AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0791030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 162 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACGAGTTACTATTGTTTA+TGG 0.127348 5_3:+1872834 Msa0791030:three_prime_UTR
AATTTAACAGTTGCTTATTC+TGG 0.149039 5_3:+1871965 Msa0791030:three_prime_UTR
AAACATCAGGAAGTTGTTTA+AGG 0.196812 5_3:+1870571 Msa0791030:three_prime_UTR
ACTTTACATGGGAGGATTAA+AGG 0.234605 5_3:+1873310 Msa0791030:three_prime_UTR
TGCAATATGGGAAGAGAAAA+AGG 0.243934 5_3:+1873043 Msa0791030:three_prime_UTR
TAAACAACTTCCTGATGTTT+TGG 0.257525 5_3:-1870568 None:intergenic
ATGTAGTTAGATAAGTTTCT+AGG 0.272462 5_3:+1873169 Msa0791030:three_prime_UTR
CATTTGGCATGGATCAGATA+TGG 0.299955 5_3:+1869397 Msa0791030:three_prime_UTR
GCTAACTACGAGGATTATTC+AGG 0.301139 5_3:+1872874 Msa0791030:three_prime_UTR
TGTGATTTCAGTCCTTTATC+TGG 0.308734 5_3:+1872006 Msa0791030:three_prime_UTR
GTTTCAGAACTTACCTCTTA+AGG 0.317681 5_3:-1872595 None:intergenic
AGAGAGAGCATTGTGCAATA+TGG 0.318597 5_3:+1873030 Msa0791030:three_prime_UTR
TTAAGGATGGCTTCATTATC+AGG 0.321072 5_3:+1870588 Msa0791030:three_prime_UTR
ACCTGATTGGTTAGAGTTGA+AGG 0.346244 5_3:+1873204 Msa0791030:three_prime_UTR
GAACGATTATATACCTTTGT+AGG 0.358428 5_3:-1872429 None:intergenic
CAGTATTTGCCGGTAGAATC+AGG 0.358742 5_3:-1873860 None:intergenic
AACTCTAGCAGGCTCTTTCC+AGG 0.361101 5_3:-1873466 None:intergenic
TTTCAGAACTTACCTCTTAA+GGG 0.361709 5_3:-1872594 None:intergenic
ATTGCACTTGCAGTTCATAT+TGG 0.363079 5_3:+1872523 Msa0791030:intron
CAAAAGTCCTACAGATCATT+AGG 0.366008 5_3:+1869639 Msa0791030:three_prime_UTR
GTGGTCGAGGACAGCGTTAT+AGG 0.371251 5_3:+1871141 Msa0791030:three_prime_UTR
ATTTAACAGTTGCTTATTCT+GGG 0.375684 5_3:+1871966 Msa0791030:three_prime_UTR
ATCGAGCTGCGATTAAATTC+AGG 0.379752 5_3:+1869906 Msa0791030:three_prime_UTR
AAATGCATTATGCAGGTATA+CGG 0.385701 5_3:+1871418 Msa0791030:intron
AGTAAACACCTTCCAGATAA+AGG 0.389171 5_3:-1872018 None:intergenic
GATTTAAGCTTTCACCTGAT+TGG 0.395893 5_3:+1873191 Msa0791030:three_prime_UTR
CTGACTAAGATGAACATGTT+TGG 0.399933 5_3:+1874017 Msa0791030:three_prime_UTR
TTGAATTTGAAAATACCATT+TGG 0.400895 5_3:+1869381 Msa0791030:three_prime_UTR
GCATTGATTCTTCCCTTAAG+AGG 0.406835 5_3:+1872582 Msa0791030:three_prime_UTR
GATAGACTTGCAGTATTTGC+CGG 0.410071 5_3:-1873870 None:intergenic
GACGTTGTATTTGACTTCAT+TGG 0.414112 5_3:+1871464 Msa0791030:three_prime_UTR
TTAGATGGACAATGAATTTG+AGG 0.417084 5_3:+1871896 Msa0791030:intron
ATTTGAGGAGAAGCAAATAA+AGG 0.421213 5_3:+1873138 Msa0791030:three_prime_UTR
TTGGTGAGTATTGTGAAATA+AGG 0.427114 5_3:-1874926 None:intergenic
CAGATCATTAGGATCATCTC+AGG 0.432627 5_3:+1869650 Msa0791030:three_prime_UTR
GCAAAATCAGGCTCTACTAT+TGG 0.434597 5_3:+1872560 Msa0791030:three_prime_UTR
AGCAATAATGCCAACAGGAT+TGG 0.436526 5_3:+1874796 Msa0791030:three_prime_UTR
TTATGATGATGATCTTAAAC+AGG 0.440099 5_3:+1869964 Msa0791030:three_prime_UTR
GAGAGAGCATTGTGCAATAT+GGG 0.440525 5_3:+1873031 Msa0791030:three_prime_UTR
TTTAATCGCAGCTCGATCAT+AGG 0.441826 5_3:-1869900 None:intergenic
AACCAACTGTTGCAGATATT+AGG 0.442398 5_3:-1874634 None:intergenic
AAGGGACGTCATTCTAGATA+TGG 0.444919 5_3:+1870668 Msa0791030:three_prime_UTR
GATAGGGAGTGAATCTTAGT+TGG 0.449443 5_3:-1870614 None:intergenic
AAGAAGAAAACGGTGGAGAT+TGG 0.453039 5_3:-1869150 None:intergenic
CTAGCAGCCGCTAAAGTAGC+TGG 0.453585 5_3:+1871165 Msa0791030:three_prime_UTR
TCTTTGCAGGCCAAAACATC+AGG 0.454379 5_3:+1870558 Msa0791030:intron
TTATGCAGGTATACGGCAAA+TGG 0.455407 5_3:+1871425 Msa0791030:intron
TGGCAGCAAAGTGCAAAATC+AGG 0.459814 5_3:+1872548 Msa0791030:three_prime_UTR
TTTACTATGAGAGAGAGAAA+TGG 0.461147 5_3:+1872035 Msa0791030:three_prime_UTR
TCTTGATACATCCAACCAAC+TGG 0.462684 5_3:-1873010 None:intergenic
TGTTCAAAGGTATTTAGAAA+AGG 0.464068 5_3:+1874869 Msa0791030:three_prime_UTR
GTCTATCACAAAATCAAAGA+AGG 0.465270 5_3:+1873886 Msa0791030:three_prime_UTR
TTTAAATTGTGGCCGCGCCA+TGG 0.467174 5_3:+1870349 Msa0791030:three_prime_UTR
GCCTTCAACTCTAACCAATC+AGG 0.470343 5_3:-1873205 None:intergenic
TTCGTATAAATATAGAGCAT+TGG 0.477418 5_3:+1873111 Msa0791030:three_prime_UTR
GTTTCAGCAATAATGCCAAC+AGG 0.481394 5_3:+1874791 Msa0791030:three_prime_UTR
TAAGGTTAGTTAAACAATAG+AGG 0.481505 5_3:-1874908 None:intergenic
CTCCTTCATGTTCCTAGCAC+AGG 0.484436 5_3:-1870636 None:intergenic
TGAACTAATGTTATGTTCAA+AGG 0.485312 5_3:+1874856 Msa0791030:three_prime_UTR
TGGCAGTTGGGAAGCTCGAA+TGG 0.485503 5_3:+1870172 Msa0791030:three_prime_UTR
ATTTCAGTCCTTTATCTGGA+AGG 0.490219 5_3:+1872010 Msa0791030:three_prime_UTR
TTTGAAAATACCATTTGGCA+TGG 0.493311 5_3:+1869386 Msa0791030:three_prime_UTR
ATCAGGAAGTTGTTTAAGGA+TGG 0.495341 5_3:+1870575 Msa0791030:three_prime_UTR
AGTCAATGGAAAGGAGTCAT+TGG 0.496054 5_3:-1874945 None:intergenic
GCTAACTACATAACTTTACA+TGG 0.496572 5_3:+1873298 Msa0791030:three_prime_UTR
GCGATTAAATTCAGGGGAGT+TGG 0.497882 5_3:+1869914 Msa0791030:three_prime_UTR
TATATTTATACGAAAATGAA+AGG 0.501735 5_3:-1873102 None:intergenic
AGTTACTATTGTTTATGGAA+TGG 0.503180 5_3:+1872839 Msa0791030:three_prime_UTR
CTTCATCCCAGCTACTTTAG+CGG 0.503426 5_3:-1871172 None:intergenic
TCATGTTCCTAGCACAGGAT+AGG 0.503720 5_3:-1870631 None:intergenic
GCCAAATCAAACCTCTCCTC+AGG 0.506138 5_3:-1871494 None:intergenic
TCAAAACAAAGTATAGTCAA+TGG 0.507968 5_3:-1874959 None:intergenic
CACTGCACAAATGTGGCAGT+TGG 0.508097 5_3:+1870159 Msa0791030:three_prime_UTR
GCTCGAATGGGTCAATTCCT+TGG 0.510521 5_3:+1870185 Msa0791030:three_prime_UTR
CATGTTCCTAGCACAGGATA+GGG 0.511611 5_3:-1870630 None:intergenic
ACTGCACAAATGTGGCAGTT+GGG 0.511914 5_3:+1870160 Msa0791030:three_prime_UTR
