AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1325930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1325930 MtrunA17_Chr3g0126151 86.585 82 11 0 13 94 47 128 6.39e-47 149
Msa1325930 MtrunA17_Chr4g0030191 84.783 92 14 0 1 92 157 248 1.06e-40 141
Msa1325930 MtrunA17_Chr7g0263581 64.035 114 38 1 1 111 165 278 2.97e-33 121
Msa1325930 MtrunA17_Chr5g0401891 51.678 149 69 1 1 146 178 326 3.80e-33 122
Msa1325930 MtrunA17_Chr4g0053181 56.618 136 51 1 1 128 202 337 5.68e-33 121
Msa1325930 MtrunA17_Chr2g0325911 72.527 91 25 0 1 91 160 250 6.54e-31 115
Msa1325930 MtrunA17_Chr3g0116461 90.323 62 6 0 90 151 256 317 2.48e-30 111
Msa1325930 MtrunA17_Chr4g0054351 45.055 91 49 1 1 90 349 439 4.38e-21 88.6
Msa1325930 MtrunA17_Chr7g0216601 37.815 119 73 1 1 118 104 222 1.18e-20 86.7
Msa1325930 MtrunA17_Chr3g0135161 45.556 90 48 1 2 90 347 436 2.47e-20 86.3
Msa1325930 MtrunA17_Chr6g0452911 37.288 118 73 1 2 118 108 225 6.80e-20 84.3
Msa1325930 MtrunA17_Chr8g0343851 44.444 90 49 1 2 90 285 374 1.92e-19 83.6
Msa1325930 MtrunA17_Chr8g0367311 39.344 122 65 2 1 113 21 142 2.32e-19 81.3
Msa1325930 MtrunA17_Chr5g0400871 43.956 91 50 1 1 90 288 378 6.72e-19 82.0
Msa1325930 MtrunA17_Chr1g0152161 42.222 90 51 1 2 90 349 438 1.12e-18 81.6
Msa1325930 MtrunA17_Chr5g0412151 43.956 91 50 1 1 90 263 353 1.39e-18 81.3
Msa1325930 MtrunA17_Chr4g0072291 41.758 91 52 1 1 90 198 288 1.42e-18 81.3
Msa1325930 MtrunA17_Chr7g0249621 40.659 91 53 1 1 90 298 388 2.39e-18 80.5
Msa1325930 MtrunA17_Chr8g0355191 38.525 122 66 3 1 113 91 212 3.96e-18 79.7
Msa1325930 MtrunA17_Chr4g0073521 39.286 112 67 1 2 112 84 195 3.98e-18 79.3
Msa1325930 MtrunA17_Chr4g0032631 38.462 91 55 1 1 90 202 292 1.08e-17 78.6
Msa1325930 MtrunA17_Chr2g0328971 40.000 90 53 1 2 90 204 293 6.45e-17 76.6
Msa1325930 MtrunA17_Chr8g0355181 38.938 113 68 1 1 112 92 204 7.13e-14 67.8
Msa1325930 MtrunA17_Chr8g0362541 43.158 95 53 1 1 94 105 199 1.38e-13 67.0
Msa1325930 MtrunA17_Chr4g0002011 39.823 113 67 1 1 112 75 187 3.19e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1325930 AT4G36920.1 65.789 114 36 1 1 111 157 270 8.75e-34 123
Msa1325930 AT4G36920.2 65.789 114 36 1 1 111 157 270 8.75e-34 123
Msa1325930 AT2G28550.4 60.000 120 48 0 1 120 179 298 1.91e-33 120
Msa1325930 AT2G28550.5 74.725 91 23 0 1 91 13 103 5.35e-33 118
Msa1325930 AT2G28550.2 75.556 90 22 0 1 90 179 268 5.37e-33 117
Msa1325930 AT2G28550.6 75.556 90 22 0 1 90 179 268 5.37e-33 117
Msa1325930 AT2G28550.3 73.913 92 24 0 1 92 179 270 4.19e-32 119
Msa1325930 AT2G28550.1 74.725 91 23 0 1 91 179 269 5.74e-32 118
Msa1325930 AT5G67180.4 60.345 116 45 1 1 115 122 237 2.13e-31 113
Msa1325930 AT5G67180.3 61.404 114 41 1 1 111 122 235 7.62e-31 112
Msa1325930 AT5G67180.2 61.404 114 41 1 1 111 122 235 1.56e-30 112
Msa1325930 AT5G67180.1 61.404 114 41 1 1 111 122 235 2.04e-30 112
Msa1325930 AT3G48420.1 87.097 62 8 0 90 151 252 313 4.15e-27 103
Msa1325930 AT5G60120.6 60.227 88 35 0 1 88 186 273 4.58e-21 88.6
Msa1325930 AT5G60120.1 60.227 88 35 0 1 88 186 273 4.66e-21 88.6
Msa1325930 AT5G60120.2 60.227 88 35 0 1 88 186 273 5.12e-21 88.6
Msa1325930 AT5G60120.4 60.227 88 35 0 1 88 186 273 4.88e-20 85.5
Msa1325930 AT5G60120.3 60.227 88 35 0 1 88 186 273 4.88e-20 85.5
Msa1325930 AT5G60120.5 60.227 88 35 0 1 88 186 273 4.88e-20 85.5
Msa1325930 AT2G39250.2 53.425 73 34 0 1 73 134 206 1.56e-19 82.0
Msa1325930 AT2G39250.1 53.425 73 34 0 1 73 134 206 2.73e-19 82.8
Msa1325930 AT5G57390.1 41.758 91 52 1 1 90 239 329 1.07e-18 82.0
Msa1325930 AT1G51190.1 40.659 91 53 1 1 90 226 316 1.13e-18 82.0
Msa1325930 AT5G57390.2 41.758 91 52 1 1 90 121 211 1.15e-18 81.6
Msa1325930 AT5G17430.2 41.758 91 52 1 1 90 184 274 1.51e-18 81.6
Msa1325930 AT5G17430.1 41.758 91 52 1 1 90 246 336 1.92e-18 81.3
Msa1325930 AT1G72570.1 36.066 122 69 3 1 113 259 380 1.95e-18 80.9
Msa1325930 AT4G37750.1 41.758 91 52 1 1 90 319 409 4.74e-18 80.1
Msa1325930 AT5G65510.2 42.857 91 51 1 1 90 267 357 4.83e-18 80.1
Msa1325930 AT5G65510.1 42.857 91 51 1 1 90 267 357 4.83e-18 80.1
Msa1325930 AT5G10510.6 41.758 91 52 1 1 90 304 394 1.11e-17 79.0
Msa1325930 AT5G10510.4 41.758 91 52 1 1 90 304 394 1.11e-17 79.0
Msa1325930 AT5G65510.3 42.857 91 51 1 1 90 209 299 1.36e-17 77.8
Msa1325930 AT5G10510.7 41.758 91 52 1 1 90 266 356 1.38e-17 79.0
Msa1325930 AT5G10510.5 41.758 91 52 1 1 90 266 356 1.38e-17 79.0
Msa1325930 AT5G10510.1 41.758 91 52 1 1 90 289 379 1.58e-17 78.6
Msa1325930 AT5G65510.4 42.857 91 51 1 1 90 209 299 1.94e-17 78.2
Msa1325930 AT5G10510.2 42.222 90 51 1 2 90 264 353 2.79e-17 77.8
Msa1325930 AT3G20840.1 38.462 91 55 1 1 90 217 307 3.18e-17 77.8
Msa1325930 AT3G54320.4 41.758 91 52 1 1 90 35 125 3.28e-17 77.4
Msa1325930 AT3G54320.5 41.758 91 52 1 1 90 35 125 3.28e-17 77.4
Msa1325930 AT3G54320.3 41.758 91 52 1 1 90 101 191 4.23e-17 77.4
Msa1325930 AT3G54320.1 40.000 95 56 1 1 94 101 195 4.26e-17 77.4
Msa1325930 AT5G10510.3 41.573 89 51 1 3 90 326 414 2.58e-16 75.1
Msa1325930 AT3G54990.2 56.790 81 35 0 1 81 148 228 5.28e-15 70.1
Msa1325930 AT3G54990.1 56.790 81 35 0 1 81 148 228 8.94e-15 70.5
Msa1325930 AT1G79700.3 44.211 95 52 1 1 94 12 106 3.36e-14 67.8
Msa1325930 AT1G79700.4 44.211 95 52 1 1 94 6 100 4.10e-14 67.4
Msa1325930 AT1G79700.2 44.211 95 52 1 1 94 88 182 1.00e-13 67.4
Msa1325930 AT1G16060.3 43.158 95 53 1 1 94 24 118 7.37e-13 64.7
Msa1325930 AT1G16060.1 43.158 95 53 1 1 94 94 188 1.28e-12 64.3
