924:+23360 Msa1447680:five_prime_UTR
AGCAATAATGCCAACAGGAT+TGG 0.436526 tig0031924:+28502 Msa1447680:three_prime_UTR
TTATGATGATGATCTTAAAC+AGG 0.440099 tig0031924:+23674 Msa1447680:five_prime_UTR
GAGAGAGCATTGTGCAATAT+GGG 0.440525 tig0031924:+26731 Msa1447680:three_prime_UTR
TTTAATCGCAGCTCGATCAT+AGG 0.441826 tig0031924:-23610 Msa1447680:intergenic
AACCAACTGTTGCAGATATT+AGG 0.442398 tig0031924:-28340 Msa1447680:intergenic
GATAGGGAGTGAATCTTAGT+TGG 0.449443 tig0031924:-24329 Msa1447680:intergenic
AAGAAGAAAACGGTGGAGAT+TGG 0.453039 tig0031924:-22861 Msa1447680:intergenic
CTAGCAGCCGCTAAAGTAGC+TGG 0.453585 tig0031924:+24865 Msa1447680:five_prime_UTR
AAGGGACGTCATTCTAGATA+TGG 0.453943 tig0031924:+24383 Msa1447680:five_prime_UTR
TGGCAGCAAAGTGCAAAATC+AGG 0.459814 tig0031924:+26248 Msa1447680:CDS
CTCCTTCATGCGCCTAGCAC+AGG 0.460882 tig0031924:-24351 Msa1447680:intergenic
TTTACTATGAGAGAGAGAAA+TGG 0.461147 tig0031924:+25735 Msa1447680:exon
TCTTGATACATCCAACCAAC+TGG 0.462684 tig0031924:-26710 Msa1447680:intergenic
TGTTCAAAGGTATTTAGAAA+AGG 0.464068 tig0031924:+28575 Msa1447680:three_prime_UTR
GTCTATCACAAAATCAAAGA+AGG 0.465270 tig0031924:+27592 Msa1447680:three_prime_UTR
TCTTTGTAGGCCAAAACATC+AGG 0.468870 tig0031924:+24273 Msa1447680:intron
GCCTTCAACTCTAAACAATC+AGG 0.470343 tig0031924:-26905 Msa1447680:intergenic
TCCTGAGGAGAGGTTTGATC+TGG 0.473131 tig0031924:+25193 Msa1447680:five_prime_UTR
GTGGTCGAGGACAGCGCTAT+AGG 0.473850 tig0031924:+24841 Msa1447680:five_prime_UTR
TTCGTATAAATATAGAGCAT+TGG 0.477418 tig0031924:+26811 Msa1447680:three_prime_UTR
GTTTCAGCAATAATGCCAAC+AGG 0.481394 tig0031924:+28497 Msa1447680:three_prime_UTR
TAAGGTTAGTTAAACAATAG+AGG 0.481505 tig0031924:-28614 Msa1447680:intergenic
TGAACTAATGTTATGTTCAA+AGG 0.485312 tig0031924:+28562 Msa1447680:three_prime_UTR
TGGCAGTTGGGAAGCTCGAA+TGG 0.485503 tig0031924:+23882 Msa1447680:five_prime_UTR
ATTTCAGTCCTTTATCTGGA+AGG 0.490219 tig0031924:+25710 Msa1447680:five_prime_UTR
TTTGAAAATACCATTTGGCA+TGG 0.493311 tig0031924:+23097 Msa1447680:five_prime_UTR
CATGAAGGAGGCCAAGAGGA+AGG 0.493620 tig0031924:+24364 Msa1447680:five_prime_UTR
ATCAGGAAGTTGTTTAAGGA+TGG 0.495341 tig0031924:+24290 Msa1447680:five_prime_UTR
AGTCAATGGAAAGGAGTCAT+TGG 0.496054 tig0031924:-28651 Msa1447680:intergenic
GCTAACTACATAACTTTACA+TGG 0.496572 tig0031924:+26998 Msa1447680:three_prime_UTR
GCGATTAAATTCAGGGGAGT+TGG 0.497882 tig0031924:+23624 Msa1447680:five_prime_UTR
TGACATATTGCTTCTAAAGA+AGG 0.499768 tig0031924:-25229 Msa1447680:intergenic
TATATTTATACGAAAATGAA+AGG 0.501735 tig0031924:-26802 Msa1447680:intergenic
AGTTACTATTGTTTATGGAA+TGG 0.503180 tig0031924:+26539 Msa1447680:CDS
CTTCATCCCAGCTACTTTAG+CGG 0.503426 tig0031924:-24872 Msa1447680:intergenic
GCCAGATCAAACCTCTCCTC+AGG 0.506138 tig0031924:-25194 Msa1447680:intergenic
CAGATGCTAGAGAATGAGCC+TGG 0.507226 tig0031924:+27154 Msa1447680:intron
TCAAAACAAAGTATAGTCAA+TGG 0.507968 tig0031924:-28665 Msa1447680:intergenic
CACTGCACAAATGTGGCAGT+TGG 0.508097 tig0031924:+23869 Msa1447680:five_prime_UTR
GCTCGAATGGGTCAATTCCT+TGG 0.510521 tig0031924:+23895 Msa1447680:five_prime_UTR
ACTGCACAAATGTGGCAGTT+GGG 0.511914 tig0031924:+23870 Msa1447680:five_prime_UTR
TTTAAATTGTGGCCGCGCCA+TGG 0.512803 tig0031924:+24064 Msa1447680:five_prime_UTR
CCGTGTGAGGAGAAGAGAAC+CGG 0.514670 tig0031924:-22762 Msa1447680:intergenic
AGATACTTGCCTGATTCTAC+CGG 0.514786 tig0031924:+27557 Msa1447680:three_prime_UTR
AACGATTATATACCTTTGTA+GGG 0.515993 tig0031924:-26128 Msa1447680:intergenic
GGCGAGGTCGACGGAGGAGA+CGG 0.516043 tig0031924:-22828 Msa1447680:intergenic
ATTTGGCATGGATCAGATAT+GGG 0.516241 tig0031924:+23109 Msa1447680:five_prime_UTR
CATATCTGATCCATGCCAAA+TGG 0.516686 tig0031924:-23107 Msa1447680:intergenic
ACAAGCAACTTCTGATATGA+TGG 0.520935 tig0031924:+25623 Msa1447680:five_prime_UTR
TTACAGATGTGTCGTGGTCG+AGG 0.524433 tig0031924:+24828 Msa1447680:intron
AGTTATGTAGTTAGCCTCCA+TGG 0.526706 tig0031924:-26990 Msa1447680:intergenic
CATGCGCCTAGCACAGGATA+GGG 0.528401 tig0031924:-24345 Msa1447680:intergenic
GTGTTCAACGGCGAGGTCGA+CGG 0.530961 tig0031924:-22837 Msa1447680:intergenic
AGAATGACGTCCCTTCCTCT+TGG 0.531849 tig0031924:-24375 Msa1447680:intergenic
GCACATGGCGTTCGAGAGCA+TGG 0.532295 tig0031924:+27766 Msa1447680:three_prime_UTR
CGGAGGAGACGGCAAGGTGG+CGG 0.535976 tig0031924:-22817 Msa1447680:intergenic
TCATGCGCCTAGCACAGGAT+AGG 0.536282 tig0031924:-24346 Msa1447680:intergenic
ATTGTTTAGAGTTGAAGGCT+TGG 0.537047 tig0031924:+26909 Msa1447680:three_prime_UTR
CTATTGTTTATGGAATGGCT+AGG 0.538463 tig0031924:+26544 Msa1447680:CDS
TCGAGCTGCGATTAAATTCA+GGG 0.538997 tig0031924:+23617 Msa1447680:five_prime_UTR
GACGGCAAGGTGGCGGTGTG+AGG 0.539935 tig0031924:-22810 Msa1447680:intergenic
TCGAGTATAAACCAGTTGGT+TGG 0.543459 tig0031924:+26699 Msa1447680:three_prime_UTR
TCCTGCTTTCAGCTATGAGA+GGG 0.547312 tig0031924:+26503 Msa1447680:intron
TTCCTGCTTTCAGCTATGAG+AGG 0.550089 tig0031924:+26502 Msa1447680:intron
GTCTGTCGCTACTACTCTTG+AGG 0.550215 tig0031924:+27197 Msa1447680:three_prime_UTR
