AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0987930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 159 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACGAGTTACTATTGTTTA+TGG 0.127348 6_4:+39938728 Msa0987930:three_prime_UTR
AATTTAACAGTTGCTTATTC+TGG 0.149039 6_4:+39937857 Msa0987930:three_prime_UTR
AAACATCAGGAAGTTGTTTA+AGG 0.196812 6_4:+39936478 Msa0987930:three_prime_UTR
ACTTTACATGGGAGGATTAA+AGG 0.234605 6_4:+39939204 Msa0987930:three_prime_UTR
TGCAATATGGGAAGAGAAAA+AGG 0.243934 6_4:+39938937 Msa0987930:three_prime_UTR
TAAACAACTTCCTGATGTTT+TGG 0.257525 6_4:-39936475 None:intergenic
ATGTAGTTAGATAAGTTTCT+AGG 0.272462 6_4:+39939063 Msa0987930:three_prime_UTR
CATTTGGCATGGATCAGATA+TGG 0.299955 6_4:+39935284 Msa0987930:three_prime_UTR
GCTAACTACGAGGATTATTC+AGG 0.301139 6_4:+39938768 Msa0987930:three_prime_UTR
TGTGATTTCAGTCCTTTATC+TGG 0.308734 6_4:+39937898 Msa0987930:three_prime_UTR
GTTTCAGAACTTACCTCTTA+AGG 0.317681 6_4:-39938489 None:intergenic
ACCTGATTGTTTAGAGTTGA+AGG 0.318328 6_4:+39939098 Msa0987930:three_prime_UTR
AGAGAGAGCATTGTGCAATA+TGG 0.318597 6_4:+39938924 Msa0987930:three_prime_UTR
TTAAGGATGGCTTCATTATC+AGG 0.321072 6_4:+39936495 Msa0987930:three_prime_UTR
AGCAATAATGCCAACAAGAT+TGG 0.357585 6_4:+39940684 Msa0987930:three_prime_UTR
GAACGATTATATACCTTTGT+AGG 0.358428 6_4:-39938323 None:intergenic
CAGTATTTGCCGGTAGAATC+AGG 0.358742 6_4:-39939760 None:intergenic
AACTCTAGCAGGCTCTTTCC+AGG 0.361101 6_4:-39939366 None:intergenic
TTTCAGAACTTACCTCTTAA+GGG 0.361709 6_4:-39938488 None:intergenic
ATTGCACTTGCAGTTCATAT+TGG 0.363079 6_4:+39938417 Msa0987930:intron
CAAAAGTCCTACAGATCATT+AGG 0.366008 6_4:+39935526 Msa0987930:three_prime_UTR
ATTTAACAGTTGCTTATTCT+GGG 0.375684 6_4:+39937858 Msa0987930:three_prime_UTR
ATCGAGCTGCGATTAAATTC+AGG 0.379752 6_4:+39935810 Msa0987930:three_prime_UTR
CTCCTTCATGCGCCTGGCAC+AGG 0.381189 6_4:-39936543 None:intergenic
CTCTTCCTTCTTCTTCAGTC+CGG 0.389151 6_4:+39934928 None:intergenic
AGTAAACACCTTCCAGATAA+AGG 0.389171 6_4:-39937910 None:intergenic
CTGACTAAGATGAACATGTT+TGG 0.399933 6_4:+39939905 Msa0987930:three_prime_UTR
TTGAATTTGAAAATACCATT+TGG 0.400895 6_4:+39935268 Msa0987930:three_prime_UTR
AAATGCATTATGCAGGTATA+CGG 0.405222 6_4:+39937325 Msa0987930:intron
GCATTGATTCTTCCCTTAAG+AGG 0.406835 6_4:+39938476 Msa0987930:three_prime_UTR
CTTGGCCTCCTTCATGCGCC+TGG 0.408884 6_4:-39936549 None:intergenic
GATAGACTTGCAGTATTTGC+CGG 0.410071 6_4:-39939770 None:intergenic
GACGTTGTATTTGACTTCAT+TGG 0.414112 6_4:+39937371 Msa0987930:three_prime_UTR
TTAGATGGACAATGAATTTG+AGG 0.417084 6_4:+39937788 Msa0987930:intron
ATTTGAGGAGAAGCAAATAA+AGG 0.421213 6_4:+39939032 Msa0987930:three_prime_UTR
TTGGTGAGTATTGTGAAATA+AGG 0.427114 6_4:-39940814 None:intergenic
CAGATCATTAGGATCATCTC+AGG 0.432627 6_4:+39935537 Msa0987930:three_prime_UTR
GCAAAATCAGGCTCTACTAT+TGG 0.434597 6_4:+39938454 Msa0987930:three_prime_UTR
TTATGATGATGATCTTAAAC+AGG 0.440099 6_4:+39935868 Msa0987930:three_prime_UTR
GAGAGAGCATTGTGCAATAT+GGG 0.440525 6_4:+39938925 Msa0987930:three_prime_UTR
AATGATTGTGCCAATCTTGT+TGG 0.441638 6_4:-39940694 None:intergenic
TTTAATCGCAGCTCGATCAT+AGG 0.441826 6_4:-39935804 None:intergenic
AACCAACTGTTGCAGATATT+AGG 0.442398 6_4:-39940522 None:intergenic
AAGGGACGTCATTCTAGATA+TGG 0.444919 6_4:+39936575 Msa0987930:three_prime_UTR
GATAGGGAGTGAATCTTAGT+TGG 0.449443 6_4:-39936521 None:intergenic
CATGCGCCTGGCACAGGATA+GGG 0.450810 6_4:-39936537 None:intergenic
AAGAAGAAAACGGTGGAGAT+TGG 0.453039 6_4:-39935037 None:intergenic
CTAGCAGCCGCTAAAGTAGC+TGG 0.453585 6_4:+39937072 Msa0987930:three_prime_UTR
TCTTTGCAGGCCAAAACATC+AGG 0.454379 6_4:+39936465 Msa0987930:intron
TGGCAGCAAAGTGCAAAATC+AGG 0.459814 6_4:+39938442 Msa0987930:three_prime_UTR
TTTACTATGAGAGAGAGAAA+TGG 0.461147 6_4:+39937927 Msa0987930:three_prime_UTR
TCTTGATACATCCAACCAAC+TGG 0.462684 6_4:-39938904 None:intergenic
TGTTCAAAGGTATTTAGAAA+AGG 0.464068 6_4:+39940757 Msa0987930:three_prime_UTR
GTCTATCACAAAATCAAAGA+AGG 0.465270 6_4:+39939786 Msa0987930:three_prime_UTR
GCCTTCAACTCTAAACAATC+AGG 0.470343 6_4:-39939099 None:intergenic
GTGGTCGAGGACAGCGCTAT+AGG 0.473850 6_4:+39937048 Msa0987930:three_prime_UTR
TCAAAACAAAATATAGTCAA+TGG 0.477269 6_4:-39940847 None:intergenic
TTCGTATAAATATAGAGCAT+TGG 0.477418 6_4:+39939005 Msa0987930:three_prime_UTR
TAAGGTTAGTTAAACAATAG+AGG 0.481505 6_4:-39940796 None:intergenic
CACTGCACAAATGTGGCAGT+TGG 0.483877 6_4:+39936061 Msa0987930:three_prime_UTR
TGAACTAATGTTATGTTCAA+AGG 0.485312 6_4:+39940744 Msa0987930:three_prime_UTR
TGGCAGTTGGGAAGCTCGAA+TGG 0.485503 6_4:+39936074 Msa0987930:three_prime_UTR
ATTTCAGTCCTTTATCTGGA+AGG 0.490219 6_4:+39937902 Msa0987930:three_prime_UTR
TTTGAAAATACCATTTGGCA+TGG 0.493311 6_4:+39935273 Msa0987930:three_prime_UTR
CATGAAGGAGGCCAAGAGGA+AGG 0.493620 6_4:+39936556 Msa0987930:three_prime_UTR
ATCAGGAAGTTGTTTAAGGA+TGG 0.495341 6_4:+39936482 Msa0987930:three_prime_UTR
AGTCAATGGAAAGGAGTCAT+TGG 0.496054 6_4:-39940833 None:intergenic
TTCACTCCCTATCCTGTGCC+AGG 0.496419 6_4:+39936531 Msa0987930:three_prime_UTR
GCTAACTACATAACTTTACA+TGG 0.496572 6_4:+39939192 Msa0987930:three_prime_UTR
GCGATTAAATTCAGGGGAGT+TGG 0.497882 6_4:+39935818 Msa0987930:three_prime_UTR
