Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738500 | XP_024641248.2 | 74.966 | 735 | 183 | 1 | 31 | 764 | 16 | 750 | 0.0 | 1164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738500 | sp|Q9SY66|FRS11_ARATH | 45.710 | 676 | 352 | 8 | 30 | 697 | 11 | 679 | 0.0 | 614 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738500 | A0A396JX52 | 74.966 | 735 | 183 | 1 | 31 | 764 | 16 | 750 | 0.0 | 1164 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0738500 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002670 | Msa0738500 | 0.833561 | 4.967814e-56 | -8.615850e-47 |
| Msa0002720 | Msa0738500 | 0.822115 | 2.815002e-53 | -8.615850e-47 |
| Msa0028700 | Msa0738500 | 0.891593 | 3.447457e-74 | -8.615850e-47 |
| Msa0032330 | Msa0738500 | 0.969646 | 1.978383e-130 | -8.615850e-47 |
| Msa0062860 | Msa0738500 | 0.816234 | 6.142675e-52 | -8.615850e-47 |
| Msa0105070 | Msa0738500 | 0.808600 | 2.859767e-50 | -8.615850e-47 |
| Msa0610800 | Msa0738500 | 0.802245 | 6.146878e-49 | -8.615850e-47 |
| Msa0615740 | Msa0738500 | 0.846108 | 2.671544e-59 | -8.615850e-47 |
| Msa0701010 | Msa0738500 | 0.837845 | 4.086764e-57 | -8.615850e-47 |
| Msa0731940 | Msa0738500 | 0.800711 | 1.268053e-48 | -8.615850e-47 |
| Msa0738500 | Msa0768290 | 0.821736 | 3.446168e-53 | -8.615850e-47 |
| Msa0738500 | Msa0768370 | 0.836463 | 9.222904e-57 | -8.615850e-47 |
| Msa0738500 | Msa0824590 | 0.804836 | 1.784516e-49 | -8.615850e-47 |
| Msa0738500 | Msa0828940 | 0.815647 | 8.303271e-52 | -8.615850e-47 |
| Msa0738500 | Msa0842650 | 0.814363 | 1.600941e-51 | -8.615850e-47 |
| Msa0738500 | Msa0844490 | 0.805186 | 1.507346e-49 | -8.615850e-47 |
| Msa0738500 | Msa0849030 | 0.825155 | 5.469942e-54 | -8.615850e-47 |
| Msa0738500 | Msa0864070 | 0.805593 | 1.238551e-49 | -8.615850e-47 |
| Msa0738500 | Msa0877250 | 0.859953 | 2.895494e-63 | -8.615850e-47 |
| Msa0738500 | Msa0888130 | 0.801261 | 9.787069e-49 | -8.615850e-47 |
| Msa0738500 | Msa0899430 | 0.822023 | 2.956946e-53 | -8.615850e-47 |
| Msa0738500 | Msa0899450 | 0.812446 | 4.221581e-51 | -8.615850e-47 |
| Msa0738500 | Msa0917880 | 0.830463 | 2.895829e-55 | -8.615850e-47 |
| Msa0738500 | Msa0927380 | 0.813911 | 2.014312e-51 | -8.615850e-47 |
| Msa0738500 | Msa0936300 | 0.801413 | 9.112518e-49 | -8.615850e-47 |
| Msa0738500 | Msa0953120 | 0.817192 | 3.745599e-52 | -8.615850e-47 |
| Msa0738500 | Msa0958550 | 0.838074 | 3.568769e-57 | -8.615850e-47 |