Msa1325930 AT1G79700.1 44.944 89 48 1 1 88 88 176 2.33e-12 63.5

Find 130 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACGAGTTACTATTGTTTA+TGG 0.127348 8_4:-38743370 Msa1325930:three_prime_UTR
AATTTAACAGTTGCTTATTC+TGG 0.149039 8_4:-38744246 Msa1325930:three_prime_UTR
ACTTTACATGGGAGGATTAA+AGG 0.234605 8_4:-38742893 Msa1325930:three_prime_UTR
TGCAATATGGGAAGAGAAAA+AGG 0.243934 8_4:-38743161 Msa1325930:three_prime_UTR
ATGTAGTTAGATAAGTTTCT+AGG 0.272462 8_4:-38743035 Msa1325930:three_prime_UTR
CATTTGGCATGGATCAGATA+TGG 0.299955 8_4:-38746835 Msa1325930:exon
GCTAACTACGAGGATTATTC+AGG 0.301139 8_4:-38743330 Msa1325930:three_prime_UTR
AGTTGATGATGTTGGTTCTT+TGG 0.313516 8_4:-38742783 Msa1325930:three_prime_UTR
GTTTCAGAACTTACCTCTTA+AGG 0.317681 8_4:+38743609 None:intergenic
ACCTGATTGTTTAGAGTTGA+AGG 0.318328 8_4:-38743000 Msa1325930:three_prime_UTR
AGAGAGAGCATTGTGCAATA+TGG 0.318597 8_4:-38743174 Msa1325930:three_prime_UTR
GAACGATTATATACCTTTGT+AGG 0.358428 8_4:+38743775 None:intergenic
CAGTATTTGCCGGTAGAATC+AGG 0.358742 8_4:+38742337 None:intergenic
AGTAAACACCTTTCAGATAA+AGG 0.359676 8_4:+38744193 None:intergenic
AACTCTAGCAGGCTCTTTCC+AGG 0.361101 8_4:+38742731 None:intergenic
TTTCAGAACTTACCTCTTAA+GGG 0.361709 8_4:+38743610 None:intergenic
ATTGCACTTGCAGTTCATAT+TGG 0.363079 8_4:-38743681 Msa1325930:intron
TCTTGATACATCCAACTAAC+TGG 0.366206 8_4:+38743194 None:intergenic
ATTTAACAGTTGCTTATTCT+GGG 0.375684 8_4:-38744245 Msa1325930:three_prime_UTR
ATCGAGCTGCGATTAAATTC+AGG 0.379752 8_4:-38746310 Msa1325930:CDS
CTGACTAAGATGAACATGTT+TGG 0.399933 8_4:-38742180 Msa1325930:three_prime_UTR
TTGAATTTGAAAATACCATT+TGG 0.400895 8_4:-38746851 Msa1325930:five_prime_UTR
ATTTGAGGAGACGCAAATAA+AGG 0.406078 8_4:-38743066 Msa1325930:three_prime_UTR
GCATTGATTCTTCCCTTAAG+AGG 0.406835 8_4:-38743622 Msa1325930:intron
GATAGACTTGCAGTATTTGC+CGG 0.410071 8_4:+38742327 None:intergenic
GACGTTGTATTTGACTTCAT+TGG 0.414112 8_4:-38744747 Msa1325930:CDS
TTAGATGGACAATGAATTTG+AGG 0.417084 8_4:-38744315 Msa1325930:intron
TTGGTGAGTATTGTGAAATA+AGG 0.427114 8_4:+38741271 None:intergenic
GCAAAATCAGGCTCTACTAT+TGG 0.434597 8_4:-38743644 Msa1325930:three_prime_UTR
ATTAGAGCTTTGTTAACCAT+TGG 0.435576 8_4:-38742930 Msa1325930:three_prime_UTR
AGCAATAATGCCAACAGGAT+TGG 0.436526 8_4:-38741401 Msa1325930:three_prime_UTR
TTATGATGATGATCTTAAAC+AGG 0.440099 8_4:-38746252 Msa1325930:intron
GAGAGAGCATTGTGCAATAT+GGG 0.440525 8_4:-38743173 Msa1325930:three_prime_UTR
TTTAATCGCAGCTCGATCAT+AGG 0.441826 8_4:+38746316 None:intergenic
AACCAACTGTTGCAGATATT+AGG 0.442398 8_4:+38741563 None:intergenic
TAGAATTCAGAAGAAGAATC+AGG 0.443996 8_4:-38742843 Msa1325930:three_prime_UTR
TCGAGTATAAACCAGTTAGT+TGG 0.451548 8_4:-38743205 Msa1325930:three_prime_UTR
AAGAAGAAAACGGTGGAGAT+TGG 0.453039 8_4:+38747082 None:intergenic
CTAGCAGCCGCTAAAGTAGC+TGG 0.453585 8_4:-38745046 Msa1325930:CDS
TGGCAGCAAAGTGCAAAATC+AGG 0.459814 8_4:-38743656 Msa1325930:three_prime_UTR
TTTACTATGAGAGAGAGAAA+TGG 0.461147 8_4:-38744176 Msa1325930:three_prime_UTR
TGTTCAAAGGTATTTAGAAA+AGG 0.464068 8_4:-38741328 Msa1325930:three_prime_UTR
GTCTATCACAAAATCAAAGA+AGG 0.465270 8_4:-38742311 Msa1325930:three_prime_UTR
GCCTTCAACTCTAAACAATC+AGG 0.470343 8_4:+38742999 None:intergenic
TCCTGAGGAGAGGTTTGATC+TGG 0.473131 8_4:-38744718 Msa1325930:CDS
AGAGCTTTGTTAACCATTGG+AGG 0.474358 8_4:-38742927 Msa1325930:three_prime_UTR
TTCGTATAAATATAGAGCAT+TGG 0.477418 8_4:-38743093 Msa1325930:three_prime_UTR
GTGGTCGAGGACAACGCTAT+AGG 0.480458 8_4:-38745070 Msa1325930:CDS
GTTTCAGCAATAATGCCAAC+AGG 0.481394 8_4:-38741406 Msa1325930:three_prime_UTR
TAAGGTTAGTTAAACAATAG+AGG 0.481505 8_4:+38741289 None:intergenic
TGAACTAATGTTATGTTCAA+AGG 0.485312 8_4:-38741341 Msa1325930:three_prime_UTR
TGGCAGTTGGGAAGCTCGAA+TGG 0.485503 8_4:-38746044 Msa1325930:CDS
TTTGAAAATACCATTTGGCA+TGG 0.493311 8_4:-38746846 Msa1325930:five_prime_UTR
AGTCAATGGAAAGGAGTCAT+TGG 0.496054 8_4:+38741252 None:intergenic
GCTAACTACATAACTTTACA+TGG 0.496572 8_4:-38742905 Msa1325930:three_prime_UTR
GCGATTAAATTCAGGGGAGT+TGG 0.497882 8_4:-38746302 Msa1325930:CDS
TGACATATTGCTTCTAAAGA+AGG 0.499768 8_4:+38744682 None:intergenic
TATATTTATACGAAAATGAA+AGG 0.501735 8_4:+38743102 None:intergenic
AGTTACTATTGTTTATGGAA+TGG 0.503180 8_4:-38743365 Msa1325930:three_prime_UTR
CTTCATCCCAGCTACTTTAG+CGG 0.503426 8_4:+38745039 None:intergenic
GCCAGATCAAACCTCTCCTC+AGG 0.506138 8_4:+38744717 None:intergenic
CAGATGCTAGAGAATGAGCC+TGG 0.507226 8_4:-38742749 Msa1325930:three_prime_UTR
TCAAAACAAAGTATAGTCAA+TGG 0.507968 8_4:+38741238 None:intergenic
CACTGCACAAATGTGGCAGT+TGG 0.508097 8_4:-38746057 Msa1325930:CDS
GCTCGAATGGGTCAATTCCT+TGG 0.510521 8_4:-38746031 Msa1325930:CDS
ACTGCACAAATGTGGCAGTT+GGG 0.511914 8_4:-38746056 Msa1325930:CDS
AGATACTTGCCTGATTCTAC+CGG 0.514786 8_4:-38742346 Msa1325930:three_prime_UTR
AACGATTATATACCTTTGTA+GGG 0.515993 8_4:+38743776 None:intergenic
ATTTCAGTCCTTTATCTGAA+AGG 0.516217 8_4:-38744201 Msa1325930:three_prime_UTR
ATTTGGCATGGATCAGATAT+GGG 0.516241 8_4:-38746834 Msa1325930:intron
CATATCTGATCCATGCCAAA+TGG 0.516686 8_4:+38746836 None:intergenic
ACAAGCAACTTCTGATATGA+TGG 0.520935 8_4:-38744288 Msa1325930:three_prime_UTR
TTACAGATGTGTCGTGGTCG+AGG 0.524433 8_4:-38745083 Msa1325930:intron
GTGTTCAACGGCGAGGTCGA+CGG 0.530961 8_4:+38747106 None:intergenic
GCACATGGCGTTCGAGAGCA+TGG 0.532295 8_4:-38742137 Msa1325930:intron