TATATTTATACGAAAATGAA+AGG 0.501735 6_4:-39938996 None:intergenic
AGTTACTATTGTTTATGGAA+TGG 0.503180 6_4:+39938733 Msa0987930:three_prime_UTR
CTTCATCCCAGCTACTTTAG+CGG 0.503426 6_4:-39937079 None:intergenic
GCCAGATCAAACCTCTCCTC+AGG 0.506138 6_4:-39937401 None:intergenic
CAGATGCTAGAGAATGAGCC+TGG 0.507226 6_4:+39939348 Msa0987930:intron
GCTCGAATGGGTCAATTCCT+TGG 0.510521 6_4:+39936087 Msa0987930:three_prime_UTR
ACTGCACAAATGTGGCAGTT+GGG 0.510996 6_4:+39936062 Msa0987930:three_prime_UTR
TTTAAATTGTGGCCGCGCCA+TGG 0.512803 6_4:+39936256 Msa0987930:three_prime_UTR
CCGTGTGAGGAGAAGAGAAC+CGG 0.514670 6_4:-39934947 None:intergenic
AGATACTTGCCTGATTCTAC+CGG 0.514786 6_4:+39939751 Msa0987930:three_prime_UTR
TCATGCGCCTGGCACAGGAT+AGG 0.515882 6_4:-39936538 None:intergenic
AACGATTATATACCTTTGTA+GGG 0.515993 6_4:-39938322 None:intergenic
GGCGAGGTCGACGGAGGAGA+CGG 0.516043 6_4:-39935004 None:intergenic
ATTTGGCATGGATCAGATAT+GGG 0.516241 6_4:+39935285 Msa0987930:three_prime_UTR
CATATCTGATCCATGCCAAA+TGG 0.516686 6_4:-39935283 None:intergenic
ACAAGCAACTTCTGATATGA+TGG 0.520935 6_4:+39937815 Msa0987930:three_prime_UTR
TTACAGATGTGTCGTGGTCG+AGG 0.524433 6_4:+39937035 Msa0987930:intron
AGTTATGTAGTTAGCCTCCA+TGG 0.526706 6_4:-39939184 None:intergenic
CATTACATGATGCAATCTAC+AGG 0.528298 6_4:+39936304 Msa0987930:three_prime_UTR
GTGTTCAACGGCGAGGTCGA+CGG 0.530961 6_4:-39935013 None:intergenic
AGAATGACGTCCCTTCCTCT+TGG 0.531849 6_4:-39936567 None:intergenic
GCACATGGCGTTCGAGAGCA+TGG 0.532295 6_4:+39939948 Msa0987930:three_prime_UTR
CGGAGGAGACGGCAAGGTGG+CGG 0.535976 6_4:-39934993 None:intergenic
ATTGTTTAGAGTTGAAGGCT+TGG 0.537047 6_4:+39939103 Msa0987930:three_prime_UTR
CTATTGTTTATGGAATGGCT+AGG 0.538463 6_4:+39938738 Msa0987930:three_prime_UTR
TCGAGCTGCGATTAAATTCA+GGG 0.538997 6_4:+39935811 Msa0987930:three_prime_UTR
ATCCTGTGCCAGGCGCATGA+AGG 0.540524 6_4:+39936541 Msa0987930:three_prime_UTR
GACGGCAAGGTGGCGGTGTG+AGG 0.541397 6_4:-39934986 None:intergenic
TCGAGTATAAACCAGTTGGT+TGG 0.543459 6_4:+39938893 Msa0987930:three_prime_UTR
GTCTGTCGCTACTACTCTTG+AGG 0.550215 6_4:+39939391 Msa0987930:three_prime_UTR
TTGGTGATCCTCCTGAGGAG+AGG 0.552332 6_4:+39937390 Msa0987930:three_prime_UTR
ACACAGCTCATGTTGCTGCT+AGG 0.553358 6_4:+39935699 Msa0987930:three_prime_UTR
CACACTGAGAAAGAAGAAAA+CGG 0.554412 6_4:-39935047 None:intergenic
AGATGATCCTAATGATCTGT+AGG 0.555523 6_4:-39935533 None:intergenic
GGCCTAATATCTGCAACAGT+TGG 0.557391 6_4:+39940520 Msa0987930:three_prime_UTR
ATGAAGGAGGCCAAGAGGAA+GGG 0.559525 6_4:+39936557 Msa0987930:three_prime_UTR
TAAACAATAGAGGACATCAA+TGG 0.561945 6_4:-39940786 None:intergenic
ACAAAATATAGTCAATGGAA+AGG 0.563970 6_4:-39940842 None:intergenic
ATATTTATACGAAAATGAAA+GGG 0.564014 6_4:-39938995 None:intergenic
TCCTGCTTTCAGCTATGAGA+GGG 0.564239 6_4:+39938697 Msa0987930:intron
TGATGCAATCTACAGGATGA+TGG 0.565247 6_4:+39936311 Msa0987930:three_prime_UTR
AAACCACGCATGTGTATTGG+TGG 0.565338 6_4:+39940555 Msa0987930:three_prime_UTR
CCGGTTCTCTTCTCCTCACA+CGG 0.565646 6_4:+39934947 Msa0987930:CDS
CTAACTACGAGGATTATTCA+GGG 0.568404 6_4:+39938769 Msa0987930:three_prime_UTR
TTATGCAGGTATACGGCAGA+TGG 0.570206 6_4:+39937332 Msa0987930:intron
ATGGACAATGAATTTGAGGA+TGG 0.570269 6_4:+39937792 Msa0987930:three_prime_UTR
GGCAGTTGGGAAGCTCGAAT+GGG 0.571868 6_4:+39936075 Msa0987930:three_prime_UTR
CTGTGCCAGGCGCATGAAGG+AGG 0.575444 6_4:+39936544 Msa0987930:three_prime_UTR
AGTGTATAGTAACAAAGAGC+GGG 0.580787 6_4:+39937100 Msa0987930:three_prime_UTR
TTGTCTCTATCATCAATCAA+AGG 0.583253 6_4:+39935102 Msa0987930:CDS
TTCCTGCTTTCAGCTATGAG+AGG 0.585708 6_4:+39938696 Msa0987930:intron
CTCTGTTATATCACGGACCA+TGG 0.587310 6_4:-39936273 None:intergenic
GCGACAGACGAAACTCTAGC+AGG 0.588210 6_4:-39939377 None:intergenic
GTGGAGATTGGTGTGTTCAA+CGG 0.591351 6_4:-39935025 None:intergenic
TCTATCACAAAATCAAAGAA+GGG 0.593364 6_4:+39939787 Msa0987930:three_prime_UTR
AGATCATTAGGATCATCTCA+GGG 0.599057 6_4:+39935538 Msa0987930:three_prime_UTR
TCTTATTTACAGATGTGTCG+TGG 0.600555 6_4:+39937029 Msa0987930:intron
GGCGCATGAAGGAGGCCAAG+AGG 0.601404 6_4:+39936552 Msa0987930:three_prime_UTR
TGTTGCAAAATGCCCTACAA+AGG 0.603887 6_4:+39938310 Msa0987930:three_prime_UTR
AATGGAAGGACAATAGAAAG+TGG 0.612556 6_4:+39937945 Msa0987930:three_prime_UTR
ACTTGCAGTTCATATTGGCA+TGG 0.614305 6_4:+39938422 Msa0987930:intron
AGGATCATCTCAGGGGTGGA+CGG 0.614978 6_4:+39935546 Msa0987930:three_prime_UTR
TAGCAGCCGCTAAAGTAGCT+GGG 0.615799 6_4:+39937073 Msa0987930:three_prime_UTR
TGATTGATGATAGAGACAAA+CGG 0.617251 6_4:-39935098 None:intergenic
CTTCATTGGTGATCCTCCTG+AGG 0.623430 6_4:+39937385 Msa0987930:three_prime_UTR
AGATCAAACCTCTCCTCAGG+AGG 0.625024 6_4:-39937398 None:intergenic
ACTACATAACTTTACATGGG+AGG 0.625525 6_4:+39939196 Msa0987930:three_prime_UTR
AAGTGTATAGTAACAAAGAG+CGG 0.628437 6_4:+39937099 Msa0987930:three_prime_UTR
CATTAGGATCATCTCAGGGG+TGG 0.630656 6_4:+39935542 Msa0987930:three_prime_UTR
AGCAATTCTCTGTTATATCA+CGG 0.631225 6_4:-39936280 None:intergenic
GGTCGACGGAGGAGACGGCA+AGG 0.637294 6_4:-39934999 None:intergenic
GGAGCAACACTGCACAAATG+TGG 0.643435 6_4:+39936054 Msa0987930:three_prime_UTR
GATTGGTGTGTTCAACGGCG+AGG 0.643453 6_4:-39935020 None:intergenic
