Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002720 | sp|Q9SY66|FRS11_ARATH | 39.576 | 283 | 156 | 4 | 31 | 299 | 398 | 679 | 1.36e-63 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002670 | Msa0002720 | 0.844282 | 8.326911e-59 | -8.615850e-47 |
| Msa0002720 | Msa0028700 | 0.824083 | 9.783193e-54 | -8.615850e-47 |
| Msa0002720 | Msa0032330 | 0.809430 | 1.899352e-50 | -8.615850e-47 |
| Msa0002720 | Msa0178960 | 0.805342 | 1.398110e-49 | -8.615850e-47 |
| Msa0002720 | Msa0516750 | 0.801257 | 9.806830e-49 | -8.615850e-47 |
| Msa0002720 | Msa0738500 | 0.822115 | 2.815002e-53 | -8.615850e-47 |
| Msa0002720 | Msa0980090 | 0.821670 | 3.568276e-53 | -8.615850e-47 |
| Msa0002720 | Msa1085740 | 0.805987 | 1.023892e-49 | -8.615850e-47 |
| Msa0002720 | Msa1156020 | 0.807025 | 6.183063e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002720 | MtrunA17_Chr1g0198761 | 65.705 | 312 | 94 | 2 | 31 | 329 | 402 | 713 | 4.51e-140 | 415 |
| Msa0002720 | MtrunA17_Chr2g0276841 | 42.379 | 269 | 136 | 5 | 31 | 283 | 420 | 685 | 1.21e-65 | 219 |
| Msa0002720 | MtrunA17_Chr2g0290391 | 48.165 | 218 | 105 | 2 | 31 | 246 | 409 | 620 | 1.69e-61 | 208 |
| Msa0002720 | MtrunA17_Chr2g0294841 | 42.512 | 207 | 117 | 1 | 31 | 235 | 398 | 604 | 1.33e-54 | 191 |
| Msa0002720 | MtrunA17_Chr5g0431001 | 95.522 | 67 | 3 | 0 | 31 | 97 | 416 | 482 | 3.05e-37 | 140 |
| Msa0002720 | MtrunA17_Chr5g0431001 | 96.667 | 30 | 1 | 0 | 1 | 30 | 309 | 338 | 3.71e-12 | 67.4 |
| Msa0002720 | MtrunA17_Chr1g0202341 | 30.380 | 237 | 149 | 6 | 12 | 238 | 378 | 608 | 6.87e-28 | 114 |
| Msa0002720 | MtrunA17_Chr3g0080351 | 30.698 | 215 | 140 | 5 | 33 | 240 | 412 | 624 | 1.60e-26 | 110 |
| Msa0002720 | MtrunA17_Chr5g0448761 | 29.046 | 241 | 155 | 3 | 17 | 247 | 403 | 637 | 1.95e-25 | 107 |
| Msa0002720 | MtrunA17_Chr1g0207551 | 31.132 | 212 | 141 | 3 | 34 | 240 | 379 | 590 | 3.70e-24 | 103 |
| Msa0002720 | MtrunA17_Chr2g0296781 | 31.004 | 229 | 141 | 5 | 35 | 250 | 340 | 564 | 1.26e-22 | 99.4 |
| Msa0002720 | MtrunA17_Chr2g0329031 | 27.670 | 206 | 143 | 3 | 34 | 234 | 352 | 556 | 1.61e-22 | 99.0 |
| Msa0002720 | MtrunA17_Chr6g0477261 | 30.568 | 229 | 142 | 6 | 35 | 250 | 229 | 453 | 8.78e-22 | 96.7 |
| Msa0002720 | MtrunA17_Chr2g0291581 | 24.643 | 280 | 190 | 3 | 35 | 293 | 404 | 683 | 1.02e-21 | 96.3 |
| Msa0002720 | MtrunA17_Chr1g0196541 | 28.947 | 228 | 150 | 3 | 21 | 236 | 326 | 553 | 2.68e-21 | 95.1 |
| Msa0002720 | MtrunA17_Chr5g0448511 | 25.604 | 207 | 148 | 1 | 34 | 234 | 186 | 392 | 1.94e-20 | 92.4 |
| Msa0002720 | MtrunA17_Chr3g0082121 | 29.185 | 233 | 147 | 6 | 15 | 240 | 370 | 591 | 3.46e-20 | 92.0 |
| Msa0002720 | MtrunA17_Chr5g0440451 | 24.161 | 298 | 197 | 6 | 17 | 297 | 384 | 669 | 4.29e-20 | 91.7 |
| Msa0002720 | MtrunA17_Chr6g0458391 | 25.472 | 212 | 153 | 2 | 34 | 240 | 555 | 766 | 5.12e-19 | 88.6 |
| Msa0002720 | MtrunA17_Chr5g0441581 | 25.943 | 212 | 146 | 2 | 36 | 236 | 369 | 580 | 2.05e-18 | 86.7 |
| Msa0002720 | MtrunA17_Chr1g0203721 | 22.642 | 212 | 159 | 1 | 34 | 240 | 413 | 624 | 2.80e-18 | 86.3 |
| Msa0002720 | MtrunA17_Chr2g0308841 | 25.592 | 211 | 150 | 3 | 33 | 236 | 14 | 224 | 5.54e-18 | 82.8 |
| Msa0002720 | MtrunA17_Chr2g0287061 | 23.874 | 222 | 157 | 3 | 30 | 242 | 488 | 706 | 3.23e-17 | 83.2 |
| Msa0002720 | MtrunA17_Chr2g0324011 | 28.926 | 242 | 159 | 7 | 8 | 238 | 328 | 567 | 8.62e-17 | 81.6 |
| Msa0002720 | MtrunA17_Chr3g0118611 | 26.540 | 211 | 147 | 3 | 30 | 234 | 288 | 496 | 9.99e-17 | 81.6 |
| Msa0002720 | MtrunA17_Chr1g0203051 | 26.866 | 201 | 140 | 4 | 34 | 227 | 422 | 622 | 1.85e-16 | 80.5 |
| Msa0002720 | MtrunA17_Chr8g0363841 | 23.474 | 213 | 155 | 3 | 34 | 238 | 364 | 576 | 8.76e-16 | 78.6 |
| Msa0002720 | MtrunA17_Chr2g0287651 | 25.112 | 223 | 160 | 4 | 23 | 238 | 409 | 631 | 1.41e-11 | 65.9 |
| Msa0002720 | MtrunA17_Chr5g0430921 | 60.784 | 51 | 17 | 1 | 282 | 329 | 1 | 51 | 2.19e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002720 | AT1G10240.2 | 39.576 | 283 | 156 | 4 | 31 | 299 | 398 | 679 | 1.38e-64 | 217 |
| Msa0002720 | AT1G10240.1 | 39.576 | 283 | 156 | 4 | 31 | 299 | 398 | 679 | 1.38e-64 | 217 |
| Msa0002720 | AT5G28530.5 | 38.723 | 235 | 135 | 3 | 34 | 265 | 353 | 581 | 2.28e-50 | 177 |
| Msa0002720 | AT5G28530.3 | 36.398 | 261 | 146 | 4 | 34 | 280 | 416 | 670 | 5.59e-50 | 177 |
