AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0568810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568810 MtrunA17_Chr8g0383751 95.753 259 8 1 1 259 10 265 0.0 500
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568810 AT5G09820.2 54.902 255 99 2 12 254 21 271 1.43e-90 269
Msa0568810 AT5G09820.1 54.506 233 90 2 12 232 21 249 2.32e-78 238
Msa0568810 AT5G09820.3 51.042 192 78 2 12 191 21 208 8.21e-54 174
Msa0568810 AT4G22240.1 30.131 229 116 7 61 250 77 300 3.32e-17 80.1
Msa0568810 AT4G04020.1 28.829 222 109 7 70 250 95 308 5.50e-16 76.6
Msa0568810 AT3G26070.1 30.348 201 96 8 64 254 69 235 1.64e-14 71.2

Find 82 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATAGCACTATCTCTATTT+TGG 0.111980 4_1:-70446618 Msa0568810:CDS
TATTCTGTATTTGATCTTAA+AGG 0.149815 4_1:-70447382 Msa0568810:five_prime_UTR
AAAAGGGTGTCTCAAAATTT+TGG 0.199940 4_1:+70447468 None:intergenic
AGTAGGAGATTTAACTGTTT+TGG 0.236034 4_1:+70445774 None:intergenic
GAAGTTAGAAATTGAAAGTT+TGG 0.249564 4_1:-70446947 Msa0568810:CDS
GGAATCAACAGAGGGATATT+TGG 0.264142 4_1:-70446985 Msa0568810:CDS
ATCATGAAACTTCAAAGATT+TGG 0.272932 4_1:-70447290 Msa0568810:CDS
TGGATAAACACTTCAAGATT+TGG 0.298180 4_1:-70447248 Msa0568810:CDS
TCTAGTTCTAGAGTTGGTTC+TGG 0.326515 4_1:+70446895 None:intergenic
TTGAAGTTTCATGATATTCA+TGG 0.326931 4_1:+70447298 None:intergenic
CACAGTTGATGAACGTGTTT+CGG 0.335145 4_1:-70445529 Msa0568810:intron
TGTTGGCCATGATTCATTCT+AGG 0.344158 4_1:-70445049 Msa0568810:three_prime_UTR
GATTTGGTGAGAAGCCATTA+TGG 0.349218 4_1:-70447232 Msa0568810:CDS
CAAATACAGAATAATGAAAC+AGG 0.355653 4_1:+70447392 None:intergenic
AAAGTTGCAGAACAATCTTC+TGG 0.358341 4_1:-70447188 Msa0568810:CDS
CCAATGCAATAAAGTCTCTT+AGG 0.361573 4_1:+70446573 None:intergenic
GACCACCTAGTAATCTTTCA+TGG 0.363929 4_1:-70447268 Msa0568810:CDS
CTAAGAGACTTTATTGCATT+GGG 0.375979 4_1:-70446572 Msa0568810:CDS
GCAACTTTAATGATAGTAAT+GGG 0.377037 4_1:+70447203 None:intergenic
TCTAGAGTTGGTTCTGGAGT+TGG 0.385057 4_1:+70446901 None:intergenic
GGATCAAGAAGGACAAAGTT+AGG 0.406396 4_1:-70446596 Msa0568810:CDS
GTGATCAAGTTCAATGCAAA+AGG 0.408117 4_1:-70445850 Msa0568810:CDS
CCTAAGAGACTTTATTGCAT+TGG 0.415989 4_1:-70446573 Msa0568810:CDS
CGAAGTTTGTTTCGACATAG+TGG 0.440289 4_1:-70445125 Msa0568810:three_prime_UTR
TCTTTGTAATATACCTGATC+AGG 0.443928 4_1:+70445637 None:intergenic
GGAAGGTGGATGGGTGTTGG+AGG 0.446955 4_1:-70446646 Msa0568810:intron
TTCCACAATCACTCCTGATC+AGG 0.448356 4_1:-70445650 Msa0568810:intron
TGCAACTTTAATGATAGTAA+TGG 0.449400 4_1:+70447202 None:intergenic
AAGAGAGCTTTACCAGGCTC+TGG 0.452031 4_1:-70447126 Msa0568810:CDS
TGATTCTCATGTGAGTCCTC+TGG 0.455246 4_1:-70447330 Msa0568810:CDS
GTAATGGGTCTAAACCATAA+TGG 0.465210 4_1:+70447218 None:intergenic