TTGGTGATCCTCCTGAGGAG+AGG 0.552332 tig0031924:+25183 Msa1447680:five_prime_UTR
ACACAGCTCATGTTGCTGCT+AGG 0.553358 tig0031924:+23504 Msa1447680:five_prime_UTR
CACACTGAGAAAGAAGAAAA+CGG 0.554412 tig0031924:-22871 Msa1447680:intergenic
TATTAGAGCTTTGTTAACCA+TGG 0.554431 tig0031924:+26973 Msa1447680:three_prime_UTR
AGATGATCCTAATGATCTGT+AGG 0.555523 tig0031924:-23356 Msa1447680:intergenic
GGCCTAATATCTGCAACAGT+TGG 0.557391 tig0031924:+28338 Msa1447680:three_prime_UTR
ATGAAGGAGGCCAAGAGGAA+GGG 0.559525 tig0031924:+24365 Msa1447680:five_prime_UTR
TAAACAATAGAGGACATCAA+TGG 0.561945 tig0031924:-28604 Msa1447680:intergenic
ATATTTATACGAAAATGAAA+GGG 0.564014 tig0031924:-26801 Msa1447680:intergenic
AAACCACGCATGTGTATTGG+TGG 0.565338 tig0031924:+28373 Msa1447680:three_prime_UTR
CCGGTTCTCTTCTCCTCACA+CGG 0.565646 tig0031924:+22762 Msa1447680:five_prime_UTR
CTAACTACGAGGATTATTCA+GGG 0.568404 tig0031924:+26575 Msa1447680:exon
TGATAGAGACAAATGGAAGA+AGG 0.570053 tig0031924:-22915 Msa1447680:intergenic
TTATGCAGGTATACGGCAGA+TGG 0.570206 tig0031924:+25125 Msa1447680:intron
ATGGACAATGAATTTGAGGA+TGG 0.570269 tig0031924:+25600 Msa1447680:five_prime_UTR
GGCAGTTGGGAAGCTCGAAT+GGG 0.571868 tig0031924:+23883 Msa1447680:five_prime_UTR
TGACGCAATCTACAAGATGA+TGG 0.578831 tig0031924:+24119 Msa1447680:five_prime_UTR
AGTGTATAGTAACAAAGAGC+TGG 0.581359 tig0031924:+24893 Msa1447680:five_prime_UTR
TTGTCTCTATCATCAATCAA+AGG 0.583253 tig0031924:+22926 Msa1447680:five_prime_UTR
TGATTGATGATAGAGACAAA+TGG 0.584709 tig0031924:-22922 Msa1447680:intergenic
CTCTGTTATATCACGGACCA+TGG 0.587310 tig0031924:-24081 Msa1447680:intergenic
GCGACAGACGAAACTCTAGC+AGG 0.588210 tig0031924:-27183 Msa1447680:intergenic
ACAAAGTATAGTCAATGGAA+AGG 0.588594 tig0031924:-28660 Msa1447680:intergenic
GTGGAGATTGGTGTGTTCAA+CGG 0.591351 tig0031924:-22849 Msa1447680:intergenic
TCTATCACAAAATCAAAGAA+GGG 0.593364 tig0031924:+27593 Msa1447680:three_prime_UTR
TTCACTCCCTATCCTGTGCT+AGG 0.595814 tig0031924:+24339 Msa1447680:five_prime_UTR
ATCCTGTGCTAGGCGCATGA+AGG 0.598410 tig0031924:+24349 Msa1447680:five_prime_UTR
AGATCATTAGGATCATCTCA+GGG 0.599057 tig0031924:+23361 Msa1447680:five_prime_UTR
TCTTATTTACAGATGTGTCG+TGG 0.600555 tig0031924:+24822 Msa1447680:intron
CTGTGCTAGGCGCATGAAGG+AGG 0.602422 tig0031924:+24352 Msa1447680:five_prime_UTR
TGTTGCAAAATGCCCTACAA+AGG 0.603887 tig0031924:+26116 Msa1447680:CDS
AATGGAAGGACAATAGAAAG+TGG 0.612556 tig0031924:+25753 Msa1447680:CDS
ACTTGCAGTTCATATTGGCA+TGG 0.614305 tig0031924:+26228 Msa1447680:intron
AGGATCATCTCAGGGGTGGA+CGG 0.614978 tig0031924:+23369 Msa1447680:five_prime_UTR
TAGCAGCCGCTAAAGTAGCT+GGG 0.615799 tig0031924:+24866 Msa1447680:five_prime_UTR
TAGAGCTTTGTTAACCATGG+AGG 0.620374 tig0031924:+26976 Msa1447680:three_prime_UTR
CTTCATTGGTGATCCTCCTG+AGG 0.623430 tig0031924:+25178 Msa1447680:five_prime_UTR
AGATCAAACCTCTCCTCAGG+AGG 0.625024 tig0031924:-25191 Msa1447680:intergenic
ACTACATAACTTTACATGGG+AGG 0.625525 tig0031924:+27002 Msa1447680:three_prime_UTR
CATTAGGATCATCTCAGGGG+TGG 0.630656 tig0031924:+23365 Msa1447680:five_prime_UTR
AGCAATTCTCTGTTATATCA+CGG 0.631225 tig0031924:-24088 Msa1447680:intergenic
AATGATTGTGCCAATCCTGT+TGG 0.632692 tig0031924:-28512 Msa1447680:intergenic
TAGCAAACTATGAAGTGATG+AGG 0.632776 tig0031924:+25254 Msa1447680:five_prime_UTR
GGTCGACGGAGGAGACGGCA+AGG 0.637294 tig0031924:-22823 Msa1447680:intergenic
GGAGTAACACTGCACAAATG+TGG 0.639362 tig0031924:+23862 Msa1447680:five_prime_UTR
AGTGGTTCAATTGATTCACA+TGG 0.642905 tig0031924:+25771 Msa1447680:CDS
GATTGGTGTGTTCAACGGCG+AGG 0.643453 tig0031924:-22844 Msa1447680:intergenic
TTCAACGGCGAGGTCGACGG+AGG 0.650561 tig0031924:-22834 Msa1447680:intergenic
GGCGCATGAAGGAGGCCAAG+AGG 0.655314 tig0031924:+24360 Msa1447680:five_prime_UTR
TGATGGCAAGCAGTCAACAA+AGG 0.657586 tig0031924:+25640 Msa1447680:five_prime_UTR
ATATTCGAGTATAAACCAGT+TGG 0.658609 tig0031924:+26695 Msa1447680:three_prime_UTR
AGAGGGAGTTCGAAGTACAG+AGG 0.669918 tig0031924:+23841 Msa1447680:five_prime_UTR
CTAACTACATAACTTTACAT+GGG 0.671104 tig0031924:+26999 Msa1447680:three_prime_UTR
CTATGAGAGAGAGAAATGGA+AGG 0.671735 tig0031924:+25739 Msa1447680:exon
CGACGGAGGAGACGGCAAGG+TGG 0.673937 tig0031924:-22820 Msa1447680:intergenic
CGAGCTGCGATTAAATTCAG+GGG 0.681626 tig0031924:+23618 Msa1447680:five_prime_UTR
TTATATCACGGACCATGGCG+CGG 0.686056 tig0031924:-24076 Msa1447680:intergenic
AAATGTTTCTGCAAGCTGTG+CGG 0.691119 tig0031924:-26091 Msa1447680:intergenic
TAACTACGAGGATTATTCAG+GGG 0.696814 tig0031924:+26576 Msa1447680:exon
CAGGGGATAAGAATTATCAG+AGG 0.706903 tig0031924:+26593 Msa1447680:three_prime_UTR
CATCCACCAATACACATGCG+TGG 0.710635 tig0031924:-28376 Msa1447680:intergenic
ACTGAGAAAGAAGAAAACGG+TGG 0.729219 tig0031924:-22868 Msa1447680:intergenic
GATCATTAGGATCATCTCAG+GGG 0.736352 tig0031924:+23362 Msa1447680:five_prime_UTR
AGGTTGTGCAGCTAACTACG+AGG 0.761300 tig0031924:+26564 Msa1447680:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATATGATTTACTATTTT+AGG + tig0031924:23440-23459 Msa1447680:intron 10.0%