| Msa0002720 | AT5G28530.2 | 36.398 | 261 | 146 | 4 | 34 | 280 | 416 | 670 | 5.59e-50 | 177 |
| Msa0002720 | AT5G28530.4 | 38.298 | 235 | 140 | 3 | 34 | 265 | 353 | 585 | 1.57e-49 | 175 |
| Msa0002720 | AT5G28530.1 | 36.015 | 261 | 151 | 4 | 34 | 280 | 416 | 674 | 3.31e-49 | 175 |
| Msa0002720 | AT4G15090.1 | 30.476 | 210 | 141 | 3 | 34 | 238 | 399 | 608 | 5.06e-27 | 112 |
| Msa0002720 | AT4G15090.5 | 30.476 | 210 | 141 | 3 | 34 | 238 | 399 | 608 | 5.06e-27 | 112 |
| Msa0002720 | AT4G15090.3 | 30.476 | 210 | 141 | 3 | 34 | 238 | 399 | 608 | 5.06e-27 | 112 |
| Msa0002720 | AT4G15090.2 | 30.476 | 210 | 141 | 3 | 34 | 238 | 399 | 608 | 5.06e-27 | 112 |
| Msa0002720 | AT4G15090.4 | 30.476 | 210 | 141 | 3 | 34 | 238 | 399 | 608 | 5.06e-27 | 112 |
| Msa0002720 | AT4G38180.1 | 31.064 | 235 | 148 | 3 | 15 | 241 | 410 | 638 | 1.77e-26 | 111 |
| Msa0002720 | AT4G38170.1 | 29.741 | 232 | 151 | 4 | 15 | 240 | 175 | 400 | 8.82e-26 | 108 |
| Msa0002720 | AT3G22170.2 | 27.642 | 246 | 164 | 5 | 34 | 273 | 408 | 645 | 1.70e-25 | 108 |
| Msa0002720 | AT3G22170.1 | 27.642 | 246 | 164 | 5 | 34 | 273 | 408 | 645 | 1.70e-25 | 108 |
| Msa0002720 | AT1G76320.2 | 29.412 | 204 | 141 | 3 | 34 | 234 | 336 | 539 | 5.93e-23 | 100 |
| Msa0002720 | AT1G76320.1 | 29.412 | 204 | 141 | 3 | 34 | 234 | 336 | 539 | 6.28e-23 | 100 |
| Msa0002720 | AT1G76320.4 | 29.412 | 204 | 141 | 3 | 34 | 234 | 336 | 539 | 6.28e-23 | 100 |
| Msa0002720 | AT1G76320.3 | 29.412 | 204 | 141 | 3 | 34 | 234 | 336 | 539 | 6.35e-23 | 100 |
| Msa0002720 | AT4G19990.1 | 26.126 | 222 | 156 | 4 | 25 | 238 | 280 | 501 | 3.85e-20 | 92.0 |
| Msa0002720 | AT4G19990.7 | 26.126 | 222 | 156 | 4 | 25 | 238 | 351 | 572 | 4.78e-20 | 92.0 |
| Msa0002720 | AT4G19990.3 | 26.126 | 222 | 156 | 4 | 25 | 238 | 337 | 558 | 4.92e-20 | 92.0 |
| Msa0002720 | AT4G19990.4 | 26.126 | 222 | 156 | 4 | 25 | 238 | 337 | 558 | 4.92e-20 | 92.0 |
| Msa0002720 | AT4G19990.5 | 26.126 | 222 | 156 | 4 | 25 | 238 | 337 | 558 | 5.44e-20 | 91.7 |
| Msa0002720 | AT4G19990.6 | 26.126 | 222 | 156 | 4 | 25 | 238 | 337 | 558 | 7.28e-20 | 91.3 |
| Msa0002720 | AT4G19990.2 | 26.126 | 222 | 156 | 4 | 25 | 238 | 337 | 558 | 7.28e-20 | 91.3 |
| Msa0002720 | AT2G32250.5 | 24.333 | 300 | 212 | 4 | 3 | 293 | 318 | 611 | 5.45e-19 | 89.0 |
| Msa0002720 | AT2G32250.7 | 24.453 | 274 | 198 | 3 | 29 | 293 | 297 | 570 | 6.33e-19 | 88.6 |
| Msa0002720 | AT2G32250.8 | 24.453 | 274 | 198 | 3 | 29 | 293 | 297 | 570 | 6.38e-19 | 88.6 |
| Msa0002720 | AT1G52520.1 | 25.806 | 217 | 147 | 3 | 35 | 237 | 420 | 636 | 6.41e-19 | 88.6 |
| Msa0002720 | AT2G32250.2 | 24.453 | 274 | 198 | 3 | 29 | 293 | 338 | 611 | 8.15e-19 | 88.2 |
| Msa0002720 | AT2G32250.4 | 24.453 | 274 | 198 | 3 | 29 | 293 | 338 | 611 | 8.15e-19 | 88.2 |
| Msa0002720 | AT5G18960.2 | 25.472 | 212 | 149 | 3 | 35 | 240 | 521 | 729 | 8.38e-19 | 88.2 |
| Msa0002720 | AT5G18960.1 | 25.472 | 212 | 149 | 3 | 35 | 240 | 521 | 729 | 8.38e-19 | 88.2 |
| Msa0002720 | AT2G32250.6 | 24.453 | 274 | 198 | 3 | 29 | 293 | 338 | 611 | 8.39e-19 | 88.2 |
| Msa0002720 | AT2G32250.1 | 24.453 | 274 | 198 | 3 | 29 | 293 | 338 | 611 | 8.39e-19 | 88.2 |
| Msa0002720 | AT2G32250.3 | 24.453 | 274 | 198 | 3 | 29 | 293 | 338 | 611 | 8.39e-19 | 88.2 |
| Msa0002720 | AT2G27110.2 | 25.296 | 253 | 157 | 6 | 30 | 263 | 366 | 605 | 4.17e-18 | 86.3 |
| Msa0002720 | AT2G27110.1 | 25.296 | 253 | 157 | 6 | 30 | 263 | 366 | 605 | 4.17e-18 | 86.3 |
| Msa0002720 | AT2G27110.3 | 25.296 | 253 | 157 | 6 | 30 | 263 | 221 | 460 | 4.56e-18 | 85.9 |
| Msa0002720 | AT3G06250.2 | 23.502 | 217 | 157 | 3 | 30 | 240 | 492 | 705 | 4.33e-17 | 83.2 |
| Msa0002720 | AT3G06250.1 | 23.502 | 217 | 157 | 3 | 30 | 240 | 492 | 705 | 4.33e-17 | 83.2 |
| Msa0002720 | AT3G06250.3 | 23.502 | 217 | 157 | 3 | 30 | 240 | 492 | 705 | 4.33e-17 | 83.2 |
| Msa0002720 | AT1G80010.1 | 27.064 | 218 | 143 | 8 | 34 | 237 | 444 | 659 | 8.13e-14 | 73.2 |
Find 109 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTACATGACTAGATTT+TGG | 0.131548 | 1_1:-4895853 | None:intergenic |
| TCTTTACCCATCGTAAATTT+TGG | 0.158198 | 1_1:+4895223 | Msa0002720:CDS |
| TTCTCACAACCGCGAGTTAT+TGG | 0.184751 | 1_1:+4894612 | Msa0002720:five_prime_UTR |
| ATGAGATGCCTCTTGGAATA+TGG | 0.191775 | 1_1:+4895033 | Msa0002720:exon |