CAAAGGCAATATCTTTGTGT+TGG 0.468289 4_1:-70445274 Msa0568810:CDS
GGGGTTGTGTCGAGCGGAAG+GGG 0.469291 4_1:+70445094 None:intergenic
GGGATATTTGGAATTCCATC+TGG 0.474487 4_1:-70446973 Msa0568810:CDS
GTTGATGACAACATGAGAAT+AGG 0.478063 4_1:-70445306 Msa0568810:CDS
TTTATCCATGAAAGATTACT+AGG 0.478881 4_1:+70447263 None:intergenic
ACATGAGAATCATTCATTGA+TGG 0.480197 4_1:+70447341 None:intergenic
ACTGGAAGGTGGATGGGTGT+TGG 0.486174 4_1:-70446649 Msa0568810:intron
GCAGAACAATCTTCTGGCTA+TGG 0.491323 4_1:-70447182 Msa0568810:CDS
ACCTTCTCTAGTTCTAGAGT+TGG 0.492031 4_1:+70446889 None:intergenic
GACAAAATTACTTTCCGTGA+AGG 0.498911 4_1:+70445195 None:intergenic
TTCTATTACTGGAAGGTGGA+TGG 0.515531 4_1:-70446656 Msa0568810:intron
ATTTCTAACTTCTTGCCAGA+TGG 0.516677 4_1:+70446958 None:intergenic
AGATGCTACCTTCCAGAGCC+TGG 0.516686 4_1:+70447114 None:intergenic
GTAACTTGTATCCATTGTGT+TGG 0.522077 4_1:-70445066 Msa0568810:intron
TTTGGAAGCAATCTTGAATG+AGG 0.522835 4_1:+70445792 None:intergenic
TCTATTACTGGAAGGTGGAT+GGG 0.533432 4_1:-70446655 Msa0568810:intron
GAATAATGAAACAGGGTAGA+GGG 0.538460 4_1:+70447400 None:intergenic
AGAATAATGAAACAGGGTAG+AGG 0.550244 4_1:+70447399 None:intergenic
ATACTTCCTAGAATGAATCA+TGG 0.557877 4_1:+70445043 None:intergenic
GTGATTTCTAGCCATCCCTC+TGG 0.559113 4_1:+70445473 None:intergenic
TCGAAACAAACTTCGAATCC+CGG 0.559452 4_1:+70445133 None:intergenic
TGGGGTTGTGTCGAGCGGAA+GGG 0.564105 4_1:+70445093 None:intergenic
GAAGTTTGTTTCGACATAGT+GGG 0.564277 4_1:-70445124 Msa0568810:three_prime_UTR
TACCTGATCAGGAGTGATTG+TGG 0.569292 4_1:+70445648 None:intergenic
TTGGGCATCTTCAATCCAGA+GGG 0.577853 4_1:-70445488 Msa0568810:CDS
ACCAACTCTAGAACTAGAGA+AGG 0.579053 4_1:-70446890 Msa0568810:intron
GAGCTTTACCAGGCTCTGGA+AGG 0.579893 4_1:-70447122 Msa0568810:intron
TGATCAAGTTCAATGCAAAA+GGG 0.581171 4_1:-70445849 Msa0568810:CDS
ATGACAACATGAGAATAGGA+AGG 0.590421 4_1:-70445302 Msa0568810:CDS
ATGAATCATGGCCAACACAA+TGG 0.591223 4_1:+70445055 None:intergenic
TGAAACAGGGTAGAGGGTCA+TGG 0.600960 4_1:+70447406 None:intergenic
GAAGAAAAGAGAGCTTTACC+AGG 0.603570 4_1:-70447132 Msa0568810:CDS
TTAGTTGAAGATGAAGCACT+TGG 0.610602 4_1:-70447158 Msa0568810:CDS
TCAGACTATTGATAAAGCCA+AGG 0.616602 4_1:-70446540 Msa0568810:intron
GTTGGGCATCTTCAATCCAG+AGG 0.618538 4_1:-70445489 Msa0568810:CDS
GTGTGGAGAGCTAAGTATTG+AGG 0.635837 4_1:-70445815 Msa0568810:CDS
TGACAACATGAGAATAGGAA+GGG 0.637950 4_1:-70445301 Msa0568810:CDS
CTTTCCGTGAAGGAAACATG+TGG 0.639124 4_1:+70445205 None:intergenic
GCATCTTCAATCCAGAGGGA+TGG 0.641660 4_1:-70445484 Msa0568810:CDS
GATAGGTCTATCGAGACATG+TGG 0.649263 4_1:+70447552 None:intergenic
TGTTTGAAGGAATCAACAGA+GGG 0.669440 4_1:-70446993 Msa0568810:intron