!!! TTGTGTAATTAATTTTTTTA+TGG + tig0031924:23556-23575 Msa1447680:intron 10.0%
!!! ATAATCTTTTTTATTGTAAT+AGG + tig0031924:25869-25888 Msa1447680:intron 10.0%
!! ATATTTAATATTATTGATCA+TGG + tig0031924:27665-27684 Msa1447680:intron 10.0%
!!! TTTAATCGATTTAGATTTTT+TGG + tig0031924:23032-23051 Msa1447680:intron 15.0%
!!! TTTATTTTTCAGTTCATTTT+AGG + tig0031924:23185-23204 Msa1447680:intron 15.0%
!!! ACTATTTTTTTCTTTGATTT+TGG + tig0031924:23404-23423 Msa1447680:intron 15.0%
!! ACTTCAGTTAAATTAAAAAT+AGG - tig0031924:23934-23953 Msa1447680:intergenic 15.0%
!! TAATTTAACTGAAGTTATTT+AGG + tig0031924:23939-23958 Msa1447680:intron 15.0%
!! CTTTGTTCAATTTATTTAAA+TGG + tig0031924:24237-24256 Msa1447680:intron 15.0%
!! TTCAATTTATTTAAATGGTT+TGG + tig0031924:24242-24261 Msa1447680:intron 15.0%
!!! GATTATTTTGTTTTTTTAGA+TGG + tig0031924:25581-25600 Msa1447680:intron 15.0%
!! TCAACTATTTAACATATAAA+TGG - tig0031924:25920-25939 Msa1447680:intergenic 15.0%
!! TCATATATTAATTTCCAAAT+TGG + tig0031924:26422-26441 Msa1447680:intron 15.0%
!! ATATTTATACGAAAATGAAA+GGG - tig0031924:26804-26823 Msa1447680:intergenic 15.0%
!! TATATTTATACGAAAATGAA+AGG - tig0031924:26805-26824 Msa1447680:intergenic 15.0%
!! TGATATTATTTACATGAATA+AGG - tig0031924:27899-27918 Msa1447680:intergenic 15.0%
!!! TGAAATGCATATTATTATTT+TGG + tig0031924:28248-28267 Msa1447680:intron 15.0%
!!! AAATGGTATTTTCAAATTCA+AGG - tig0031924:23093-23112 Msa1447680:intergenic 20.0%
!! TTGAATTTGAAAATACCATT+TGG + tig0031924:23092-23111 Msa1447680:five_prime_UTR 20.0%
!! AAATAAAAACTTGGAAAGAT+AGG - tig0031924:23172-23191 Msa1447680:intergenic 20.0%
!! TGAACTGAAAAATAAAAACT+TGG - tig0031924:23181-23200 Msa1447680:intergenic 20.0%
!!! GTTTTGTATTTGATTTTTGT+AGG + tig0031924:23473-23492 Msa1447680:intron 20.0%
!!! TAGTGTAACATTTTAAATTG+TGG + tig0031924:24053-24072 Msa1447680:intron 20.0%
!!! AATTTATTTAAATGGTTTGG+TGG + tig0031924:24245-24264 Msa1447680:intron 20.0%
!! TCAATTCATTAAAACTATCA+AGG - tig0031924:24411-24430 Msa1447680:intergenic 20.0%
!!! TGATAGTTTTAATGAATTGA+AGG + tig0031924:24411-24430 Msa1447680:intron 20.0%
!!! AATAAGTTGCTCTAAAATTT+TGG - tig0031924:24645-24664 Msa1447680:intergenic 20.0%
!!! GTATATTTCTATTTACTGAA+TGG + tig0031924:24915-24934 Msa1447680:intron 20.0%
!!! GCAACTTTATGTTTTTTTAT+AGG + tig0031924:24941-24960 Msa1447680:intron 20.0%
!! GAAAAGATCAATGTTTATAT+TGG + tig0031924:25367-25386 Msa1447680:intron 20.0%
!!! TTAATGTTGTTGGATTATTT+TGG + tig0031924:25517-25536 Msa1447680:intron 20.0%
!!! TAATGTTGTTGGATTATTTT+GGG + tig0031924:25518-25537 Msa1447680:intron 20.0%
!! TTGTAGTTTATCTAAATTAG+AGG + tig0031924:25814-25833 Msa1447680:intron 20.0%
!! CAGGAAGAATTATAATAAAA+TGG - tig0031924:25980-25999 Msa1447680:intergenic 20.0%
!!! CATTTTATTATAATTCTTCC+TGG + tig0031924:25978-25997 Msa1447680:intron 20.0%
!! AATTTCCAAATTGGTTAATT+TGG + tig0031924:26431-26450 Msa1447680:intron 20.0%
!! TATAACCAAATTAACCAATT+TGG - tig0031924:26439-26458 Msa1447680:intergenic 20.0%
!! TAGGTCAAATTTGAAAAATT+AGG - tig0031924:27261-27280 Msa1447680:intergenic 20.0%
!!! ATGGTCTTTTTTATATTTTC+AGG + tig0031924:27684-27703 Msa1447680:intron 20.0%
!!! TTTTATATATTGCCTTCATA+TGG + tig0031924:27928-27947 Msa1447680:intron 20.0%
!!! GATTTTGTTAAACTAAGAAT+GGG - tig0031924:27966-27985 Msa1447680:intergenic 20.0%
!!! AGATTTTGTTAAACTAAGAA+TGG - tig0031924:27967-27986 Msa1447680:intergenic 20.0%
!! TTAGTTTAACAAAATCTAAC+TGG + tig0031924:27970-27989 Msa1447680:intron 20.0%
! TTTGTTCATCTAATTGATTG+AGG + tig0031924:22998-23017 Msa1447680:intron 25.0%
!!! TAGATTTTTTGGTATGTCTT+TGG + tig0031924:23043-23062 Msa1447680:intron 25.0%
! ATATGGGTAAGTTTCAATTT+GGG + tig0031924:23125-23144 Msa1447680:intron 25.0%
!!! TTGTATTTGATTTTTGTAGG+TGG + tig0031924:23476-23495 Msa1447680:intron 25.0%
!! TTATGATGATGATCTTAAAC+AGG + tig0031924:23674-23693 Msa1447680:five_prime_UTR 25.0%
!! AAATCAATGTTTTCTCAAGA+GGG + tig0031924:23824-23843 Msa1447680:five_prime_UTR 25.0%
! ATATTGAAACATCATGTATC+TGG + tig0031924:24024-24043 Msa1447680:intron 25.0%
! AAAGAAAATGAATAGAAAGG+AGG - tig0031924:24155-24174 Msa1447680:intergenic 25.0%
! AGGAAAGAAAATGAATAGAA+AGG - tig0031924:24158-24177 Msa1447680:intergenic 25.0%
!! TTTCTATTCATTTTCTTTCC+TGG + tig0031924:24157-24176 Msa1447680:intron 25.0%
! TTGAACAAAGTTATTGTATC+AGG - tig0031924:24227-24246 Msa1447680:intergenic 25.0%
! GAATTGAAGGATATAGATTA+TGG + tig0031924:24424-24443 Msa1447680:intron 25.0%
! AACCTATCTGATACTTTATT+TGG + tig0031924:24711-24730 Msa1447680:intron 25.0%
!! ATCCAAATAAAGTATCAGAT+AGG - tig0031924:24716-24735 Msa1447680:intergenic 25.0%
!!! AATTTTGTTTTTGAACTGCA+TGG + tig0031924:24765-24784 Msa1447680:intron 25.0%
!!! TTTTCATCATTGGCTTAATA+GGG - tig0031924:25352-25371 Msa1447680:intergenic 25.0%
!! AACATTGATCTTTTCATCAT+TGG - tig0031924:25362-25381 Msa1447680:intergenic 25.0%
! TTGATGCTAATTAATGTTGT+TGG + tig0031924:25507-25526 Msa1447680:intron 25.0%
! AATTTAACAGTTGCTTATTC+TGG + tig0031924:25665-25684 Msa1447680:five_prime_UTR 25.0%