| Msa0738500 | Msa0964900 | 0.806794 | 6.918118e-50 | -8.615850e-47 |
| Msa0738500 | Msa0966750 | 0.815375 | 9.548262e-52 | -8.615850e-47 |
| Msa0738500 | Msa0980090 | 0.874515 | 6.358132e-68 | -8.615850e-47 |
| Msa0738500 | Msa1000890 | 0.801394 | 9.193562e-49 | -8.615850e-47 |
| Msa0738500 | Msa1000900 | 0.812494 | 4.120965e-51 | -8.615850e-47 |
| Msa0738500 | Msa1014540 | 0.806632 | 7.485736e-50 | -8.615850e-47 |
| Msa0738500 | Msa1015490 | 0.804380 | 2.221352e-49 | -8.615850e-47 |
| Msa0738500 | Msa1082580 | 0.817585 | 3.055950e-52 | -8.615850e-47 |
| Msa0738500 | Msa1085740 | 0.837849 | 4.077105e-57 | -8.615850e-47 |
| Msa0738500 | Msa1139680 | 0.806509 | 7.946451e-50 | -8.615850e-47 |
| Msa0738500 | Msa1156020 | 0.893035 | 9.140494e-75 | -8.615850e-47 |
| Msa0738500 | Msa1238930 | 0.807348 | 5.282026e-50 | -8.615850e-47 |
| Msa0738500 | Msa1239530 | 0.810922 | 9.060214e-51 | -8.615850e-47 |
| Msa0738500 | Msa1244250 | 0.819115 | 1.375747e-52 | -8.615850e-47 |
| Msa0738500 | Msa1249490 | 0.819579 | 1.078755e-52 | -8.615850e-47 |
| Msa0738500 | Msa1277660 | 0.802775 | 4.779616e-49 | -8.615850e-47 |
| Msa0738500 | Msa1284680 | 0.806645 | 7.439195e-50 | -8.615850e-47 |
| Msa0738500 | Msa1306760 | 0.803028 | 4.237986e-49 | -8.615850e-47 |
| Msa0738500 | Msa1362880 | 0.815991 | 6.962201e-52 | -8.615850e-47 |
| Msa0738500 | Msa1366810 | 0.813024 | 3.155243e-51 | -8.615850e-47 |
| Msa0738500 | Msa1402790 | 0.801054 | 1.079109e-48 | -8.615850e-47 |
| Msa0738500 | Msa1451620 | -0.801078 | 1.066696e-48 | -8.615850e-47 |
| Msa0165220 | Msa0738500 | 0.801183 | 1.015282e-48 | -8.615850e-47 |
| Msa0178960 | Msa0738500 | 0.858545 | 7.656213e-63 | -8.615850e-47 |
| Msa0178970 | Msa0738500 | 0.838073 | 3.570312e-57 | -8.615850e-47 |
| Msa0180500 | Msa0738500 | 0.818450 | 1.947960e-52 | -8.615850e-47 |
| Msa0416650 | Msa0738500 | 0.804874 | 1.752183e-49 | -8.615850e-47 |
| Msa0424320 | Msa0738500 | 0.837993 | 3.743775e-57 | -8.615850e-47 |
| Msa0251640 | Msa0738500 | 0.800741 | 1.250310e-48 | -8.615850e-47 |
| Msa0278110 | Msa0738500 | 0.823017 | 1.736457e-53 | -8.615850e-47 |
| Msa0278190 | Msa0738500 | 0.802355 | 5.834474e-49 | -8.615850e-47 |
| Msa0317290 | Msa0738500 | 0.954496 | 2.596644e-112 | -8.615850e-47 |
| Msa0340450 | Msa0738500 | 0.804022 | 2.637090e-49 | -8.615850e-47 |
| Msa0350990 | Msa0738500 | 0.814990 | 1.162584e-51 | -8.615850e-47 |