CCGTGTGAGGAGAAGAGAAC+CGG 0.514670 5_3:-1869050 None:intergenic
AGATACTTGCCTGATTCTAC+CGG 0.514786 5_3:+1873851 Msa0791030:three_prime_UTR
AACGATTATATACCTTTGTA+GGG 0.515993 5_3:-1872428 None:intergenic
GGCGAGGTCGACGGAGGAGA+CGG 0.516043 5_3:-1869117 None:intergenic
ATTTGGCATGGATCAGATAT+GGG 0.516241 5_3:+1869398 Msa0791030:three_prime_UTR
CATATCTGATCCATGCCAAA+TGG 0.516686 5_3:-1869396 None:intergenic
ACAAGCAACTTCTGATATGA+TGG 0.520935 5_3:+1871923 Msa0791030:three_prime_UTR
CATGAAGGAGGCCAAGAGGA+AGG 0.522866 5_3:+1870649 Msa0791030:three_prime_UTR
TTACAGATGTGTCGTGGTCG+AGG 0.524433 5_3:+1871128 Msa0791030:intron
AGTTATGTAGTTAGCCTCCA+TGG 0.526706 5_3:-1873290 None:intergenic
CATTACATGATGCAATCTAC+AGG 0.528298 5_3:+1870397 Msa0791030:three_prime_UTR
GTGTTCAACGGCGAGGTCGA+CGG 0.530961 5_3:-1869126 None:intergenic
AGAATGACGTCCCTTCCTCT+TGG 0.531849 5_3:-1870660 None:intergenic
GCACATGGCGTTCGAGAGCA+TGG 0.532295 5_3:+1874060 Msa0791030:three_prime_UTR
CGGAGGAGACGGCAAGGTGG+CGG 0.535976 5_3:-1869106 None:intergenic
CTATTGTTTATGGAATGGCT+AGG 0.538463 5_3:+1872844 Msa0791030:three_prime_UTR
TCGAGCTGCGATTAAATTCA+GGG 0.538997 5_3:+1869907 Msa0791030:three_prime_UTR
GACGGCAAGGTGGCGGTGTG+AGG 0.539935 5_3:-1869099 None:intergenic
TCGAGTATAAACCAGTTGGT+TGG 0.543459 5_3:+1872999 Msa0791030:three_prime_UTR
ATACATCAGATGCATGAGCC+TGG 0.543661 5_3:+1873448 Msa0791030:intron
TCCTGCTTTCAGCTATGAGA+GGG 0.547312 5_3:+1872803 Msa0791030:intron
TTCCTGCTTTCAGCTATGAG+AGG 0.550089 5_3:+1872802 Msa0791030:intron
GTCTGTCGCTACTACTCTTG+AGG 0.550215 5_3:+1873491 Msa0791030:three_prime_UTR
ATTGGTTAGAGTTGAAGGCT+TGG 0.550527 5_3:+1873209 Msa0791030:three_prime_UTR
TTGGTGATCCTCCTGAGGAG+AGG 0.552332 5_3:+1871483 Msa0791030:three_prime_UTR
ACACAGCTCATGTTGCTGCT+AGG 0.553358 5_3:+1869795 Msa0791030:three_prime_UTR
TATTAGAGCTTTGTTAACCA+TGG 0.554431 5_3:+1873273 Msa0791030:three_prime_UTR
AGATGATCCTAATGATCTGT+AGG 0.555523 5_3:-1869646 None:intergenic
GGCCTAATATCTGCAACAGT+TGG 0.557391 5_3:+1874632 Msa0791030:three_prime_UTR
TAAACAATAGAGGACATCAA+TGG 0.561945 5_3:-1874898 None:intergenic
CACACTGAGAAAGAAGAAAA+CGG 0.564005 5_3:-1869160 None:intergenic
ATATTTATACGAAAATGAAA+GGG 0.564014 5_3:-1873101 None:intergenic
TGATGCAATCTACAGGATGA+TGG 0.565247 5_3:+1870404 Msa0791030:three_prime_UTR
AAACCACGCATGTGTATTGG+TGG 0.565338 5_3:+1874667 Msa0791030:three_prime_UTR
CCGGTTCTCTTCTCCTCACA+CGG 0.565646 5_3:+1869050 Msa0791030:CDS
CTAACTACGAGGATTATTCA+GGG 0.568404 5_3:+1872875 Msa0791030:three_prime_UTR
ATGGACAATGAATTTGAGGA+TGG 0.570269 5_3:+1871900 Msa0791030:three_prime_UTR
GGCAGTTGGGAAGCTCGAAT+GGG 0.571868 5_3:+1870173 Msa0791030:three_prime_UTR
AGTGTATAGTAACAAAGAGC+GGG 0.580787 5_3:+1871193 Msa0791030:three_prime_UTR
TTGTCTCTATCATCAATCAA+AGG 0.583253 5_3:+1869215 Msa0791030:CDS
ATGAAGGAGGCCAAGAGGAA+GGG 0.583542 5_3:+1870650 Msa0791030:three_prime_UTR
CTCTGTTATATCACGGACCA+TGG 0.587310 5_3:-1870366 None:intergenic
GCGACAGACGAAACTCTAGC+AGG 0.588210 5_3:-1873477 None:intergenic
ACAAAGTATAGTCAATGGAA+AGG 0.588594 5_3:-1874954 None:intergenic
GTGGAGATTGGTGTGTTCAA+CGG 0.591351 5_3:-1869138 None:intergenic
TCTATCACAAAATCAAAGAA+GGG 0.593364 5_3:+1873887 Msa0791030:three_prime_UTR
AGATCATTAGGATCATCTCA+GGG 0.599057 5_3:+1869651 Msa0791030:three_prime_UTR
TCTTATTTACAGATGTGTCG+TGG 0.600555 5_3:+1871122 Msa0791030:intron
TGTTGCAAAATGCCCTACAA+AGG 0.603887 5_3:+1872416 Msa0791030:three_prime_UTR
AAATCAAACCTCTCCTCAGG+AGG 0.609598 5_3:-1871491 None:intergenic
AATGGAAGGACAATAGAAAG+TGG 0.612556 5_3:+1872053 Msa0791030:three_prime_UTR
TTCACTCCCTATCCTGTGCT+AGG 0.612705 5_3:+1870624 Msa0791030:three_prime_UTR
ACTTGCAGTTCATATTGGCA+TGG 0.614305 5_3:+1872528 Msa0791030:intron
AGGATCATCTCAGGGGTGGA+CGG 0.614978 5_3:+1869659 Msa0791030:three_prime_UTR
TAGCAGCCGCTAAAGTAGCT+GGG 0.615799 5_3:+1871166 Msa0791030:three_prime_UTR
TGATTGATGATAGAGACAAA+CGG 0.617251 5_3:-1869211 None:intergenic
TAGAGCTTTGTTAACCATGG+AGG 0.620374 5_3:+1873276 Msa0791030:three_prime_UTR
CTTCATTGGTGATCCTCCTG+AGG 0.623430 5_3:+1871478 Msa0791030:three_prime_UTR
ACTACATAACTTTACATGGG+AGG 0.625525 5_3:+1873302 Msa0791030:three_prime_UTR
AAGTGTATAGTAACAAAGAG+CGG 0.628437 5_3:+1871192 Msa0791030:three_prime_UTR
CATTAGGATCATCTCAGGGG+TGG 0.630656 5_3:+1869655 Msa0791030:three_prime_UTR
AGCAATTCTCTGTTATATCA+CGG 0.631225 5_3:-1870373 None:intergenic
AATGATTGTGCCAATCCTGT+TGG 0.632692 5_3:-1874806 None:intergenic
GGTCGACGGAGGAGACGGCA+AGG 0.637294 5_3:-1869112 None:intergenic
GGAGTAACACTGCACAAATG+TGG 0.639362 5_3:+1870152 Msa0791030:three_prime_UTR
AGTGGTTCAATTGATTCACA+TGG 0.642905 5_3:+1872071 Msa0791030:three_prime_UTR
GATTGGTGTGTTCAACGGCG+AGG 0.643453 5_3:-1869133 None:intergenic
TTCAACGGCGAGGTCGACGG+AGG 0.650561 5_3:-1869123 None:intergenic
GGAACATGAAGGAGGCCAAG+AGG 0.653749 5_3:+1870645 Msa0791030:three_prime_UTR
TGATGGCAAGCAGTCAACAA+AGG 0.657586 5_3:+1871940 Msa0791030:three_prime_UTR
ATATTCGAGTATAAACCAGT+TGG 0.658609 5_3:+1872995 Msa0791030:three_prime_UTR
AGAGGGAGTTCGAAGTACAG+AGG 0.669918 5_3:+1870131 Msa0791030:three_prime_UTR
CTAACTACATAACTTTACAT+GGG 0.671104 5_3:+1873299 Msa0791030:three_prime_UTR
CTATGAGAGAGAGAAATGGA+AGG 0.671735 5_3:+1872039 Msa0791030:three_prime_UTR
CGACGGAGGAGACGGCAAGG+TGG 0.673937 5_3:-1869109 None:intergenic
CTGTGCTAGGAACATGAAGG+AGG 0.680742 5_3:+1870637 Msa0791030:three_prime_UTR
CGAGCTGCGATTAAATTCAG+GGG 0.681626 5_3:+1869908 Msa0791030:three_prime_UTR
TTATATCACGGACCATGGCG+CGG 0.686056 5_3:-1870361 None:intergenic
AAATGTTTCTGCAAGCTGTG+CGG 0.691119 5_3:-1872391 None:intergenic