TTCAACGGCGAGGTCGACGG+AGG 0.650561 6_4:-39935010 None:intergenic
TGATGGCAAGCAGTCAACAA+AGG 0.657586 6_4:+39937832 Msa0987930:three_prime_UTR
ATATTCGAGTATAAACCAGT+TGG 0.658609 6_4:+39938889 Msa0987930:three_prime_UTR
AGAGGGAGTTCGAAGTACAG+AGG 0.669918 6_4:+39936033 Msa0987930:three_prime_UTR
CTAACTACATAACTTTACAT+GGG 0.671104 6_4:+39939193 Msa0987930:three_prime_UTR
CTATGAGAGAGAGAAATGGA+AGG 0.671735 6_4:+39937931 Msa0987930:three_prime_UTR
CGACGGAGGAGACGGCAAGG+TGG 0.673937 6_4:-39934996 None:intergenic
CGAGCTGCGATTAAATTCAG+GGG 0.681626 6_4:+39935812 Msa0987930:three_prime_UTR
TTATATCACGGACCATGGCG+CGG 0.686056 6_4:-39936268 None:intergenic
AAATGTTTCTGCAAGCTGTG+CGG 0.691119 6_4:-39938285 None:intergenic
TAACTACGAGGATTATTCAG+GGG 0.696814 6_4:+39938770 Msa0987930:three_prime_UTR
CAGGGGATAAGAATTATCAG+AGG 0.706903 6_4:+39938787 Msa0987930:three_prime_UTR
CATCCACCAATACACATGCG+TGG 0.710635 6_4:-39940558 None:intergenic
ACTGAGAAAGAAGAAAACGG+TGG 0.729219 6_4:-39935044 None:intergenic
GATCATTAGGATCATCTCAG+GGG 0.736352 6_4:+39935539 Msa0987930:three_prime_UTR
AGGTTGTGCAGCTAACTACG+AGG 0.761300 6_4:+39938758 Msa0987930:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATATGATTTACTATTTT+AGG + chr6_4:39935617-39935636 Msa0987930:intron 10.0%
!!! TTGTGTAATTAATTTTTTTA+TGG + chr6_4:39935750-39935769 Msa0987930:intron 10.0%
!!! ATAATCTTTTTTATTGTAAT+AGG + chr6_4:39938061-39938080 Msa0987930:intron 10.0%
!! ATATTTAATATTATTGATCA+TGG + chr6_4:39939859-39939878 Msa0987930:intron 10.0%
!!! TTTAATCGATTTAGATTTTT+TGG + chr6_4:39935208-39935227 Msa0987930:intron 15.0%
!!! TTTATTTTTCACTTCATTTT+AGG + chr6_4:39935362-39935381 Msa0987930:intron 15.0%
!!! ACTATTTTTTTCTTTGATTT+TGG + chr6_4:39935581-39935600 Msa0987930:intron 15.0%
!!! AATTTGTATTTGATTTTTGT+AGG + chr6_4:39935668-39935687 Msa0987930:intron 15.0%
!! ACTTCAGTTAAATTAAAAAT+AGG - chr6_4:39936126-39936145 None:intergenic 15.0%
!! TAATTTAACTGAAGTTATTT+AGG + chr6_4:39936131-39936150 Msa0987930:intron 15.0%
!! CTTTGTTCAATTTATTTAAA+TGG + chr6_4:39936429-39936448 Msa0987930:intron 15.0%
!! TTCAATTTATTTAAATGGTT+TGG + chr6_4:39936434-39936453 Msa0987930:intron 15.0%
!!! GATTATTTTGTTTTTTTAGA+TGG + chr6_4:39937773-39937792 Msa0987930:intron 15.0%
!! TCAACTATTTAACATATAAA+TGG - chr6_4:39938112-39938131 None:intergenic 15.0%
!! TCATATATTAATTTCCAAAT+TGG + chr6_4:39938616-39938635 Msa0987930:intron 15.0%
!! ATATTTATACGAAAATGAAA+GGG - chr6_4:39938998-39939017 None:intergenic 15.0%
!! TATATTTATACGAAAATGAA+AGG - chr6_4:39938999-39939018 None:intergenic 15.0%
!! TGATATTATTTACATGAATA+AGG - chr6_4:39940081-39940100 None:intergenic 15.0%
!!! TGAAATGCATATTATTATTT+TGG + chr6_4:39940430-39940449 Msa0987930:intron 15.0%
!!! AAATGGTATTTTCAAATTCA+AGG - chr6_4:39935269-39935288 None:intergenic 20.0%
!! TTGAATTTGAAAATACCATT+TGG + chr6_4:39935268-39935287 Msa0987930:three_prime_UTR 20.0%
!! AAATAAAAACTTGGAAAGAT+AGG - chr6_4:39935349-39935368 None:intergenic 20.0%
!! TGAAGTGAAAAATAAAAACT+TGG - chr6_4:39935358-39935377 None:intergenic 20.0%
!!! TAGTGTAACATTTTAAATTG+TGG + chr6_4:39936245-39936264 Msa0987930:intron 20.0%
!!! AATTTATTTAAATGGTTTGG+TGG + chr6_4:39936437-39936456 Msa0987930:intron 20.0%
!! TCAATTCATTAAAACTATCA+AGG - chr6_4:39936618-39936637 None:intergenic 20.0%
!!! TGATAGTTTTAATGAATTGA+AGG + chr6_4:39936618-39936637 Msa0987930:intron 20.0%
!!! AATAAGTTGCTCTAAAATTT+TGG - chr6_4:39936852-39936871 None:intergenic 20.0%
!!! GTATATTTCTATTTACTGAA+TGG + chr6_4:39937122-39937141 Msa0987930:intron 20.0%
!!! GCAACTTTATGTTTTTTTAT+AGG + chr6_4:39937148-39937167 Msa0987930:intron 20.0%
!! GAAAAGATCAATGTTTATAT+TGG + chr6_4:39937574-39937593 Msa0987930:intron 20.0%
!! TTGTAGTTTATCTAAATTAG+AGG + chr6_4:39938006-39938025 Msa0987930:intron 20.0%
!! CAGGAAGAATTATAATAAAA+TGG - chr6_4:39938172-39938191 None:intergenic 20.0%
!!! CATTTTATTATAATTCTTCC+TGG + chr6_4:39938170-39938189 Msa0987930:intron 20.0%
!! AATTTCCAAATTGGTTAATT+TGG + chr6_4:39938625-39938644 Msa0987930:intron 20.0%
!! TATAACCAAATTAACCAATT+TGG - chr6_4:39938633-39938652 None:intergenic 20.0%
!! TAGGTCAAATTTGAAAAATT+AGG - chr6_4:39939455-39939474 None:intergenic 20.0%
!!! TTTTATATATTGCCTTCATA+TGG + chr6_4:39940110-39940129 Msa0987930:intron 20.0%
!!! GATTTTGTTAAACTAAGAAT+GGG - chr6_4:39940148-39940167 None:intergenic 20.0%
!!! AGATTTTGTTAAACTAAGAA+TGG - chr6_4:39940149-39940168 None:intergenic 20.0%
!! TTAGTTTAACAAAATCTAAC+TGG + chr6_4:39940152-39940171 Msa0987930:intron 20.0%
!! TCAAAACAAAATATAGTCAA+TGG - chr6_4:39940850-39940869 None:intergenic 20.0%
! ACAAAATTGCACCAAAAAAT+GGG - chr6_4:39935159-39935178 None:intergenic 25.0%
! AACAAAATTGCACCAAAAAA+TGG - chr6_4:39935160-39935179 None:intergenic 25.0%
! TTTGTTCTTCTAATTGATTG+AGG + chr6_4:39935174-39935193 Msa0987930:intron 25.0%
!!! TAGATTTTTTGGTATGTCTT+TGG + chr6_4:39935219-39935238 Msa0987930:intron 25.0%
! ATATGGGTAAGTTTCAATTT+GGG + chr6_4:39935301-39935320 Msa0987930:intron 25.0%
!!! TTGTATTTGATTTTTGTAGG+TGG + chr6_4:39935671-39935690 Msa0987930:intron 25.0%
!! TTATGATGATGATCTTAAAC+AGG + chr6_4:39935868-39935887 Msa0987930:three_prime_UTR 25.0%
!! AAATCAATGTTTTCTCAAGA+GGG + chr6_4:39936016-39936035 Msa0987930:three_prime_UTR 25.0%