! ATTTAACAGTTGCTTATTCT+GGG + tig0031924:25666-25685 Msa1447680:five_prime_UTR 25.0%
!!! GTTGACTTTTGTATTTTATC+AGG + tig0031924:26048-26067 Msa1447680:intron 25.0%
! AACGATTATATACCTTTGTA+GGG - tig0031924:26131-26150 Msa1447680:intergenic 25.0%
! TGGATCATTGTTTCATAATT+TGG + tig0031924:26378-26397 Msa1447680:intron 25.0%
! TTACGAGTTACTATTGTTTA+TGG + tig0031924:26534-26553 Msa1447680:CDS 25.0%
! AGTTACTATTGTTTATGGAA+TGG + tig0031924:26539-26558 Msa1447680:CDS 25.0%
!!! AAGAGAAAAAGGTTTTGATT+TGG + tig0031924:26754-26773 Msa1447680:three_prime_UTR 25.0%
! TTCGTATAAATATAGAGCAT+TGG + tig0031924:26811-26830 Msa1447680:three_prime_UTR 25.0%
! ATGTAGTTAGATAAGTTTCT+AGG + tig0031924:26869-26888 Msa1447680:three_prime_UTR 25.0%
! CTAACTACATAACTTTACAT+GGG + tig0031924:26999-27018 Msa1447680:three_prime_UTR 25.0%
! AGTATCAATGCTACATATAT+AGG - tig0031924:27280-27299 Msa1447680:intergenic 25.0%
! TCTATCACAAAATCAAAGAA+GGG + tig0031924:27593-27612 Msa1447680:three_prime_UTR 25.0%
! CTTTGATATATTTCAAGACA+TGG + tig0031924:28006-28025 Msa1447680:intron 25.0%
! AGATTTATGCATCCATTATA+AGG - tig0031924:28061-28080 Msa1447680:intergenic 25.0%
! ACAAGATGAAAAAATTAACG+CGG - tig0031924:28302-28321 Msa1447680:intergenic 25.0%
! TGAACTAATGTTATGTTCAA+AGG + tig0031924:28562-28581 Msa1447680:three_prime_UTR 25.0%
!!! TGTTCAAAGGTATTTAGAAA+AGG + tig0031924:28575-28594 Msa1447680:three_prime_UTR 25.0%
!! TAAGGTTAGTTAAACAATAG+AGG - tig0031924:28617-28636 Msa1447680:intergenic 25.0%
! TCAAAACAAAGTATAGTCAA+TGG - tig0031924:28668-28687 Msa1447680:intergenic 25.0%
TCACACGGTAAACAAAAAAA+CGG + tig0031924:22777-22796 Msa1447680:five_prime_UTR 30.0%
! TGATTGATGATAGAGACAAA+TGG - tig0031924:22925-22944 Msa1447680:intergenic 30.0%
TTGTCTCTATCATCAATCAA+AGG + tig0031924:22926-22945 Msa1447680:five_prime_UTR 30.0%
ACAAAATCGCACCAAAAAAT+GGG - tig0031924:22983-23002 Msa1447680:intergenic 30.0%
AACAAAATCGCACCAAAAAA+TGG - tig0031924:22984-23003 Msa1447680:intergenic 30.0%
TTTGAAAATACCATTTGGCA+TGG + tig0031924:23097-23116 Msa1447680:five_prime_UTR 30.0%
GATATGGGTAAGTTTCAATT+TGG + tig0031924:23124-23143 Msa1447680:intron 30.0%
CAGCAATAGAGAAAATCAAA+AGG - tig0031924:23286-23305 Msa1447680:intergenic 30.0%
! AGGCTCTGATATTCAAAATT+TGG - tig0031924:23593-23612 Msa1447680:intergenic 30.0%
TTGATGAATGTGAAACTAGA+TGG + tig0031924:23718-23737 Msa1447680:intron 30.0%
! CAAATCAATGTTTTCTCAAG+AGG + tig0031924:23823-23842 Msa1447680:five_prime_UTR 30.0%
AGCAATTCTCTGTTATATCA+CGG - tig0031924:24091-24110 Msa1447680:intergenic 30.0%
AAAAGTTAATGTATCAGAGC+TGG - tig0031924:24203-24222 Msa1447680:intergenic 30.0%
! TAAACAACTTCCTGATGTTT+TGG - tig0031924:24286-24305 Msa1447680:intergenic 30.0%
AAACATCAGGAAGTTGTTTA+AGG + tig0031924:24286-24305 Msa1447680:five_prime_UTR 30.0%
!! CAAATCTCTGTTAGTTTGTA+AGG + tig0031924:24447-24466 Msa1447680:intron 30.0%
! AAATTCTACTGTTGGTGAAT+AGG - tig0031924:24605-24624 Msa1447680:intergenic 30.0%
! TCACCAACAGTAGAATTTTA+TGG + tig0031924:24607-24626 Msa1447680:intron 30.0%
ATGCCATAAAATTCTACTGT+TGG - tig0031924:24613-24632 Msa1447680:intergenic 30.0%
! AGTAAGTTATGTTAGTTTCC+CGG + tig0031924:24972-24991 Msa1447680:intron 30.0%
TAATCTCAAATGCATTATGC+AGG + tig0031924:25111-25130 Msa1447680:intron 30.0%
AAATGCATTATGCAGGTATA+CGG + tig0031924:25118-25137 Msa1447680:intron 30.0%
! TGACATATTGCTTCTAAAGA+AGG - tig0031924:25232-25251 Msa1447680:intergenic 30.0%
!!! CTTTTCATCATTGGCTTAAT+AGG - tig0031924:25353-25372 Msa1447680:intergenic 30.0%
! TGATTTTCTGATTCTGATTC+TGG + tig0031924:25554-25573 Msa1447680:intron 30.0%
! GATTTTCTGATTCTGATTCT+GGG + tig0031924:25555-25574 Msa1447680:intron 30.0%
TTAGATGGACAATGAATTTG+AGG + tig0031924:25596-25615 Msa1447680:intron 30.0%
TTTACTATGAGAGAGAGAAA+TGG + tig0031924:25735-25754 Msa1447680:exon 30.0%
GAACGATTATATACCTTTGT+AGG - tig0031924:26132-26151 Msa1447680:intergenic 30.0%
ATTTGTCCAATGATCGAAAA+TGG + tig0031924:26167-26186 Msa1447680:intron 30.0%
! GATATTCCATTTTCGATCAT+TGG - tig0031924:26176-26195 Msa1447680:intergenic 30.0%
TTTCAGAACTTACCTCTTAA+GGG - tig0031924:26297-26316 Msa1447680:intergenic 30.0%
TGATAGCTTATGAAAGTTAC+TGG - tig0031924:26405-26424 Msa1447680:intergenic 30.0%
TTGCTTCTACAGACAAAAAT+GGG - tig0031924:26621-26640 Msa1447680:intergenic 30.0%
ATTGCTTCTACAGACAAAAA+TGG - tig0031924:26622-26641 Msa1447680:intergenic 30.0%
ATATTCGAGTATAAACCAGT+TGG + tig0031924:26695-26714 Msa1447680:three_prime_UTR 30.0%
!! TAGAGCATTGGAAAAATTTG+AGG + tig0031924:26823-26842 Msa1447680:three_prime_UTR 30.0%
ATTTGAGGAGAAGCAAATAA+AGG + tig0031924:26838-26857 Msa1447680:three_prime_UTR 30.0%
!! TATTAGAGCTTTGTTAACCA+TGG + tig0031924:26973-26992 Msa1447680:three_prime_UTR 30.0%
GCTAACTACATAACTTTACA+TGG + tig0031924:26998-27017 Msa1447680:three_prime_UTR 30.0%
TAGAATTCAGAAGAAGAATC+AGG + tig0031924:27060-27079 Msa1447680:intron 30.0%
CACGTGTTAGTAAATACAAT+TGG + tig0031924:27465-27484 Msa1447680:intron 30.0%
GAACATATTAAACTGTCAGA+AGG + tig0031924:27526-27545 Msa1447680:intron 30.0%
GTCTATCACAAAATCAAAGA+AGG + tig0031924:27592-27611 Msa1447680:three_prime_UTR 30.0%