| Msa0351030 | Msa0738500 | 0.817509 | 3.177662e-52 | -8.615850e-47 |
| Msa0351100 | Msa0738500 | 0.802199 | 6.284426e-49 | -8.615850e-47 |
| Msa0516750 | Msa0738500 | 0.971443 | 3.593558e-133 | -8.615850e-47 |
| Msa0523940 | Msa0738500 | 0.844652 | 6.622090e-59 | -8.615850e-47 |
| Msa0562440 | Msa0738500 | 0.802498 | 5.453145e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738500 | MtrunA17_Chr1g0198761 | 74.966 | 735 | 183 | 1 | 31 | 764 | 16 | 750 | 0.0 | 1164 |
| Msa0738500 | MtrunA17_Chr5g0431001 | 91.701 | 482 | 40 | 0 | 1 | 482 | 1 | 482 | 0.0 | 926 |
| Msa0738500 | MtrunA17_Chr2g0276841 | 47.520 | 625 | 317 | 5 | 60 | 681 | 69 | 685 | 0.0 | 620 |
| Msa0738500 | MtrunA17_Chr2g0294841 | 42.496 | 713 | 374 | 8 | 60 | 747 | 44 | 745 | 0.0 | 593 |
| Msa0738500 | MtrunA17_Chr2g0290391 | 45.412 | 643 | 314 | 7 | 61 | 683 | 51 | 676 | 0.0 | 565 |
| Msa0738500 | MtrunA17_Chr1g0202341 | 29.412 | 697 | 445 | 17 | 13 | 692 | 10 | 676 | 6.44e-85 | 283 |
| Msa0738500 | MtrunA17_Chr5g0448761 | 30.217 | 599 | 391 | 10 | 50 | 634 | 52 | 637 | 1.22e-80 | 274 |
| Msa0738500 | MtrunA17_Chr2g0296781 | 29.197 | 685 | 428 | 19 | 67 | 724 | 3 | 657 | 4.59e-77 | 263 |
| Msa0738500 | MtrunA17_Chr3g0080351 | 30.703 | 583 | 354 | 19 | 61 | 627 | 76 | 624 | 5.38e-74 | 257 |
| Msa0738500 | MtrunA17_Chr6g0477261 | 31.703 | 552 | 335 | 14 | 194 | 718 | 4 | 540 | 3.11e-71 | 246 |
| Msa0738500 | MtrunA17_Chr2g0329031 | 27.207 | 691 | 435 | 17 | 67 | 734 | 20 | 665 | 1.34e-70 | 246 |
| Msa0738500 | MtrunA17_Chr6g0458391 | 28.250 | 577 | 375 | 11 | 58 | 627 | 222 | 766 | 9.98e-68 | 238 |
| Msa0738500 | MtrunA17_Chr8g0363841 | 28.497 | 579 | 379 | 14 | 62 | 625 | 18 | 576 | 8.64e-67 | 234 |
| Msa0738500 | MtrunA17_Chr5g0441581 | 29.899 | 495 | 319 | 10 | 141 | 623 | 102 | 580 | 5.03e-66 | 232 |
| Msa0738500 | MtrunA17_Chr1g0203051 | 27.152 | 604 | 388 | 15 | 28 | 613 | 52 | 621 | 6.52e-66 | 231 |
| Msa0738500 | MtrunA17_Chr2g0287651 | 26.694 | 723 | 476 | 20 | 45 | 749 | 60 | 746 | 4.22e-65 | 233 |
| Msa0738500 | MtrunA17_Chr1g0207551 | 29.534 | 579 | 374 | 14 | 61 | 627 | 34 | 590 | 9.29e-65 | 231 |
| Msa0738500 | MtrunA17_Chr3g0082121 | 29.776 | 581 | 364 | 17 | 60 | 627 | 42 | 591 | 3.73e-63 | 224 |
| Msa0738500 | MtrunA17_Chr5g0440451 | 24.811 | 661 | 437 | 13 | 61 | 695 | 43 | 669 | 7.84e-61 | 221 |