ATCCTGTGCTAGGAACATGA+AGG 0.696190 5_3:+1870634 Msa0791030:three_prime_UTR
TAACTACGAGGATTATTCAG+GGG 0.696814 5_3:+1872876 Msa0791030:three_prime_UTR
CAGGGGATAAGAATTATCAG+AGG 0.706903 5_3:+1872893 Msa0791030:three_prime_UTR
CATCCACCAATACACATGCG+TGG 0.710635 5_3:-1874670 None:intergenic
ACTGAGAAAGAAGAAAACGG+TGG 0.729219 5_3:-1869157 None:intergenic
GATCATTAGGATCATCTCAG+GGG 0.736352 5_3:+1869652 Msa0791030:three_prime_UTR
AGGTTGTGCAGCTAACTACG+AGG 0.761300 5_3:+1872864 Msa0791030:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATATGATTTACTATTTT+AGG + chr5_3:1869731-1869750 Msa0791030:intron 10.0%
!!! TTGTGTAATTAATTTTTTTA+TGG + chr5_3:1869846-1869865 Msa0791030:intron 10.0%
!!! ATAATCTTTTTTATTGTAAT+AGG + chr5_3:1872169-1872188 Msa0791030:intron 10.0%
!! ATATTTAATATTATTGATCA+TGG + chr5_3:1873959-1873978 Msa0791030:intron 10.0%
!! ACATTTAACTAATGAAATTT+AGG - chr5_3:1868732-1868751 None:intergenic 15.0%
!! CAACATATATATATATATGA+GGG - chr5_3:1868994-1869013 None:intergenic 15.0%
!! ACAACATATATATATATATG+AGG - chr5_3:1868995-1869014 None:intergenic 15.0%
!! TCATATATATATATATGTTG+TGG + chr5_3:1868994-1869013 Msa0791030:intron 15.0%
!!! TTTAATCGATTTAGATTTTT+TGG + chr5_3:1869321-1869340 Msa0791030:intron 15.0%
!!! TTTATTTTTCACTTCATTTT+AGG + chr5_3:1869475-1869494 Msa0791030:intron 15.0%
!!! CTATTTTTTTTCTTTGATTT+TGG + chr5_3:1869695-1869714 Msa0791030:intron 15.0%
!! ACTTCAGTTAAATTAAAAAT+AGG - chr5_3:1870219-1870238 None:intergenic 15.0%
!! TAATTTAACTGAAGTTATTT+AGG + chr5_3:1870224-1870243 Msa0791030:intron 15.0%
!! CTTTGTTCAATTTATTTAAA+TGG + chr5_3:1870522-1870541 Msa0791030:intron 15.0%
!! TTCAATTTATTTAAATGGTT+TGG + chr5_3:1870527-1870546 Msa0791030:intron 15.0%
!!! GATTATTTTGTTTTTTTAGA+TGG + chr5_3:1871881-1871900 Msa0791030:intron 15.0%
!! TCAACTATTTAACATATAAA+TGG - chr5_3:1872220-1872239 None:intergenic 15.0%
!! TCATATATTAATTTCCAAAT+TGG + chr5_3:1872722-1872741 Msa0791030:intron 15.0%
!! ATATTTATACGAAAATGAAA+GGG - chr5_3:1873104-1873123 None:intergenic 15.0%
!! TATATTTATACGAAAATGAA+AGG - chr5_3:1873105-1873124 None:intergenic 15.0%
!! TGATATTATTTACATGAATA+AGG - chr5_3:1874193-1874212 None:intergenic 15.0%
!!! TGAAATGCATATTATTATTT+TGG + chr5_3:1874542-1874561 Msa0791030:intron 15.0%
!! TTAGTTATGCATGTAAAATA+TGG - chr5_3:1868669-1868688 None:intergenic 20.0%
!!! TATTTTGGTAAATTGGTAAA+TGG + chr5_3:1868962-1868981 Msa0791030:intron 20.0%
!!! AAATGGTATTTTCAAATTCA+AGG - chr5_3:1869382-1869401 None:intergenic 20.0%
!! TTGAATTTGAAAATACCATT+TGG + chr5_3:1869381-1869400 Msa0791030:three_prime_UTR 20.0%
!! AAATAAAAACTTGGAAAGAT+AGG - chr5_3:1869462-1869481 None:intergenic 20.0%
!! TGAAGTGAAAAATAAAAACT+TGG - chr5_3:1869471-1869490 None:intergenic 20.0%
!!! GTTTTGTATTTGATTTTTGT+AGG + chr5_3:1869764-1869783 Msa0791030:intron 20.0%
!!! TAGTGTAACTTTTTAAATTG+TGG + chr5_3:1870338-1870357 Msa0791030:intron 20.0%
!!! AATTTATTTAAATGGTTTGG+TGG + chr5_3:1870530-1870549 Msa0791030:intron 20.0%
!! TCAATTCATTAAAACTATCA+AGG - chr5_3:1870711-1870730 None:intergenic 20.0%
!!! TGATAGTTTTAATGAATTGA+AGG + chr5_3:1870711-1870730 Msa0791030:intron 20.0%
!!! AATAAGTTGCTCTAAAATTT+TGG - chr5_3:1870945-1870964 None:intergenic 20.0%
!!! GTATATTTCTATTTACTGAA+TGG + chr5_3:1871215-1871234 Msa0791030:intron 20.0%
!!! GCAACTTTATGTTTTTTTAT+AGG + chr5_3:1871241-1871260 Msa0791030:intron 20.0%
!! GAAAAGATCAATGTTTATAT+TGG + chr5_3:1871667-1871686 Msa0791030:intron 20.0%
!!! TTAATGTTGTTGGATTATTT+TGG + chr5_3:1871817-1871836 Msa0791030:intron 20.0%
!!! TAATGTTGTTGGATTATTTT+GGG + chr5_3:1871818-1871837 Msa0791030:intron 20.0%
!! TTGTAGTTTATCTAAATTAG+AGG + chr5_3:1872114-1872133 Msa0791030:intron 20.0%
!! CAGGAAGAATTATAATAAAA+TGG - chr5_3:1872280-1872299 None:intergenic 20.0%
!!! CATTTTATTATAATTCTTCC+TGG + chr5_3:1872278-1872297 Msa0791030:intron 20.0%
!! AATTTCCAAATTGGTTAATT+TGG + chr5_3:1872731-1872750 Msa0791030:intron 20.0%
!! TATAACCAAATTAACCAATT+TGG - chr5_3:1872739-1872758 None:intergenic 20.0%
!! TAGGTCAAATTTGAAAAATT+AGG - chr5_3:1873555-1873574 None:intergenic 20.0%
!!! ATGGTCTTTTTTATATTTTC+AGG + chr5_3:1873978-1873997 Msa0791030:intron 20.0%
!!! TTTTATATATTGCCTTCATA+TGG + chr5_3:1874222-1874241 Msa0791030:intron 20.0%
!!! GATTTTGTTAAACTAAGAAT+GGG - chr5_3:1874260-1874279 None:intergenic 20.0%
!!! AGATTTTGTTAAACTAAGAA+TGG - chr5_3:1874261-1874280 None:intergenic 20.0%
!! TTAGTTTAACAAAATCTAAC+TGG + chr5_3:1874264-1874283 Msa0791030:intron 20.0%
! ATACAGAACAATTGTTAACA+TGG + chr5_3:1868688-1868707 Msa0791030:intron 25.0%
! CTAGTTTAGTAGATAGATAA+GGG - chr5_3:1868894-1868913 None:intergenic 25.0%
!! TCTAGTTTAGTAGATAGATA+AGG - chr5_3:1868895-1868914 None:intergenic 25.0%
! ATCTATCTACTAAACTAGAT+AGG + chr5_3:1868896-1868915 Msa0791030:intron 25.0%
! ATATATATATATGAGGGAGA+TGG - chr5_3:1868988-1869007 None:intergenic 25.0%
! TTTGTTCTTCTAATTGATTG+AGG + chr5_3:1869287-1869306 Msa0791030:intron 25.0%
!!! TAGATTTTTTGGTATGTCTT+TGG + chr5_3:1869332-1869351 Msa0791030:intron 25.0%
! ATATGGGTAAGTTTCAATTT+GGG + chr5_3:1869414-1869433 Msa0791030:intron 25.0%
!!! TTGTATTTGATTTTTGTAGG+TGG + chr5_3:1869767-1869786 Msa0791030:intron 25.0%
!! TTATGATGATGATCTTAAAC+AGG + chr5_3:1869964-1869983 Msa0791030:three_prime_UTR 25.0%
!! AAATCAATGTTTTCTCAAGA+GGG + chr5_3:1870114-1870133 Msa0791030:three_prime_UTR 25.0%
!! AAAAATAGGACTTTTTACCA+AGG - chr5_3:1870205-1870224 None:intergenic 25.0%
! ATATTGAAACATCATGTATC+TGG + chr5_3:1870309-1870328 Msa0791030:intron 25.0%
! AAAGAAAATGAATAGAAAGG+AGG - chr5_3:1870440-1870459 None:intergenic 25.0%