ATTGTTTAGAGTTGAAGGCT+TGG 0.537047 8_4:-38742995 Msa1325930:three_prime_UTR
CTATTGTTTATGGAATGGCT+AGG 0.538463 8_4:-38743360 Msa1325930:three_prime_UTR
TCGAGCTGCGATTAAATTCA+GGG 0.538997 8_4:-38746309 Msa1325930:CDS
TTATGCAGGCATACGGCAGA+TGG 0.545106 8_4:-38744786 Msa1325930:intron
AGAAGAATCAGGTTGACTGT+TGG 0.548176 8_4:-38742832 Msa1325930:three_prime_UTR
GTCTGTCGCTACTACTCTTG+AGG 0.550215 8_4:-38742706 Msa1325930:intron
TTGGTGATCCTCCTGAGGAG+AGG 0.552332 8_4:-38744728 Msa1325930:CDS
ACACAGCTCATGTTGCTGCT+AGG 0.553358 8_4:-38746421 Msa1325930:intron
GGCCTAATATCTGCAACAGT+TGG 0.557391 8_4:-38741565 Msa1325930:three_prime_UTR
TCCTGCTTTCAGCTATGAGA+GGG 0.559134 8_4:-38743401 Msa1325930:intron
TAAACAATAGAGGACATCAA+TGG 0.561945 8_4:+38741299 None:intergenic
CACACTGAGAAAGAAGAAAA+CGG 0.564005 8_4:+38747072 None:intergenic
ATATTTATACGAAAATGAAA+GGG 0.564014 8_4:+38743103 None:intergenic
AAACCACGCATGTGTATTGG+TGG 0.565338 8_4:-38741530 Msa1325930:three_prime_UTR
AAATGCATTATGCAGGCATA+CGG 0.566080 8_4:-38744793 Msa1325930:intron
CTAACTACGAGGATTATTCA+GGG 0.568404 8_4:-38743329 Msa1325930:three_prime_UTR
ATGGACAATGAATTTGAGGA+TGG 0.570269 8_4:-38744311 Msa1325930:three_prime_UTR
GGCAGTTGGGAAGCTCGAAT+GGG 0.571868 8_4:-38746043 Msa1325930:CDS
TTCCTGCTTTCAGCTATGAG+AGG 0.579882 8_4:-38743402 Msa1325930:intron
GAGGATTAAAGGTAAGTGCT+TGG 0.580320 8_4:-38742882 Msa1325930:three_prime_UTR
AGTGTATAGTAACAAAGAGC+GGG 0.580787 8_4:-38745018 Msa1325930:intron
TTGTCTCTATCATCAATCAA+AGG 0.582251 8_4:-38747017 Msa1325930:intron
GTTATGTAGTTAGCCTCCAA+TGG 0.587530 8_4:+38742914 None:intergenic
TGGTATTCAGTTGATGATGT+TGG 0.588095 8_4:-38742791 Msa1325930:three_prime_UTR
GCGACAGACGAAACTCTAGC+AGG 0.588210 8_4:+38742720 None:intergenic
ACAAAGTATAGTCAATGGAA+AGG 0.588594 8_4:+38741243 None:intergenic
GTGGAGATTGGTGTGTTCAA+CGG 0.591351 8_4:+38747094 None:intergenic
TCTATCACAAAATCAAAGAA+GGG 0.593364 8_4:-38742310 Msa1325930:intron
TCTTATTTACAGATGTGTCG+TGG 0.600555 8_4:-38745089 Msa1325930:intron
TGTTGCAAAATGCCCTACAA+AGG 0.603887 8_4:-38743788 Msa1325930:intron
AATGGAAGGACAATAGAAAG+TGG 0.612556 8_4:-38744158 Msa1325930:three_prime_UTR
ACTTGCAGTTCATATTGGCA+TGG 0.614305 8_4:-38743676 Msa1325930:intron
TAGCAGCCGCTAAAGTAGCT+GGG 0.615799 8_4:-38745045 Msa1325930:CDS
CTTCATTGGTGATCCTCCTG+AGG 0.623430 8_4:-38744733 Msa1325930:CDS
AGATCAAACCTCTCCTCAGG+AGG 0.625024 8_4:+38744720 None:intergenic
ACTACATAACTTTACATGGG+AGG 0.625525 8_4:-38742901 Msa1325930:three_prime_UTR
AAGTGTATAGTAACAAAGAG+CGG 0.628437 8_4:-38745019 Msa1325930:CDS
TAGCAAACTGTGAAGTGATG+AGG 0.629251 8_4:-38744657 Msa1325930:three_prime_UTR
AATGATTGTGCCAATCCTGT+TGG 0.632692 8_4:+38741391 None:intergenic
GGAGTAACACTGCACAAATG+TGG 0.639362 8_4:-38746064 Msa1325930:CDS
AGTGGTTCAATTGATTCACA+TGG 0.642905 8_4:-38744140 Msa1325930:intron
GATTGGTGTGTTCAACGGCG+AGG 0.643453 8_4:+38747099 None:intergenic
GGATGCAGTTATAACAACAA+TGG 0.643487 8_4:-38742811 Msa1325930:three_prime_UTR
TTCAACGGCGAGGTCGACGG+AGG 0.650561 8_4:+38747109 None:intergenic
TGATGGCAAGCAGTCAACAA+AGG 0.657586 8_4:-38744271 Msa1325930:three_prime_UTR
AGAGGGAGTTCGAAGTACAG+AGG 0.669918 8_4:-38746085 Msa1325930:CDS
AAATATTTCTGCAAGCTGTG+CGG 0.670797 8_4:+38743813 None:intergenic
CTAACTACATAACTTTACAT+GGG 0.671104 8_4:-38742904 Msa1325930:three_prime_UTR
CTATGAGAGAGAGAAATGGA+AGG 0.671735 8_4:-38744172 Msa1325930:three_prime_UTR
CGAGCTGCGATTAAATTCAG+GGG 0.681626 8_4:-38746308 Msa1325930:CDS
TAACTACGAGGATTATTCAG+GGG 0.696814 8_4:-38743328 Msa1325930:three_prime_UTR
CAGGGGATAAGAATTATCAG+AGG 0.706903 8_4:-38743311 Msa1325930:three_prime_UTR
CATCCACCAATACACATGCG+TGG 0.710635 8_4:+38741527 None:intergenic
ACTGAGAAAGAAGAAAACGG+TGG 0.729219 8_4:+38747075 None:intergenic
AGGTTGTGCAGCTAACTACG+AGG 0.761300 8_4:-38743340 Msa1325930:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATATGATTTACTATTTT+AGG - chr8_4:38741840-38741859 Msa1325930:intron 10.0%
!!! TTGTGTAATTAATTTTTTTA+TGG - chr8_4:38741973-38741992 Msa1325930:intron 10.0%
!!! ATAATCTTTTTTATTGTAAT+AGG - chr8_4:38744301-38744320 Msa1325930:three_prime_UTR 10.0%
!! ATATTTAATATTATTGATCA+TGG - chr8_4:38746105-38746124 Msa1325930:CDS 10.0%
!!! TTTAATCGATTTAGATTTTT+TGG - chr8_4:38741432-38741451 Msa1325930:three_prime_UTR 15.0%
!!! TTTATTTTTCACTTCATTTT+AGG - chr8_4:38741585-38741604 Msa1325930:intron 15.0%
!!! ACTATTTTTTTCTTTGATTT+TGG - chr8_4:38741804-38741823 Msa1325930:intron 15.0%
!!! AATTTGTATTTGATTTTTGT+AGG - chr8_4:38741891-38741910 Msa1325930:intron 15.0%
!! ACTTCAGTTAAATTAAAAAT+AGG + chr8_4:38742351-38742370 None:intergenic 15.0%
!! TAATTTAACTGAAGTTATTT+AGG - chr8_4:38742356-38742375 Msa1325930:three_prime_UTR 15.0%
!! CTTTGTTCAATTTATTTAAA+TGG - chr8_4:38742654-38742673 Msa1325930:intron 15.0%
!! TTCAATTTATTTAAATGGTT+TGG - chr8_4:38742659-38742678 Msa1325930:intron 15.0%
!!! GATTATTTTGTTTTTTTAGA+TGG - chr8_4:38744013-38744032 Msa1325930:intron 15.0%
!! TCAACTATTTAACATATAAA+TGG + chr8_4:38744359-38744378 None:intergenic 15.0%
!! TCATATATTAATTTCCAAAT+TGG - chr8_4:38744861-38744880 Msa1325930:intron 15.0%
!! ATATTTATACGAAAATGAAA+GGG + chr8_4:38745243-38745262 None:intergenic 15.0%
!! TATATTTATACGAAAATGAA+AGG + chr8_4:38745244-38745263 None:intergenic 15.0%
!! TGATATTATTTACATGAATA+AGG + chr8_4:38746339-38746358 None:intergenic 15.0%
!!! TGAAATGCATATTATTATTT+TGG - chr8_4:38746688-38746707 Msa1325930:intron 15.0%