ACTTGAAAGAACAACGTGCG+AGG 0.669525 4_1:-70447437 Msa0568810:five_prime_UTR
AGAATAGGAAGGGATGACAA+AGG 0.678331 4_1:-70445291 Msa0568810:CDS
CTAACATGTACATAGTTCCA+CGG 0.686297 4_1:-70447494 Msa0568810:five_prime_UTR
AAAGGGTTGATATTGTTGTG+TGG 0.686655 4_1:-70445832 Msa0568810:CDS
GTGTTTGAAGGAATCAACAG+AGG 0.697719 4_1:-70446994 Msa0568810:intron
TTCATGGTTCTACAAACCAG+AGG 0.699055 4_1:+70447314 None:intergenic
ATCCATGAAAGATTACTAGG+TGG 0.706915 4_1:+70447266 None:intergenic
AACAGGGTAGAGGGTCATGG+TGG 0.709521 4_1:+70447409 None:intergenic
AAATACAGAATAATGAAACA+GGG 0.717835 4_1:+70447393 None:intergenic
TTTGAAAATGAAGAGCAAAG+CGG 0.731147 4_1:-70445878 Msa0568810:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATAAGTAGTTATTATT+TGG + chr4_1:70446749-70446768 None:intergenic 10.0%
!!! AAAAATTATGATATTTTGTT+GGG - chr4_1:70446956-70446975 Msa0568810:CDS 10.0%
!!! TATTTGATTTTTTCTAATCA+AGG + chr4_1:70444941-70444960 None:intergenic 15.0%
!! GTTTAAAAAAATTGTGATTT+AGG + chr4_1:70445744-70445763 None:intergenic 15.0%
!! ACAAAATCTACATTAAATTA+TGG + chr4_1:70446300-70446319 None:intergenic 15.0%
!! TATTGAGTTTAATTAAACAT+TGG - chr4_1:70446553-70446572 Msa0568810:CDS 15.0%
!! AGGAAAAATTAATTAAACAT+AGG + chr4_1:70446904-70446923 None:intergenic 15.0%
!!! GAAAAATTATGATATTTTGT+TGG - chr4_1:70446955-70446974 Msa0568810:CDS 15.0%
!!! ATTTTTTCTAATCAAGGTTT+TGG + chr4_1:70444935-70444954 None:intergenic 20.0%
!!! TTTCAAGTTTTCTGATAAAA+GGG + chr4_1:70445013-70445032 None:intergenic 20.0%
!! AAATACAGAATAATGAAACA+GGG + chr4_1:70445072-70445091 None:intergenic 20.0%
!! TATTCTGTATTTGATCTTAA+AGG - chr4_1:70445080-70445099 Msa0568810:intron 20.0%
!!! AAAGAGTAATTTGTTTGAAA+TGG - chr4_1:70445435-70445454 Msa0568810:intron 20.0%
!!! AAGAGTAATTTGTTTGAAAT+GGG - chr4_1:70445436-70445455 Msa0568810:intron 20.0%
!!! TCAATTGTTTTACAAATTAG+AGG - chr4_1:70446212-70446231 Msa0568810:intron 20.0%
!!! CAATTGTTTTACAAATTAGA+GGG - chr4_1:70446213-70446232 Msa0568810:intron 20.0%
!!! TTGTCTCTATTTTTTTTTCT+TGG - chr4_1:70447518-70447537 Msa0568810:five_prime_UTR 20.0%
!!! TGTCTCTATTTTTTTTTCTT+GGG - chr4_1:70447519-70447538 Msa0568810:five_prime_UTR 20.0%
!!! CTTTCAAGTTTTCTGATAAA+AGG + chr4_1:70445014-70445033 None:intergenic 25.0%
! CAAATACAGAATAATGAAAC+AGG + chr4_1:70445073-70445092 None:intergenic 25.0%
! TTGAAGTTTCATGATATTCA+TGG + chr4_1:70445167-70445186 None:intergenic 25.0%
! ATCATGAAACTTCAAAGATT+TGG - chr4_1:70445172-70445191 Msa0568810:three_prime_UTR 25.0%
! TTTATCCATGAAAGATTACT+AGG + chr4_1:70445202-70445221 None:intergenic 25.0%
! GCAACTTTAATGATAGTAAT+GGG + chr4_1:70445262-70445281 None:intergenic 25.0%
! TGCAACTTTAATGATAGTAA+TGG + chr4_1:70445263-70445282 None:intergenic 25.0%