! AGGAAAGAAAATGAATAGAA+AGG - chr5_3:1870443-1870462 None:intergenic 25.0%
! TTGAACAAAGTTATTGTATC+AGG - chr5_3:1870512-1870531 None:intergenic 25.0%
! GAATTGAAGGATATAGATTA+TGG + chr5_3:1870724-1870743 Msa0791030:intron 25.0%
!!! AAAATCTCTGTTAGTTTGTA+AGG + chr5_3:1870747-1870766 Msa0791030:intron 25.0%
! AACCTATCTGATACTTTATT+TGG + chr5_3:1871011-1871030 Msa0791030:intron 25.0%
!! ATCCAAATAAAGTATCAGAT+AGG - chr5_3:1871016-1871035 None:intergenic 25.0%
!!! AATTTTGTTTTTGAACTGCA+TGG + chr5_3:1871065-1871084 Msa0791030:intron 25.0%
!!! TTTTCATCATTGGCTTAATA+GGG - chr5_3:1871652-1871671 None:intergenic 25.0%
!! AACATTGATCTTTTCATCAT+TGG - chr5_3:1871662-1871681 None:intergenic 25.0%
! TTGATGCTAATTAATGTTGT+TGG + chr5_3:1871807-1871826 Msa0791030:intron 25.0%
! AATTTAACAGTTGCTTATTC+TGG + chr5_3:1871965-1871984 Msa0791030:three_prime_UTR 25.0%
! ATTTAACAGTTGCTTATTCT+GGG + chr5_3:1871966-1871985 Msa0791030:three_prime_UTR 25.0%
!!! GTTGACTTTTGTATTTTATC+AGG + chr5_3:1872348-1872367 Msa0791030:intron 25.0%
! AACGATTATATACCTTTGTA+GGG - chr5_3:1872431-1872450 None:intergenic 25.0%
! AGTCTTCTTAAATATCTCAA+TGG + chr5_3:1872623-1872642 Msa0791030:intron 25.0%
! TGGATCATTGTTTCATAATT+TGG + chr5_3:1872678-1872697 Msa0791030:intron 25.0%
! TTACGAGTTACTATTGTTTA+TGG + chr5_3:1872834-1872853 Msa0791030:three_prime_UTR 25.0%
! AGTTACTATTGTTTATGGAA+TGG + chr5_3:1872839-1872858 Msa0791030:three_prime_UTR 25.0%
!!! AAGAGAAAAAGGTTTTGATT+TGG + chr5_3:1873054-1873073 Msa0791030:three_prime_UTR 25.0%
! TTCGTATAAATATAGAGCAT+TGG + chr5_3:1873111-1873130 Msa0791030:three_prime_UTR 25.0%
! ATGTAGTTAGATAAGTTTCT+AGG + chr5_3:1873169-1873188 Msa0791030:three_prime_UTR 25.0%
! CTAACTACATAACTTTACAT+GGG + chr5_3:1873299-1873318 Msa0791030:three_prime_UTR 25.0%
! AGTATCAATGCTACATATAT+AGG - chr5_3:1873574-1873593 None:intergenic 25.0%
! TCTATCACAAAATCAAAGAA+GGG + chr5_3:1873887-1873906 Msa0791030:three_prime_UTR 25.0%
! CTTTGATATATTTCAAGACA+TGG + chr5_3:1874300-1874319 Msa0791030:intron 25.0%
! AGATTTATGCATCCATTATA+AGG - chr5_3:1874355-1874374 None:intergenic 25.0%
! ACAAGATGAAAAAATTAACG+CGG - chr5_3:1874596-1874615 None:intergenic 25.0%
! TGAACTAATGTTATGTTCAA+AGG + chr5_3:1874856-1874875 Msa0791030:three_prime_UTR 25.0%
!!! TGTTCAAAGGTATTTAGAAA+AGG + chr5_3:1874869-1874888 Msa0791030:three_prime_UTR 25.0%
!! TAAGGTTAGTTAAACAATAG+AGG - chr5_3:1874911-1874930 None:intergenic 25.0%
! TCAAAACAAAGTATAGTCAA+TGG - chr5_3:1874962-1874981 None:intergenic 25.0%
TTTAGGTACCAAGTAAACTA+AGG - chr5_3:1868715-1868734 None:intergenic 30.0%
! TGCAGACATTTTATGTGTAT+TGG + chr5_3:1868784-1868803 Msa0791030:intron 30.0%
! GCAGACATTTTATGTGTATT+GGG + chr5_3:1868785-1868804 Msa0791030:intron 30.0%
TCACACGGTAAACAAAAAAA+CGG + chr5_3:1869065-1869084 Msa0791030:CDS 30.0%
! TGATTGATGATAGAGACAAA+CGG - chr5_3:1869214-1869233 None:intergenic 30.0%
TTGTCTCTATCATCAATCAA+AGG + chr5_3:1869215-1869234 Msa0791030:CDS 30.0%
ACAAAATCGCACCAAAAAAT+GGG - chr5_3:1869272-1869291 None:intergenic 30.0%
AACAAAATCGCACCAAAAAA+TGG - chr5_3:1869273-1869292 None:intergenic 30.0%
TTTGAAAATACCATTTGGCA+TGG + chr5_3:1869386-1869405 Msa0791030:three_prime_UTR 30.0%
GATATGGGTAAGTTTCAATT+TGG + chr5_3:1869413-1869432 Msa0791030:intron 30.0%
CAGCAATAGAGAAAATCAAA+AGG - chr5_3:1869576-1869595 None:intergenic 30.0%
! AGGCTCTGATATTCAAAATT+TGG - chr5_3:1869883-1869902 None:intergenic 30.0%
TTGATGAATGTGAAACTAGA+TGG + chr5_3:1870008-1870027 Msa0791030:intron 30.0%
! CAAATCAATGTTTTCTCAAG+AGG + chr5_3:1870113-1870132 Msa0791030:three_prime_UTR 30.0%
CTTACCAACAAAATTGTTCA+CGG + chr5_3:1870252-1870271 Msa0791030:intron 30.0%
! TAAACCGTGAACAATTTTGT+TGG - chr5_3:1870259-1870278 None:intergenic 30.0%
! GTTCACGGTTTAGTTTATAT+TGG + chr5_3:1870267-1870286 Msa0791030:intron 30.0%
AGCAATTCTCTGTTATATCA+CGG - chr5_3:1870376-1870395 None:intergenic 30.0%
! CTATTCATTTTCTTTCCTAG+AGG + chr5_3:1870445-1870464 Msa0791030:intron 30.0%
AAAAGTTAATGTATCAGAGC+TGG - chr5_3:1870488-1870507 None:intergenic 30.0%
! TAAACAACTTCCTGATGTTT+TGG - chr5_3:1870571-1870590 None:intergenic 30.0%
AAACATCAGGAAGTTGTTTA+AGG + chr5_3:1870571-1870590 Msa0791030:three_prime_UTR 30.0%
! AAATTCTACTGTTGGTGAAT+AGG - chr5_3:1870905-1870924 None:intergenic 30.0%
! TCACCAACAGTAGAATTTTA+TGG + chr5_3:1870907-1870926 Msa0791030:intron 30.0%
ATGCCATAAAATTCTACTGT+TGG - chr5_3:1870913-1870932 None:intergenic 30.0%
AAGTGTATAGTAACAAAGAG+CGG + chr5_3:1871192-1871211 Msa0791030:three_prime_UTR 30.0%
! AGTAAGTTATGTTAGTTTCC+CGG + chr5_3:1871272-1871291 Msa0791030:intron 30.0%
TAATCTCAAATGCATTATGC+AGG + chr5_3:1871411-1871430 Msa0791030:intron 30.0%
AAATGCATTATGCAGGTATA+CGG + chr5_3:1871418-1871437 Msa0791030:intron 30.0%
! TGACATATTGCTTCTAAAGA+AGG - chr5_3:1871532-1871551 None:intergenic 30.0%
!!! CTTTTCATCATTGGCTTAAT+AGG - chr5_3:1871653-1871672 None:intergenic 30.0%
! TGATTTTCTGATTCTGATTC+TGG + chr5_3:1871854-1871873 Msa0791030:intron 30.0%
! GATTTTCTGATTCTGATTCT+GGG + chr5_3:1871855-1871874 Msa0791030:intron 30.0%
TTAGATGGACAATGAATTTG+AGG + chr5_3:1871896-1871915 Msa0791030:intron 30.0%
TTTACTATGAGAGAGAGAAA+TGG + chr5_3:1872035-1872054 Msa0791030:three_prime_UTR 30.0%
GAACGATTATATACCTTTGT+AGG - chr5_3:1872432-1872451 None:intergenic 30.0%
TTTCAGAACTTACCTCTTAA+GGG - chr5_3:1872597-1872616 None:intergenic 30.0%
TGATAGCTTATGAAAGTTAC+TGG - chr5_3:1872705-1872724 None:intergenic 30.0%
TTGCTTCTACAGACAAAAAT+GGG - chr5_3:1872921-1872940 None:intergenic 30.0%
ATTGCTTCTACAGACAAAAA+TGG - chr5_3:1872922-1872941 None:intergenic 30.0%
ATATTCGAGTATAAACCAGT+TGG + chr5_3:1872995-1873014 Msa0791030:three_prime_UTR 30.0%