!!! AAATGGTATTTTCAAATTCA+AGG + chr8_4:38741493-38741512 None:intergenic 20.0%
!! TTGAATTTGAAAATACCATT+TGG - chr8_4:38741492-38741511 Msa1325930:three_prime_UTR 20.0%
!! AAATAAAAACTTGGAAAGAT+AGG + chr8_4:38741572-38741591 None:intergenic 20.0%
!! TGAAGTGAAAAATAAAAACT+TGG + chr8_4:38741581-38741600 None:intergenic 20.0%
!!! TAGTGTAACATTTTAAATTG+TGG - chr8_4:38742470-38742489 Msa1325930:intron 20.0%
!! AAATAAAATGAATAGAAAGG+AGG + chr8_4:38742572-38742591 None:intergenic 20.0%
!! AGGAAATAAAATGAATAGAA+AGG + chr8_4:38742575-38742594 None:intergenic 20.0%
!!! TTTCTATTCATTTTATTTCC+TGG - chr8_4:38742574-38742593 Msa1325930:intron 20.0%
!!! AATTTATTTAAATGGTTTGG+TGG - chr8_4:38742662-38742681 Msa1325930:intron 20.0%
!! TCAATTCATTAAAACTATCA+AGG + chr8_4:38742843-38742862 None:intergenic 20.0%
!!! TGATAGTTTTAATGAATTGA+AGG - chr8_4:38742843-38742862 Msa1325930:three_prime_UTR 20.0%
!!! AATAAGTTGCTCTAAAATTT+TGG + chr8_4:38743077-38743096 None:intergenic 20.0%
!!! GTATATTTCTATTTACTGAA+TGG - chr8_4:38743347-38743366 Msa1325930:three_prime_UTR 20.0%
!!! GCAACTTTATGTTTTTTTAT+AGG - chr8_4:38743373-38743392 Msa1325930:three_prime_UTR 20.0%
!! GAAAAGATCAATGTTTATAT+TGG - chr8_4:38743799-38743818 Msa1325930:three_prime_UTR 20.0%
!!! TTAATGTTGTTGGATTATTT+TGG - chr8_4:38743949-38743968 Msa1325930:intron 20.0%
!!! TAATGTTGTTGGATTATTTT+GGG - chr8_4:38743950-38743969 Msa1325930:intron 20.0%
!! TTGTAGTTTATCTAAATTAG+AGG - chr8_4:38744246-38744265 Msa1325930:three_prime_UTR 20.0%
!!! CATTTTATTATAATTCTTGC+TGG - chr8_4:38744417-38744436 Msa1325930:intron 20.0%
!! AATTTCCAAATTGGTTAATT+TGG - chr8_4:38744870-38744889 Msa1325930:intron 20.0%
!! TATAACCAAATTAACCAATT+TGG + chr8_4:38744878-38744897 None:intergenic 20.0%
!! TAGGTCAAATTTGAAAAATT+AGG + chr8_4:38745701-38745720 None:intergenic 20.0%
!!! ATGGTCTTTTTTATATTTTC+AGG - chr8_4:38746124-38746143 Msa1325930:CDS 20.0%
!!! TTTTATATATTGCCTTCATA+TGG - chr8_4:38746368-38746387 Msa1325930:intron 20.0%
!!! GATTTTGTTAAACTAAGAAT+GGG + chr8_4:38746406-38746425 None:intergenic 20.0%
!!! AGATTTTGTTAAACTAAGAA+TGG + chr8_4:38746407-38746426 None:intergenic 20.0%
!! TTAGTTTAACAAAATCTAAC+TGG - chr8_4:38746410-38746429 Msa1325930:intron 20.0%
! TTTGTTCTTCTAATTGATTG+AGG - chr8_4:38741398-38741417 Msa1325930:three_prime_UTR 25.0%
!!! TAGATTTTTTGGTATGTCTT+TGG - chr8_4:38741443-38741462 Msa1325930:three_prime_UTR 25.0%
! ATATGGGTAAGTTTCAATTT+GGG - chr8_4:38741525-38741544 Msa1325930:three_prime_UTR 25.0%
!!! TTGTATTTGATTTTTGTAGG+TGG - chr8_4:38741894-38741913 Msa1325930:intron 25.0%
!! TTATGATGATGATCTTAAAC+AGG - chr8_4:38742091-38742110 Msa1325930:intron 25.0%
!! AAATCAATGTTTTCTCAAGA+GGG - chr8_4:38742241-38742260 Msa1325930:intron 25.0%
! ATATTGAAACATCATGTATC+TGG - chr8_4:38742441-38742460 Msa1325930:intron 25.0%
! AAAAGTTAATGTATCAGAGA+TGG + chr8_4:38742620-38742639 None:intergenic 25.0%
! TTGAACAAAGTTATTGTATC+AGG + chr8_4:38742644-38742663 None:intergenic 25.0%
! GAATTGAAGGATATAGATTA+TGG - chr8_4:38742856-38742875 Msa1325930:three_prime_UTR 25.0%
! AACCTATCTGATACTTTATT+TGG - chr8_4:38743143-38743162 Msa1325930:three_prime_UTR 25.0%
!! ATCCAAATAAAGTATCAGAT+AGG + chr8_4:38743148-38743167 None:intergenic 25.0%
!!! AAATTTGTTTTTGAACTGCA+TGG - chr8_4:38743197-38743216 Msa1325930:three_prime_UTR 25.0%
!!! TTTTCATCATTGGCTTAATA+GGG + chr8_4:38743784-38743803 None:intergenic 25.0%
!! AACATTGATCTTTTCATCAT+TGG + chr8_4:38743794-38743813 None:intergenic 25.0%
! TTGATGCTAATTAATGTTGT+TGG - chr8_4:38743939-38743958 Msa1325930:intron 25.0%
! AATTTAACAGTTGCTTATTC+TGG - chr8_4:38744097-38744116 Msa1325930:intron 25.0%
! ATTTAACAGTTGCTTATTCT+GGG - chr8_4:38744098-38744117 Msa1325930:intron 25.0%
!!! GTTGACTTTTGTATTTTATC+AGG - chr8_4:38744487-38744506 Msa1325930:intron 25.0%
! AACGATTATATACCTTTGTA+GGG + chr8_4:38744570-38744589 None:intergenic 25.0%
! TGGATCATTGTTTCATAATT+TGG - chr8_4:38744817-38744836 Msa1325930:intron 25.0%
! TTACGAGTTACTATTGTTTA+TGG - chr8_4:38744973-38744992 Msa1325930:intron 25.0%
! AGTTACTATTGTTTATGGAA+TGG - chr8_4:38744978-38744997 Msa1325930:intron 25.0%
!!! AAGAGAAAAAGGTTTTGATT+TGG - chr8_4:38745193-38745212 Msa1325930:intron 25.0%
! TTCGTATAAATATAGAGCAT+TGG - chr8_4:38745250-38745269 Msa1325930:intron 25.0%
! ATGTAGTTAGATAAGTTTCT+AGG - chr8_4:38745308-38745327 Msa1325930:intron 25.0%
! CTAACTACATAACTTTACAT+GGG - chr8_4:38745439-38745458 Msa1325930:intron 25.0%
! AGTATCAATGCTACATATAT+AGG + chr8_4:38745720-38745739 None:intergenic 25.0%
! TCTATCACAAAATCAAAGAA+GGG - chr8_4:38746033-38746052 Msa1325930:CDS 25.0%
! ATATTCTTGATACCATATGA+AGG + chr8_4:38746383-38746402 None:intergenic 25.0%
! CTTTGATATATTTCAAGACA+TGG - chr8_4:38746446-38746465 Msa1325930:intron 25.0%
! AGATTTATGCATCCATTATA+AGG + chr8_4:38746501-38746520 None:intergenic 25.0%
! ACAAGATGAAAAAATTAACG+CGG + chr8_4:38746742-38746761 None:intergenic 25.0%
! TGAACTAATGTTATGTTCAA+AGG - chr8_4:38747002-38747021 Msa1325930:intron 25.0%
!!! TGTTCAAAGGTATTTAGAAA+AGG - chr8_4:38747015-38747034 Msa1325930:intron 25.0%
!! TAAGGTTAGTTAAACAATAG+AGG + chr8_4:38747057-38747076 None:intergenic 25.0%
! TCAAAACAAAGTATAGTCAA+TGG + chr8_4:38747108-38747127 None:intergenic 25.0%
TTGTCTCTATCATCAATCAA+AGG - chr8_4:38741326-38741345 Msa1325930:three_prime_UTR 30.0%
ACAAAATCGCACCAAAAAAT+GGG + chr8_4:38741383-38741402 None:intergenic 30.0%
AACAAAATCGCACCAAAAAA+TGG + chr8_4:38741384-38741403 None:intergenic 30.0%