ATGTTCTTGATACCATATGA+AGG - tig0031924:27943-27962 Msa1447680:intergenic 30.0%
AATTCTACTTATAAGGCCTT+AGG - tig0031924:28109-28128 Msa1447680:intergenic 30.0%
GCTGCATAATTCTACTTATA+AGG - tig0031924:28116-28135 Msa1447680:intergenic 30.0%
CTATATGCTCATGCTATATA+AGG - tig0031924:28203-28222 Msa1447680:intergenic 30.0%
AATGATACATGATCGAACTA+TGG - tig0031924:28275-28294 Msa1447680:intergenic 30.0%
!!! TCATCTTGTTTTGTAGATGA+TGG + tig0031924:28313-28332 Msa1447680:intron 30.0%
GATACCAACATTAAAAACAC+AGG - tig0031924:28437-28456 Msa1447680:intergenic 30.0%
TAAACAATAGAGGACATCAA+TGG - tig0031924:28607-28626 Msa1447680:intergenic 30.0%
! TTGGTGAGTATTGTGAAATA+AGG - tig0031924:28635-28654 Msa1447680:intergenic 30.0%
ACAAAGTATAGTCAATGGAA+AGG - tig0031924:28663-28682 Msa1447680:intergenic 30.0%
!!! GTTTTTTTGTTTACCGTGTG+AGG - tig0031924:22778-22797 Msa1447680:intergenic 35.0%
CACACTGAGAAAGAAGAAAA+CGG - tig0031924:22874-22893 Msa1447680:intergenic 35.0%
! TTTTCTTCTTTCTCAGTGTG+CGG + tig0031924:22874-22893 Msa1447680:five_prime_UTR 35.0%
TGATAGAGACAAATGGAAGA+AGG - tig0031924:22918-22937 Msa1447680:intergenic 35.0%
CTCTATCATCAATCAAAGGT+TGG + tig0031924:22930-22949 Msa1447680:intron 35.0%
ATTTGGCATGGATCAGATAT+GGG + tig0031924:23109-23128 Msa1447680:five_prime_UTR 35.0%
! GTTTCAATTTGGGATGTTAC+TGG + tig0031924:23135-23154 Msa1447680:intron 35.0%
CAAAAGTCCTACAGATCATT+AGG + tig0031924:23349-23368 Msa1447680:five_prime_UTR 35.0%
AGATGATCCTAATGATCTGT+AGG - tig0031924:23359-23378 Msa1447680:intergenic 35.0%
AGATCATTAGGATCATCTCA+GGG + tig0031924:23361-23380 Msa1447680:five_prime_UTR 35.0%
!!! TAGGTTCTCACTTTTTACCA+AGG - tig0031924:23915-23934 Msa1447680:intergenic 35.0%
CTTACCAACAAAATTGTGCA+CGG + tig0031924:23967-23986 Msa1447680:intron 35.0%
! TAAACCGTGCACAATTTTGT+TGG - tig0031924:23974-23993 Msa1447680:intergenic 35.0%
! GTGCACGGTTTAGTTTATAT+TGG + tig0031924:23982-24001 Msa1447680:intron 35.0%
! CTATTCATTTTCTTTCCTGG+AGG + tig0031924:24160-24179 Msa1447680:intron 35.0%
ATCAGGAAGTTGTTTAAGGA+TGG + tig0031924:24290-24309 Msa1447680:five_prime_UTR 35.0%
TTAAGGATGGCTTCATTATC+AGG + tig0031924:24303-24322 Msa1447680:five_prime_UTR 35.0%
!! ATCTCTGTTAGTTTGTAAGG+TGG + tig0031924:24450-24469 Msa1447680:intron 35.0%
TTAGTTGTGCTGAGTATTCT+AGG + tig0031924:24553-24572 Msa1447680:intron 35.0%
! TCAACCCTATTTGAAGTGTA+TGG + tig0031924:24666-24685 Msa1447680:intron 35.0%
CACTCCATACACTTCAAATA+GGG - tig0031924:24673-24692 Msa1447680:intergenic 35.0%
! TCTTATTTACAGATGTGTCG+TGG + tig0031924:24822-24841 Msa1447680:intron 35.0%
AGTGTATAGTAACAAAGAGC+TGG + tig0031924:24893-24912 Msa1447680:five_prime_UTR 35.0%
! GAGTTTAAAGTCAGAGATCT+CGG - tig0031924:25005-25024 Msa1447680:intergenic 35.0%
! GACGTTGTATTTGACTTCAT+TGG + tig0031924:25164-25183 Msa1447680:five_prime_UTR 35.0%
TAGCAAACTATGAAGTGATG+AGG + tig0031924:25254-25273 Msa1447680:five_prime_UTR 35.0%
!! AGCACTGATAGAAATAGTGA+AGG - tig0031924:25303-25322 Msa1447680:intergenic 35.0%
GGTAAGAGTGAAAAGAAATG+AGG - tig0031924:25331-25350 Msa1447680:intergenic 35.0%
ATGGACAATGAATTTGAGGA+TGG + tig0031924:25600-25619 Msa1447680:five_prime_UTR 35.0%
ACAAGCAACTTCTGATATGA+TGG + tig0031924:25623-25642 Msa1447680:five_prime_UTR 35.0%
TGTGATTTCAGTCCTTTATC+TGG + tig0031924:25706-25725 Msa1447680:five_prime_UTR 35.0%
ATTTCAGTCCTTTATCTGGA+AGG + tig0031924:25710-25729 Msa1447680:five_prime_UTR 35.0%
AGTAAACACCTTCCAGATAA+AGG - tig0031924:25721-25740 Msa1447680:intergenic 35.0%
AATGGAAGGACAATAGAAAG+TGG + tig0031924:25753-25772 Msa1447680:CDS 35.0%
! AGTGGTTCAATTGATTCACA+TGG + tig0031924:25771-25790 Msa1447680:CDS 35.0%
TCTTCCTGGATCTTCATTTA+TGG + tig0031924:25992-26011 Msa1447680:intron 35.0%
ATTGCACTTGCAGTTCATAT+TGG + tig0031924:26223-26242 Msa1447680:intron 35.0%
GCAAAATCAGGCTCTATTAT+TGG + tig0031924:26260-26279 Msa1447680:CDS 35.0%
GTTTCAGAACTTACCTCTTA+AGG - tig0031924:26298-26317 Msa1447680:intergenic 35.0%
ACAATGATCCATCAGTAAGT+AGG - tig0031924:26369-26388 Msa1447680:intergenic 35.0%
CTATTGTTTATGGAATGGCT+AGG + tig0031924:26544-26563 Msa1447680:CDS 35.0%
CTAACTACGAGGATTATTCA+GGG + tig0031924:26575-26594 Msa1447680:exon 35.0%
TAACTACGAGGATTATTCAG+GGG + tig0031924:26576-26595 Msa1447680:exon 35.0%
TGCTTCTACAGACAAAAATG+GGG - tig0031924:26620-26639 Msa1447680:intergenic 35.0%
TGCAATATGGGAAGAGAAAA+AGG + tig0031924:26743-26762 Msa1447680:three_prime_UTR 35.0%
! ACCTGATTGTTTAGAGTTGA+AGG + tig0031924:26904-26923 Msa1447680:three_prime_UTR 35.0%
! ATTGTTTAGAGTTGAAGGCT+TGG + tig0031924:26909-26928 Msa1447680:three_prime_UTR 35.0%
ACTACATAACTTTACATGGG+AGG + tig0031924:27002-27021 Msa1447680:three_prime_UTR 35.0%
ACTTTACATGGGAGGATTAA+AGG + tig0031924:27010-27029 Msa1447680:three_prime_UTR 35.0%
GGATGCAGTTATAACAACAA+TGG + tig0031924:27092-27111 Msa1447680:intron 35.0%
!! TGGTATTCAGTTGATGATGT+TGG + tig0031924:27112-27131 Msa1447680:intron 35.0%
!! AGTTGATGATGTTGGTTCTT+TGG + tig0031924:27120-27139 Msa1447680:intron 35.0%
CTGACTAAGATGAACATGTT+TGG + tig0031924:27723-27742 Msa1447680:three_prime_UTR 35.0%