!! TAGAGCATTGGAAAAATTTG+AGG + chr5_3:1873123-1873142 Msa0791030:three_prime_UTR 30.0%
ATTTGAGGAGAAGCAAATAA+AGG + chr5_3:1873138-1873157 Msa0791030:three_prime_UTR 30.0%
!! TATTAGAGCTTTGTTAACCA+TGG + chr5_3:1873273-1873292 Msa0791030:three_prime_UTR 30.0%
GCTAACTACATAACTTTACA+TGG + chr5_3:1873298-1873317 Msa0791030:three_prime_UTR 30.0%
CACGTGTTAGTAAATACAAT+TGG + chr5_3:1873759-1873778 Msa0791030:intron 30.0%
GTCTATCACAAAATCAAAGA+AGG + chr5_3:1873886-1873905 Msa0791030:three_prime_UTR 30.0%
TGTTTGGAAAAAAAAGCTGA+TGG + chr5_3:1874033-1874052 Msa0791030:three_prime_UTR 30.0%
ATGTTCTTGATACCATATGA+AGG - chr5_3:1874237-1874256 None:intergenic 30.0%
AATTCTACTTATAAGGCCTT+AGG - chr5_3:1874403-1874422 None:intergenic 30.0%
GCTGCATAATTCTACTTATA+AGG - chr5_3:1874410-1874429 None:intergenic 30.0%
CTATATGCTCATGCTATATA+AGG - chr5_3:1874497-1874516 None:intergenic 30.0%
AATGATACATGATCGAACTA+TGG - chr5_3:1874569-1874588 None:intergenic 30.0%
!!! TCATCTTGTTTTGTAGATGA+TGG + chr5_3:1874607-1874626 Msa0791030:intron 30.0%
!! TACACCTGTGTTTTTAATGT+TGG + chr5_3:1874724-1874743 Msa0791030:three_prime_UTR 30.0%
GATACCAACATTAAAAACAC+AGG - chr5_3:1874731-1874750 None:intergenic 30.0%
TAAACAATAGAGGACATCAA+TGG - chr5_3:1874901-1874920 None:intergenic 30.0%
! TTGGTGAGTATTGTGAAATA+AGG - chr5_3:1874929-1874948 None:intergenic 30.0%
ACAAAGTATAGTCAATGGAA+AGG - chr5_3:1874957-1874976 None:intergenic 30.0%
AACATGGTCCTTAGTTTACT+TGG + chr5_3:1868704-1868723 Msa0791030:intron 35.0%
GTCTGCATATGATACAAAAG+TGG - chr5_3:1868771-1868790 None:intergenic 35.0%
!!! GTTTTTTTGTTTACCGTGTG+AGG - chr5_3:1869066-1869085 None:intergenic 35.0%
CACACGGTAAACAAAAAAAC+GGG + chr5_3:1869066-1869085 Msa0791030:CDS 35.0%
CACACTGAGAAAGAAGAAAA+CGG - chr5_3:1869163-1869182 None:intergenic 35.0%
CTCTATCATCAATCAAAGGT+TGG + chr5_3:1869219-1869238 Msa0791030:intron 35.0%
ATTTGGCATGGATCAGATAT+GGG + chr5_3:1869398-1869417 Msa0791030:three_prime_UTR 35.0%
! GTTTCAATTTGGGATGTTAC+TGG + chr5_3:1869424-1869443 Msa0791030:intron 35.0%
CAAAAGTCCTACAGATCATT+AGG + chr5_3:1869639-1869658 Msa0791030:three_prime_UTR 35.0%
AGATGATCCTAATGATCTGT+AGG - chr5_3:1869649-1869668 None:intergenic 35.0%
AGATCATTAGGATCATCTCA+GGG + chr5_3:1869651-1869670 Msa0791030:three_prime_UTR 35.0%
CATTACATGATGCAATCTAC+AGG + chr5_3:1870397-1870416 Msa0791030:three_prime_UTR 35.0%
! TTTTCTTTCCTAGAGGATGA+TGG + chr5_3:1870452-1870471 Msa0791030:intron 35.0%
ATCAGGAAGTTGTTTAAGGA+TGG + chr5_3:1870575-1870594 Msa0791030:three_prime_UTR 35.0%
TTAAGGATGGCTTCATTATC+AGG + chr5_3:1870588-1870607 Msa0791030:three_prime_UTR 35.0%
!! ATCTCTGTTAGTTTGTAAGG+TGG + chr5_3:1870750-1870769 Msa0791030:intron 35.0%
TTAGTTGTGCTGAGTATTCT+AGG + chr5_3:1870853-1870872 Msa0791030:intron 35.0%
! TCAACCCTATTTGAAGTGTA+TGG + chr5_3:1870966-1870985 Msa0791030:intron 35.0%
CACTCCATACACTTCAAATA+GGG - chr5_3:1870973-1870992 None:intergenic 35.0%
! TCTTATTTACAGATGTGTCG+TGG + chr5_3:1871122-1871141 Msa0791030:intron 35.0%
AGTGTATAGTAACAAAGAGC+GGG + chr5_3:1871193-1871212 Msa0791030:three_prime_UTR 35.0%
! GAGTTTAAAGTCAGAGATCT+CGG - chr5_3:1871305-1871324 None:intergenic 35.0%
! GACGTTGTATTTGACTTCAT+TGG + chr5_3:1871464-1871483 Msa0791030:three_prime_UTR 35.0%
!!! AGGTTTGATTTGGCATTTTG+TGG + chr5_3:1871503-1871522 Msa0791030:intron 35.0%
!! AGCACTGATAGAAATAGTGA+AGG - chr5_3:1871603-1871622 None:intergenic 35.0%
GGTAAGAGTGAAAAGAAATG+AGG - chr5_3:1871631-1871650 None:intergenic 35.0%
ATGGACAATGAATTTGAGGA+TGG + chr5_3:1871900-1871919 Msa0791030:three_prime_UTR 35.0%
ACAAGCAACTTCTGATATGA+TGG + chr5_3:1871923-1871942 Msa0791030:three_prime_UTR 35.0%
TGTGATTTCAGTCCTTTATC+TGG + chr5_3:1872006-1872025 Msa0791030:three_prime_UTR 35.0%
ATTTCAGTCCTTTATCTGGA+AGG + chr5_3:1872010-1872029 Msa0791030:three_prime_UTR 35.0%
AGTAAACACCTTCCAGATAA+AGG - chr5_3:1872021-1872040 None:intergenic 35.0%
AATGGAAGGACAATAGAAAG+TGG + chr5_3:1872053-1872072 Msa0791030:three_prime_UTR 35.0%
! AGTGGTTCAATTGATTCACA+TGG + chr5_3:1872071-1872090 Msa0791030:three_prime_UTR 35.0%
TCTTCCTGGATCTTCATTTA+TGG + chr5_3:1872292-1872311 Msa0791030:intron 35.0%
! CTTGTCATTTGTCCAATGAT+CGG + chr5_3:1872461-1872480 Msa0791030:intron 35.0%
ATTTGTCCAATGATCGGAAA+TGG + chr5_3:1872467-1872486 Msa0791030:intron 35.0%
GATATTCCATTTCCGATCAT+TGG - chr5_3:1872476-1872495 None:intergenic 35.0%
ATTGCACTTGCAGTTCATAT+TGG + chr5_3:1872523-1872542 Msa0791030:intron 35.0%
GTTTCAGAACTTACCTCTTA+AGG - chr5_3:1872598-1872617 None:intergenic 35.0%
ACAATGATCCATCAGTAAGT+AGG - chr5_3:1872669-1872688 None:intergenic 35.0%
CTATTGTTTATGGAATGGCT+AGG + chr5_3:1872844-1872863 Msa0791030:three_prime_UTR 35.0%
CTAACTACGAGGATTATTCA+GGG + chr5_3:1872875-1872894 Msa0791030:three_prime_UTR 35.0%
TAACTACGAGGATTATTCAG+GGG + chr5_3:1872876-1872895 Msa0791030:three_prime_UTR 35.0%
TGCTTCTACAGACAAAAATG+GGG - chr5_3:1872920-1872939 None:intergenic 35.0%
TGCAATATGGGAAGAGAAAA+AGG + chr5_3:1873043-1873062 Msa0791030:three_prime_UTR 35.0%
GATTTAAGCTTTCACCTGAT+TGG + chr5_3:1873191-1873210 Msa0791030:three_prime_UTR 35.0%
ACTACATAACTTTACATGGG+AGG + chr5_3:1873302-1873321 Msa0791030:three_prime_UTR 35.0%
ACTTTACATGGGAGGATTAA+AGG + chr5_3:1873310-1873329 Msa0791030:three_prime_UTR 35.0%
!! AGAAGAATCAAGTTGACTGT+TGG + chr5_3:1873371-1873390 Msa0791030:intron 35.0%
GGATGCAGTTATAACAACAA+TGG + chr5_3:1873392-1873411 Msa0791030:intron 35.0%
!! TGGTATTCAGTTGATGATGT+TGG + chr5_3:1873412-1873431 Msa0791030:intron 35.0%
!! AGTTGATGATGTTGGTTCTT+TGG + chr5_3:1873420-1873439 Msa0791030:intron 35.0%