TTTGAAAATACCATTTGGCA+TGG - chr8_4:38741497-38741516 Msa1325930:three_prime_UTR 30.0%
GATATGGGTAAGTTTCAATT+TGG - chr8_4:38741524-38741543 Msa1325930:three_prime_UTR 30.0%
CAGCAATAGAGAAAATCAAA+AGG + chr8_4:38741686-38741705 None:intergenic 30.0%
! AGGCTCTGATATTCAAAATT+TGG + chr8_4:38742010-38742029 None:intergenic 30.0%
TTGATGAATGTGAAACTAGA+TGG - chr8_4:38742135-38742154 Msa1325930:intron 30.0%
! CAAATCAATGTTTTCTCAAG+AGG - chr8_4:38742240-38742259 Msa1325930:intron 30.0%
AGCAATTCTCTGTTATATCA+CGG + chr8_4:38742508-38742527 None:intergenic 30.0%
!! CTATTCATTTTATTTCCTGG+AGG - chr8_4:38742577-38742596 Msa1325930:intron 30.0%
! TAAACAACTTCCTGATGTTT+TGG + chr8_4:38742703-38742722 None:intergenic 30.0%
AAACATCAGGAAGTTGTTTA+AGG - chr8_4:38742703-38742722 Msa1325930:intron 30.0%
!! CAAATCTCTGTTAGTTTGTA+AGG - chr8_4:38742879-38742898 Msa1325930:three_prime_UTR 30.0%
! AAATTCTACTGTTGGTGAAT+AGG + chr8_4:38743037-38743056 None:intergenic 30.0%
! TCACCAACAGTAGAATTTTA+TGG - chr8_4:38743039-38743058 Msa1325930:three_prime_UTR 30.0%
ATGCCATAAAATTCTACTGT+TGG + chr8_4:38743045-38743064 None:intergenic 30.0%
AAGTGTATAGTAACAAAGAG+CGG - chr8_4:38743324-38743343 Msa1325930:three_prime_UTR 30.0%
! AGTAAGTTATGTTAGTTTCC+CGG - chr8_4:38743404-38743423 Msa1325930:intron 30.0%
TAATCTCAAATGCATTATGC+AGG - chr8_4:38743543-38743562 Msa1325930:intron 30.0%
! TGACATATTGCTTCTAAAGA+AGG + chr8_4:38743664-38743683 None:intergenic 30.0%
!!! CTTTTCATCATTGGCTTAAT+AGG + chr8_4:38743785-38743804 None:intergenic 30.0%
! TGATTTTCTGATTCTGATTC+TGG - chr8_4:38743986-38744005 Msa1325930:intron 30.0%
! GATTTTCTGATTCTGATTCT+GGG - chr8_4:38743987-38744006 Msa1325930:intron 30.0%
TTAGATGGACAATGAATTTG+AGG - chr8_4:38744028-38744047 Msa1325930:intron 30.0%
ATTTCAGTCCTTTATCTGAA+AGG - chr8_4:38744142-38744161 Msa1325930:three_prime_UTR 30.0%
AGTAAACACCTTTCAGATAA+AGG + chr8_4:38744153-38744172 None:intergenic 30.0%
TTTACTATGAGAGAGAGAAA+TGG - chr8_4:38744167-38744186 Msa1325930:three_prime_UTR 30.0%
TCTTGCTGGATATTCATTTA+TGG - chr8_4:38744431-38744450 Msa1325930:intron 30.0%
GAACGATTATATACCTTTGT+AGG + chr8_4:38744571-38744590 None:intergenic 30.0%
TTTCAGAACTTACCTCTTAA+GGG + chr8_4:38744736-38744755 None:intergenic 30.0%
TGATAGCTTATGAAAGTTAC+TGG + chr8_4:38744844-38744863 None:intergenic 30.0%
TTGCTTCTACAGACAAAAAT+GGG + chr8_4:38745060-38745079 None:intergenic 30.0%
ATTGCTTCTACAGACAAAAA+TGG + chr8_4:38745061-38745080 None:intergenic 30.0%
!! TAGAGCATTGGAAAAATTTG+AGG - chr8_4:38745262-38745281 Msa1325930:intron 30.0%
!! ATTAGAGCTTTGTTAACCAT+TGG - chr8_4:38745413-38745432 Msa1325930:intron 30.0%
GCTAACTACATAACTTTACA+TGG - chr8_4:38745438-38745457 Msa1325930:intron 30.0%
TAGAATTCAGAAGAAGAATC+AGG - chr8_4:38745500-38745519 Msa1325930:intron 30.0%
CACGTGTTAGTAAATACAAT+TGG - chr8_4:38745905-38745924 Msa1325930:intron 30.0%
GAACAGATTAAACTGTTAGA+AGG - chr8_4:38745966-38745985 Msa1325930:intron 30.0%
GTCTATCACAAAATCAAAGA+AGG - chr8_4:38746032-38746051 Msa1325930:CDS 30.0%
TGTTTGGAAAAAAAAGCTGA+TGG - chr8_4:38746179-38746198 Msa1325930:intron 30.0%
AATTCTACTTATAAGGCCTT+AGG + chr8_4:38746549-38746568 None:intergenic 30.0%
GCTGCATAATTCTACTTATA+AGG + chr8_4:38746556-38746575 None:intergenic 30.0%
GACAAAATATTTCACACACA+TGG - chr8_4:38746592-38746611 Msa1325930:intron 30.0%
CTATATGCTCATGCTATATA+AGG + chr8_4:38746643-38746662 None:intergenic 30.0%
!!! TCATCTTGTTTTGTAGATGA+TGG - chr8_4:38746753-38746772 Msa1325930:intron 30.0%
!! TACACCTGTGTTTTTAATGT+TGG - chr8_4:38746870-38746889 Msa1325930:five_prime_UTR 30.0%
TAAACAATAGAGGACATCAA+TGG + chr8_4:38747047-38747066 None:intergenic 30.0%
! TTGGTGAGTATTGTGAAATA+AGG + chr8_4:38747075-38747094 None:intergenic 30.0%
ACAAAGTATAGTCAATGGAA+AGG + chr8_4:38747103-38747122 None:intergenic 30.0%
CACACTGAGAAAGAAGAAAA+CGG + chr8_4:38741274-38741293 None:intergenic 35.0%
CTCTATCATCAATCAAAGGT+TGG - chr8_4:38741330-38741349 Msa1325930:three_prime_UTR 35.0%
ATTTGGCATGGATCAGATAT+GGG - chr8_4:38741509-38741528 Msa1325930:three_prime_UTR 35.0%
! GTTTCAATTTGGGATGTTAC+TGG - chr8_4:38741535-38741554 Msa1325930:three_prime_UTR 35.0%
CAAAAGTCCTACAGATCATT+AGG - chr8_4:38741749-38741768 Msa1325930:intron 35.0%
AGATGATCCTAATGATCTGT+AGG + chr8_4:38741759-38741778 None:intergenic 35.0%
AGATCATTAGGATCATCTCA+GGG - chr8_4:38741761-38741780 Msa1325930:intron 35.0%
!!! TAGGTTCTCACTTTTTACCA+AGG + chr8_4:38742332-38742351 None:intergenic 35.0%
CTTACCAACAAAATTGTGCA+CGG - chr8_4:38742384-38742403 Msa1325930:intron 35.0%
! TAAACCGTGCACAATTTTGT+TGG + chr8_4:38742391-38742410 None:intergenic 35.0%
! GTGCACGGTTTAGTTTATAT+TGG - chr8_4:38742399-38742418 Msa1325930:intron 35.0%
CATTACATGATGCAATCTAC+AGG - chr8_4:38742529-38742548 Msa1325930:intron 35.0%
!! TTTTATTTCCTGGAGGATGA+TGG - chr8_4:38742584-38742603 Msa1325930:intron 35.0%
AATGTATCAGAGATGGAACA+GGG + chr8_4:38742613-38742632 None:intergenic 35.0%
TAATGTATCAGAGATGGAAC+AGG + chr8_4:38742614-38742633 None:intergenic 35.0%
ATCAGGAAGTTGTTTAAGGA+TGG - chr8_4:38742707-38742726 Msa1325930:three_prime_UTR 35.0%
TTAAGGATGGCTTCATTATC+AGG - chr8_4:38742720-38742739 Msa1325930:three_prime_UTR 35.0%
!! ATCTCTGTTAGTTTGTAAGG+TGG - chr8_4:38742882-38742901 Msa1325930:three_prime_UTR 35.0%
TTAGTTGTGCTGAGTATTCT+AGG - chr8_4:38742985-38743004 Msa1325930:three_prime_UTR 35.0%
! TCAACCCTATTTGAAGTGTA+TGG - chr8_4:38743098-38743117 Msa1325930:three_prime_UTR 35.0%