| ATCACATGTTCTTGAGTTTC+AGG | 0.210618 | 1_1:-4896009 | None:intergenic |
| CTCATGTTGAAGCAACTTAA+AGG | 0.248230 | 1_1:-4895575 | None:intergenic |
| TGTTTATTTGCAAAACAAAA+TGG | 0.260407 | 1_1:+4894346 | Msa0002720:five_prime_UTR |
| AAAATCTGTCAAACTTGTTT+TGG | 0.261322 | 1_1:-4895340 | None:intergenic |
| ATTCGTGCATATGAAGCTTT+TGG | 0.265394 | 1_1:+4894969 | Msa0002720:five_prime_UTR |
| CAATATGAATTCACAATTGA+TGG | 0.266214 | 1_1:+4894904 | Msa0002720:five_prime_UTR |
| CGAAATGAGAAGATTTCTTC+AGG | 0.307997 | 1_1:+4895107 | Msa0002720:CDS |
| AATATCATCATAAAGATAAA+AGG | 0.310779 | 1_1:+4895982 | Msa0002720:CDS |
| TCAAGAACATGTGATTGATT+TGG | 0.314506 | 1_1:+4896017 | Msa0002720:CDS |
| CATCAATTGTGAATTCATAT+TGG | 0.326055 | 1_1:-4894903 | None:intergenic |
| ACTTTCGCTATAAGACTTAC+AGG | 0.328084 | 1_1:-4894724 | None:intergenic |
| AACAATTGGAGCATATTGTT+TGG | 0.333028 | 1_1:+4894931 | Msa0002720:five_prime_UTR |
| GCAGCTTCAACCCCTCCTTT+TGG | 0.339248 | 1_1:-4896122 | None:intergenic |
| ATTCAATCATATAGTGGTAT+TGG | 0.341059 | 1_1:+4894814 | Msa0002720:five_prime_UTR |
| GAGCATATTGTTTGGGCATT+TGG | 0.348974 | 1_1:+4894939 | Msa0002720:five_prime_UTR |
| CCTTTACCCTTTACTTTGTT+CGG | 0.349412 | 1_1:+4893792 | Msa0002720:five_prime_UTR |
| ATGACAACGACGAGGCTTCT+TGG | 0.366012 | 1_1:-4896144 | None:intergenic |
| TCAGTCTCTAATTCGATGTT+TGG | 0.372448 | 1_1:+4895903 | Msa0002720:CDS |
| AACGTCACAGTCAGCATTGT+TGG | 0.377007 | 1_1:-4896052 | None:intergenic |
| ACAATTGGAGCATATTGTTT+GGG | 0.379971 | 1_1:+4894932 | Msa0002720:five_prime_UTR |
| ATGGTCTCACAGTTTGGTTT+GGG | 0.387072 | 1_1:+4895177 | Msa0002720:CDS |
| GTAGTTACTAAGAGAAGAAT+TGG | 0.389295 | 1_1:+4894553 | Msa0002720:five_prime_UTR |
| AATGGTCTCACAGTTTGGTT+TGG | 0.398201 | 1_1:+4895176 | Msa0002720:CDS |
| CCTCAAGTCACTAACATTGA+TGG | 0.399508 | 1_1:+4894159 | Msa0002720:five_prime_UTR |
| TTTGCTGGAATGACAACAAC+AGG | 0.405299 | 1_1:+4895273 | Msa0002720:CDS |
| TCAAATATTTGCCCTTCAAA+AGG | 0.411166 | 1_1:-4894189 | None:intergenic |
| ATCCATCGGGTGTTTATAAG+AGG | 0.417116 | 1_1:+4894425 | Msa0002720:five_prime_UTR |
| GATACCACATATAGAATAAA+CGG | 0.421176 | 1_1:+4895008 | Msa0002720:five_prime_UTR |
| AAAGTAATGGTCTCACAGTT+TGG | 0.427267 | 1_1:+4895171 | Msa0002720:CDS |
| TGAGATGCCTCTTGGAATAT+GGG | 0.433904 | 1_1:+4895034 | Msa0002720:exon |
| TTGGGCCTTAGCTTATTTGA+AGG | 0.435274 | 1_1:+4895242 | Msa0002720:CDS |
| TATACGACCACCATCAACTT+TGG | 0.437731 | 1_1:-4895665 | None:intergenic |
| CGAACAAAGTAAAGGGTAAA+GGG | 0.438866 | 1_1:-4893791 | None:intergenic |
| GACGAGGCATGTTCTTCAAT+AGG | 0.443666 | 1_1:-4895535 | None:intergenic |
| TGATTAGTTCCACCACAATC+TGG | 0.446933 | 1_1:-4896170 | None:intergenic |
| AACGGTTATGAGATGCCTCT+TGG | 0.448749 | 1_1:+4895026 | Msa0002720:exon |
| CATGTAATAAACTGCAATGA+TGG | 0.453622 | 1_1:+4895865 | Msa0002720:CDS |
| CAATTGATGGAAGTAACAAT+TGG | 0.453989 | 1_1:+4894917 | Msa0002720:five_prime_UTR |
| TCAGCTTCCTCCATCTTGTT+CGG | 0.457961 | 1_1:+4893758 | Msa0002720:five_prime_UTR |
| GTTTGTCATCGTGGTGGTAT+TGG | 0.458689 | 1_1:+4894454 | Msa0002720:five_prime_UTR |
| ATGCGATCTTGATCAACAAT+TGG | 0.465554 | 1_1:-4894676 | None:intergenic |
| CTCACAGTTTGGTTTGGGTG+TGG | 0.468983 | 1_1:+4895182 | Msa0002720:CDS |
| CCGAACAAAGTAAAGGGTAA+AGG | 0.477098 | 1_1:-4893792 | None:intergenic |
| TATAAGACTTACAGGGCAAC+CGG | 0.483233 | 1_1:-4894716 | None:intergenic |
| AAAACAAAAGGTCGGCCAAA+AGG | 0.495104 | 1_1:+4896092 | Msa0002720:CDS |
| TGAAGCAACTTAAAGGCATA+AGG | 0.499495 | 1_1:-4895568 | None:intergenic |
| CGTTGTCATGTTCCAGATTG+TGG | 0.504732 | 1_1:+4896158 | Msa0002720:CDS |
| ATAACCGTTTATTCTATATG+TGG | 0.505465 | 1_1:-4895012 | None:intergenic |
| AATTGTGAATTCATATTGGA+AGG | 0.507660 | 1_1:-4894899 | None:intergenic |
| CCAAAAGGATCAAGACCAAA+AGG | 0.514192 | 1_1:+4896107 | Msa0002720:CDS |
| CTTTCTCGTCTCCATCGAAA+AGG | 0.515070 | 1_1:-4895820 | None:intergenic |
| GTCAAAATTAGAAATCAAGC+TGG | 0.517568 | 1_1:+4895457 | Msa0002720:CDS |
| ATTGGAATGTTACGATAAGC+AGG | 0.522557 | 1_1:-4894658 | None:intergenic |
| ATGTTATTGACTTGAGGCAA+GGG | 0.525418 | 1_1:-4894261 | None:intergenic |
| TAAGCAATGATGCTAGTGAT+TGG | 0.525487 | 1_1:+4894130 | Msa0002720:five_prime_UTR |
| ACCACGCAAAACTGTTGAAG+TGG | 0.526679 | 1_1:+4894480 | Msa0002720:five_prime_UTR |
| TGGGTTGGTGTTGATAATCA+TGG | 0.529258 | 1_1:+4895053 | Msa0002720:CDS |