GAACAGATTAAACTGTCAGA+AGG + chr5_3:1873820-1873839 Msa0791030:intron 35.0%
CTGACTAAGATGAACATGTT+TGG + chr5_3:1874017-1874036 Msa0791030:three_prime_UTR 35.0%
TTCACCTTTGCTTAGTTTCA+AGG + chr5_3:1874114-1874133 Msa0791030:intron 35.0%
GAAATGCATAACAGAAACTG+TGG + chr5_3:1874322-1874341 Msa0791030:intron 35.0%
!!! CTTGTTTTGTAGATGATGGT+AGG + chr5_3:1874611-1874630 Msa0791030:intron 35.0%
AACCAACTGTTGCAGATATT+AGG - chr5_3:1874637-1874656 None:intergenic 35.0%
AAAAAACCACGCATGTGTAT+TGG + chr5_3:1874664-1874683 Msa0791030:three_prime_UTR 35.0%
TGCAATTCCAATCAAGGACA+AGG + chr5_3:1868835-1868854 Msa0791030:intron 40.0%
ATTCCAATCAAGGACAAGGA+CGG + chr5_3:1868839-1868858 Msa0791030:intron 40.0%
! TCACAACTTGTTCCTTGTGT+GGG + chr5_3:1868862-1868881 Msa0791030:intron 40.0%
GGGCAAAATTGTCAAACGTA+CGG - chr5_3:1868933-1868952 None:intergenic 40.0%
! ACGTTTGACAATTTTGCCCT+TGG + chr5_3:1868934-1868953 Msa0791030:intron 40.0%
! TTTGACAATTTTGCCCTTGG+AGG + chr5_3:1868937-1868956 Msa0791030:intron 40.0%
! TTGACAATTTTGCCCTTGGA+GGG + chr5_3:1868938-1868957 Msa0791030:intron 40.0%
TTACCAAAATACCCCTCCAA+GGG - chr5_3:1868953-1868972 None:intergenic 40.0%
TTTACCAAAATACCCCTCCA+AGG - chr5_3:1868954-1868973 None:intergenic 40.0%
!!! GGAGGGGTATTTTGGTAAAT+TGG + chr5_3:1868955-1868974 Msa0791030:intron 40.0%
AAGAAGAAAACGGTGGAGAT+TGG - chr5_3:1869153-1869172 None:intergenic 40.0%
ACTGAGAAAGAAGAAAACGG+TGG - chr5_3:1869160-1869179 None:intergenic 40.0%
!!! TGCTTGCATGTCCCATTTTT+TGG + chr5_3:1869258-1869277 Msa0791030:intron 40.0%
CATATCTGATCCATGCCAAA+TGG - chr5_3:1869399-1869418 None:intergenic 40.0%
CATTTGGCATGGATCAGATA+TGG + chr5_3:1869397-1869416 Msa0791030:three_prime_UTR 40.0%
CAGATCATTAGGATCATCTC+AGG + chr5_3:1869650-1869669 Msa0791030:three_prime_UTR 40.0%
GATCATTAGGATCATCTCAG+GGG + chr5_3:1869652-1869671 Msa0791030:three_prime_UTR 40.0%
TTTAATCGCAGCTCGATCAT+AGG - chr5_3:1869903-1869922 None:intergenic 40.0%
ATCGAGCTGCGATTAAATTC+AGG + chr5_3:1869906-1869925 Msa0791030:three_prime_UTR 40.0%
TCGAGCTGCGATTAAATTCA+GGG + chr5_3:1869907-1869926 Msa0791030:three_prime_UTR 40.0%
TGATGCAATCTACAGGATGA+TGG + chr5_3:1870404-1870423 Msa0791030:three_prime_UTR 40.0%
AATGTATCAGAGCTGGAACA+GGG - chr5_3:1870481-1870500 None:intergenic 40.0%
TAATGTATCAGAGCTGGAAC+AGG - chr5_3:1870482-1870501 None:intergenic 40.0%
GATAGGGAGTGAATCTTAGT+TGG - chr5_3:1870617-1870636 None:intergenic 40.0%
AAGGGACGTCATTCTAGATA+TGG + chr5_3:1870668-1870687 Msa0791030:three_prime_UTR 40.0%
GCACTCCATACACTTCAAAT+AGG - chr5_3:1870974-1870993 None:intergenic 40.0%
TTATGCAGGTATACGGCAAA+TGG + chr5_3:1871425-1871444 Msa0791030:intron 40.0%
TAGCAAACTGTGAAGTGATG+AGG + chr5_3:1871554-1871573 Msa0791030:intron 40.0%
TCATTCGTGGAGCAAATTAC+AGG - chr5_3:1871764-1871783 None:intergenic 40.0%
CTATGAGAGAGAGAAATGGA+AGG + chr5_3:1872039-1872058 Msa0791030:three_prime_UTR 40.0%
GTTGCCATAAATGAAGATCC+AGG - chr5_3:1872299-1872318 None:intergenic 40.0%
! AAATGTTTCTGCAAGCTGTG+CGG - chr5_3:1872394-1872413 None:intergenic 40.0%
TGTTGCAAAATGCCCTACAA+AGG + chr5_3:1872416-1872435 Msa0791030:three_prime_UTR 40.0%
ACTTGCAGTTCATATTGGCA+TGG + chr5_3:1872528-1872547 Msa0791030:intron 40.0%
GCAAAATCAGGCTCTACTAT+TGG + chr5_3:1872560-1872579 Msa0791030:three_prime_UTR 40.0%
!! GCATTGATTCTTCCCTTAAG+AGG + chr5_3:1872582-1872601 Msa0791030:three_prime_UTR 40.0%
GCTAACTACGAGGATTATTC+AGG + chr5_3:1872874-1872893 Msa0791030:three_prime_UTR 40.0%
CAGGGGATAAGAATTATCAG+AGG + chr5_3:1872893-1872912 Msa0791030:three_prime_UTR 40.0%
TCGAGTATAAACCAGTTGGT+TGG + chr5_3:1872999-1873018 Msa0791030:three_prime_UTR 40.0%
TCTTGATACATCCAACCAAC+TGG - chr5_3:1873013-1873032 None:intergenic 40.0%
!! AGAGAGAGCATTGTGCAATA+TGG + chr5_3:1873030-1873049 Msa0791030:three_prime_UTR 40.0%
!! GAGAGAGCATTGTGCAATAT+GGG + chr5_3:1873031-1873050 Msa0791030:three_prime_UTR 40.0%
! ACCTGATTGGTTAGAGTTGA+AGG + chr5_3:1873204-1873223 Msa0791030:three_prime_UTR 40.0%
ATTGGTTAGAGTTGAAGGCT+TGG + chr5_3:1873209-1873228 Msa0791030:three_prime_UTR 40.0%
!! TAGAGCTTTGTTAACCATGG+AGG + chr5_3:1873276-1873295 Msa0791030:three_prime_UTR 40.0%
! AGTTATGTAGTTAGCCTCCA+TGG - chr5_3:1873293-1873312 None:intergenic 40.0%
GAGGATTAAAGGTAAGTGCT+TGG + chr5_3:1873321-1873340 Msa0791030:intron 40.0%
ACTCTTGAGGTAAGCATCTT+CGG + chr5_3:1873504-1873523 Msa0791030:intron 40.0%
AGATACTTGCCTGATTCTAC+CGG + chr5_3:1873851-1873870 Msa0791030:three_prime_UTR 40.0%
GATAGACTTGCAGTATTTGC+CGG - chr5_3:1873873-1873892 None:intergenic 40.0%
!! AAAGCTGATGGTTTTGCACA+TGG + chr5_3:1874045-1874064 Msa0791030:three_prime_UTR 40.0%
! GAGAGCATGGTATGTAATCT+TGG + chr5_3:1874073-1874092 Msa0791030:intron 40.0%
CATGCCTTGAAACTAAGCAA+AGG - chr5_3:1874121-1874140 None:intergenic 40.0%
GTAATACAGCTCTTTGCCTA+AGG + chr5_3:1874384-1874403 Msa0791030:intron 40.0%
GTTTCAGCAATAATGCCAAC+AGG + chr5_3:1874791-1874810 Msa0791030:three_prime_UTR 40.0%
AGCAATAATGCCAACAGGAT+TGG + chr5_3:1874796-1874815 Msa0791030:three_prime_UTR 40.0%
AATGATTGTGCCAATCCTGT+TGG - chr5_3:1874809-1874828 None:intergenic 40.0%
AGTCAATGGAAAGGAGTCAT+TGG - chr5_3:1874948-1874967 None:intergenic 40.0%
AGCCTACCAGCTATCAACAT+CGG + chr5_3:1868812-1868831 Msa0791030:intron 45.0%
!! ATTGCACCGATGTTGATAGC+TGG - chr5_3:1868821-1868840 None:intergenic 45.0%
CATCGGTGCAATTCCAATCA+AGG + chr5_3:1868829-1868848 Msa0791030:intron 45.0%
! GTCACAACTTGTTCCTTGTG+TGG + chr5_3:1868861-1868880 Msa0791030:intron 45.0%
TAAGGGTCATTACCCACACA+AGG - chr5_3:1868877-1868896 None:intergenic 45.0%
! TGACAATTTTGCCCTTGGAG+GGG + chr5_3:1868939-1868958 Msa0791030:intron 45.0%