! ATATTGAAACATCATGTATC+TGG + chr6_4:39936216-39936235 Msa0987930:intron 25.0%
! AAAGAAAATGAATAGAAAGG+AGG - chr6_4:39936347-39936366 None:intergenic 25.0%
! AGGAAAGAAAATGAATAGAA+AGG - chr6_4:39936350-39936369 None:intergenic 25.0%
!! TTTCTATTCATTTTCTTTCC+TGG + chr6_4:39936349-39936368 Msa0987930:intron 25.0%
! TTGAACAAAGTTATTGTATC+AGG - chr6_4:39936419-39936438 None:intergenic 25.0%
! GAATTGAAGGATATAGATTA+TGG + chr6_4:39936631-39936650 Msa0987930:intron 25.0%
! AACCTATCTGATACTTTATT+TGG + chr6_4:39936918-39936937 Msa0987930:intron 25.0%
!! ATCCAAATAAAGTATCAGAT+AGG - chr6_4:39936923-39936942 None:intergenic 25.0%
!!! AATTTTGTTTTTGAACTGCA+TGG + chr6_4:39936972-39936991 Msa0987930:intron 25.0%
!!! TTTTCATCATTGGCTTAATA+GGG - chr6_4:39937559-39937578 None:intergenic 25.0%
!! AACATTGATCTTTTCATCAT+TGG - chr6_4:39937569-39937588 None:intergenic 25.0%
! TTGATGCTAATTAATGTTGT+TGG + chr6_4:39937714-39937733 Msa0987930:intron 25.0%
! AATTTAACAGTTGCTTATTC+TGG + chr6_4:39937857-39937876 Msa0987930:three_prime_UTR 25.0%
! ATTTAACAGTTGCTTATTCT+GGG + chr6_4:39937858-39937877 Msa0987930:three_prime_UTR 25.0%
!!! GTTGACTTTTGTATTTTATC+AGG + chr6_4:39938242-39938261 Msa0987930:intron 25.0%
! AACGATTATATACCTTTGTA+GGG - chr6_4:39938325-39938344 None:intergenic 25.0%
! TGGATCATTGTTTCATAATT+TGG + chr6_4:39938572-39938591 Msa0987930:intron 25.0%
! TTACGAGTTACTATTGTTTA+TGG + chr6_4:39938728-39938747 Msa0987930:three_prime_UTR 25.0%
! AGTTACTATTGTTTATGGAA+TGG + chr6_4:39938733-39938752 Msa0987930:three_prime_UTR 25.0%
!!! AAGAGAAAAAGGTTTTGATT+TGG + chr6_4:39938948-39938967 Msa0987930:three_prime_UTR 25.0%
! TTCGTATAAATATAGAGCAT+TGG + chr6_4:39939005-39939024 Msa0987930:three_prime_UTR 25.0%
! ATGTAGTTAGATAAGTTTCT+AGG + chr6_4:39939063-39939082 Msa0987930:three_prime_UTR 25.0%
!!! TATTAGAGCTTTTTTAACCA+TGG + chr6_4:39939167-39939186 Msa0987930:three_prime_UTR 25.0%
! CTAACTACATAACTTTACAT+GGG + chr6_4:39939193-39939212 Msa0987930:three_prime_UTR 25.0%
! AGTATCAATGCTACATATAT+AGG - chr6_4:39939474-39939493 None:intergenic 25.0%
! TCTATCACAAAATCAAAGAA+GGG + chr6_4:39939787-39939806 Msa0987930:three_prime_UTR 25.0%
! CTTTGATATATTTCAAGACA+TGG + chr6_4:39940188-39940207 Msa0987930:intron 25.0%
! AGATTTATGCATCCATTATA+AGG - chr6_4:39940243-39940262 None:intergenic 25.0%
! ACAAGATGAAAAAATTAACG+CGG - chr6_4:39940484-39940503 None:intergenic 25.0%
! TGAACTAATGTTATGTTCAA+AGG + chr6_4:39940744-39940763 Msa0987930:three_prime_UTR 25.0%
!!! TGTTCAAAGGTATTTAGAAA+AGG + chr6_4:39940757-39940776 Msa0987930:three_prime_UTR 25.0%
!! TAAGGTTAGTTAAACAATAG+AGG - chr6_4:39940799-39940818 None:intergenic 25.0%
! ACAAAATATAGTCAATGGAA+AGG - chr6_4:39940845-39940864 None:intergenic 25.0%
! TGATTGATGATAGAGACAAA+CGG - chr6_4:39935101-39935120 None:intergenic 30.0%
TTGTCTCTATCATCAATCAA+AGG + chr6_4:39935102-39935121 Msa0987930:CDS 30.0%
TTTGAAAATACCATTTGGCA+TGG + chr6_4:39935273-39935292 Msa0987930:three_prime_UTR 30.0%
GATATGGGTAAGTTTCAATT+TGG + chr6_4:39935300-39935319 Msa0987930:intron 30.0%
! TTTCAATTTGGGATGTTACT+GGG + chr6_4:39935312-39935331 Msa0987930:intron 30.0%
CAGCAATAGAGAAAATCAAA+AGG - chr6_4:39935463-39935482 None:intergenic 30.0%
! AGGCTCTGATATTCAAAATT+TGG - chr6_4:39935787-39935806 None:intergenic 30.0%
TTGATGAATGTGAAACTAGA+TGG + chr6_4:39935912-39935931 Msa0987930:intron 30.0%
! CAAATCAATGTTTTCTCAAG+AGG + chr6_4:39936015-39936034 Msa0987930:three_prime_UTR 30.0%
AGCAATTCTCTGTTATATCA+CGG - chr6_4:39936283-39936302 None:intergenic 30.0%
AAAAGTTAATGTATCAGAGC+TGG - chr6_4:39936395-39936414 None:intergenic 30.0%
! TAAACAACTTCCTGATGTTT+TGG - chr6_4:39936478-39936497 None:intergenic 30.0%
AAACATCAGGAAGTTGTTTA+AGG + chr6_4:39936478-39936497 Msa0987930:three_prime_UTR 30.0%
!! CAAATCTCTGTTAGTTTGTA+AGG + chr6_4:39936654-39936673 Msa0987930:intron 30.0%
! AAATTCTACTGTTGGTGAAT+AGG - chr6_4:39936812-39936831 None:intergenic 30.0%
! TCACCAACAGTAGAATTTTA+TGG + chr6_4:39936814-39936833 Msa0987930:intron 30.0%
ATGCCATAAAATTCTACTGT+TGG - chr6_4:39936820-39936839 None:intergenic 30.0%
AAGTGTATAGTAACAAAGAG+CGG + chr6_4:39937099-39937118 Msa0987930:three_prime_UTR 30.0%
! AGTAAGTTATGTTAGTTTCC+CGG + chr6_4:39937179-39937198 Msa0987930:intron 30.0%
TAATCTCAAATGCATTATGC+AGG + chr6_4:39937318-39937337 Msa0987930:intron 30.0%
AAATGCATTATGCAGGTATA+CGG + chr6_4:39937325-39937344 Msa0987930:intron 30.0%
! TGACATATTGCTTCTAAAGA+AGG - chr6_4:39937439-39937458 None:intergenic 30.0%
!!! CTTTTCATCATTGGCTTAAT+AGG - chr6_4:39937560-39937579 None:intergenic 30.0%
! TGATTTTCTGATTCTGATTC+TGG + chr6_4:39937746-39937765 Msa0987930:intron 30.0%
! GATTTTCTGATTCTGATTCT+GGG + chr6_4:39937747-39937766 Msa0987930:intron 30.0%
TTAGATGGACAATGAATTTG+AGG + chr6_4:39937788-39937807 Msa0987930:intron 30.0%
TTTACTATGAGAGAGAGAAA+TGG + chr6_4:39937927-39937946 Msa0987930:three_prime_UTR 30.0%
GAACGATTATATACCTTTGT+AGG - chr6_4:39938326-39938345 None:intergenic 30.0%
TTTCAGAACTTACCTCTTAA+GGG - chr6_4:39938491-39938510 None:intergenic 30.0%
TGATAGCTTATGAAAGTTAC+TGG - chr6_4:39938599-39938618 None:intergenic 30.0%
TTGCTTCTACAGACAAAAAT+GGG - chr6_4:39938815-39938834 None:intergenic 30.0%
ATTGCTTCTACAGACAAAAA+TGG - chr6_4:39938816-39938835 None:intergenic 30.0%