| ATACTATTATTGTCTAAAGC+CGG | 0.531055 | 1_1:+4894697 | Msa0002720:five_prime_UTR |
| CAACATCATACCAAAGTTGA+TGG | 0.538288 | 1_1:+4895655 | Msa0002720:CDS |
| TGAACGAGAATGGAAAGTAA+TGG | 0.544871 | 1_1:+4895158 | Msa0002720:CDS |
| TTGCACAACATAAGAGCCAT+TGG | 0.551354 | 1_1:-4895635 | None:intergenic |
| CTCAAGTCACTAACATTGAT+GGG | 0.551567 | 1_1:+4894160 | Msa0002720:five_prime_UTR |
| TAAGAGAAGAATTGGCATTG+AGG | 0.553953 | 1_1:+4894561 | Msa0002720:five_prime_UTR |
| CGAGTTATTGGATGACAAAG+AGG | 0.556388 | 1_1:+4894624 | Msa0002720:five_prime_UTR |
| CAAGTCAATAACATTGATGA+GGG | 0.558520 | 1_1:+4894270 | Msa0002720:five_prime_UTR |
| AAAGTCCTTCAAATAAGCTA+AGG | 0.560983 | 1_1:-4895247 | None:intergenic |
| ACATGTGATTGATTTGGAAG+AGG | 0.565753 | 1_1:+4896023 | Msa0002720:CDS |
| GGAAAATGTGTTGTAATCTG+AGG | 0.568974 | 1_1:-4895514 | None:intergenic |
| ATGTGATTGTAGTGCAAAGA+TGG | 0.570079 | 1_1:+4894531 | Msa0002720:five_prime_UTR |
| ATGTTAGTGACTTGAGGCAA+GGG | 0.572230 | 1_1:-4894153 | None:intergenic |
| GTGTCTGAAGAGAATCCATC+GGG | 0.572540 | 1_1:+4894412 | Msa0002720:five_prime_UTR |
| TCATCAATGTTATTGACTTG+AGG | 0.573525 | 1_1:-4894267 | None:intergenic |
| TAGAAATCAAGCTGGAGAAG+AGG | 0.577533 | 1_1:+4895465 | Msa0002720:CDS |
| AATGTTATTGACTTGAGGCA+AGG | 0.580693 | 1_1:-4894262 | None:intergenic |
| AGTCACTAACATTGATGGGT+GGG | 0.589348 | 1_1:+4894164 | Msa0002720:five_prime_UTR |
| AATGTTAGTGACTTGAGGCA+AGG | 0.597462 | 1_1:-4894154 | None:intergenic |
| AGGGAATTTGTTTGTCATCG+TGG | 0.598966 | 1_1:+4894445 | Msa0002720:five_prime_UTR |
| TGTGTCTGAAGAGAATCCAT+CGG | 0.599444 | 1_1:+4894411 | Msa0002720:five_prime_UTR |
| TCCCTCTTATAAACACCCGA+TGG | 0.599604 | 1_1:-4894427 | None:intergenic |
| GCAGCAATTGAAGCTGCCAA+TGG | 0.600590 | 1_1:+4895619 | Msa0002720:CDS |
| TATCAGATGACCGAACAAGA+TGG | 0.602390 | 1_1:-4893768 | None:intergenic |
| TCAAGTCAATAACATTGATG+AGG | 0.603097 | 1_1:+4894269 | Msa0002720:five_prime_UTR |
| CTGTTGAAGTGGAAAATCAA+AGG | 0.606328 | 1_1:+4894491 | Msa0002720:five_prime_UTR |
| TTAGAGAAAAGAACAGACAC+AGG | 0.606382 | 1_1:+4894754 | Msa0002720:five_prime_UTR |
| CTTTCGCTATAAGACTTACA+GGG | 0.610521 | 1_1:-4894723 | None:intergenic |
| AAGGATCAAGACCAAAAGGA+GGG | 0.611165 | 1_1:+4896111 | Msa0002720:CDS |
| CCATCAATGTTAGTGACTTG+AGG | 0.613145 | 1_1:-4894159 | None:intergenic |
| CTAAGGCCCAAAATTTACGA+TGG | 0.615020 | 1_1:-4895230 | None:intergenic |
| TAAGGCCCAAAATTTACGAT+GGG | 0.615697 | 1_1:-4895229 | None:intergenic |
| ATGCCTCTTGGAATATGGGT+TGG | 0.616141 | 1_1:+4895038 | Msa0002720:CDS |
| GAATTTGTTTGTCATCGTGG+TGG | 0.618777 | 1_1:+4894448 | Msa0002720:five_prime_UTR |
| AAGTCACTAACATTGATGGG+TGG | 0.624878 | 1_1:+4894163 | Msa0002720:five_prime_UTR |
| TCCATCGGGTGTTTATAAGA+GGG | 0.625908 | 1_1:+4894426 | Msa0002720:five_prime_UTR |
| CTTTGTCATCCAATAACTCG+CGG | 0.626544 | 1_1:-4894621 | None:intergenic |
| TGTCATGTTCCAGATTGTGG+TGG | 0.637809 | 1_1:+4896161 | Msa0002720:CDS |
| AAAGGATCAAGACCAAAAGG+AGG | 0.655085 | 1_1:+4896110 | Msa0002720:CDS |
| CAGATGACCGAACAAGATGG+AGG | 0.662759 | 1_1:-4893765 | None:intergenic |
| TAGAGACTGAAATTTAGCAG+AGG | 0.662901 | 1_1:-4895890 | None:intergenic |
| ACACCAACCCATATTCCAAG+AGG | 0.676376 | 1_1:-4895041 | None:intergenic |
| AAGTTTGAAAGATCGAGATG+AGG | 0.682349 | 1_1:+4894876 | Msa0002720:five_prime_UTR |
| CATCATACCAAAGTTGATGG+TGG | 0.683172 | 1_1:+4895658 | Msa0002720:CDS |
| AGGATCAAGACCAAAAGGAG+GGG | 0.696841 | 1_1:+4896112 | Msa0002720:CDS |
| AAGTCAATAACATTGATGAG+GGG | 0.714581 | 1_1:+4894271 | Msa0002720:five_prime_UTR |
| ATAAGGTGTGAGTATAGACG+AGG | 0.720548 | 1_1:-4895551 | None:intergenic |
| TCTGGAACATGACAACGACG+AGG | 0.797744 | 1_1:-4896152 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAAATAAAATAGAATTT+GGG | - | chr1_1:4894034-4894053 | None:intergenic | 10.0% |
| !! | ATCATAAATAAAATAGAATT+TGG | - | chr1_1:4894035-4894054 | None:intergenic | 10.0% |
| !!! | TAATATTAACTGTATTTTTA+TGG | + | chr1_1:4896311-4896330 | Msa0002720:intron | 10.0% |
| !! | TTGAAAAAATAATATTTACC+TGG | - | chr1_1:4893865-4893884 | None:intergenic | 15.0% |
| !! | TTAGTTAAGAATTATATACA+TGG | - | chr1_1:4893979-4893998 | None:intergenic | 15.0% |
| !! | CATAAATAAAATAGAATTTG+GGG | - | chr1_1:4894033-4894052 | None:intergenic | 15.0% |