TTCACCTTTGCTTAGTTTCA+AGG + tig0031924:27820-27839 Msa1447680:intron 35.0%
GAAATGCATAACAGAAACTG+TGG + tig0031924:28028-28047 Msa1447680:intron 35.0%
ATGAGCATATAGATCAGTAG+TGG + tig0031924:28211-28230 Msa1447680:intron 35.0%
!!! CTTGTTTTGTAGATGATGGT+AGG + tig0031924:28317-28336 Msa1447680:intron 35.0%
AACCAACTGTTGCAGATATT+AGG - tig0031924:28343-28362 Msa1447680:intergenic 35.0%
AAAAAACCACGCATGTGTAT+TGG + tig0031924:28370-28389 Msa1447680:three_prime_UTR 35.0%
!! TGCACCTGTGTTTTTAATGT+TGG + tig0031924:28430-28449 Msa1447680:three_prime_UTR 35.0%
AAGAAGAAAACGGTGGAGAT+TGG - tig0031924:22864-22883 Msa1447680:intergenic 40.0%
ACTGAGAAAGAAGAAAACGG+TGG - tig0031924:22871-22890 Msa1447680:intergenic 40.0%
!!! TGCTTGCATGTCCCATTTTT+TGG + tig0031924:22969-22988 Msa1447680:intron 40.0%
CATATCTGATCCATGCCAAA+TGG - tig0031924:23110-23129 Msa1447680:intergenic 40.0%
CATTTGGCATGGATCAGATA+TGG + tig0031924:23108-23127 Msa1447680:five_prime_UTR 40.0%
CAGATCATTAGGATCATCTC+AGG + tig0031924:23360-23379 Msa1447680:five_prime_UTR 40.0%
GATCATTAGGATCATCTCAG+GGG + tig0031924:23362-23381 Msa1447680:five_prime_UTR 40.0%
TTTAATCGCAGCTCGATCAT+AGG - tig0031924:23613-23632 Msa1447680:intergenic 40.0%
ATCGAGCTGCGATTAAATTC+AGG + tig0031924:23616-23635 Msa1447680:five_prime_UTR 40.0%
TCGAGCTGCGATTAAATTCA+GGG + tig0031924:23617-23636 Msa1447680:five_prime_UTR 40.0%
TGACGCAATCTACAAGATGA+TGG + tig0031924:24119-24138 Msa1447680:five_prime_UTR 40.0%
! TTTTCTTTCCTGGAGGATGA+TGG + tig0031924:24167-24186 Msa1447680:intron 40.0%
AATGTATCAGAGCTGGAACA+GGG - tig0031924:24196-24215 Msa1447680:intergenic 40.0%
TAATGTATCAGAGCTGGAAC+AGG - tig0031924:24197-24216 Msa1447680:intergenic 40.0%
TCTTTGTAGGCCAAAACATC+AGG + tig0031924:24273-24292 Msa1447680:intron 40.0%
GATAGGGAGTGAATCTTAGT+TGG - tig0031924:24332-24351 Msa1447680:intergenic 40.0%
AAGGGACGTCATTCTAGATA+TGG + tig0031924:24383-24402 Msa1447680:five_prime_UTR 40.0%
GCACTCCATACACTTCAAAT+AGG - tig0031924:24674-24693 Msa1447680:intergenic 40.0%
! AGGTTTGATCTGGCATTTTG+TGG + tig0031924:25203-25222 Msa1447680:five_prime_UTR 40.0%
TCATTCGTGGAGCAAATTAC+AGG - tig0031924:25464-25483 Msa1447680:intergenic 40.0%
CTATGAGAGAGAGAAATGGA+AGG + tig0031924:25739-25758 Msa1447680:exon 40.0%
GTTGCCATAAATGAAGATCC+AGG - tig0031924:25999-26018 Msa1447680:intergenic 40.0%
! AAATGTTTCTGCAAGCTGTG+CGG - tig0031924:26094-26113 Msa1447680:intergenic 40.0%
TGTTGCAAAATGCCCTACAA+AGG + tig0031924:26116-26135 Msa1447680:CDS 40.0%
ACTTGCAGTTCATATTGGCA+TGG + tig0031924:26228-26247 Msa1447680:intron 40.0%
!! GCATTGATTCTTCCCTTAAG+AGG + tig0031924:26282-26301 Msa1447680:CDS 40.0%
GCTAACTACGAGGATTATTC+AGG + tig0031924:26574-26593 Msa1447680:exon 40.0%
CAGGGGATAAGAATTATCAG+AGG + tig0031924:26593-26612 Msa1447680:three_prime_UTR 40.0%
TCGAGTATAAACCAGTTGGT+TGG + tig0031924:26699-26718 Msa1447680:three_prime_UTR 40.0%
TCTTGATACATCCAACCAAC+TGG - tig0031924:26713-26732 Msa1447680:intergenic 40.0%
!! AGAGAGAGCATTGTGCAATA+TGG + tig0031924:26730-26749 Msa1447680:three_prime_UTR 40.0%
!! GAGAGAGCATTGTGCAATAT+GGG + tig0031924:26731-26750 Msa1447680:three_prime_UTR 40.0%
GCCTTCAACTCTAAACAATC+AGG - tig0031924:26908-26927 Msa1447680:intergenic 40.0%
!! TAGAGCTTTGTTAACCATGG+AGG + tig0031924:26976-26995 Msa1447680:three_prime_UTR 40.0%
! AGTTATGTAGTTAGCCTCCA+TGG - tig0031924:26993-27012 Msa1447680:intergenic 40.0%
GAGGATTAAAGGTAAGTGCT+TGG + tig0031924:27021-27040 Msa1447680:intron 40.0%
!! AGAAGAATCAGGTTGACTGT+TGG + tig0031924:27071-27090 Msa1447680:intron 40.0%
ACTCTTGAGGTAAGCATCTT+CGG + tig0031924:27210-27229 Msa1447680:intron 40.0%
AGATACTTGCCTGATTCTAC+CGG + tig0031924:27557-27576 Msa1447680:three_prime_UTR 40.0%
GATAGACTTGCAGTATTTGC+CGG - tig0031924:27579-27598 Msa1447680:intergenic 40.0%
! GAGAGCATGGTATGTAATCT+TGG + tig0031924:27779-27798 Msa1447680:intron 40.0%
CATGCCTTGAAACTAAGCAA+AGG - tig0031924:27827-27846 Msa1447680:intergenic 40.0%
GTAATACAGCTCTTTGCCTA+AGG + tig0031924:28090-28109 Msa1447680:intron 40.0%
GTTTCAGCAATAATGCCAAC+AGG + tig0031924:28497-28516 Msa1447680:three_prime_UTR 40.0%
AGCAATAATGCCAACAGGAT+TGG + tig0031924:28502-28521 Msa1447680:three_prime_UTR 40.0%
AATGATTGTGCCAATCCTGT+TGG - tig0031924:28515-28534 Msa1447680:intergenic 40.0%
AGTCAATGGAAAGGAGTCAT+TGG - tig0031924:28654-28673 Msa1447680:intergenic 40.0%
GTGGAGATTGGTGTGTTCAA+CGG - tig0031924:22852-22871 Msa1447680:intergenic 45.0%
CGAGCTGCGATTAAATTCAG+GGG + tig0031924:23618-23637 Msa1447680:five_prime_UTR 45.0%
GCGATTAAATTCAGGGGAGT+TGG + tig0031924:23624-23643 Msa1447680:five_prime_UTR 45.0%
GGAGTAACACTGCACAAATG+TGG + tig0031924:23862-23881 Msa1447680:five_prime_UTR 45.0%
ACTGCACAAATGTGGCAGTT+GGG + tig0031924:23870-23889 Msa1447680:five_prime_UTR 45.0%
CTCTGTTATATCACGGACCA+TGG - tig0031924:24084-24103 Msa1447680:intergenic 45.0%
! TTTGGTGGCTCTCTCTTTGT+AGG + tig0031924:24260-24279 Msa1447680:intron 45.0%
! CTTCATCCCAGCTACTTTAG+CGG - tig0031924:24875-24894 Msa1447680:intergenic 45.0%