! GAAGTTAGAAATTGAAAGTT+TGG - chr4_1:70445515-70445534 Msa0568810:CDS 25.0%
!!! CAATGTTTTTTATGTCTTTG+CGG + chr4_1:70445712-70445731 None:intergenic 25.0%
!! TCATGTTATGTTTCTATTAC+TGG - chr4_1:70445795-70445814 Msa0568810:CDS 25.0%
!! TTATAGCACTATCTCTATTT+TGG - chr4_1:70445844-70445863 Msa0568810:CDS 25.0%
!! TATAGCACTATCTCTATTTT+GGG - chr4_1:70445845-70445864 Msa0568810:CDS 25.0%
! TCTCTAAGTCAAAAGAAAAA+GGG + chr4_1:70445988-70446007 None:intergenic 25.0%
! ATCTCTAAGTCAAAAGAAAA+AGG + chr4_1:70445989-70446008 None:intergenic 25.0%
! AAAAATACGAACTTTGTGAT+TGG + chr4_1:70446065-70446084 None:intergenic 25.0%
!! AATTATGGACCATATGATTT+TGG + chr4_1:70446285-70446304 None:intergenic 25.0%
! AAAATACTAAGCTTGAAATC+TGG - chr4_1:70446337-70446356 Msa0568810:intron 25.0%
!!! ACTTTCTACGATAGTTTTTT+CGG + chr4_1:70446399-70446418 None:intergenic 25.0%
! AATAGACGAGATTATTATGT+TGG + chr4_1:70446524-70446543 None:intergenic 25.0%
! AAAACCAATCAACGAAAATT+AGG + chr4_1:70447019-70447038 None:intergenic 25.0%
! ATGTGGAAAACAAAAAAGAA+CGG + chr4_1:70447243-70447262 None:intergenic 25.0%
!! AAAGTAATTTTGTCGAAACA+TGG - chr4_1:70447276-70447295 Msa0568810:CDS 25.0%
!!! TTCTAATCAAGGTTTTGGAT+AGG + chr4_1:70444930-70444949 None:intergenic 30.0%
!!! AAAAGGGTGTCTCAAAATTT+TGG + chr4_1:70444997-70445016 None:intergenic 30.0%
ACATGAGAATCATTCATTGA+TGG + chr4_1:70445124-70445143 None:intergenic 30.0%
TGGATAAACACTTCAAGATT+TGG - chr4_1:70445214-70445233 Msa0568810:three_prime_UTR 30.0%
CATAAAAAACATTGATGTCG+AGG - chr4_1:70445718-70445737 Msa0568810:intron 30.0%
! GTTATGTTTCTATTACTGGA+AGG - chr4_1:70445799-70445818 Msa0568810:CDS 30.0%
CTAAGAGACTTTATTGCATT+GGG - chr4_1:70445890-70445909 Msa0568810:intron 30.0%
CTAGAAATTAAGAGCAAACA+CGG + chr4_1:70446113-70446132 None:intergenic 30.0%
! GTTTTACAAATTAGAGGGTT+TGG - chr4_1:70446218-70446237 Msa0568810:intron 30.0%
!!! AGTTTTTTCGGTTCTAATTC+TGG + chr4_1:70446387-70446406 None:intergenic 30.0%
TATCGTAGAAAGTGAACTAT+AGG - chr4_1:70446406-70446425 Msa0568810:intron 30.0%
GACTCAAACTTTAACAATGT+AGG + chr4_1:70446441-70446460 None:intergenic 30.0%
TTTGAAAATGAAGAGCAAAG+CGG - chr4_1:70446584-70446603 Msa0568810:CDS 30.0%
TGATCAAGTTCAATGCAAAA+GGG - chr4_1:70446613-70446632 Msa0568810:CDS 30.0%
! AGTAGGAGATTTAACTGTTT+TGG + chr4_1:70446691-70446710 None:intergenic 30.0%
TAAATCTCCTACTCTTTGTT+TGG - chr4_1:70446698-70446717 Msa0568810:intron 30.0%
TTCTACTTCAAATTCACAGA+GGG - chr4_1:70446770-70446789 Msa0568810:intron 30.0%
TCTTTGTAATATACCTGATC+AGG + chr4_1:70446828-70446847 None:intergenic 30.0%
! GTACATTTCCTTTTTGTTCT+TGG - chr4_1:70446853-70446872 Msa0568810:intron 30.0%
! TTGATTAGCCAAGAACAAAA+AGG + chr4_1:70446864-70446883 None:intergenic 30.0%