| !!! | AATTTTATTCAATCATATAG+TGG | + | chr1_1:4894808-4894827 | Msa0002720:five_prime_UTR | 15.0% |
| !! | AATATCATCATAAAGATAAA+AGG | + | chr1_1:4895982-4896001 | Msa0002720:CDS | 15.0% |
| !!! | GTTTGTTTCTTTTCTTTTAA+TGG | + | chr1_1:4893909-4893928 | Msa0002720:intron | 20.0% |
| !! | TGTTTATTTGCAAAACAAAA+TGG | + | chr1_1:4894346-4894365 | Msa0002720:five_prime_UTR | 20.0% |
| !!! | AACAAAATGGATTTTCTATT+AGG | + | chr1_1:4894359-4894378 | Msa0002720:five_prime_UTR | 20.0% |
| !!! | CTAATATCTTTTTCTAAGAA+TGG | - | chr1_1:4894787-4894806 | None:intergenic | 20.0% |
| !!! | CATGGAAATTCATTTTTTTT+TGG | + | chr1_1:4895071-4895090 | Msa0002720:CDS | 20.0% |
| !!! | ATGATTGTTATATTTTGTGT+AGG | + | chr1_1:4895423-4895442 | Msa0002720:intron | 20.0% |
| !!! | TTATTACATGACTAGATTTT+GGG | - | chr1_1:4895855-4895874 | None:intergenic | 20.0% |
| !!! | TTTATTACATGACTAGATTT+TGG | - | chr1_1:4895856-4895875 | None:intergenic | 20.0% |
| !! | CCAATTAAAACTTACTTATT+AGG | - | chr1_1:4896254-4896273 | None:intergenic | 20.0% |
| !!! | CCTAATAAGTAAGTTTTAAT+TGG | + | chr1_1:4896251-4896270 | Msa0002720:intron | 20.0% |
| !!! | TATGTAATCAGTATATTTTG+TGG | + | chr1_1:4896501-4896520 | Msa0002720:intron | 20.0% |
| !!! | TCTGAAGTATTGTTAATTAA+TGG | + | chr1_1:4896628-4896647 | Msa0002720:intron | 20.0% |
| !!! | CTGAAGTATTGTTAATTAAT+GGG | + | chr1_1:4896629-4896648 | Msa0002720:intron | 20.0% |
| !! | TAATTAATGGGACATTAAAT+TGG | + | chr1_1:4896641-4896660 | Msa0002720:intron | 20.0% |
| !!! | TCTTTTACTTCTTTTTTTAG+AGG | - | chr1_1:4896689-4896708 | None:intergenic | 20.0% |
| ! | AACACAAACTTAGCTAATTT+GGG | - | chr1_1:4893951-4893970 | None:intergenic | 25.0% |
| ! | AAACACAAACTTAGCTAATT+TGG | - | chr1_1:4893952-4893971 | None:intergenic | 25.0% |
| !! | ATACTATTATTGTCTAAAGC+CGG | + | chr1_1:4894697-4894716 | Msa0002720:five_prime_UTR | 25.0% |
| ! | ATTCAATCATATAGTGGTAT+TGG | + | chr1_1:4894814-4894833 | Msa0002720:five_prime_UTR | 25.0% |
| ! | AATTGTGAATTCATATTGGA+AGG | - | chr1_1:4894902-4894921 | None:intergenic | 25.0% |
| ! | CATCAATTGTGAATTCATAT+TGG | - | chr1_1:4894906-4894925 | None:intergenic | 25.0% |
| ! | CAATATGAATTCACAATTGA+TGG | + | chr1_1:4894904-4894923 | Msa0002720:five_prime_UTR | 25.0% |
| ! | GATACCACATATAGAATAAA+CGG | + | chr1_1:4895008-4895027 | Msa0002720:five_prime_UTR | 25.0% |
| ! | ATAACCGTTTATTCTATATG+TGG | - | chr1_1:4895015-4895034 | None:intergenic | 25.0% |
| !!! | AAAATCTGTCAAACTTGTTT+TGG | - | chr1_1:4895343-4895362 | None:intergenic | 25.0% |
| !! | TTGTTATATTTTGTGTAGGT+TGG | + | chr1_1:4895427-4895446 | Msa0002720:intron | 25.0% |
| !! | TGTAAAGAGTTTCAATTTTC+AGG | + | chr1_1:4895727-4895746 | Msa0002720:CDS | 25.0% |
| ! | TCCAAACAAAAAGAGAAAAA+TGG | + | chr1_1:4896208-4896227 | Msa0002720:intron | 25.0% |
| !!! | TCCATTTTTCTCTTTTTGTT+TGG | - | chr1_1:4896212-4896231 | None:intergenic | 25.0% |
| ! | TACTTATTAGGAGATTGATA+AGG | - | chr1_1:4896242-4896261 | None:intergenic | 25.0% |
| !!! | TATTTTTATGGTGCTTTGAT+AGG | + | chr1_1:4896323-4896342 | Msa0002720:intron | 25.0% |
| ! | ACAGTTTGATCAAAACTATT+TGG | - | chr1_1:4896405-4896424 | None:intergenic | 25.0% |
| !! | TGTGTAATTAGTGAATTTTG+TGG | + | chr1_1:4896422-4896441 | Msa0002720:intron | 25.0% |
| ! | TGGTAATAATAAACTATAGC+AGG | - | chr1_1:4896570-4896589 | None:intergenic | 25.0% |
| ! | ATACTAGTAATTACACAGTT+TGG | - | chr1_1:4896590-4896609 | None:intergenic | 25.0% |
| !!! | AAAGGAACACATTTTTTCAT+TGG | - | chr1_1:4896713-4896732 | None:intergenic | 25.0% |
| ! | TTTTGACCGAACAAAGTAAA+GGG | - | chr1_1:4893801-4893820 | None:intergenic | 30.0% |
| ! | TTTTTGACCGAACAAAGTAA+AGG | - | chr1_1:4893802-4893821 | None:intergenic | 30.0% |
| AACAAACAATGAGTTCAAGA+TGG | - | chr1_1:4893896-4893915 | None:intergenic | 30.0% | |
| ACACAAACTTAGCTAATTTG+GGG | - | chr1_1:4893950-4893969 | None:intergenic | 30.0% | |
| TCAAATATTTGCCCTTCAAA+AGG | - | chr1_1:4894192-4894211 | None:intergenic | 30.0% | |
| !! | TCATCAATGTTATTGACTTG+AGG | - | chr1_1:4894270-4894289 | None:intergenic | 30.0% |
| TCAAGTCAATAACATTGATG+AGG | + | chr1_1:4894269-4894288 | Msa0002720:five_prime_UTR | 30.0% | |
| CAAGTCAATAACATTGATGA+GGG | + | chr1_1:4894270-4894289 | Msa0002720:five_prime_UTR | 30.0% | |
| AAGTCAATAACATTGATGAG+GGG | + | chr1_1:4894271-4894290 | Msa0002720:five_prime_UTR | 30.0% | |