ATATTCGAGTATAAACCAGT+TGG + chr6_4:39938889-39938908 Msa0987930:three_prime_UTR 30.0%
!! TAGAGCATTGGAAAAATTTG+AGG + chr6_4:39939017-39939036 Msa0987930:three_prime_UTR 30.0%
ATTTGAGGAGAAGCAAATAA+AGG + chr6_4:39939032-39939051 Msa0987930:three_prime_UTR 30.0%
GCTAACTACATAACTTTACA+TGG + chr6_4:39939192-39939211 Msa0987930:three_prime_UTR 30.0%
TAGAATTCAGAAGAAGAATC+AGG + chr6_4:39939254-39939273 Msa0987930:intron 30.0%
CACGTGTTAGTAAATACAAT+TGG + chr6_4:39939659-39939678 Msa0987930:intron 30.0%
GTCTATCACAAAATCAAAGA+AGG + chr6_4:39939786-39939805 Msa0987930:three_prime_UTR 30.0%
ATGTTCTTGATACCATATGA+AGG - chr6_4:39940125-39940144 None:intergenic 30.0%
AATTCTACTTATAAGGCCTT+AGG - chr6_4:39940291-39940310 None:intergenic 30.0%
GCTGCATAATTCTACTTATA+AGG - chr6_4:39940298-39940317 None:intergenic 30.0%
CTATATGCTCATGCTATATA+AGG - chr6_4:39940385-39940404 None:intergenic 30.0%
AATGATACATGATCGAACTA+TGG - chr6_4:39940457-39940476 None:intergenic 30.0%
!!! TCATCTTGTTTTGTAGATGA+TGG + chr6_4:39940495-39940514 Msa0987930:intron 30.0%
!! TACACCTGTGTTTTTAATGT+TGG + chr6_4:39940612-39940631 Msa0987930:three_prime_UTR 30.0%
GATACCAACATTAAAAACAC+AGG - chr6_4:39940619-39940638 None:intergenic 30.0%
TAAACAATAGAGGACATCAA+TGG - chr6_4:39940789-39940808 None:intergenic 30.0%
! TTGGTGAGTATTGTGAAATA+AGG - chr6_4:39940817-39940836 None:intergenic 30.0%
!!! GTTTTTTTGTTTACCGTGTG+AGG - chr6_4:39934963-39934982 None:intergenic 35.0%
CACACTGAGAAAGAAGAAAA+CGG - chr6_4:39935050-39935069 None:intergenic 35.0%
! TTTTCTTCTTTCTCAGTGTG+CGG + chr6_4:39935050-39935069 Msa0987930:CDS 35.0%
CTCTATCATCAATCAAAGGT+TGG + chr6_4:39935106-39935125 Msa0987930:intron 35.0%
ATTTGGCATGGATCAGATAT+GGG + chr6_4:39935285-39935304 Msa0987930:three_prime_UTR 35.0%
! GTTTCAATTTGGGATGTTAC+TGG + chr6_4:39935311-39935330 Msa0987930:intron 35.0%
CAAAAGTCCTACAGATCATT+AGG + chr6_4:39935526-39935545 Msa0987930:three_prime_UTR 35.0%
AGATGATCCTAATGATCTGT+AGG - chr6_4:39935536-39935555 None:intergenic 35.0%
AGATCATTAGGATCATCTCA+GGG + chr6_4:39935538-39935557 Msa0987930:three_prime_UTR 35.0%
!!! TAGGTTCTCACTTTTTACCA+AGG - chr6_4:39936107-39936126 None:intergenic 35.0%
CTTACCAACAAAATTGTGCA+CGG + chr6_4:39936159-39936178 Msa0987930:intron 35.0%
! TAAACCGTGCACAATTTTGT+TGG - chr6_4:39936166-39936185 None:intergenic 35.0%
! GTGCACGGTTTAGTTTATAT+TGG + chr6_4:39936174-39936193 Msa0987930:intron 35.0%
CATTACATGATGCAATCTAC+AGG + chr6_4:39936304-39936323 Msa0987930:three_prime_UTR 35.0%
! CTATTCATTTTCTTTCCTGG+AGG + chr6_4:39936352-39936371 Msa0987930:intron 35.0%
ATCAGGAAGTTGTTTAAGGA+TGG + chr6_4:39936482-39936501 Msa0987930:three_prime_UTR 35.0%
TTAAGGATGGCTTCATTATC+AGG + chr6_4:39936495-39936514 Msa0987930:three_prime_UTR 35.0%
!! ATCTCTGTTAGTTTGTAAGG+TGG + chr6_4:39936657-39936676 Msa0987930:intron 35.0%
TTAGTTGTGCTGAGTATTCT+AGG + chr6_4:39936760-39936779 Msa0987930:intron 35.0%
! TCAACCCTATTTGAAGTGTA+TGG + chr6_4:39936873-39936892 Msa0987930:intron 35.0%
CACTCCATACACTTCAAATA+GGG - chr6_4:39936880-39936899 None:intergenic 35.0%
! TCTTATTTACAGATGTGTCG+TGG + chr6_4:39937029-39937048 Msa0987930:intron 35.0%
AGTGTATAGTAACAAAGAGC+GGG + chr6_4:39937100-39937119 Msa0987930:three_prime_UTR 35.0%
! GACGTTGTATTTGACTTCAT+TGG + chr6_4:39937371-39937390 Msa0987930:three_prime_UTR 35.0%
!! AGCACTGATAGAAATAGTGA+AGG - chr6_4:39937510-39937529 None:intergenic 35.0%
GGTAAGAGTGAAAAGAAATG+AGG - chr6_4:39937538-39937557 None:intergenic 35.0%
ATGGACAATGAATTTGAGGA+TGG + chr6_4:39937792-39937811 Msa0987930:three_prime_UTR 35.0%
ACAAGCAACTTCTGATATGA+TGG + chr6_4:39937815-39937834 Msa0987930:three_prime_UTR 35.0%
TGTGATTTCAGTCCTTTATC+TGG + chr6_4:39937898-39937917 Msa0987930:three_prime_UTR 35.0%
ATTTCAGTCCTTTATCTGGA+AGG + chr6_4:39937902-39937921 Msa0987930:three_prime_UTR 35.0%
AGTAAACACCTTCCAGATAA+AGG - chr6_4:39937913-39937932 None:intergenic 35.0%
AATGGAAGGACAATAGAAAG+TGG + chr6_4:39937945-39937964 Msa0987930:three_prime_UTR 35.0%
TTCCTGGATCTCTTCATTTA+TGG + chr6_4:39938186-39938205 Msa0987930:intron 35.0%
! CTTGTCATTTGTCCAATGAT+CGG + chr6_4:39938355-39938374 Msa0987930:intron 35.0%
ATTTGTCCAATGATCGGAAA+TGG + chr6_4:39938361-39938380 Msa0987930:intron 35.0%
GATATTCCATTTCCGATCAT+TGG - chr6_4:39938370-39938389 None:intergenic 35.0%
ATTGCACTTGCAGTTCATAT+TGG + chr6_4:39938417-39938436 Msa0987930:intron 35.0%
GTTTCAGAACTTACCTCTTA+AGG - chr6_4:39938492-39938511 None:intergenic 35.0%
ACAATGATCCATCAGTAAGT+AGG - chr6_4:39938563-39938582 None:intergenic 35.0%
CTATTGTTTATGGAATGGCT+AGG + chr6_4:39938738-39938757 Msa0987930:three_prime_UTR 35.0%
CTAACTACGAGGATTATTCA+GGG + chr6_4:39938769-39938788 Msa0987930:three_prime_UTR 35.0%
TAACTACGAGGATTATTCAG+GGG + chr6_4:39938770-39938789 Msa0987930:three_prime_UTR 35.0%
TGCTTCTACAGACAAAAATG+GGG - chr6_4:39938814-39938833 None:intergenic 35.0%
TGCAATATGGGAAGAGAAAA+AGG + chr6_4:39938937-39938956 Msa0987930:three_prime_UTR 35.0%
! ACCTGATTGTTTAGAGTTGA+AGG + chr6_4:39939098-39939117 Msa0987930:three_prime_UTR 35.0%
! ATTGTTTAGAGTTGAAGGCT+TGG + chr6_4:39939103-39939122 Msa0987930:three_prime_UTR 35.0%
!!! TAGAGCTTTTTTAACCATGG+AGG + chr6_4:39939170-39939189 Msa0987930:three_prime_UTR 35.0%