! GTATCCTAATTTTCGTTGAT+TGG - chr4_1:70447012-70447031 Msa0568810:intron 30.0%
ATACTTCCTAGAATGAATCA+TGG + chr4_1:70447422-70447441 None:intergenic 30.0%
CTAACATGTACATAGTTCCA+CGG - chr4_1:70444968-70444987 Msa0568810:three_prime_UTR 35.0%
GAATAATGAAACAGGGTAGA+GGG + chr4_1:70445065-70445084 None:intergenic 35.0%
AGAATAATGAAACAGGGTAG+AGG + chr4_1:70445066-70445085 None:intergenic 35.0%
ATCCATGAAAGATTACTAGG+TGG + chr4_1:70445199-70445218 None:intergenic 35.0%
!! GTAATGGGTCTAAACCATAA+TGG + chr4_1:70445247-70445266 None:intergenic 35.0%
AAAGTTGCAGAACAATCTTC+TGG - chr4_1:70445274-70445293 Msa0568810:CDS 35.0%
! TTAGTTGAAGATGAAGCACT+TGG - chr4_1:70445304-70445323 Msa0568810:CDS 35.0%
GGGTAAACAAATGTGTTTGA+AGG - chr4_1:70445456-70445475 Msa0568810:intron 35.0%
TGTTTGAAGGAATCAACAGA+GGG - chr4_1:70445469-70445488 Msa0568810:intron 35.0%
ATTTCTAACTTCTTGCCAGA+TGG + chr4_1:70445507-70445526 None:intergenic 35.0%
!! TCAAGGCTTTAAAATCGACA+CGG - chr4_1:70445605-70445624 Msa0568810:intron 35.0%
! ATGTTTCTATTACTGGAAGG+TGG - chr4_1:70445802-70445821 Msa0568810:CDS 35.0%
!!! TCTCTATTTTGGGATCAAGA+AGG - chr4_1:70445855-70445874 Msa0568810:CDS 35.0%
CCAATGCAATAAAGTCTCTT+AGG + chr4_1:70445892-70445911 None:intergenic 35.0%
CCTAAGAGACTTTATTGCAT+TGG - chr4_1:70445889-70445908 Msa0568810:intron 35.0%
TCAGACTATTGATAAAGCCA+AGG - chr4_1:70445922-70445941 Msa0568810:intron 35.0%
!! TATGATTTTGGTCAGACAGA+CGG + chr4_1:70446273-70446292 None:intergenic 35.0%
TCTGTCTGACCAAAATCATA+TGG - chr4_1:70446273-70446292 Msa0568810:intron 35.0%
!! CTGGATTGTTTGATTTTGAC+CGG - chr4_1:70446356-70446375 Msa0568810:intron 35.0%
GTGATCAAGTTCAATGCAAA+AGG - chr4_1:70446612-70446631 Msa0568810:CDS 35.0%
!! AAAGGGTTGATATTGTTGTG+TGG - chr4_1:70446630-70446649 Msa0568810:CDS 35.0%
TTTGGAAGCAATCTTGAATG+AGG + chr4_1:70446673-70446692 None:intergenic 35.0%
AAAGCAACCAAACAAAGAGT+AGG + chr4_1:70446708-70446727 None:intergenic 35.0%
CTTCTACTTCAAATTCACAG+AGG - chr4_1:70446769-70446788 Msa0568810:intron 35.0%
!! GTTGATGACAACATGAGAAT+AGG - chr4_1:70447156-70447175 Msa0568810:CDS 35.0%
ATGACAACATGAGAATAGGA+AGG - chr4_1:70447160-70447179 Msa0568810:CDS 35.0%
TGACAACATGAGAATAGGAA+GGG - chr4_1:70447161-70447180 Msa0568810:CDS 35.0%
CAAAGGCAATATCTTTGTGT+TGG - chr4_1:70447188-70447207 Msa0568810:CDS 35.0%
! TTTTCCACATGTTTCCTTCA+CGG - chr4_1:70447253-70447272 Msa0568810:CDS 35.0%
GACAAAATTACTTTCCGTGA+AGG + chr4_1:70447270-70447289 None:intergenic 35.0%
! AATTTTGTCGAAACATGGTC+AGG - chr4_1:70447281-70447300 Msa0568810:CDS 35.0%
! TTGTAGACACTTTTATCAGC+CGG - chr4_1:70447310-70447329 Msa0568810:CDS 35.0%
! GAAGTTTGTTTCGACATAGT+GGG - chr4_1:70447338-70447357 Msa0568810:CDS 35.0%
ATGGATACAAGTTACCAACT+GGG + chr4_1:70447391-70447410 None:intergenic 35.0%