CACTCCATACACTTCAAATA+GGG + chr8_4:38743105-38743124 None:intergenic 35.0%
! TCTTATTTACAGATGTGTCG+TGG - chr8_4:38743254-38743273 Msa1325930:three_prime_UTR 35.0%
AGTGTATAGTAACAAAGAGC+GGG - chr8_4:38743325-38743344 Msa1325930:three_prime_UTR 35.0%
! GAGTTTAAAGTCAGAGATCT+CGG + chr8_4:38743437-38743456 None:intergenic 35.0%
AAATGCATTATGCAGGCATA+CGG - chr8_4:38743550-38743569 Msa1325930:intron 35.0%
! GACGTTGTATTTGACTTCAT+TGG - chr8_4:38743596-38743615 Msa1325930:intron 35.0%
!! AGCACTGATAGAAATAGTGA+AGG + chr8_4:38743735-38743754 None:intergenic 35.0%
GGTAAGAGTGAAAAGAAATG+AGG + chr8_4:38743763-38743782 None:intergenic 35.0%
ATGGACAATGAATTTGAGGA+TGG - chr8_4:38744032-38744051 Msa1325930:intron 35.0%
ACAAGCAACTTCTGATATGA+TGG - chr8_4:38744055-38744074 Msa1325930:intron 35.0%
AATGGAAGGACAATAGAAAG+TGG - chr8_4:38744185-38744204 Msa1325930:three_prime_UTR 35.0%
! AGTGGTTCAATTGATTCACA+TGG - chr8_4:38744203-38744222 Msa1325930:three_prime_UTR 35.0%
! AAATATTTCTGCAAGCTGTG+CGG + chr8_4:38744533-38744552 None:intergenic 35.0%
! CTTGTCATTTGTCCAATGAT+CGG - chr8_4:38744600-38744619 Msa1325930:intron 35.0%
ATTTGTCCAATGATCGGAAA+TGG - chr8_4:38744606-38744625 Msa1325930:intron 35.0%
GATATTCCATTTCCGATCAT+TGG + chr8_4:38744615-38744634 None:intergenic 35.0%
ATTGCACTTGCAGTTCATAT+TGG - chr8_4:38744662-38744681 Msa1325930:three_prime_UTR 35.0%
GTTTCAGAACTTACCTCTTA+AGG + chr8_4:38744737-38744756 None:intergenic 35.0%
ACAATGATCCATCAGTAAGT+AGG + chr8_4:38744808-38744827 None:intergenic 35.0%
CTATTGTTTATGGAATGGCT+AGG - chr8_4:38744983-38745002 Msa1325930:intron 35.0%
CTAACTACGAGGATTATTCA+GGG - chr8_4:38745014-38745033 Msa1325930:intron 35.0%
TAACTACGAGGATTATTCAG+GGG - chr8_4:38745015-38745034 Msa1325930:intron 35.0%
TGCTTCTACAGACAAAAATG+GGG + chr8_4:38745059-38745078 None:intergenic 35.0%
TCGAGTATAAACCAGTTAGT+TGG - chr8_4:38745138-38745157 Msa1325930:intron 35.0%
TCTTGATACATCCAACTAAC+TGG + chr8_4:38745152-38745171 None:intergenic 35.0%
TGCAATATGGGAAGAGAAAA+AGG - chr8_4:38745182-38745201 Msa1325930:intron 35.0%
ATTTGAGGAGACGCAAATAA+AGG - chr8_4:38745277-38745296 Msa1325930:intron 35.0%
! ACCTGATTGTTTAGAGTTGA+AGG - chr8_4:38745343-38745362 Msa1325930:intron 35.0%
! ATTGTTTAGAGTTGAAGGCT+TGG - chr8_4:38745348-38745367 Msa1325930:intron 35.0%
ACTACATAACTTTACATGGG+AGG - chr8_4:38745442-38745461 Msa1325930:intron 35.0%
ACTTTACATGGGAGGATTAA+AGG - chr8_4:38745450-38745469 Msa1325930:intron 35.0%
GGATGCAGTTATAACAACAA+TGG - chr8_4:38745532-38745551 Msa1325930:intron 35.0%
!! TGGTATTCAGTTGATGATGT+TGG - chr8_4:38745552-38745571 Msa1325930:intron 35.0%
!! AGTTGATGATGTTGGTTCTT+TGG - chr8_4:38745560-38745579 Msa1325930:intron 35.0%
CTGACTAAGATGAACATGTT+TGG - chr8_4:38746163-38746182 Msa1325930:intron 35.0%
TTCACCTTTGCTTAGTTTCA+AGG - chr8_4:38746260-38746279 Msa1325930:CDS 35.0%
GAAATGCATAACAGAAACTG+TGG - chr8_4:38746468-38746487 Msa1325930:intron 35.0%
GTAATACAACTCTTTGCCTA+AGG - chr8_4:38746530-38746549 Msa1325930:intron 35.0%
ATGAGCATATAGATCAGTAG+TGG - chr8_4:38746651-38746670 Msa1325930:intron 35.0%
AATGATACGTGATCGAACTA+TGG + chr8_4:38746715-38746734 None:intergenic 35.0%
!!! CTTGTTTTGTAGATGATGGT+AGG - chr8_4:38746757-38746776 Msa1325930:intron 35.0%
AACCAACTGTTGCAGATATT+AGG + chr8_4:38746783-38746802 None:intergenic 35.0%
AAAAAACCACGCATGTGTAT+TGG - chr8_4:38746810-38746829 Msa1325930:intron 35.0%
GACACCAACATTAAAAACAC+AGG + chr8_4:38746877-38746896 None:intergenic 35.0%
AAGAAGAAAACGGTGGAGAT+TGG + chr8_4:38741264-38741283 None:intergenic 40.0%
ACTGAGAAAGAAGAAAACGG+TGG + chr8_4:38741271-38741290 None:intergenic 40.0%
!!! TGCTTGCATGTCCCATTTTT+TGG - chr8_4:38741369-38741388 Msa1325930:three_prime_UTR 40.0%
CATATCTGATCCATGCCAAA+TGG + chr8_4:38741510-38741529 None:intergenic 40.0%
CATTTGGCATGGATCAGATA+TGG - chr8_4:38741508-38741527 Msa1325930:three_prime_UTR 40.0%
CAGATCATTAGGATCATCTC+AGG - chr8_4:38741760-38741779 Msa1325930:intron 40.0%
GATCATTAGGATCATCTCAG+GGG - chr8_4:38741762-38741781 Msa1325930:intron 40.0%
TTTAATCGCAGCTCGATCAT+AGG + chr8_4:38742030-38742049 None:intergenic 40.0%
ATCGAGCTGCGATTAAATTC+AGG - chr8_4:38742033-38742052 Msa1325930:intron 40.0%
TCGAGCTGCGATTAAATTCA+GGG - chr8_4:38742034-38742053 Msa1325930:intron 40.0%
TGATGCAATCTACAGGATGA+TGG - chr8_4:38742536-38742555 Msa1325930:intron 40.0%
GATAGGGAGTGAATCTTAGT+TGG + chr8_4:38742749-38742768 None:intergenic 40.0%
AAGGGACGTCATTCTAGATA+TGG - chr8_4:38742800-38742819 Msa1325930:three_prime_UTR 40.0%
GCACTCCATACACTTCAAAT+AGG + chr8_4:38743106-38743125 None:intergenic 40.0%
! AGGTTTGATCTGGCATTTTG+TGG - chr8_4:38743635-38743654 Msa1325930:three_prime_UTR 40.0%
TAGCAAACTGTGAAGTGATG+AGG - chr8_4:38743686-38743705 Msa1325930:intron 40.0%
TCATTCGTGGAGCAAATTAC+AGG + chr8_4:38743896-38743915 None:intergenic 40.0%
CTATGAGAGAGAGAAATGGA+AGG - chr8_4:38744171-38744190 Msa1325930:three_prime_UTR 40.0%
TGTTGCAAAATGCCCTACAA+AGG - chr8_4:38744555-38744574 Msa1325930:intron 40.0%
ACTTGCAGTTCATATTGGCA+TGG - chr8_4:38744667-38744686 Msa1325930:three_prime_UTR 40.0%
GCAAAATCAGGCTCTACTAT+TGG - chr8_4:38744699-38744718 Msa1325930:CDS 40.0%
!! GCATTGATTCTTCCCTTAAG+AGG - chr8_4:38744721-38744740 Msa1325930:CDS 40.0%
CTGAAAGCAGGAATGAAAAG+AGG + chr8_4:38744934-38744953 None:intergenic 40.0%
GCTAACTACGAGGATTATTC+AGG - chr8_4:38745013-38745032 Msa1325930:intron 40.0%