| Msa0738500 | MtrunA17_Chr2g0287061 | 27.167 | 600 | 359 | 15 | 40 | 625 | 165 | 700 | 8.46e-60 | 216 |
| Msa0738500 | MtrunA17_Chr1g0203721 | 24.714 | 700 | 477 | 13 | 64 | 734 | 66 | 744 | 1.50e-59 | 217 |
| Msa0738500 | MtrunA17_Chr2g0324011 | 27.087 | 587 | 377 | 13 | 61 | 625 | 10 | 567 | 6.38e-57 | 204 |
| Msa0738500 | MtrunA17_Chr1g0196541 | 26.897 | 580 | 372 | 14 | 67 | 623 | 3 | 553 | 2.90e-56 | 205 |
| Msa0738500 | MtrunA17_Chr5g0448511 | 30.952 | 378 | 255 | 3 | 249 | 621 | 16 | 392 | 7.67e-56 | 201 |
| Msa0738500 | MtrunA17_Chr2g0291581 | 25.619 | 687 | 430 | 17 | 38 | 685 | 43 | 687 | 2.10e-52 | 194 |
| Msa0738500 | MtrunA17_Chr3g0118611 | 28.538 | 424 | 292 | 6 | 203 | 621 | 79 | 496 | 2.19e-51 | 192 |
| Msa0738500 | MtrunA17_Chr5g0430921 | 96.471 | 85 | 3 | 0 | 680 | 764 | 1 | 85 | 3.47e-51 | 172 |
| Msa0738500 | MtrunA17_Chr3g0081281 | 83.696 | 92 | 15 | 0 | 210 | 301 | 2 | 93 | 1.87e-46 | 160 |
| Msa0738500 | MtrunA17_Chr2g0291591 | 24.296 | 568 | 373 | 14 | 20 | 565 | 25 | 557 | 1.04e-37 | 149 |
| Msa0738500 | MtrunA17_Chr1g0164591 | 34.314 | 204 | 132 | 2 | 262 | 464 | 106 | 308 | 2.32e-35 | 137 |
| Msa0738500 | MtrunA17_Chr7g0258861 | 25.676 | 296 | 194 | 6 | 61 | 347 | 10 | 288 | 2.01e-22 | 99.0 |
| Msa0738500 | MtrunA17_Chr2g0308841 | 26.066 | 211 | 151 | 3 | 418 | 623 | 14 | 224 | 3.96e-17 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738500 | AT1G10240.2 | 45.710 | 676 | 352 | 8 | 30 | 697 | 11 | 679 | 0.0 | 614 |
| Msa0738500 | AT1G10240.1 | 45.710 | 676 | 352 | 8 | 30 | 697 | 11 | 679 | 0.0 | 614 |
| Msa0738500 | AT5G28530.3 | 41.882 | 659 | 357 | 5 | 31 | 678 | 27 | 670 | 0.0 | 549 |
| Msa0738500 | AT5G28530.2 | 41.882 | 659 | 357 | 5 | 31 | 678 | 27 | 670 | 0.0 | 549 |
| Msa0738500 | AT5G28530.1 | 41.730 | 659 | 362 | 5 | 31 | 678 | 27 | 674 | 0.0 | 548 |
| Msa0738500 | AT5G28530.5 | 38.213 | 649 | 332 | 8 | 31 | 678 | 27 | 607 | 9.35e-152 | 456 |
| Msa0738500 | AT5G28530.4 | 38.059 | 649 | 337 | 8 | 31 | 678 | 27 | 611 | 4.73e-151 | 455 |
| Msa0738500 | AT4G38180.1 | 31.196 | 577 | 377 | 8 | 61 | 628 | 73 | 638 | 1.70e-82 | 280 |
| Msa0738500 | AT4G15090.1 | 28.302 | 689 | 448 | 18 | 61 | 727 | 51 | 715 | 4.91e-80 | 274 |
| Msa0738500 | AT4G15090.5 | 28.302 | 689 | 448 | 18 | 61 | 727 | 51 | 715 | 4.91e-80 | 274 |
| Msa0738500 | AT4G15090.3 | 28.302 | 689 | 448 | 18 | 61 | 727 | 51 | 715 | 4.91e-80 | 274 |