AATGGATACAAGTTACCAAC+TGG + chr4_1:70447392-70447411 None:intergenic 35.0%
! GTAACTTGTATCCATTGTGT+TGG - chr4_1:70447396-70447415 Msa0568810:five_prime_UTR 35.0%
!! TCTCAAAATTTTGGTGACCG+TGG + chr4_1:70444988-70445007 None:intergenic 40.0%
! TTCATGGTTCTACAAACCAG+AGG + chr4_1:70445151-70445170 None:intergenic 40.0%
GACCACCTAGTAATCTTTCA+TGG - chr4_1:70445194-70445213 Msa0568810:three_prime_UTR 40.0%
!! GATTTGGTGAGAAGCCATTA+TGG - chr4_1:70445230-70445249 Msa0568810:exon 40.0%
GAAGAAAAGAGAGCTTTACC+AGG - chr4_1:70445330-70445349 Msa0568810:intron 40.0%
TTGTGAGCTATTGTTAGCAC+TGG - chr4_1:70445400-70445419 Msa0568810:intron 40.0%
!! GTTAGCACTGGTTAACAAAG+TGG - chr4_1:70445412-70445431 Msa0568810:intron 40.0%
GTGTTTGAAGGAATCAACAG+AGG - chr4_1:70445468-70445487 Msa0568810:intron 40.0%
GGAATCAACAGAGGGATATT+TGG - chr4_1:70445477-70445496 Msa0568810:CDS 40.0%
! GGGATATTTGGAATTCCATC+TGG - chr4_1:70445489-70445508 Msa0568810:CDS 40.0%
!! TCTAGTTCTAGAGTTGGTTC+TGG + chr4_1:70445570-70445589 None:intergenic 40.0%
!! ACCAACTCTAGAACTAGAGA+AGG - chr4_1:70445572-70445591 Msa0568810:intron 40.0%
!! ACCTTCTCTAGTTCTAGAGT+TGG + chr4_1:70445576-70445595 None:intergenic 40.0%
GAGAAGGTAACTTCATGTCA+AGG - chr4_1:70445588-70445607 Msa0568810:intron 40.0%
CTCCATAATATCAAGAGTCG+CGG + chr4_1:70445641-70445660 None:intergenic 40.0%
TGGAGAGTTCTCGTTAAATG+TGG - chr4_1:70445656-70445675 Msa0568810:CDS 40.0%
! CTCGTTAAATGTGGTTGATG+CGG - chr4_1:70445665-70445684 Msa0568810:CDS 40.0%
TTCTATTACTGGAAGGTGGA+TGG - chr4_1:70445806-70445825 Msa0568810:CDS 40.0%
TCTATTACTGGAAGGTGGAT+GGG - chr4_1:70445807-70445826 Msa0568810:CDS 40.0%
GGATCAAGAAGGACAAAGTT+AGG - chr4_1:70445866-70445885 Msa0568810:CDS 40.0%
AGTGCGTTGTATTTGTACCT+TGG + chr4_1:70445942-70445961 None:intergenic 40.0%
! GGTTCTAATTCTGGATTGTC+CGG + chr4_1:70446378-70446397 None:intergenic 40.0%
! TTGAGTCTTTTAGCACATGC+AGG - chr4_1:70446454-70446473 Msa0568810:intron 40.0%
! TGAGTCTTTTAGCACATGCA+GGG - chr4_1:70446455-70446474 Msa0568810:intron 40.0%
!! CACAGTTGATGAACGTGTTT+CGG - chr4_1:70446933-70446952 Msa0568810:CDS 40.0%
AGAATAGGAAGGGATGACAA+AGG - chr4_1:70447171-70447190 Msa0568810:CDS 40.0%
! TGTAGACACTTTTATCAGCC+GGG - chr4_1:70447311-70447330 Msa0568810:CDS 40.0%
TCGAAACAAACTTCGAATCC+CGG + chr4_1:70447332-70447351 None:intergenic 40.0%
! CGAAGTTTGTTTCGACATAG+TGG - chr4_1:70447337-70447356 Msa0568810:CDS 40.0%
TGGATACAAGTTACCAACTG+GGG + chr4_1:70447390-70447409 None:intergenic 40.0%
ATGAATCATGGCCAACACAA+TGG + chr4_1:70447410-70447429 None:intergenic 40.0%
TGTTGGCCATGATTCATTCT+AGG - chr4_1:70447413-70447432 Msa0568810:five_prime_UTR 40.0%
GATAGGTCTATCGAGACATG+TGG + chr4_1:70444913-70444932 None:intergenic 45.0%