CAGGGGATAAGAATTATCAG+AGG - chr8_4:38745032-38745051 Msa1325930:CDS 40.0%
!! AGAGAGAGCATTGTGCAATA+TGG - chr8_4:38745169-38745188 Msa1325930:intron 40.0%
!! GAGAGAGCATTGTGCAATAT+GGG - chr8_4:38745170-38745189 Msa1325930:intron 40.0%
GCCTTCAACTCTAAACAATC+AGG + chr8_4:38745347-38745366 None:intergenic 40.0%
!! AGAGCTTTGTTAACCATTGG+AGG - chr8_4:38745416-38745435 Msa1325930:intron 40.0%
! GTTATGTAGTTAGCCTCCAA+TGG + chr8_4:38745432-38745451 None:intergenic 40.0%
GAGGATTAAAGGTAAGTGCT+TGG - chr8_4:38745461-38745480 Msa1325930:intron 40.0%
!! AGAAGAATCAGGTTGACTGT+TGG - chr8_4:38745511-38745530 Msa1325930:intron 40.0%
ACTCTTGAGGTAAGCATCTT+CGG - chr8_4:38745650-38745669 Msa1325930:intron 40.0%
AGATACTTGCCTGATTCTAC+CGG - chr8_4:38745997-38746016 Msa1325930:intron 40.0%
GATAGACTTGCAGTATTTGC+CGG + chr8_4:38746019-38746038 None:intergenic 40.0%
!! AAAGCTGATGGTTTTGCACA+TGG - chr8_4:38746191-38746210 Msa1325930:intron 40.0%
CATGCCTTGAAACTAAGCAA+AGG + chr8_4:38746267-38746286 None:intergenic 40.0%
TGTGGCGCAAATCCTTATAA+TGG - chr8_4:38746486-38746505 Msa1325930:intron 40.0%
GTTTCAGCAATAATGCCAAC+AGG - chr8_4:38746937-38746956 Msa1325930:intron 40.0%
AGCAATAATGCCAACAGGAT+TGG - chr8_4:38746942-38746961 Msa1325930:intron 40.0%
AATGATTGTGCCAATCCTGT+TGG + chr8_4:38746955-38746974 None:intergenic 40.0%
AGTCAATGGAAAGGAGTCAT+TGG + chr8_4:38747094-38747113 None:intergenic 40.0%
GTGGAGATTGGTGTGTTCAA+CGG + chr8_4:38741252-38741271 None:intergenic 45.0%
CGAGCTGCGATTAAATTCAG+GGG - chr8_4:38742035-38742054 Msa1325930:intron 45.0%
GCGATTAAATTCAGGGGAGT+TGG - chr8_4:38742041-38742060 Msa1325930:intron 45.0%
GGAGTAACACTGCACAAATG+TGG - chr8_4:38742279-38742298 Msa1325930:intron 45.0%
ACTGCACAAATGTGGCAGTT+GGG - chr8_4:38742287-38742306 Msa1325930:intron 45.0%
CTCTGTTATATCACGGACCA+TGG + chr8_4:38742501-38742520 None:intergenic 45.0%
TCTTTGCAGGCCAAAACATC+AGG - chr8_4:38742690-38742709 Msa1325930:intron 45.0%
! CTTCATCCCAGCTACTTTAG+CGG + chr8_4:38743307-38743326 None:intergenic 45.0%
TTAGAAGTCCCACACTACGA+AGG + chr8_4:38743492-38743511 None:intergenic 45.0%
CAGAGAAGCTAACTCATTCG+TGG + chr8_4:38743909-38743928 None:intergenic 45.0%
TGATGGCAAGCAGTCAACAA+AGG - chr8_4:38744072-38744091 Msa1325930:intron 45.0%
TGGCAGCAAAGTGCAAAATC+AGG - chr8_4:38744687-38744706 Msa1325930:exon 45.0%
TGCAGAAGCCTACTTACTGA+TGG - chr8_4:38744797-38744816 Msa1325930:intron 45.0%
TTCCTGCTTTCAGCTATGAG+AGG - chr8_4:38744941-38744960 Msa1325930:intron 45.0%
TCCTGCTTTCAGCTATGAGA+GGG - chr8_4:38744942-38744961 Msa1325930:intron 45.0%
CAGTATTTGCCGGTAGAATC+AGG + chr8_4:38746009-38746028 None:intergenic 45.0%
GGCCTAATATCTGCAACAGT+TGG - chr8_4:38746778-38746797 Msa1325930:intron 45.0%
AAACCACGCATGTGTATTGG+TGG - chr8_4:38746813-38746832 Msa1325930:intron 45.0%
CATTAGGATCATCTCAGGGG+TGG - chr8_4:38741765-38741784 Msa1325930:intron 50.0%
ACACAGCTCATGTTGCTGCT+AGG - chr8_4:38741922-38741941 Msa1325930:intron 50.0%
AGAGGGAGTTCGAAGTACAG+AGG - chr8_4:38742258-38742277 Msa1325930:intron 50.0%
CACTGCACAAATGTGGCAGT+TGG - chr8_4:38742286-38742305 Msa1325930:intron 50.0%
GCTCGAATGGGTCAATTCCT+TGG - chr8_4:38742312-38742331 Msa1325930:three_prime_UTR 50.0%
TTTAAATTGTGGCCGCGCCA+TGG - chr8_4:38742481-38742500 Msa1325930:intron 50.0%
TTATATCACGGACCATGGCG+CGG + chr8_4:38742496-38742515 None:intergenic 50.0%
! TTTGGTGGCTCTCTCTTTGC+AGG - chr8_4:38742677-38742696 Msa1325930:intron 50.0%
TTCACTCCCTATCCTGTGCT+AGG - chr8_4:38742756-38742775 Msa1325930:three_prime_UTR 50.0%
ATGAAGGAGGCCAAGAGGAA+GGG - chr8_4:38742782-38742801 Msa1325930:three_prime_UTR 50.0%
AGAATGACGTCCCTTCCTCT+TGG + chr8_4:38742795-38742814 None:intergenic 50.0%
TTACAGATGTGTCGTGGTCG+AGG - chr8_4:38743260-38743279 Msa1325930:three_prime_UTR 50.0%
TAGCAGCCGCTAAAGTAGCT+GGG - chr8_4:38743298-38743317 Msa1325930:three_prime_UTR 50.0%
! AGAGATCTCGGAGTTGATCC+GGG + chr8_4:38743425-38743444 None:intergenic 50.0%
! CAGAGATCTCGGAGTTGATC+CGG + chr8_4:38743426-38743445 None:intergenic 50.0%
GGTGAGCTAAGGGACATTGA+AGG + chr8_4:38743459-38743478 None:intergenic 50.0%
TTATGCAGGCATACGGCAGA+TGG - chr8_4:38743557-38743576 Msa1325930:intron 50.0%
! CTTCATTGGTGATCCTCCTG+AGG - chr8_4:38743610-38743629 Msa1325930:intron 50.0%
AGATCAAACCTCTCCTCAGG+AGG + chr8_4:38743626-38743645 None:intergenic 50.0%
TCCTGAGGAGAGGTTTGATC+TGG - chr8_4:38743625-38743644 Msa1325930:three_prime_UTR 50.0%
TCCCTCTCATAGCTGAAAGC+AGG + chr8_4:38744946-38744965 None:intergenic 50.0%
AGGTTGTGCAGCTAACTACG+AGG - chr8_4:38745003-38745022 Msa1325930:intron 50.0%
CAGATGCTAGAGAATGAGCC+TGG - chr8_4:38745594-38745613 Msa1325930:intron 50.0%
AACTCTAGCAGGCTCTTTCC+AGG + chr8_4:38745615-38745634 None:intergenic 50.0%
GTCTGTCGCTACTACTCTTG+AGG - chr8_4:38745637-38745656 Msa1325930:intron 50.0%
GTCGACATGATTCTCACACG+TGG - chr8_4:38745769-38745788 Msa1325930:intron 50.0%
CATCCACCAATACACATGCG+TGG + chr8_4:38746819-38746838 None:intergenic 50.0%
GATTGGTGTGTTCAACGGCG+AGG + chr8_4:38741247-38741266 None:intergenic 55.0%
AGGATCATCTCAGGGGTGGA+CGG - chr8_4:38741769-38741788 Msa1325930:intron 55.0%
TGGCAGTTGGGAAGCTCGAA+TGG - chr8_4:38742299-38742318 Msa1325930:intron 55.0%
GGCAGTTGGGAAGCTCGAAT+GGG - chr8_4:38742300-38742319 Msa1325930:intron 55.0%
CAGGGTAACCATCATCCTCC+AGG + chr8_4:38742595-38742614 None:intergenic 55.0%
CATGCGCCTAGCACAGGATA+GGG + chr8_4:38742765-38742784 None:intergenic 55.0%
TCATGCGCCTAGCACAGGAT+AGG + chr8_4:38742766-38742785 None:intergenic 55.0%