| GTAGTTACTAAGAGAAGAAT+TGG | + | chr1_1:4894553-4894572 | Msa0002720:five_prime_UTR | 30.0% | |
| ! | AATTGGCATTGAGGAAAAAT+GGG | + | chr1_1:4894570-4894589 | Msa0002720:five_prime_UTR | 30.0% |
| CAATTGATGGAAGTAACAAT+TGG | + | chr1_1:4894917-4894936 | Msa0002720:five_prime_UTR | 30.0% | |
| AACAATTGGAGCATATTGTT+TGG | + | chr1_1:4894931-4894950 | Msa0002720:five_prime_UTR | 30.0% | |
| ACAATTGGAGCATATTGTTT+GGG | + | chr1_1:4894932-4894951 | Msa0002720:five_prime_UTR | 30.0% | |
| ! | TCTTTACCCATCGTAAATTT+TGG | + | chr1_1:4895223-4895242 | Msa0002720:CDS | 30.0% |
| ! | CTTTACCCATCGTAAATTTT+GGG | + | chr1_1:4895224-4895243 | Msa0002720:CDS | 30.0% |
| AAAGTCCTTCAAATAAGCTA+AGG | - | chr1_1:4895250-4895269 | None:intergenic | 30.0% | |
| !!! | TTGAAGGACTTTTTTTTTGC+TGG | + | chr1_1:4895258-4895277 | Msa0002720:CDS | 30.0% |
| GTCAAAATTAGAAATCAAGC+TGG | + | chr1_1:4895457-4895476 | Msa0002720:CDS | 30.0% | |
| !! | CGAAAAGGAAGATATTTTGA+TGG | - | chr1_1:4895808-4895827 | None:intergenic | 30.0% |
| ! | CAAAATATCTTCCTTTTCGA+TGG | + | chr1_1:4895809-4895828 | Msa0002720:CDS | 30.0% |
| CATGTAATAAACTGCAATGA+TGG | + | chr1_1:4895865-4895884 | Msa0002720:CDS | 30.0% | |
| ! | GATATTTTCTAACTCTCTTG+TGG | - | chr1_1:4895968-4895987 | None:intergenic | 30.0% |
| TCAAGAACATGTGATTGATT+TGG | + | chr1_1:4896017-4896036 | Msa0002720:CDS | 30.0% | |
| TCCTGTGTTTCAAAAACAAA+AGG | + | chr1_1:4896080-4896099 | Msa0002720:CDS | 30.0% | |
| !!! | ACCTTTTGTTTTTGAAACAC+AGG | - | chr1_1:4896084-4896103 | None:intergenic | 30.0% |
| GTGTTTCAAAAACAAAAGGT+CGG | + | chr1_1:4896084-4896103 | Msa0002720:CDS | 30.0% | |
| GTCATCTTGAAATAGTGAAT+TGG | + | chr1_1:4896366-4896385 | Msa0002720:intron | 30.0% | |
| AGTGAATTAGACAGATGAAT+TGG | + | chr1_1:4896457-4896476 | Msa0002720:intron | 30.0% | |
| CGAACAAAGTAAAGGGTAAA+GGG | - | chr1_1:4893794-4893813 | None:intergenic | 35.0% | |
| CCTTTACCCTTTACTTTGTT+CGG | + | chr1_1:4893792-4893811 | Msa0002720:five_prime_UTR | 35.0% | |
| TCAGTCAAAAAGCTAATTCC+AGG | + | chr1_1:4893844-4893863 | Msa0002720:five_prime_UTR | 35.0% | |
| CACAAACTTAGCTAATTTGG+GGG | - | chr1_1:4893949-4893968 | None:intergenic | 35.0% | |
| TAAGCAATGATGCTAGTGAT+TGG | + | chr1_1:4894130-4894149 | Msa0002720:five_prime_UTR | 35.0% | |
| CTCAAGTCACTAACATTGAT+GGG | + | chr1_1:4894160-4894179 | Msa0002720:five_prime_UTR | 35.0% | |
| !! | ATGTTATTGACTTGAGGCAA+GGG | - | chr1_1:4894264-4894283 | None:intergenic | 35.0% |
| !! | AATGTTATTGACTTGAGGCA+AGG | - | chr1_1:4894265-4894284 | None:intergenic | 35.0% |
| CTGTTGAAGTGGAAAATCAA+AGG | + | chr1_1:4894491-4894510 | Msa0002720:five_prime_UTR | 35.0% | |
| ATGTGATTGTAGTGCAAAGA+TGG | + | chr1_1:4894531-4894550 | Msa0002720:five_prime_UTR | 35.0% | |
| TAAGAGAAGAATTGGCATTG+AGG | + | chr1_1:4894561-4894580 | Msa0002720:five_prime_UTR | 35.0% | |
| ! | GAATTGGCATTGAGGAAAAA+TGG | + | chr1_1:4894569-4894588 | Msa0002720:five_prime_UTR | 35.0% |
| ATTGGAATGTTACGATAAGC+AGG | - | chr1_1:4894661-4894680 | None:intergenic | 35.0% | |
| ATGCGATCTTGATCAACAAT+TGG | - | chr1_1:4894679-4894698 | None:intergenic | 35.0% | |
| CTTTCGCTATAAGACTTACA+GGG | - | chr1_1:4894726-4894745 | None:intergenic | 35.0% | |
| ACTTTCGCTATAAGACTTAC+AGG | - | chr1_1:4894727-4894746 | None:intergenic | 35.0% | |
| TTAGAGAAAAGAACAGACAC+AGG | + | chr1_1:4894754-4894773 | Msa0002720:five_prime_UTR | 35.0% | |
| AAGTTTGAAAGATCGAGATG+AGG | + | chr1_1:4894876-4894895 | Msa0002720:five_prime_UTR | 35.0% | |
| ! | ATTCGTGCATATGAAGCTTT+TGG | + | chr1_1:4894969-4894988 | Msa0002720:five_prime_UTR | 35.0% |
| CGAAATGAGAAGATTTCTTC+AGG | + | chr1_1:4895107-4895126 | Msa0002720:CDS | 35.0% | |
| ! | CAGATGATTTTGAACGAGAA+TGG | + | chr1_1:4895148-4895167 | Msa0002720:CDS | 35.0% |
| TGAACGAGAATGGAAAGTAA+TGG | + | chr1_1:4895158-4895177 | Msa0002720:CDS | 35.0% | |
| AAAGTAATGGTCTCACAGTT+TGG | + | chr1_1:4895171-4895190 | Msa0002720:CDS | 35.0% | |
| TAAGGCCCAAAATTTACGAT+GGG | - | chr1_1:4895232-4895251 | None:intergenic | 35.0% | |
| GGAAAATGTGTTGTAATCTG+AGG | - | chr1_1:4895517-4895536 | None:intergenic | 35.0% | |
| ! | TGAAGCAACTTAAAGGCATA+AGG | - | chr1_1:4895571-4895590 | None:intergenic | 35.0% |
| CTCATGTTGAAGCAACTTAA+AGG | - | chr1_1:4895578-4895597 | None:intergenic | 35.0% | |