ACTTGAAAGAACAACGTGCG+AGG - chr4_1:70445025-70445044 Msa0568810:three_prime_UTR 45.0%
TGATTCTCATGTGAGTCCTC+TGG - chr4_1:70445132-70445151 Msa0568810:three_prime_UTR 45.0%
! GCAGAACAATCTTCTGGCTA+TGG - chr4_1:70445280-70445299 Msa0568810:CDS 45.0%
!! TCTAGAGTTGGTTCTGGAGT+TGG + chr4_1:70445564-70445583 None:intergenic 45.0%
TGCCGCGACTCTTGATATTA+TGG - chr4_1:70445636-70445655 Msa0568810:intron 45.0%
GGTTTAGATGTGGCTAACTG+CGG + chr4_1:70446252-70446271 None:intergenic 45.0%
TCAGACAGACGGTTTAGATG+TGG + chr4_1:70446262-70446281 None:intergenic 45.0%
! GTGTGGAGAGCTAAGTATTG+AGG - chr4_1:70446647-70446666 Msa0568810:intron 45.0%
TTCCACAATCACTCCTGATC+AGG - chr4_1:70446812-70446831 Msa0568810:intron 45.0%
TACCTGATCAGGAGTGATTG+TGG + chr4_1:70446817-70446836 None:intergenic 45.0%
CATCAACTGTGCATGCAAGA+AGG + chr4_1:70446924-70446943 None:intergenic 45.0%
TTGGGCATCTTCAATCCAGA+GGG - chr4_1:70446974-70446993 Msa0568810:CDS 45.0%
CTTTCCGTGAAGGAAACATG+TGG + chr4_1:70447260-70447279 None:intergenic 45.0%
TGAAACAGGGTAGAGGGTCA+TGG + chr4_1:70445059-70445078 None:intergenic 50.0%
AAGAGAGCTTTACCAGGCTC+TGG - chr4_1:70445336-70445355 Msa0568810:intron 50.0%
!! GGTTGATGCGGTGTCATAAG+CGG - chr4_1:70445677-70445696 Msa0568810:intron 50.0%
! GGTGTCATAAGCGGCTGTTA+TGG - chr4_1:70445686-70445705 Msa0568810:intron 50.0%
GTTGGGCATCTTCAATCCAG+AGG - chr4_1:70446973-70446992 Msa0568810:CDS 50.0%
GCATCTTCAATCCAGAGGGA+TGG - chr4_1:70446978-70446997 Msa0568810:CDS 50.0%
!! GTGATTTCTAGCCATCCCTC+TGG + chr4_1:70446992-70447011 None:intergenic 50.0%
AACAGGGTAGAGGGTCATGG+TGG + chr4_1:70445056-70445075 None:intergenic 55.0%
!! GAGCTTTACCAGGCTCTGGA+AGG - chr4_1:70445340-70445359 Msa0568810:intron 55.0%
AGATGCTACCTTCCAGAGCC+TGG + chr4_1:70445351-70445370 None:intergenic 55.0%
ACTGGAAGGTGGATGGGTGT+TGG - chr4_1:70445813-70445832 Msa0568810:CDS 55.0%
!! GGAAGGTGGATGGGTGTTGG+AGG - chr4_1:70445816-70445835 Msa0568810:CDS 60.0%
TGGGGTTGTGTCGAGCGGAA+GGG + chr4_1:70447372-70447391 None:intergenic 60.0%
CCAACTGGGGTTGTGTCGAG+CGG + chr4_1:70447377-70447396 None:intergenic 60.0%
GGGGTTGTGTCGAGCGGAAG+GGG + chr4_1:70447371-70447390 None:intergenic 65.0%
CTGGGGTTGTGTCGAGCGGA+AGG + chr4_1:70447373-70447392 None:intergenic 65.0%
CCGCTCGACACAACCCCAGT+TGG - chr4_1:70447374-70447393 Msa0568810:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 70444903 70447581 70444903 ID=Msa0568810;Name=Msa0568810
chr4_1 mRNA 70444903 70447581 70444903 ID=Msa0568810-mRNA-1;Parent=Msa0568810;Name=Msa0568810-mRNA-1;_AED=0.12;_eAED=0.12;_QI=224|1|1|1|0.85|0.75|8|319|259
chr4_1 exon 70444903 70445084 70444903 ID=Msa0568810-mRNA-1:exon:23781;Parent=Msa0568810-mRNA-1