ACTACATAACTTTACATGGG+AGG + chr6_4:39939196-39939215 Msa0987930:three_prime_UTR 35.0%
ACTTTACATGGGAGGATTAA+AGG + chr6_4:39939204-39939223 Msa0987930:three_prime_UTR 35.0%
GGATGCAGTTATAACAACAA+TGG + chr6_4:39939286-39939305 Msa0987930:intron 35.0%
!! TGGTATTCAGTTGATGATGT+TGG + chr6_4:39939306-39939325 Msa0987930:intron 35.0%
!! AGTTGATGATGTTGGTTCTT+TGG + chr6_4:39939314-39939333 Msa0987930:intron 35.0%
GAACAGATTAAACTGTCAGA+AGG + chr6_4:39939720-39939739 Msa0987930:intron 35.0%
CTGACTAAGATGAACATGTT+TGG + chr6_4:39939905-39939924 Msa0987930:three_prime_UTR 35.0%
TTCACCTTTGCTTAGTTTCA+AGG + chr6_4:39940002-39940021 Msa0987930:intron 35.0%
GAAATGCATAACAGAAACTG+TGG + chr6_4:39940210-39940229 Msa0987930:intron 35.0%
ATGAGCATATAGATCAGTAG+TGG + chr6_4:39940393-39940412 Msa0987930:intron 35.0%
!!! CTTGTTTTGTAGATGATGGT+AGG + chr6_4:39940499-39940518 Msa0987930:intron 35.0%
AACCAACTGTTGCAGATATT+AGG - chr6_4:39940525-39940544 None:intergenic 35.0%
AAAAAACCACGCATGTGTAT+TGG + chr6_4:39940552-39940571 Msa0987930:three_prime_UTR 35.0%
AGCAATAATGCCAACAAGAT+TGG + chr6_4:39940684-39940703 Msa0987930:three_prime_UTR 35.0%
AATGATTGTGCCAATCTTGT+TGG - chr6_4:39940697-39940716 None:intergenic 35.0%
AAGAAGAAAACGGTGGAGAT+TGG - chr6_4:39935040-39935059 None:intergenic 40.0%
ACTGAGAAAGAAGAAAACGG+TGG - chr6_4:39935047-39935066 None:intergenic 40.0%
!!! TGCTTGCATGTCCCATTTTT+TGG + chr6_4:39935145-39935164 Msa0987930:intron 40.0%
CATATCTGATCCATGCCAAA+TGG - chr6_4:39935286-39935305 None:intergenic 40.0%
CATTTGGCATGGATCAGATA+TGG + chr6_4:39935284-39935303 Msa0987930:three_prime_UTR 40.0%
CAGATCATTAGGATCATCTC+AGG + chr6_4:39935537-39935556 Msa0987930:three_prime_UTR 40.0%
GATCATTAGGATCATCTCAG+GGG + chr6_4:39935539-39935558 Msa0987930:three_prime_UTR 40.0%
TTTAATCGCAGCTCGATCAT+AGG - chr6_4:39935807-39935826 None:intergenic 40.0%
ATCGAGCTGCGATTAAATTC+AGG + chr6_4:39935810-39935829 Msa0987930:three_prime_UTR 40.0%
TCGAGCTGCGATTAAATTCA+GGG + chr6_4:39935811-39935830 Msa0987930:three_prime_UTR 40.0%
TGATGCAATCTACAGGATGA+TGG + chr6_4:39936311-39936330 Msa0987930:three_prime_UTR 40.0%
! TTTTCTTTCCTGGAGGATGA+TGG + chr6_4:39936359-39936378 Msa0987930:intron 40.0%
AATGTATCAGAGCTGGAACA+GGG - chr6_4:39936388-39936407 None:intergenic 40.0%
TAATGTATCAGAGCTGGAAC+AGG - chr6_4:39936389-39936408 None:intergenic 40.0%
GATAGGGAGTGAATCTTAGT+TGG - chr6_4:39936524-39936543 None:intergenic 40.0%
AAGGGACGTCATTCTAGATA+TGG + chr6_4:39936575-39936594 Msa0987930:three_prime_UTR 40.0%
GCACTCCATACACTTCAAAT+AGG - chr6_4:39936881-39936900 None:intergenic 40.0%
AGAGATCTCGAATTTGATCC+GGG - chr6_4:39937200-39937219 None:intergenic 40.0%
CAGAGATCTCGAATTTGATC+CGG - chr6_4:39937201-39937220 None:intergenic 40.0%
! AGGTTTGATCTGGCATTTTG+TGG + chr6_4:39937410-39937429 Msa0987930:intron 40.0%
TAGCAAACTGTGAAGTGATG+AGG + chr6_4:39937461-39937480 Msa0987930:intron 40.0%
TCATTCGTGGAGCAAATTAC+AGG - chr6_4:39937671-39937690 None:intergenic 40.0%
CTATGAGAGAGAGAAATGGA+AGG + chr6_4:39937931-39937950 Msa0987930:three_prime_UTR 40.0%
TGCCATAAATGAAGAGATCC+AGG - chr6_4:39938191-39938210 None:intergenic 40.0%
! AAATGTTTCTGCAAGCTGTG+CGG - chr6_4:39938288-39938307 None:intergenic 40.0%
TGTTGCAAAATGCCCTACAA+AGG + chr6_4:39938310-39938329 Msa0987930:three_prime_UTR 40.0%
ACTTGCAGTTCATATTGGCA+TGG + chr6_4:39938422-39938441 Msa0987930:intron 40.0%
GCAAAATCAGGCTCTACTAT+TGG + chr6_4:39938454-39938473 Msa0987930:three_prime_UTR 40.0%
!! GCATTGATTCTTCCCTTAAG+AGG + chr6_4:39938476-39938495 Msa0987930:three_prime_UTR 40.0%
GCTAACTACGAGGATTATTC+AGG + chr6_4:39938768-39938787 Msa0987930:three_prime_UTR 40.0%
CAGGGGATAAGAATTATCAG+AGG + chr6_4:39938787-39938806 Msa0987930:three_prime_UTR 40.0%
TCGAGTATAAACCAGTTGGT+TGG + chr6_4:39938893-39938912 Msa0987930:three_prime_UTR 40.0%
TCTTGATACATCCAACCAAC+TGG - chr6_4:39938907-39938926 None:intergenic 40.0%
!! AGAGAGAGCATTGTGCAATA+TGG + chr6_4:39938924-39938943 Msa0987930:three_prime_UTR 40.0%
!! GAGAGAGCATTGTGCAATAT+GGG + chr6_4:39938925-39938944 Msa0987930:three_prime_UTR 40.0%
GCCTTCAACTCTAAACAATC+AGG - chr6_4:39939102-39939121 None:intergenic 40.0%
! AGTTATGTAGTTAGCCTCCA+TGG - chr6_4:39939187-39939206 None:intergenic 40.0%
GAGGATTAAAGGTAAGTGCT+TGG + chr6_4:39939215-39939234 Msa0987930:intron 40.0%
!! AGAAGAATCAGGTTGACTGT+TGG + chr6_4:39939265-39939284 Msa0987930:intron 40.0%
ACTCTTGAGGTAAGCATCTT+CGG + chr6_4:39939404-39939423 Msa0987930:intron 40.0%
AGATACTTGCCTGATTCTAC+CGG + chr6_4:39939751-39939770 Msa0987930:three_prime_UTR 40.0%
GATAGACTTGCAGTATTTGC+CGG - chr6_4:39939773-39939792 None:intergenic 40.0%
! GAGAGCATGGTATGTAATCT+TGG + chr6_4:39939961-39939980 Msa0987930:intron 40.0%
CATGCCTTGAAACTAAGCAA+AGG - chr6_4:39940009-39940028 None:intergenic 40.0%
GTAATACAGCTCTTTGCCTA+AGG + chr6_4:39940272-39940291 Msa0987930:intron 40.0%
AGTCAATGGAAAGGAGTCAT+TGG - chr6_4:39940836-39940855 None:intergenic 40.0%
GTGGAGATTGGTGTGTTCAA+CGG - chr6_4:39935028-39935047 None:intergenic 45.0%
CGAGCTGCGATTAAATTCAG+GGG + chr6_4:39935812-39935831 Msa0987930:three_prime_UTR 45.0%
GCGATTAAATTCAGGGGAGT+TGG + chr6_4:39935818-39935837 Msa0987930:three_prime_UTR 45.0%
ACTGCACAAATGTGGCAGTT+GGG + chr6_4:39936062-39936081 Msa0987930:three_prime_UTR 45.0%