| CAACATCATACCAAAGTTGA+TGG | + | chr1_1:4895655-4895674 | Msa0002720:CDS | 35.0% | |
| TAGAGACTGAAATTTAGCAG+AGG | - | chr1_1:4895893-4895912 | None:intergenic | 35.0% | |
| TCAGTCTCTAATTCGATGTT+TGG | + | chr1_1:4895903-4895922 | Msa0002720:CDS | 35.0% | |
| ATCACATGTTCTTGAGTTTC+AGG | - | chr1_1:4896012-4896031 | None:intergenic | 35.0% | |
| !! | ACATGTGATTGATTTGGAAG+AGG | + | chr1_1:4896023-4896042 | Msa0002720:CDS | 35.0% |
| TGCTTTGATAGGATCATGAA+GGG | + | chr1_1:4896334-4896353 | Msa0002720:intron | 35.0% | |
| TAGTTTGATCAAAGCAGCTT+CGG | - | chr1_1:4896483-4896502 | None:intergenic | 35.0% | |
| TATCAGATGACCGAACAAGA+TGG | - | chr1_1:4893771-4893790 | None:intergenic | 40.0% | |
| CCGAACAAAGTAAAGGGTAA+AGG | - | chr1_1:4893795-4893814 | None:intergenic | 40.0% | |
| !! | GCTTTTTGACTGAAGCAAGA+TGG | - | chr1_1:4893837-4893856 | None:intergenic | 40.0% |
| ATGTTAGTGACTTGAGGCAA+GGG | - | chr1_1:4894156-4894175 | None:intergenic | 40.0% | |
| AATGTTAGTGACTTGAGGCA+AGG | - | chr1_1:4894157-4894176 | None:intergenic | 40.0% | |
| CCATCAATGTTAGTGACTTG+AGG | - | chr1_1:4894162-4894181 | None:intergenic | 40.0% | |
| CCTCAAGTCACTAACATTGA+TGG | + | chr1_1:4894159-4894178 | Msa0002720:five_prime_UTR | 40.0% | |
| AAGTCACTAACATTGATGGG+TGG | + | chr1_1:4894163-4894182 | Msa0002720:five_prime_UTR | 40.0% | |
| ! | AGTCACTAACATTGATGGGT+GGG | + | chr1_1:4894164-4894183 | Msa0002720:five_prime_UTR | 40.0% |
| ! | TGATGAGGGGATTCTTTTGA+AGG | + | chr1_1:4894284-4894303 | Msa0002720:five_prime_UTR | 40.0% |
| ! | GATGAGGGGATTCTTTTGAA+GGG | + | chr1_1:4894285-4894304 | Msa0002720:five_prime_UTR | 40.0% |
| TGTGTCTGAAGAGAATCCAT+CGG | + | chr1_1:4894411-4894430 | Msa0002720:five_prime_UTR | 40.0% | |
| ATCCATCGGGTGTTTATAAG+AGG | + | chr1_1:4894425-4894444 | Msa0002720:five_prime_UTR | 40.0% | |
| TCCATCGGGTGTTTATAAGA+GGG | + | chr1_1:4894426-4894445 | Msa0002720:five_prime_UTR | 40.0% | |
| ! | AGGGAATTTGTTTGTCATCG+TGG | + | chr1_1:4894445-4894464 | Msa0002720:five_prime_UTR | 40.0% |
| ! | GAATTTGTTTGTCATCGTGG+TGG | + | chr1_1:4894448-4894467 | Msa0002720:five_prime_UTR | 40.0% |
| CTTTGTCATCCAATAACTCG+CGG | - | chr1_1:4894624-4894643 | None:intergenic | 40.0% | |
| CGAGTTATTGGATGACAAAG+AGG | + | chr1_1:4894624-4894643 | Msa0002720:five_prime_UTR | 40.0% | |
| TATAAGACTTACAGGGCAAC+CGG | - | chr1_1:4894719-4894738 | None:intergenic | 40.0% | |
| GAGCATATTGTTTGGGCATT+TGG | + | chr1_1:4894939-4894958 | Msa0002720:five_prime_UTR | 40.0% | |
| ATGAGATGCCTCTTGGAATA+TGG | + | chr1_1:4895033-4895052 | Msa0002720:exon | 40.0% | |
| TGAGATGCCTCTTGGAATAT+GGG | + | chr1_1:4895034-4895053 | Msa0002720:exon | 40.0% | |
| !! | TGGGTTGGTGTTGATAATCA+TGG | + | chr1_1:4895053-4895072 | Msa0002720:CDS | 40.0% |
| AATGGTCTCACAGTTTGGTT+TGG | + | chr1_1:4895176-4895195 | Msa0002720:CDS | 40.0% | |
| ! | ATGGTCTCACAGTTTGGTTT+GGG | + | chr1_1:4895177-4895196 | Msa0002720:CDS | 40.0% |
| CTAAGGCCCAAAATTTACGA+TGG | - | chr1_1:4895233-4895252 | None:intergenic | 40.0% | |
| TTGGGCCTTAGCTTATTTGA+AGG | + | chr1_1:4895242-4895261 | Msa0002720:CDS | 40.0% | |
| TTTGCTGGAATGACAACAAC+AGG | + | chr1_1:4895273-4895292 | Msa0002720:CDS | 40.0% | |
| TAGAAATCAAGCTGGAGAAG+AGG | + | chr1_1:4895465-4895484 | Msa0002720:CDS | 40.0% | |
| ATAAGGTGTGAGTATAGACG+AGG | - | chr1_1:4895554-4895573 | None:intergenic | 40.0% | |
| TTGCACAACATAAGAGCCAT+TGG | - | chr1_1:4895638-4895657 | None:intergenic | 40.0% | |
| !! | CATCATACCAAAGTTGATGG+TGG | + | chr1_1:4895658-4895677 | Msa0002720:CDS | 40.0% |
| TATACGACCACCATCAACTT+TGG | - | chr1_1:4895668-4895687 | None:intergenic | 40.0% | |
| AAAGACAAGTGAACGAGAAC+AGG | + | chr1_1:4895939-4895958 | Msa0002720:intron | 40.0% | |
| AAAACAAAAGGTCGGCCAAA+AGG | + | chr1_1:4896092-4896111 | Msa0002720:CDS | 40.0% | |
| !!! | CCTTTTGGTCTTGATCCTTT+TGG | - | chr1_1:4896110-4896129 | None:intergenic | 40.0% |
| CCAAAAGGATCAAGACCAAA+AGG | + | chr1_1:4896107-4896126 | Msa0002720:CDS | 40.0% | |
| AAAGGATCAAGACCAAAAGG+AGG | + | chr1_1:4896110-4896129 | Msa0002720:CDS | 40.0% | |
| AAGGATCAAGACCAAAAGGA+GGG | + | chr1_1:4896111-4896130 | Msa0002720:CDS | 40.0% | |
| ! | TGATTAGTTCCACCACAATC+TGG | - | chr1_1:4896173-4896192 | None:intergenic | 40.0% |
| GTGCTTTGATAGGATCATGA+AGG | + | chr1_1:4896333-4896352 | Msa0002720:intron | 40.0% | |