ATCCTGTGCTAGGCGCATGA+AGG - chr8_4:38742766-38742785 Msa1325930:three_prime_UTR 55.0%
CATGAAGGAGGCCAAGAGGA+AGG - chr8_4:38742781-38742800 Msa1325930:three_prime_UTR 55.0%
GTGGTCGAGGACAACGCTAT+AGG - chr8_4:38743273-38743292 Msa1325930:three_prime_UTR 55.0%
CTAGCAGCCGCTAAAGTAGC+TGG - chr8_4:38743297-38743316 Msa1325930:three_prime_UTR 55.0%
!! CAGCTCGGTTGGTGAGCTAA+GGG + chr8_4:38743469-38743488 None:intergenic 55.0%
! TTGGTGATCCTCCTGAGGAG+AGG - chr8_4:38743615-38743634 Msa1325930:intron 55.0%
GCCAGATCAAACCTCTCCTC+AGG + chr8_4:38743629-38743648 None:intergenic 55.0%
GCGACAGACGAAACTCTAGC+AGG + chr8_4:38745626-38745645 None:intergenic 55.0%
GTGTTCAACGGCGAGGTCGA+CGG + chr8_4:38741240-38741259 None:intergenic 60.0%
CTCCTTCATGCGCCTAGCAC+AGG + chr8_4:38742771-38742790 None:intergenic 60.0%
CTGTGCTAGGCGCATGAAGG+AGG - chr8_4:38742769-38742788 Msa1325930:three_prime_UTR 60.0%
!! GCAGCTCGGTTGGTGAGCTA+AGG + chr8_4:38743470-38743489 None:intergenic 60.0%
CACTACGAAGGCAGCTCGGT+TGG + chr8_4:38743480-38743499 None:intergenic 60.0%
ACCGAGCTGCCTTCGTAGTG+TGG - chr8_4:38743480-38743499 Msa1325930:intron 60.0%
CCCACACTACGAAGGCAGCT+CGG + chr8_4:38743484-38743503 None:intergenic 60.0%
CCGAGCTGCCTTCGTAGTGT+GGG - chr8_4:38743481-38743500 Msa1325930:intron 60.0%
TTCAACGGCGAGGTCGACGG+AGG + chr8_4:38741237-38741256 None:intergenic 65.0%
GGCGCATGAAGGAGGCCAAG+AGG - chr8_4:38742777-38742796 Msa1325930:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 38741225 38747140 38741225 ID=Msa1325930;Name=Msa1325930
chr8_4 mRNA 38741225 38747140 38741225 ID=Msa1325930-mRNA-1;Parent=Msa1325930;Name=Msa1325930-mRNA-1;_AED=0.14;_eAED=0.14;_QI=174|0.84|1|1|0.53|0.42|14|1601|151
chr8_4 exon 38741225 38741596 38741225 ID=Msa1325930-mRNA-1:exon:11795;Parent=Msa1325930-mRNA-1
chr8_4 exon 38742138 38742219 38742138 ID=Msa1325930-mRNA-1:exon:11794;Parent=Msa1325930-mRNA-1
chr8_4 exon 38742311 38742380 38742311 ID=Msa1325930-mRNA-1:exon:11793;Parent=Msa1325930-mRNA-1
chr8_4 exon 38742707 38743411 38742707 ID=Msa1325930-mRNA-1:exon:11792;Parent=Msa1325930-mRNA-1
chr8_4 exon 38743623 38743690 38743623 ID=Msa1325930-mRNA-1:exon:11791;Parent=Msa1325930-mRNA-1
chr8_4 exon 38743789 38743856 38743789 ID=Msa1325930-mRNA-1:exon:11790;Parent=Msa1325930-mRNA-1
chr8_4 exon 38744141 38744333 38744141 ID=Msa1325930-mRNA-1:exon:11789;Parent=Msa1325930-mRNA-1
chr8_4 exon 38744652 38744800 38744652 ID=Msa1325930-mRNA-1:exon:11788;Parent=Msa1325930-mRNA-1
chr8_4 exon 38745019 38745099 38745019 ID=Msa1325930-mRNA-1:exon:11787;Parent=Msa1325930-mRNA-1
chr8_4 exon 38746025 38746170 38746025 ID=Msa1325930-mRNA-1:exon:11786;Parent=Msa1325930-mRNA-1
chr8_4 exon 38746253 38746340 38746253 ID=Msa1325930-mRNA-1:exon:11785;Parent=Msa1325930-mRNA-1
chr8_4 exon 38746422 38746452 38746422 ID=Msa1325930-mRNA-1:exon:11784;Parent=Msa1325930-mRNA-1
chr8_4 exon 38746835 38746889 38746835 ID=Msa1325930-mRNA-1:exon:11783;Parent=Msa1325930-mRNA-1
chr8_4 exon 38747018 38747140 38747018 ID=Msa1325930-mRNA-1:exon:11782;Parent=Msa1325930-mRNA-1
chr8_4 five_prime_UTR 38747018 38747140 38747018 ID=Msa1325930-mRNA-1:five_prime_utr;Parent=Msa1325930-mRNA-1
chr8_4 five_prime_UTR 38746839 38746889 38746839 ID=Msa1325930-mRNA-1:five_prime_utr;Parent=Msa1325930-mRNA-1
chr8_4 CDS 38746835 38746838 38746835 ID=Msa1325930-mRNA-1:cds;Parent=Msa1325930-mRNA-1
chr8_4 CDS 38746422 38746452 38746422 ID=Msa1325930-mRNA-1:cds;Parent=Msa1325930-mRNA-1
chr8_4 CDS 38746253 38746340 38746253 ID=Msa1325930-mRNA-1:cds;Parent=Msa1325930-mRNA-1
chr8_4 CDS 38746025 38746170 38746025 ID=Msa1325930-mRNA-1:cds;Parent=Msa1325930-mRNA-1
chr8_4 CDS 38745019 38745099 38745019 ID=Msa1325930-mRNA-1:cds;Parent=Msa1325930-mRNA-1
chr8_4 CDS 38744695 38744800 38744695 ID=Msa1325930-mRNA-1:cds;Parent=Msa1325930-mRNA-1
chr8_4 three_prime_UTR 38744652 38744694 38744652 ID=Msa1325930-mRNA-1:three_prime_utr;Parent=Msa1325930-mRNA-1
chr8_4 three_prime_UTR 38744141 38744333 38744141 ID=Msa1325930-mRNA-1:three_prime_utr;Parent=Msa1325930-mRNA-1
chr8_4 three_prime_UTR 38743789 38743856 38743789 ID=Msa1325930-mRNA-1:three_prime_utr;Parent=Msa1325930-mRNA-1
chr8_4 three_prime_UTR 38743623 38743690 38743623 ID=Msa1325930-mRNA-1:three_prime_utr;Parent=Msa1325930-mRNA-1
chr8_4 three_prime_UTR 38742707 38743411 38742707 ID=Msa1325930-mRNA-1:three_prime_utr;Parent=Msa1325930-mRNA-1
chr8_4 three_prime_UTR 38742311 38742380 38742311 ID=Msa1325930-mRNA-1:three_prime_utr;Parent=Msa1325930-mRNA-1
chr8_4 three_prime_UTR 38742138 38742219 38742138 ID=Msa1325930-mRNA-1:three_prime_utr;Parent=Msa1325930-mRNA-1
chr8_4 three_prime_UTR 38741225 38741596 38741225 ID=Msa1325930-mRNA-1:three_prime_utr;Parent=Msa1325930-mRNA-1
Gene Sequence

>Msa1325930

ATGGGTGGATTTAACACAGCTCATGTTGCTGCTAGAGCCTATGATCGAGCTGCGATTAAATTCAGGGGAGTTGGTGCTTACATAAATTTCAATTTGAATGATTATGATGATGATCTTAAACAGACGAAGAATTTATCGAAAGATGAGTCTTTGCAAACACTTCGTCTACAAATCAATGTTTTCTCAAGAGGGAGTTCGAAGTACAGAGGAGTAACACTGCACAAATGTGGCAGTTGGGAAGCTCGAATGGGTCAATTCCTTGGTAAAAAATGTGTCGTGGTCGAGGACAACGCTATAGGTCTAGCAGCCGCTAAAGTAGCTGGGATGAAGTGTATAGTAACAAAGAGCGGGCATACGGCAGATGGAGATTTCTTAAATGCAGACGTTGTATTTGACTTCATTGGTGATCCTCCTGAGGAGAGGTTTGATCTGGCATTTTGTGGTAGCCTTCTTTAG
Protein sequence

>Msa1325930

MGGFNTAHVAARAYDRAAIKFRGVGAYINFNLNDYDDDLKQTKNLSKDESLQTLRLQINVFSRGSSKYRGVTLHKCGSWEARMGQFLGKKCVVVEDNAIGLAAAKVAGMKCIVTKSGHTADGDFLNADVVFDFIGDPPEERFDLAFCGSLL*