CTCTGTTATATCACGGACCA+TGG - chr6_4:39936276-39936295 None:intergenic 45.0%
TCTTTGCAGGCCAAAACATC+AGG + chr6_4:39936465-39936484 Msa0987930:intron 45.0%
! CTTCATCCCAGCTACTTTAG+CGG - chr6_4:39937082-39937101 None:intergenic 45.0%
TTAGAAGTCCCACACTACGA+AGG - chr6_4:39937267-39937286 None:intergenic 45.0%
TTATGCAGGTATACGGCAGA+TGG + chr6_4:39937332-39937351 Msa0987930:intron 45.0%
CAGAGAAGCTAACTCATTCG+TGG - chr6_4:39937684-39937703 None:intergenic 45.0%
TGATGGCAAGCAGTCAACAA+AGG + chr6_4:39937832-39937851 Msa0987930:three_prime_UTR 45.0%
TGGCAGCAAAGTGCAAAATC+AGG + chr6_4:39938442-39938461 Msa0987930:three_prime_UTR 45.0%
TGCAGAAGCCTACTTACTGA+TGG + chr6_4:39938552-39938571 Msa0987930:intron 45.0%
CTGAAAGCAGGAACGAAAAG+AGG - chr6_4:39938689-39938708 None:intergenic 45.0%
TTCCTGCTTTCAGCTATGAG+AGG + chr6_4:39938696-39938715 Msa0987930:intron 45.0%
TCCTGCTTTCAGCTATGAGA+GGG + chr6_4:39938697-39938716 Msa0987930:intron 45.0%
ATCGACATGATTCTCACACG+TGG + chr6_4:39939523-39939542 Msa0987930:intron 45.0%
CAGTATTTGCCGGTAGAATC+AGG - chr6_4:39939763-39939782 None:intergenic 45.0%
TGTGGCGCGAATCCTTATAA+TGG + chr6_4:39940228-39940247 Msa0987930:intron 45.0%
GGCCTAATATCTGCAACAGT+TGG + chr6_4:39940520-39940539 Msa0987930:three_prime_UTR 45.0%
AAACCACGCATGTGTATTGG+TGG + chr6_4:39940555-39940574 Msa0987930:three_prime_UTR 45.0%
CATTAGGATCATCTCAGGGG+TGG + chr6_4:39935542-39935561 Msa0987930:three_prime_UTR 50.0%
ACACAGCTCATGTTGCTGCT+AGG + chr6_4:39935699-39935718 Msa0987930:three_prime_UTR 50.0%
AGAGGGAGTTCGAAGTACAG+AGG + chr6_4:39936033-39936052 Msa0987930:three_prime_UTR 50.0%
GGAGCAACACTGCACAAATG+TGG + chr6_4:39936054-39936073 Msa0987930:three_prime_UTR 50.0%
CACTGCACAAATGTGGCAGT+TGG + chr6_4:39936061-39936080 Msa0987930:three_prime_UTR 50.0%
GCTCGAATGGGTCAATTCCT+TGG + chr6_4:39936087-39936106 Msa0987930:three_prime_UTR 50.0%
TTTAAATTGTGGCCGCGCCA+TGG + chr6_4:39936256-39936275 Msa0987930:three_prime_UTR 50.0%
TTATATCACGGACCATGGCG+CGG - chr6_4:39936271-39936290 None:intergenic 50.0%
! TTTGGTGGCTCTCTCTTTGC+AGG + chr6_4:39936452-39936471 Msa0987930:intron 50.0%
ATGAAGGAGGCCAAGAGGAA+GGG + chr6_4:39936557-39936576 Msa0987930:three_prime_UTR 50.0%
AGAATGACGTCCCTTCCTCT+TGG - chr6_4:39936570-39936589 None:intergenic 50.0%
TTACAGATGTGTCGTGGTCG+AGG + chr6_4:39937035-39937054 Msa0987930:intron 50.0%
TAGCAGCCGCTAAAGTAGCT+GGG + chr6_4:39937073-39937092 Msa0987930:three_prime_UTR 50.0%
GGTGAGCTAAGGGACATTGA+AGG - chr6_4:39937234-39937253 None:intergenic 50.0%
! CTTCATTGGTGATCCTCCTG+AGG + chr6_4:39937385-39937404 Msa0987930:three_prime_UTR 50.0%
AGATCAAACCTCTCCTCAGG+AGG - chr6_4:39937401-39937420 None:intergenic 50.0%
TCCTGAGGAGAGGTTTGATC+TGG + chr6_4:39937400-39937419 Msa0987930:intron 50.0%
TCCCTCTCATAGCTGAAAGC+AGG - chr6_4:39938701-39938720 None:intergenic 50.0%
AGGTTGTGCAGCTAACTACG+AGG + chr6_4:39938758-39938777 Msa0987930:three_prime_UTR 50.0%
CAGATGCTAGAGAATGAGCC+TGG + chr6_4:39939348-39939367 Msa0987930:intron 50.0%
AACTCTAGCAGGCTCTTTCC+AGG - chr6_4:39939369-39939388 None:intergenic 50.0%
GTCTGTCGCTACTACTCTTG+AGG + chr6_4:39939391-39939410 Msa0987930:three_prime_UTR 50.0%
CATCCACCAATACACATGCG+TGG - chr6_4:39940561-39940580 None:intergenic 50.0%
CCGTGTGAGGAGAAGAGAAC+CGG - chr6_4:39934950-39934969 None:intergenic 55.0%
CCGGTTCTCTTCTCCTCACA+CGG + chr6_4:39934947-39934966 Msa0987930:CDS 55.0%
GATTGGTGTGTTCAACGGCG+AGG - chr6_4:39935023-39935042 None:intergenic 55.0%
AGGATCATCTCAGGGGTGGA+CGG + chr6_4:39935546-39935565 Msa0987930:three_prime_UTR 55.0%
TGGCAGTTGGGAAGCTCGAA+TGG + chr6_4:39936074-39936093 Msa0987930:three_prime_UTR 55.0%
GGCAGTTGGGAAGCTCGAAT+GGG + chr6_4:39936075-39936094 Msa0987930:three_prime_UTR 55.0%
CAGGGTAACCATCATCCTCC+AGG - chr6_4:39936370-39936389 None:intergenic 55.0%
TTCACTCCCTATCCTGTGCC+AGG + chr6_4:39936531-39936550 Msa0987930:three_prime_UTR 55.0%
CATGAAGGAGGCCAAGAGGA+AGG + chr6_4:39936556-39936575 Msa0987930:three_prime_UTR 55.0%
CTAGCAGCCGCTAAAGTAGC+TGG + chr6_4:39937072-39937091 Msa0987930:three_prime_UTR 55.0%
!! CAGCTCGGTTGGTGAGCTAA+GGG - chr6_4:39937244-39937263 None:intergenic 55.0%
! TTGGTGATCCTCCTGAGGAG+AGG + chr6_4:39937390-39937409 Msa0987930:three_prime_UTR 55.0%
GCCAGATCAAACCTCTCCTC+AGG - chr6_4:39937404-39937423 None:intergenic 55.0%
GCGACAGACGAAACTCTAGC+AGG - chr6_4:39939380-39939399 None:intergenic 55.0%
GTGTTCAACGGCGAGGTCGA+CGG - chr6_4:39935016-39935035 None:intergenic 60.0%
CATGCGCCTGGCACAGGATA+GGG - chr6_4:39936540-39936559 None:intergenic 60.0%
TCATGCGCCTGGCACAGGAT+AGG - chr6_4:39936541-39936560 None:intergenic 60.0%
ATCCTGTGCCAGGCGCATGA+AGG + chr6_4:39936541-39936560 Msa0987930:three_prime_UTR 60.0%
GTGGTCGAGGACAGCGCTAT+AGG + chr6_4:39937048-39937067 Msa0987930:three_prime_UTR 60.0%
!! GCAGCTCGGTTGGTGAGCTA+AGG - chr6_4:39937245-39937264 None:intergenic 60.0%
CACTACGAAGGCAGCTCGGT+TGG - chr6_4:39937255-39937274 None:intergenic 60.0%
ACCGAGCTGCCTTCGTAGTG+TGG + chr6_4:39937255-39937274 Msa0987930:intron 60.0%
CCCACACTACGAAGGCAGCT+CGG - chr6_4:39937259-39937278 None:intergenic 60.0%
CCGAGCTGCCTTCGTAGTGT+GGG + chr6_4:39937256-39937275 Msa0987930:intron 60.0%
GCACATGGCGTTCGAGAGCA+TGG + chr6_4:39939948-39939967 Msa0987930:three_prime_UTR 60.0%