AGAGATCTCGGATTTGATCC+GGG - tig0031924:24993-25012 Msa1447680:intergenic 45.0%
CAGAGATCTCGGATTTGATC+CGG - tig0031924:24994-25013 Msa1447680:intergenic 45.0%
TTAGAAGTCCCACACTACGA+AGG - tig0031924:25060-25079 Msa1447680:intergenic 45.0%
TTATGCAGGTATACGGCAGA+TGG + tig0031924:25125-25144 Msa1447680:intron 45.0%
CAGAGAAGCTAACTCATTCG+TGG - tig0031924:25477-25496 Msa1447680:intergenic 45.0%
TGATGGCAAGCAGTCAACAA+AGG + tig0031924:25640-25659 Msa1447680:five_prime_UTR 45.0%
TGGCAGCAAAGTGCAAAATC+AGG + tig0031924:26248-26267 Msa1447680:CDS 45.0%
TGCAGAAGCCTACTTACTGA+TGG + tig0031924:26358-26377 Msa1447680:intron 45.0%
CTGAAAGCAGGAACGAAAAG+AGG - tig0031924:26495-26514 Msa1447680:intergenic 45.0%
TTCCTGCTTTCAGCTATGAG+AGG + tig0031924:26502-26521 Msa1447680:intron 45.0%
TCCTGCTTTCAGCTATGAGA+GGG + tig0031924:26503-26522 Msa1447680:intron 45.0%
GTCGATATGATTCTCACACG+TGG + tig0031924:27329-27348 Msa1447680:intron 45.0%
CAGTATTTGCCGGTAGAATC+AGG - tig0031924:27569-27588 Msa1447680:intergenic 45.0%
TGTGGCGCGAATCCTTATAA+TGG + tig0031924:28046-28065 Msa1447680:intron 45.0%
GGCCTAATATCTGCAACAGT+TGG + tig0031924:28338-28357 Msa1447680:three_prime_UTR 45.0%
AAACCACGCATGTGTATTGG+TGG + tig0031924:28373-28392 Msa1447680:three_prime_UTR 45.0%
CATTAGGATCATCTCAGGGG+TGG + tig0031924:23365-23384 Msa1447680:five_prime_UTR 50.0%
ACACAGCTCATGTTGCTGCT+AGG + tig0031924:23504-23523 Msa1447680:five_prime_UTR 50.0%
AGAGGGAGTTCGAAGTACAG+AGG + tig0031924:23841-23860 Msa1447680:five_prime_UTR 50.0%
CACTGCACAAATGTGGCAGT+TGG + tig0031924:23869-23888 Msa1447680:five_prime_UTR 50.0%
GCTCGAATGGGTCAATTCCT+TGG + tig0031924:23895-23914 Msa1447680:five_prime_UTR 50.0%
TTTAAATTGTGGCCGCGCCA+TGG + tig0031924:24064-24083 Msa1447680:five_prime_UTR 50.0%
TTATATCACGGACCATGGCG+CGG - tig0031924:24079-24098 Msa1447680:intergenic 50.0%
TTCACTCCCTATCCTGTGCT+AGG + tig0031924:24339-24358 Msa1447680:five_prime_UTR 50.0%
ATGAAGGAGGCCAAGAGGAA+GGG + tig0031924:24365-24384 Msa1447680:five_prime_UTR 50.0%
AGAATGACGTCCCTTCCTCT+TGG - tig0031924:24378-24397 Msa1447680:intergenic 50.0%
TTACAGATGTGTCGTGGTCG+AGG + tig0031924:24828-24847 Msa1447680:intron 50.0%
TAGCAGCCGCTAAAGTAGCT+GGG + tig0031924:24866-24885 Msa1447680:five_prime_UTR 50.0%
GGTGAGCTAAGGGACATTGA+AGG - tig0031924:25027-25046 Msa1447680:intergenic 50.0%
! CTTCATTGGTGATCCTCCTG+AGG + tig0031924:25178-25197 Msa1447680:five_prime_UTR 50.0%
AGATCAAACCTCTCCTCAGG+AGG - tig0031924:25194-25213 Msa1447680:intergenic 50.0%
TCCTGAGGAGAGGTTTGATC+TGG + tig0031924:25193-25212 Msa1447680:five_prime_UTR 50.0%
TCCCTCTCATAGCTGAAAGC+AGG - tig0031924:26507-26526 Msa1447680:intergenic 50.0%
AGGTTGTGCAGCTAACTACG+AGG + tig0031924:26564-26583 Msa1447680:exon 50.0%
CAGATGCTAGAGAATGAGCC+TGG + tig0031924:27154-27173 Msa1447680:intron 50.0%
AACTCTAGCAGGCTCTTTCC+AGG - tig0031924:27175-27194 Msa1447680:intergenic 50.0%
GTCTGTCGCTACTACTCTTG+AGG + tig0031924:27197-27216 Msa1447680:three_prime_UTR 50.0%
CATCCACCAATACACATGCG+TGG - tig0031924:28379-28398 Msa1447680:intergenic 50.0%
CCGTGTGAGGAGAAGAGAAC+CGG - tig0031924:22765-22784 Msa1435320:intergenic 55.0%
CCGGTTCTCTTCTCCTCACA+CGG + tig0031924:22762-22781 Msa1447680:five_prime_UTR 55.0%
GATTGGTGTGTTCAACGGCG+AGG - tig0031924:22847-22866 Msa1447680:intergenic 55.0%
AGGATCATCTCAGGGGTGGA+CGG + tig0031924:23369-23388 Msa1447680:five_prime_UTR 55.0%
TGGCAGTTGGGAAGCTCGAA+TGG + tig0031924:23882-23901 Msa1447680:five_prime_UTR 55.0%
GGCAGTTGGGAAGCTCGAAT+GGG + tig0031924:23883-23902 Msa1447680:five_prime_UTR 55.0%
CAGGGTAACCATCATCCTCC+AGG - tig0031924:24178-24197 Msa1447680:intergenic 55.0%
CATGCGCCTAGCACAGGATA+GGG - tig0031924:24348-24367 Msa1447680:intergenic 55.0%
TCATGCGCCTAGCACAGGAT+AGG - tig0031924:24349-24368 Msa1447680:intergenic 55.0%
ATCCTGTGCTAGGCGCATGA+AGG + tig0031924:24349-24368 Msa1447680:five_prime_UTR 55.0%
CATGAAGGAGGCCAAGAGGA+AGG + tig0031924:24364-24383 Msa1447680:five_prime_UTR 55.0%
CTAGCAGCCGCTAAAGTAGC+TGG + tig0031924:24865-24884 Msa1447680:five_prime_UTR 55.0%
!! CAGCTCGGTTGGTGAGCTAA+GGG - tig0031924:25037-25056 Msa1447680:intergenic 55.0%
! TTGGTGATCCTCCTGAGGAG+AGG + tig0031924:25183-25202 Msa1447680:five_prime_UTR 55.0%
GCCAGATCAAACCTCTCCTC+AGG - tig0031924:25197-25216 Msa1447680:intergenic 55.0%
GCGACAGACGAAACTCTAGC+AGG - tig0031924:27186-27205 Msa1447680:intergenic 55.0%
GTGTTCAACGGCGAGGTCGA+CGG - tig0031924:22840-22859 Msa1447680:intergenic 60.0%
CTCCTTCATGCGCCTAGCAC+AGG - tig0031924:24354-24373 Msa1447680:intergenic 60.0%
CTGTGCTAGGCGCATGAAGG+AGG + tig0031924:24352-24371 Msa1447680:five_prime_UTR 60.0%
GTGGTCGAGGACAGCGCTAT+AGG + tig0031924:24841-24860 Msa1447680:five_prime_UTR 60.0%
!! GCAGCTCGGTTGGTGAGCTA+AGG - tig0031924:25038-25057 Msa1447680:intergenic 60.0%
CACTACGAAGGCAGCTCGGT+TGG - tig0031924:25048-25067 Msa1447680:intergenic 60.0%
ACCGAGCTGCCTTCGTAGTG+TGG + tig0031924:25048-25067 Msa1447680:intron 60.0%
CCCACACTACGAAGGCAGCT+CGG - tig0031924:25052-25071 Msa1447680:intergenic 60.0%
CCGAGCTGCCTTCGTAGTGT+GGG + tig0031924:25049-25068 Msa1447680:intron 60.0%