CTCTTCCTTCTTCTTCAGTC+CGG + chr5_3:1869031-1869050 Msa0791030:intron 45.0%
GTGGAGATTGGTGTGTTCAA+CGG - chr5_3:1869141-1869160 None:intergenic 45.0%
CGAGCTGCGATTAAATTCAG+GGG + chr5_3:1869908-1869927 Msa0791030:three_prime_UTR 45.0%
GCGATTAAATTCAGGGGAGT+TGG + chr5_3:1869914-1869933 Msa0791030:three_prime_UTR 45.0%
GGAGTAACACTGCACAAATG+TGG + chr5_3:1870152-1870171 Msa0791030:three_prime_UTR 45.0%
ACTGCACAAATGTGGCAGTT+GGG + chr5_3:1870160-1870179 Msa0791030:three_prime_UTR 45.0%
CTCTGTTATATCACGGACCA+TGG - chr5_3:1870369-1870388 None:intergenic 45.0%
TCTTTGCAGGCCAAAACATC+AGG + chr5_3:1870558-1870577 Msa0791030:intron 45.0%
CATGTTCCTAGCACAGGATA+GGG - chr5_3:1870633-1870652 None:intergenic 45.0%
TCATGTTCCTAGCACAGGAT+AGG - chr5_3:1870634-1870653 None:intergenic 45.0%
ATCCTGTGCTAGGAACATGA+AGG + chr5_3:1870634-1870653 Msa0791030:three_prime_UTR 45.0%
! CTTCATCCCAGCTACTTTAG+CGG - chr5_3:1871175-1871194 None:intergenic 45.0%
AGAGATCTCGGATTTGATCC+GGG - chr5_3:1871293-1871312 None:intergenic 45.0%
CAGAGATCTCGGATTTGATC+CGG - chr5_3:1871294-1871313 None:intergenic 45.0%
TTAGAAGTCCCACACTACGA+AGG - chr5_3:1871360-1871379 None:intergenic 45.0%
AAATCAAACCTCTCCTCAGG+AGG - chr5_3:1871494-1871513 None:intergenic 45.0%
TCCTGAGGAGAGGTTTGATT+TGG + chr5_3:1871493-1871512 Msa0791030:intron 45.0%
CAGAGAAGCTAACTCATTCG+TGG - chr5_3:1871777-1871796 None:intergenic 45.0%
TGATGGCAAGCAGTCAACAA+AGG + chr5_3:1871940-1871959 Msa0791030:three_prime_UTR 45.0%
TGGCAGCAAAGTGCAAAATC+AGG + chr5_3:1872548-1872567 Msa0791030:three_prime_UTR 45.0%
TGCAGAAGCCTACTTACTGA+TGG + chr5_3:1872658-1872677 Msa0791030:intron 45.0%
CTGAAAGCAGGAACGAAAAG+AGG - chr5_3:1872795-1872814 None:intergenic 45.0%
TTCCTGCTTTCAGCTATGAG+AGG + chr5_3:1872802-1872821 Msa0791030:intron 45.0%
TCCTGCTTTCAGCTATGAGA+GGG + chr5_3:1872803-1872822 Msa0791030:intron 45.0%
GCCTTCAACTCTAACCAATC+AGG - chr5_3:1873208-1873227 None:intergenic 45.0%
ATACATCAGATGCATGAGCC+TGG + chr5_3:1873448-1873467 Msa0791030:intron 45.0%
CAGTATTTGCCGGTAGAATC+AGG - chr5_3:1873863-1873882 None:intergenic 45.0%
TGTGGCGCGAATCCTTATAA+TGG + chr5_3:1874340-1874359 Msa0791030:intron 45.0%
GGCCTAATATCTGCAACAGT+TGG + chr5_3:1874632-1874651 Msa0791030:three_prime_UTR 45.0%
AAACCACGCATGTGTATTGG+TGG + chr5_3:1874667-1874686 Msa0791030:three_prime_UTR 45.0%
!! CACCGATGTTGATAGCTGGT+AGG - chr5_3:1868817-1868836 None:intergenic 50.0%
TGACCGTCCTTGTCCTTGAT+TGG - chr5_3:1868845-1868864 None:intergenic 50.0%
!!! TTGCCCTTGGAGGGGTATTT+TGG + chr5_3:1868947-1868966 Msa0791030:intron 50.0%
GAGAACCGGACTGAAGAAGA+AGG - chr5_3:1869039-1869058 None:intergenic 50.0%
CATTAGGATCATCTCAGGGG+TGG + chr5_3:1869655-1869674 Msa0791030:three_prime_UTR 50.0%
ACACAGCTCATGTTGCTGCT+AGG + chr5_3:1869795-1869814 Msa0791030:three_prime_UTR 50.0%
AGAGGGAGTTCGAAGTACAG+AGG + chr5_3:1870131-1870150 Msa0791030:three_prime_UTR 50.0%
CACTGCACAAATGTGGCAGT+TGG + chr5_3:1870159-1870178 Msa0791030:three_prime_UTR 50.0%
GCTCGAATGGGTCAATTCCT+TGG + chr5_3:1870185-1870204 Msa0791030:three_prime_UTR 50.0%
TTTAAATTGTGGCCGCGCCA+TGG + chr5_3:1870349-1870368 Msa0791030:three_prime_UTR 50.0%
TTATATCACGGACCATGGCG+CGG - chr5_3:1870364-1870383 None:intergenic 50.0%
CAGGGTAACCATCATCCTCT+AGG - chr5_3:1870463-1870482 None:intergenic 50.0%
! TTTGGTGGCTCTCTCTTTGC+AGG + chr5_3:1870545-1870564 Msa0791030:intron 50.0%
TTCACTCCCTATCCTGTGCT+AGG + chr5_3:1870624-1870643 Msa0791030:three_prime_UTR 50.0%
CTCCTTCATGTTCCTAGCAC+AGG - chr5_3:1870639-1870658 None:intergenic 50.0%
CTGTGCTAGGAACATGAAGG+AGG + chr5_3:1870637-1870656 Msa0791030:three_prime_UTR 50.0%
ATGAAGGAGGCCAAGAGGAA+GGG + chr5_3:1870650-1870669 Msa0791030:three_prime_UTR 50.0%
AGAATGACGTCCCTTCCTCT+TGG - chr5_3:1870663-1870682 None:intergenic 50.0%
TTACAGATGTGTCGTGGTCG+AGG + chr5_3:1871128-1871147 Msa0791030:intron 50.0%
TAGCAGCCGCTAAAGTAGCT+GGG + chr5_3:1871166-1871185 Msa0791030:three_prime_UTR 50.0%
GGTGAGCTAAGGGACATTGA+AGG - chr5_3:1871327-1871346 None:intergenic 50.0%
! CTTCATTGGTGATCCTCCTG+AGG + chr5_3:1871478-1871497 Msa0791030:three_prime_UTR 50.0%
GCCAAATCAAACCTCTCCTC+AGG - chr5_3:1871497-1871516 None:intergenic 50.0%
TCCCTCTCATAGCTGAAAGC+AGG - chr5_3:1872807-1872826 None:intergenic 50.0%
AGGTTGTGCAGCTAACTACG+AGG + chr5_3:1872864-1872883 Msa0791030:three_prime_UTR 50.0%
AACTCTAGCAGGCTCTTTCC+AGG - chr5_3:1873469-1873488 None:intergenic 50.0%
GTCTGTCGCTACTACTCTTG+AGG + chr5_3:1873491-1873510 Msa0791030:three_prime_UTR 50.0%
GTCGACATGATTCTCACACG+TGG + chr5_3:1873623-1873642 Msa0791030:intron 50.0%
CATCCACCAATACACATGCG+TGG - chr5_3:1874673-1874692 None:intergenic 50.0%
CCGTGTGAGGAGAAGAGAAC+CGG - chr5_3:1869053-1869072 None:intergenic 55.0%
CCGGTTCTCTTCTCCTCACA+CGG + chr5_3:1869050-1869069 Msa0791030:CDS 55.0%
GATTGGTGTGTTCAACGGCG+AGG - chr5_3:1869136-1869155 None:intergenic 55.0%
AGGATCATCTCAGGGGTGGA+CGG + chr5_3:1869659-1869678 Msa0791030:three_prime_UTR 55.0%
TGGCAGTTGGGAAGCTCGAA+TGG + chr5_3:1870172-1870191 Msa0791030:three_prime_UTR 55.0%
GGCAGTTGGGAAGCTCGAAT+GGG + chr5_3:1870173-1870192 Msa0791030:three_prime_UTR 55.0%
GGAACATGAAGGAGGCCAAG+AGG + chr5_3:1870645-1870664 Msa0791030:three_prime_UTR 55.0%
CATGAAGGAGGCCAAGAGGA+AGG + chr5_3:1870649-1870668 Msa0791030:three_prime_UTR 55.0%
GTGGTCGAGGACAGCGTTAT+AGG + chr5_3:1871141-1871160 Msa0791030:three_prime_UTR 55.0%
CTAGCAGCCGCTAAAGTAGC+TGG + chr5_3:1871165-1871184 Msa0791030:three_prime_UTR 55.0%
!! CAGCTCGGTTGGTGAGCTAA+GGG - chr5_3:1871337-1871356 None:intergenic 55.0%
! TTGGTGATCCTCCTGAGGAG+AGG + chr5_3:1871483-1871502 Msa0791030:three_prime_UTR 55.0%