TTCAACGGCGAGGTCGACGG+AGG - chr6_4:39935013-39935032 None:intergenic 65.0%
CTCCTTCATGCGCCTGGCAC+AGG - chr6_4:39936546-39936565 None:intergenic 65.0%
CTGTGCCAGGCGCATGAAGG+AGG + chr6_4:39936544-39936563 Msa0987930:three_prime_UTR 65.0%
CTTGGCCTCCTTCATGCGCC+TGG - chr6_4:39936552-39936571 None:intergenic 65.0%
GGCGCATGAAGGAGGCCAAG+AGG + chr6_4:39936552-39936571 Msa0987930:three_prime_UTR 65.0%
! GACGGCAAGGTGGCGGTGTG+AGG - chr6_4:39934989-39935008 None:intergenic 70.0%
CGGAGGAGACGGCAAGGTGG+CGG - chr6_4:39934996-39935015 None:intergenic 70.0%
CGACGGAGGAGACGGCAAGG+TGG - chr6_4:39934999-39935018 None:intergenic 70.0%
GGTCGACGGAGGAGACGGCA+AGG - chr6_4:39935002-39935021 None:intergenic 70.0%
GGCGAGGTCGACGGAGGAGA+CGG - chr6_4:39935007-39935026 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 39934941 39940882 39934941 ID=Msa0987930;Name=Msa0987930
chr6_4 mRNA 39934941 39940882 39934941 ID=Msa0987930-mRNA-1;Parent=Msa0987930;Name=Msa0987930-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|1|0.94|1|0.23|0.33|18|2161|62
chr6_4 exon 39934941 39935123 39934941 ID=Msa0987930-mRNA-1:exon:9707;Parent=Msa0987930-mRNA-1
chr6_4 exon 39935252 39935306 39935252 ID=Msa0987930-mRNA-1:exon:9708;Parent=Msa0987930-mRNA-1
chr6_4 exon 39935512 39935567 39935512 ID=Msa0987930-mRNA-1:exon:9709;Parent=Msa0987930-mRNA-1
chr6_4 exon 39935690 39935720 39935690 ID=Msa0987930-mRNA-1:exon:9710;Parent=Msa0987930-mRNA-1
chr6_4 exon 39935802 39935889 39935802 ID=Msa0987930-mRNA-1:exon:9711;Parent=Msa0987930-mRNA-1
chr6_4 exon 39935972 39936115 39935972 ID=Msa0987930-mRNA-1:exon:9712;Parent=Msa0987930-mRNA-1
chr6_4 exon 39936248 39936332 39936248 ID=Msa0987930-mRNA-1:exon:9713;Parent=Msa0987930-mRNA-1
chr6_4 exon 39936474 39936596 39936474 ID=Msa0987930-mRNA-1:exon:9714;Parent=Msa0987930-mRNA-1
chr6_4 exon 39937041 39937121 39937041 ID=Msa0987930-mRNA-1:exon:9715;Parent=Msa0987930-mRNA-1
chr6_4 exon 39937340 39937411 39937340 ID=Msa0987930-mRNA-1:exon:9716;Parent=Msa0987930-mRNA-1
chr6_4 exon 39937792 39937984 39937792 ID=Msa0987930-mRNA-1:exon:9717;Parent=Msa0987930-mRNA-1
chr6_4 exon 39938264 39938331 39938264 ID=Msa0987930-mRNA-1:exon:9718;Parent=Msa0987930-mRNA-1
chr6_4 exon 39938430 39938497 39938430 ID=Msa0987930-mRNA-1:exon:9719;Parent=Msa0987930-mRNA-1
chr6_4 exon 39938709 39939225 39938709 ID=Msa0987930-mRNA-1:exon:9720;Parent=Msa0987930-mRNA-1
chr6_4 exon 39939351 39939412 39939351 ID=Msa0987930-mRNA-1:exon:9721;Parent=Msa0987930-mRNA-1
chr6_4 exon 39939739 39939812 39939739 ID=Msa0987930-mRNA-1:exon:9722;Parent=Msa0987930-mRNA-1
chr6_4 exon 39939892 39939969 39939892 ID=Msa0987930-mRNA-1:exon:9723;Parent=Msa0987930-mRNA-1
chr6_4 exon 39940511 39940882 39940511 ID=Msa0987930-mRNA-1:exon:9724;Parent=Msa0987930-mRNA-1
chr6_4 CDS 39934941 39935123 39934941 ID=Msa0987930-mRNA-1:cds;Parent=Msa0987930-mRNA-1
chr6_4 CDS 39935252 39935257 39935252 ID=Msa0987930-mRNA-1:cds;Parent=Msa0987930-mRNA-1
chr6_4 three_prime_UTR 39935258 39935306 39935258 ID=Msa0987930-mRNA-1:three_prime_utr;Parent=Msa0987930-mRNA-1
chr6_4 three_prime_UTR 39935512 39935567 39935512 ID=Msa0987930-mRNA-1:three_prime_utr;Parent=Msa0987930-mRNA-1
chr6_4 three_prime_UTR 39935690 39935720 39935690 ID=Msa0987930-mRNA-1:three_prime_utr;Parent=Msa0987930-mRNA-1
chr6_4 three_prime_UTR 39935802 39935889 39935802 ID=Msa0987930-mRNA-1:three_prime_utr;Parent=Msa0987930-mRNA-1
chr6_4 three_prime_UTR 39935972 39936115 39935972 ID=Msa0987930-mRNA-1:three_prime_utr;Parent=Msa0987930-mRNA-1
chr6_4 three_prime_UTR 39936248 39936332 39936248 ID=Msa0987930-mRNA-1:three_prime_utr;Parent=Msa0987930-mRNA-1
chr6_4 three_prime_UTR 39936474 39936596 39936474 ID=Msa0987930-mRNA-1:three_prime_utr;Parent=Msa0987930-mRNA-1
chr6_4 three_prime_UTR 39937041 39937121 39937041 ID=Msa0987930-mRNA-1:three_prime_utr;Parent=Msa0987930-mRNA-1
chr6_4 three_prime_UTR 39937340 39937411 39937340 ID=Msa0987930-mRNA-1:three_prime_utr;Parent=Msa0987930-mRNA-1
chr6_4 three_prime_UTR 39937792 39937984 39937792 ID=Msa0987930-mRNA-1:three_prime_utr;Parent=Msa0987930-mRNA-1
chr6_4 three_prime_UTR 39938264 39938331 39938264 ID=Msa0987930-mRNA-1:three_prime_utr;Parent=Msa0987930-mRNA-1
chr6_4 three_prime_UTR 39938430 39938497 39938430 ID=Msa0987930-mRNA-1:three_prime_utr;Parent=Msa0987930-mRNA-1
chr6_4 three_prime_UTR 39938709 39939225 39938709 ID=Msa0987930-mRNA-1:three_prime_utr;Parent=Msa0987930-mRNA-1
chr6_4 three_prime_UTR 39939351 39939412 39939351 ID=Msa0987930-mRNA-1:three_prime_utr;Parent=Msa0987930-mRNA-1
chr6_4 three_prime_UTR 39939739 39939812 39939739 ID=Msa0987930-mRNA-1:three_prime_utr;Parent=Msa0987930-mRNA-1
chr6_4 three_prime_UTR 39939892 39939969 39939892 ID=Msa0987930-mRNA-1:three_prime_utr;Parent=Msa0987930-mRNA-1
chr6_4 three_prime_UTR 39940511 39940882 39940511 ID=Msa0987930-mRNA-1:three_prime_utr;Parent=Msa0987930-mRNA-1
Gene Sequence

>Msa0987930

TTCAGTCCGGTTCTCTTCTCCTCACACGGTAAACAAAAAAACGTTCCTCACACCGCCACCTTGCCGTCTCCTCCGTCGACCTCGCCGTTGAACACACCAATCTCCACCGTTTTCTTCTTTCTCAGTGTGCGGCGTCTTCTTCGTTTTGCTTCTTCTTCCGTTTGTCTCTATCATCAATCAAAGTTATGA
Protein sequence

>Msa0987930

FSPVLFSSHGKQKNVPHTATLPSPPSTSPLNTPISTVFFFLSVRRLLRFASSSVCLYHQSKL*