GCACATGGCGTTCGAGAGCA+TGG + tig0031924:27766-27785 Msa1447680:three_prime_UTR 60.0%
TTCAACGGCGAGGTCGACGG+AGG - tig0031924:22837-22856 Msa1447680:intergenic 65.0%
GGCGCATGAAGGAGGCCAAG+AGG + tig0031924:24360-24379 Msa1447680:five_prime_UTR 65.0%
! GACGGCAAGGTGGCGGTGTG+AGG - tig0031924:22813-22832 Msa1447680:intergenic 70.0%
CGGAGGAGACGGCAAGGTGG+CGG - tig0031924:22820-22839 Msa1447680:intergenic 70.0%
CGACGGAGGAGACGGCAAGG+TGG - tig0031924:22823-22842 Msa1447680:intergenic 70.0%
GGTCGACGGAGGAGACGGCA+AGG - tig0031924:22826-22845 Msa1447680:intergenic 70.0%
GGCGAGGTCGACGGAGGAGA+CGG - tig0031924:22831-22850 Msa1447680:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0031924 gene 22755 28700 22755 ID=Msa1447680;Name=Msa1447680
tig0031924 mRNA 22755 28700 22755 ID=Msa1447680-mRNA-1;Parent=Msa1447680;Name=Msa1447680-mRNA-1;_AED=0.11;_eAED=0.11;_QI=1148|1|1|1|0.29|0.44|18|1039|83
tig0031924 exon 22755 22947 22755 ID=Msa1447680-mRNA-1:exon:16031;Parent=Msa1447680-mRNA-1
tig0031924 exon 23076 23130 23076 ID=Msa1447680-mRNA-1:exon:16032;Parent=Msa1447680-mRNA-1
tig0031924 exon 23335 23390 23335 ID=Msa1447680-mRNA-1:exon:16033;Parent=Msa1447680-mRNA-1
tig0031924 exon 23495 23525 23495 ID=Msa1447680-mRNA-1:exon:16034;Parent=Msa1447680-mRNA-1
tig0031924 exon 23608 23695 23608 ID=Msa1447680-mRNA-1:exon:16035;Parent=Msa1447680-mRNA-1
tig0031924 exon 23778 23923 23778 ID=Msa1447680-mRNA-1:exon:16036;Parent=Msa1447680-mRNA-1
tig0031924 exon 24056 24140 24056 ID=Msa1447680-mRNA-1:exon:16037;Parent=Msa1447680-mRNA-1
tig0031924 exon 24282 24404 24282 ID=Msa1447680-mRNA-1:exon:16038;Parent=Msa1447680-mRNA-1
tig0031924 exon 24834 24914 24834 ID=Msa1447680-mRNA-1:exon:16039;Parent=Msa1447680-mRNA-1
tig0031924 exon 25133 25281 25133 ID=Msa1447680-mRNA-1:exon:16040;Parent=Msa1447680-mRNA-1
tig0031924 exon 25600 25792 25600 ID=Msa1447680-mRNA-1:exon:16041;Parent=Msa1447680-mRNA-1
tig0031924 exon 26070 26137 26070 ID=Msa1447680-mRNA-1:exon:16042;Parent=Msa1447680-mRNA-1
tig0031924 exon 26236 26303 26236 ID=Msa1447680-mRNA-1:exon:16043;Parent=Msa1447680-mRNA-1
tig0031924 exon 26515 27031 26515 ID=Msa1447680-mRNA-1:exon:16044;Parent=Msa1447680-mRNA-1
tig0031924 exon 27157 27218 27157 ID=Msa1447680-mRNA-1:exon:16045;Parent=Msa1447680-mRNA-1
tig0031924 exon 27545 27614 27545 ID=Msa1447680-mRNA-1:exon:16046;Parent=Msa1447680-mRNA-1
tig0031924 exon 27706 27787 27706 ID=Msa1447680-mRNA-1:exon:16047;Parent=Msa1447680-mRNA-1
tig0031924 exon 28329 28700 28329 ID=Msa1447680-mRNA-1:exon:16048;Parent=Msa1447680-mRNA-1
tig0031924 five_prime_UTR 22755 22947 22755 ID=Msa1447680-mRNA-1:five_prime_utr;Parent=Msa1447680-mRNA-1
tig0031924 five_prime_UTR 23076 23130 23076 ID=Msa1447680-mRNA-1:five_prime_utr;Parent=Msa1447680-mRNA-1
tig0031924 five_prime_UTR 23335 23390 23335 ID=Msa1447680-mRNA-1:five_prime_utr;Parent=Msa1447680-mRNA-1
tig0031924 five_prime_UTR 23495 23525 23495 ID=Msa1447680-mRNA-1:five_prime_utr;Parent=Msa1447680-mRNA-1
tig0031924 five_prime_UTR 23608 23695 23608 ID=Msa1447680-mRNA-1:five_prime_utr;Parent=Msa1447680-mRNA-1
tig0031924 five_prime_UTR 23778 23923 23778 ID=Msa1447680-mRNA-1:five_prime_utr;Parent=Msa1447680-mRNA-1
tig0031924 five_prime_UTR 24056 24140 24056 ID=Msa1447680-mRNA-1:five_prime_utr;Parent=Msa1447680-mRNA-1
tig0031924 five_prime_UTR 24282 24404 24282 ID=Msa1447680-mRNA-1:five_prime_utr;Parent=Msa1447680-mRNA-1
tig0031924 five_prime_UTR 24834 24914 24834 ID=Msa1447680-mRNA-1:five_prime_utr;Parent=Msa1447680-mRNA-1
tig0031924 five_prime_UTR 25133 25281 25133 ID=Msa1447680-mRNA-1:five_prime_utr;Parent=Msa1447680-mRNA-1
tig0031924 five_prime_UTR 25600 25740 25600 ID=Msa1447680-mRNA-1:five_prime_utr;Parent=Msa1447680-mRNA-1
tig0031924 CDS 25741 25792 25741 ID=Msa1447680-mRNA-1:cds;Parent=Msa1447680-mRNA-1
tig0031924 CDS 26070 26137 26070 ID=Msa1447680-mRNA-1:cds;Parent=Msa1447680-mRNA-1
tig0031924 CDS 26236 26303 26236 ID=Msa1447680-mRNA-1:cds;Parent=Msa1447680-mRNA-1
tig0031924 CDS 26515 26578 26515 ID=Msa1447680-mRNA-1:cds;Parent=Msa1447680-mRNA-1
tig0031924 three_prime_UTR 26579 27031 26579 ID=Msa1447680-mRNA-1:three_prime_utr;Parent=Msa1447680-mRNA-1
tig0031924 three_prime_UTR 27157 27218 27157 ID=Msa1447680-mRNA-1:three_prime_utr;Parent=Msa1447680-mRNA-1
tig0031924 three_prime_UTR 27545 27614 27545 ID=Msa1447680-mRNA-1:three_prime_utr;Parent=Msa1447680-mRNA-1
tig0031924 three_prime_UTR 27706 27787 27706 ID=Msa1447680-mRNA-1:three_prime_utr;Parent=Msa1447680-mRNA-1
tig0031924 three_prime_UTR 28329 28700 28329 ID=Msa1447680-mRNA-1:three_prime_utr;Parent=Msa1447680-mRNA-1
Gene Sequence

>Msa1447680

ATGAGAGAGAGAAATGGAAGGACAATAGAAAGTGGTTCAATTGATTCACATGGTGTGACATCAAACACAGATGCCGCACAGCTTGCAGAAACATTTGTTGTTGCAAAATGCCCTACAAAGTTCATATTGGCATGGCAGCAAAGTGCAAAATCAGGCTCTATTATTGGCATTGATTCTTCCCTTAAGAGCTATGAGAGGGAGCGAAGATTACGAGTTACTATTGTTTATGGAATGGCTAGGTTGTGCAGCTAA
Protein sequence

>Msa1447680

MRERNGRTIESGSIDSHGVTSNTDAAQLAETFVVAKCPTKFILAWQQSAKSGSIIGIDSSLKSYERERRLRVTIVYGMARLCS*