chr4_1 exon 70445108 70445332 70445108 ID=Msa0568810-mRNA-1:exon:23780;Parent=Msa0568810-mRNA-1
chr4_1 exon 70445473 70445546 70445473 ID=Msa0568810-mRNA-1:exon:23779;Parent=Msa0568810-mRNA-1
chr4_1 exon 70445651 70445695 70445651 ID=Msa0568810-mRNA-1:exon:23778;Parent=Msa0568810-mRNA-1
chr4_1 exon 70445789 70445887 70445789 ID=Msa0568810-mRNA-1:exon:23777;Parent=Msa0568810-mRNA-1
chr4_1 exon 70446541 70446663 70446541 ID=Msa0568810-mRNA-1:exon:23776;Parent=Msa0568810-mRNA-1
chr4_1 exon 70446891 70447006 70446891 ID=Msa0568810-mRNA-1:exon:23775;Parent=Msa0568810-mRNA-1
chr4_1 exon 70447123 70447581 70447123 ID=Msa0568810-mRNA-1:exon:23774;Parent=Msa0568810-mRNA-1
chr4_1 five_prime_UTR 70447358 70447581 70447358 ID=Msa0568810-mRNA-1:five_prime_utr;Parent=Msa0568810-mRNA-1
chr4_1 CDS 70447123 70447357 70447123 ID=Msa0568810-mRNA-1:cds;Parent=Msa0568810-mRNA-1
chr4_1 CDS 70446891 70447006 70446891 ID=Msa0568810-mRNA-1:cds;Parent=Msa0568810-mRNA-1
chr4_1 CDS 70446541 70446663 70446541 ID=Msa0568810-mRNA-1:cds;Parent=Msa0568810-mRNA-1
chr4_1 CDS 70445789 70445887 70445789 ID=Msa0568810-mRNA-1:cds;Parent=Msa0568810-mRNA-1
chr4_1 CDS 70445651 70445695 70445651 ID=Msa0568810-mRNA-1:cds;Parent=Msa0568810-mRNA-1
chr4_1 CDS 70445473 70445546 70445473 ID=Msa0568810-mRNA-1:cds;Parent=Msa0568810-mRNA-1
chr4_1 CDS 70445245 70445332 70445245 ID=Msa0568810-mRNA-1:cds;Parent=Msa0568810-mRNA-1
chr4_1 three_prime_UTR 70445108 70445244 70445108 ID=Msa0568810-mRNA-1:three_prime_utr;Parent=Msa0568810-mRNA-1
chr4_1 three_prime_UTR 70444903 70445084 70444903 ID=Msa0568810-mRNA-1:three_prime_utr;Parent=Msa0568810-mRNA-1
Gene Sequence

>Msa0568810

ATGAATGATTCTCATGTGAGTCCTCTGGTTTGTAGAACCATGAATATCATGAAACTTCAAAGATTTGGACCACCTAGTAATCTTTCATGGATAAACACTTCAAGATTTGGTGAGAAGCCATTATGGTTTAGACCCATTACTATCATTAAAGTTGCAGAACAATCTTCTGGCTATGGCTTAGTTGAAGATGAAGCACTTGGACAGAAGAAAAGAGAGCTTTACCAGGCTCTGGAAGGAATCAACAGAGGGATATTTGGAATTCCATCTGGCAAGAAGTTAGAAATTGAAAGTTTGGTGAAGCAGCTAGAATCTCAAAATCCAACTCCAGAACCAACTCTAGAACTAGAGAAGGTGGATGGGTGTTGGAGGCTTGTTTATAGCACTATCTCTATTTTGGGATCAAGAAGGACAAAGTTAGGCCTAAGAGACTTTATTGCATTGGGTGATTTCTTTCAGACTATTGATAAAGCCAAGAGCAAAGCGGTGAACGTGATCAAGTTCAATGCAAAAGGGTTGATATTGTTGTGTGGAGAGCTAAGTATTGAGGCCTCATTCAAGATTGCTTCCAAAACAAGGGTTGACATTAATTTTGAAAATTCCACAATCACTCCTGATCAGTTGATGAACGTGTTTCGGAAAAATTATGATATTTTGTTGGGCATCTTCAATCCAGAGGGATGGCTAGAAATCACATATGTTGATGACAACATGAGAATAGGAAGGGATGACAAAGGCAATATCTTTGTGTTGGAAAGATTTGAAGATAATAGCAACTCGTAG

Protein sequence

>Msa0568810

MNDSHVSPLVCRTMNIMKLQRFGPPSNLSWINTSRFGEKPLWFRPITIIKVAEQSSGYGLVEDEALGQKKRELYQALEGINRGIFGIPSGKKLEIESLVKQLESQNPTPEPTLELEKVDGCWRLVYSTISILGSRRTKLGLRDFIALGDFFQTIDKAKSKAVNVIKFNAKGLILLCGELSIEASFKIASKTRVDINFENSTITPDQLMNVFRKNYDILLGIFNPEGWLEITYVDDNMRIGRDDKGNIFVLERFEDNSNS*