GCGACAGACGAAACTCTAGC+AGG - chr5_3:1873480-1873499 None:intergenic 55.0%
GTGTTCAACGGCGAGGTCGA+CGG - chr5_3:1869129-1869148 None:intergenic 60.0%
!! GCAGCTCGGTTGGTGAGCTA+AGG - chr5_3:1871338-1871357 None:intergenic 60.0%
CACTACGAAGGCAGCTCGGT+TGG - chr5_3:1871348-1871367 None:intergenic 60.0%
ACCGAGCTGCCTTCGTAGTG+TGG + chr5_3:1871348-1871367 Msa0791030:intron 60.0%
CCCACACTACGAAGGCAGCT+CGG - chr5_3:1871352-1871371 None:intergenic 60.0%
CCGAGCTGCCTTCGTAGTGT+GGG + chr5_3:1871349-1871368 Msa0791030:intron 60.0%
GCACATGGCGTTCGAGAGCA+TGG + chr5_3:1874060-1874079 Msa0791030:three_prime_UTR 60.0%
TTCAACGGCGAGGTCGACGG+AGG - chr5_3:1869126-1869145 None:intergenic 65.0%
! GACGGCAAGGTGGCGGTGTG+AGG - chr5_3:1869102-1869121 None:intergenic 70.0%
CGGAGGAGACGGCAAGGTGG+CGG - chr5_3:1869109-1869128 None:intergenic 70.0%
CGACGGAGGAGACGGCAAGG+TGG - chr5_3:1869112-1869131 None:intergenic 70.0%
GGTCGACGGAGGAGACGGCA+AGG - chr5_3:1869115-1869134 None:intergenic 70.0%
GGCGAGGTCGACGGAGGAGA+CGG - chr5_3:1869120-1869139 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 1868655 1874994 1868655 ID=Msa0791030;Name=Msa0791030
chr5_3 mRNA 1868655 1874994 1868655 ID=Msa0791030-mRNA-1;Parent=Msa0791030;Name=Msa0791030-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.94|0.89|0.94|0.22|0.47|19|2162|66
chr5_3 exon 1868655 1868661 1868655 ID=Msa0791030-mRNA-1:exon:701;Parent=Msa0791030-mRNA-1
chr5_3 exon 1869049 1869236 1869049 ID=Msa0791030-mRNA-1:exon:702;Parent=Msa0791030-mRNA-1
chr5_3 exon 1869365 1869419 1869365 ID=Msa0791030-mRNA-1:exon:703;Parent=Msa0791030-mRNA-1
chr5_3 exon 1869625 1869680 1869625 ID=Msa0791030-mRNA-1:exon:704;Parent=Msa0791030-mRNA-1
chr5_3 exon 1869786 1869816 1869786 ID=Msa0791030-mRNA-1:exon:705;Parent=Msa0791030-mRNA-1
chr5_3 exon 1869898 1869985 1869898 ID=Msa0791030-mRNA-1:exon:706;Parent=Msa0791030-mRNA-1
chr5_3 exon 1870068 1870213 1870068 ID=Msa0791030-mRNA-1:exon:707;Parent=Msa0791030-mRNA-1
chr5_3 exon 1870341 1870425 1870341 ID=Msa0791030-mRNA-1:exon:708;Parent=Msa0791030-mRNA-1
chr5_3 exon 1870567 1870689 1870567 ID=Msa0791030-mRNA-1:exon:709;Parent=Msa0791030-mRNA-1
chr5_3 exon 1871134 1871214 1871134 ID=Msa0791030-mRNA-1:exon:710;Parent=Msa0791030-mRNA-1
chr5_3 exon 1871433 1871504 1871433 ID=Msa0791030-mRNA-1:exon:711;Parent=Msa0791030-mRNA-1
chr5_3 exon 1871900 1872092 1871900 ID=Msa0791030-mRNA-1:exon:712;Parent=Msa0791030-mRNA-1
chr5_3 exon 1872370 1872437 1872370 ID=Msa0791030-mRNA-1:exon:713;Parent=Msa0791030-mRNA-1
chr5_3 exon 1872536 1872603 1872536 ID=Msa0791030-mRNA-1:exon:714;Parent=Msa0791030-mRNA-1
chr5_3 exon 1872815 1873331 1872815 ID=Msa0791030-mRNA-1:exon:715;Parent=Msa0791030-mRNA-1
chr5_3 exon 1873452 1873512 1873452 ID=Msa0791030-mRNA-1:exon:716;Parent=Msa0791030-mRNA-1
chr5_3 exon 1873839 1873908 1873839 ID=Msa0791030-mRNA-1:exon:717;Parent=Msa0791030-mRNA-1
chr5_3 exon 1874000 1874081 1874000 ID=Msa0791030-mRNA-1:exon:718;Parent=Msa0791030-mRNA-1
chr5_3 exon 1874623 1874994 1874623 ID=Msa0791030-mRNA-1:exon:719;Parent=Msa0791030-mRNA-1
chr5_3 CDS 1868655 1868661 1868655 ID=Msa0791030-mRNA-1:cds;Parent=Msa0791030-mRNA-1
chr5_3 CDS 1869049 1869236 1869049 ID=Msa0791030-mRNA-1:cds;Parent=Msa0791030-mRNA-1
chr5_3 CDS 1869365 1869370 1869365 ID=Msa0791030-mRNA-1:cds;Parent=Msa0791030-mRNA-1
chr5_3 three_prime_UTR 1869371 1869419 1869371 ID=Msa0791030-mRNA-1:three_prime_utr;Parent=Msa0791030-mRNA-1
chr5_3 three_prime_UTR 1869625 1869680 1869625 ID=Msa0791030-mRNA-1:three_prime_utr;Parent=Msa0791030-mRNA-1
chr5_3 three_prime_UTR 1869786 1869816 1869786 ID=Msa0791030-mRNA-1:three_prime_utr;Parent=Msa0791030-mRNA-1
chr5_3 three_prime_UTR 1869898 1869985 1869898 ID=Msa0791030-mRNA-1:three_prime_utr;Parent=Msa0791030-mRNA-1
chr5_3 three_prime_UTR 1870068 1870213 1870068 ID=Msa0791030-mRNA-1:three_prime_utr;Parent=Msa0791030-mRNA-1
chr5_3 three_prime_UTR 1870341 1870425 1870341 ID=Msa0791030-mRNA-1:three_prime_utr;Parent=Msa0791030-mRNA-1
chr5_3 three_prime_UTR 1870567 1870689 1870567 ID=Msa0791030-mRNA-1:three_prime_utr;Parent=Msa0791030-mRNA-1
chr5_3 three_prime_UTR 1871134 1871214 1871134 ID=Msa0791030-mRNA-1:three_prime_utr;Parent=Msa0791030-mRNA-1
chr5_3 three_prime_UTR 1871433 1871504 1871433 ID=Msa0791030-mRNA-1:three_prime_utr;Parent=Msa0791030-mRNA-1
chr5_3 three_prime_UTR 1871900 1872092 1871900 ID=Msa0791030-mRNA-1:three_prime_utr;Parent=Msa0791030-mRNA-1
chr5_3 three_prime_UTR 1872370 1872437 1872370 ID=Msa0791030-mRNA-1:three_prime_utr;Parent=Msa0791030-mRNA-1
chr5_3 three_prime_UTR 1872536 1872603 1872536 ID=Msa0791030-mRNA-1:three_prime_utr;Parent=Msa0791030-mRNA-1
chr5_3 three_prime_UTR 1872815 1873331 1872815 ID=Msa0791030-mRNA-1:three_prime_utr;Parent=Msa0791030-mRNA-1
chr5_3 three_prime_UTR 1873452 1873512 1873452 ID=Msa0791030-mRNA-1:three_prime_utr;Parent=Msa0791030-mRNA-1
chr5_3 three_prime_UTR 1873839 1873908 1873839 ID=Msa0791030-mRNA-1:three_prime_utr;Parent=Msa0791030-mRNA-1
chr5_3 three_prime_UTR 1874000 1874081 1874000 ID=Msa0791030-mRNA-1:three_prime_utr;Parent=Msa0791030-mRNA-1
chr5_3 three_prime_UTR 1874623 1874994 1874623 ID=Msa0791030-mRNA-1:three_prime_utr;Parent=Msa0791030-mRNA-1
Gene Sequence

>Msa0791030

ATGCAAATCCGGTTCTCTTCTCCTCACACGGTAAACAAAAAAACGGGTTCTCTTCTTCCTCACACCGCCACCTTGCCGTCTCCTCCGTCGACCTCGCCGTTGAACACACCAATCTCCACCGTTTTCTTCTTTCTCAGTGTGCGACGTCTTCTTCGTTTTGCTTCTTCTTCCGTTTGTCTCTATCATCAATCAAAGTTCTGA
Protein sequence

>Msa0791030

MQIRFSSPHTVNKKTGSLLPHTATLPSPPSTSPLNTPISTVFFFLSVRRLLRFASSSVCLYHQSKF*