| TTGATAGGATCATGAAGGGT+TGG | + | chr1_1:4896338-4896357 | Msa0002720:intron | 40.0% | |
| TCAGCTTCCTCCATCTTGTT+CGG | + | chr1_1:4893758-4893777 | Msa0002720:five_prime_UTR | 45.0% | |
| !! | ATGGGTGGGTTCCTTTTGAA+GGG | + | chr1_1:4894178-4894197 | Msa0002720:five_prime_UTR | 45.0% |
| GTGTCTGAAGAGAATCCATC+GGG | + | chr1_1:4894412-4894431 | Msa0002720:five_prime_UTR | 45.0% | |
| TCCCTCTTATAAACACCCGA+TGG | - | chr1_1:4894430-4894449 | None:intergenic | 45.0% | |
| GTTTGTCATCGTGGTGGTAT+TGG | + | chr1_1:4894454-4894473 | Msa0002720:five_prime_UTR | 45.0% | |
| ACCACGCAAAACTGTTGAAG+TGG | + | chr1_1:4894480-4894499 | Msa0002720:five_prime_UTR | 45.0% | |
| ! | TCCACTTCAACAGTTTTGCG+TGG | - | chr1_1:4894484-4894503 | None:intergenic | 45.0% |
| ! | TGGCATTGAGGAAAAATGGG+TGG | + | chr1_1:4894573-4894592 | Msa0002720:five_prime_UTR | 45.0% |
| TTCTCACAACCGCGAGTTAT+TGG | + | chr1_1:4894612-4894631 | Msa0002720:five_prime_UTR | 45.0% | |
| AACGGTTATGAGATGCCTCT+TGG | + | chr1_1:4895026-4895045 | Msa0002720:exon | 45.0% | |
| ATGCCTCTTGGAATATGGGT+TGG | + | chr1_1:4895038-4895057 | Msa0002720:CDS | 45.0% | |
| ACACCAACCCATATTCCAAG+AGG | - | chr1_1:4895044-4895063 | None:intergenic | 45.0% | |
| GACGAGGCATGTTCTTCAAT+AGG | - | chr1_1:4895538-4895557 | None:intergenic | 45.0% | |
| CTTTCTCGTCTCCATCGAAA+AGG | - | chr1_1:4895823-4895842 | None:intergenic | 45.0% | |
| AACGTCACAGTCAGCATTGT+TGG | - | chr1_1:4896055-4896074 | None:intergenic | 45.0% | |
| AGGATCAAGACCAAAAGGAG+GGG | + | chr1_1:4896112-4896131 | Msa0002720:CDS | 45.0% | |
| CGTTGTCATGTTCCAGATTG+TGG | + | chr1_1:4896158-4896177 | Msa0002720:CDS | 45.0% | |
| TGTCATGTTCCAGATTGTGG+TGG | + | chr1_1:4896161-4896180 | Msa0002720:CDS | 45.0% | |
| !!! | ATTTTTATTTTTAAGAAAAT+AGG | + | chr1_1:4894066-4894085 | Msa0002720:intron | 5.0% |
| CAGATGACCGAACAAGATGG+AGG | - | chr1_1:4893768-4893787 | None:intergenic | 50.0% | |
| !! | GATGGGTGGGTTCCTTTTGA+AGG | + | chr1_1:4894177-4894196 | Msa0002720:five_prime_UTR | 50.0% |
| !! | CTCACAGTTTGGTTTGGGTG+TGG | + | chr1_1:4895182-4895201 | Msa0002720:CDS | 50.0% |
| GCAGCAATTGAAGCTGCCAA+TGG | + | chr1_1:4895619-4895638 | Msa0002720:CDS | 50.0% | |
| ATGACAACGACGAGGCTTCT+TGG | - | chr1_1:4896147-4896166 | None:intergenic | 50.0% | |
| ! | TCTGGAACATGACAACGACG+AGG | - | chr1_1:4896155-4896174 | None:intergenic | 50.0% |
| ! | GCAGCTTCAACCCCTCCTTT+TGG | - | chr1_1:4896125-4896144 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 4893742 | 4896749 | 4893742 | ID=Msa0002720;Name=Msa0002720 |
| chr1_1 | mRNA | 4893742 | 4896749 | 4893742 | ID=Msa0002720-mRNA-1;Parent=Msa0002720;Name=Msa0002720-mRNA-1;_AED=0.09;_eAED=0.09;_QI=1074|0.33|0.14|0.85|0.16|0|7|0|350 |
| chr1_1 | exon | 4893742 | 4893865 | 4893742 | ID=Msa0002720-mRNA-1:exon:1491;Parent=Msa0002720-mRNA-1 |
| chr1_1 | exon | 4894088 | 4895128 | 4894088 | ID=Msa0002720-mRNA-1:exon:1492;Parent=Msa0002720-mRNA-1 |
| chr1_1 | exon | 4895142 | 4895371 | 4895142 | ID=Msa0002720-mRNA-1:exon:1493;Parent=Msa0002720-mRNA-1 |
| chr1_1 | exon | 4895445 | 4895682 | 4895445 | ID=Msa0002720-mRNA-1:exon:1494;Parent=Msa0002720-mRNA-1 |
| chr1_1 | exon | 4895689 | 4895927 | 4895689 | ID=Msa0002720-mRNA-1:exon:1495;Parent=Msa0002720-mRNA-1 |
| chr1_1 | exon | 4895961 | 4896206 | 4895961 | ID=Msa0002720-mRNA-1:exon:1496;Parent=Msa0002720-mRNA-1 |
| chr1_1 | exon | 4896744 | 4896749 | 4896744 | ID=Msa0002720-mRNA-1:exon:1497;Parent=Msa0002720-mRNA-1 |
| chr1_1 | five_prime_UTR | 4893742 | 4893865 | 4893742 | ID=Msa0002720-mRNA-1:five_prime_utr;Parent=Msa0002720-mRNA-1 |
| chr1_1 | five_prime_UTR | 4894088 | 4895037 | 4894088 | ID=Msa0002720-mRNA-1:five_prime_utr;Parent=Msa0002720-mRNA-1 |
| chr1_1 | CDS | 4895038 | 4895128 | 4895038 | ID=Msa0002720-mRNA-1:cds;Parent=Msa0002720-mRNA-1 |
| chr1_1 | CDS | 4895142 | 4895371 | 4895142 | ID=Msa0002720-mRNA-1:cds;Parent=Msa0002720-mRNA-1 |
| chr1_1 | CDS | 4895445 | 4895682 | 4895445 | ID=Msa0002720-mRNA-1:cds;Parent=Msa0002720-mRNA-1 |
| chr1_1 | CDS | 4895689 | 4895927 | 4895689 | ID=Msa0002720-mRNA-1:cds;Parent=Msa0002720-mRNA-1 |
| chr1_1 | CDS | 4895961 | 4896206 | 4895961 | ID=Msa0002720-mRNA-1:cds;Parent=Msa0002720-mRNA-1 |
| chr1_1 | CDS | 4896744 | 4896749 | 4896744 | ID=Msa0002720-mRNA-1:cds;Parent=Msa0002720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