| Msa0738500 | AT4G15090.2 | 28.302 | 689 | 448 | 18 | 61 | 727 | 51 | 715 | 4.91e-80 | 274 |
| Msa0738500 | AT4G15090.4 | 28.302 | 689 | 448 | 18 | 61 | 727 | 51 | 715 | 4.91e-80 | 274 |
| Msa0738500 | AT1G76320.3 | 27.915 | 566 | 368 | 13 | 67 | 621 | 3 | 539 | 3.51e-64 | 227 |
| Msa0738500 | AT1G76320.2 | 27.915 | 566 | 368 | 13 | 67 | 621 | 3 | 539 | 4.93e-64 | 228 |
| Msa0738500 | AT1G76320.1 | 27.915 | 566 | 368 | 13 | 67 | 621 | 3 | 539 | 6.14e-64 | 227 |
| Msa0738500 | AT1G76320.4 | 27.915 | 566 | 368 | 13 | 67 | 621 | 3 | 539 | 6.14e-64 | 227 |
| Msa0738500 | AT3G22170.2 | 26.606 | 654 | 415 | 22 | 49 | 679 | 55 | 666 | 1.70e-63 | 228 |
| Msa0738500 | AT3G22170.1 | 26.606 | 654 | 415 | 22 | 49 | 679 | 55 | 666 | 1.70e-63 | 228 |
| Msa0738500 | AT3G06250.2 | 25.868 | 576 | 358 | 13 | 61 | 627 | 190 | 705 | 1.55e-57 | 210 |
| Msa0738500 | AT3G06250.1 | 25.868 | 576 | 358 | 13 | 61 | 627 | 190 | 705 | 1.55e-57 | 210 |
| Msa0738500 | AT3G06250.3 | 25.868 | 576 | 358 | 13 | 61 | 627 | 190 | 705 | 1.55e-57 | 210 |
| Msa0738500 | AT5G18960.2 | 25.538 | 650 | 403 | 16 | 47 | 682 | 197 | 779 | 2.86e-56 | 206 |
| Msa0738500 | AT5G18960.1 | 25.538 | 650 | 403 | 16 | 47 | 682 | 197 | 779 | 2.86e-56 | 206 |
| Msa0738500 | AT2G27110.2 | 26.164 | 623 | 406 | 17 | 61 | 675 | 49 | 625 | 1.82e-55 | 205 |
| Msa0738500 | AT2G27110.1 | 26.164 | 623 | 406 | 17 | 61 | 675 | 49 | 625 | 1.82e-55 | 205 |
| Msa0738500 | AT2G27110.3 | 28.604 | 444 | 298 | 11 | 240 | 675 | 48 | 480 | 1.50e-51 | 192 |
| Msa0738500 | AT2G32250.7 | 23.975 | 634 | 407 | 13 | 67 | 691 | 3 | 570 | 2.86e-51 | 192 |
| Msa0738500 | AT2G32250.5 | 25.682 | 440 | 315 | 5 | 256 | 691 | 180 | 611 | 2.32e-48 | 183 |
| Msa0738500 | AT2G32250.8 | 25.682 | 440 | 315 | 5 | 256 | 691 | 139 | 570 | 2.98e-48 | 183 |
| Msa0738500 | AT2G32250.2 | 25.682 | 440 | 315 | 5 | 256 | 691 | 180 | 611 | 3.30e-48 | 183 |
| Msa0738500 | AT2G32250.4 | 25.682 | 440 | 315 | 5 | 256 | 691 | 180 | 611 | 3.30e-48 | 183 |
| Msa0738500 | AT2G32250.6 | 25.682 | 440 | 315 | 5 | 256 | 691 | 180 | 611 | 3.44e-48 | 183 |
| Msa0738500 | AT2G32250.1 | 25.682 | 440 | 315 | 5 | 256 | 691 | 180 | 611 | 3.44e-48 | 183 |
| Msa0738500 | AT2G32250.3 | 25.682 | 440 | 315 | 5 | 256 | 691 | 180 | 611 | 3.44e-48 | 183 |
| Msa0738500 | AT4G38170.1 | 30.000 | 390 | 262 | 6 | 244 | 627 | 16 | 400 | 9.85e-48 | 178 |
| Msa0738500 | AT4G19990.3 | 26.271 | 590 | 354 | 17 | 63 | 625 | 23 | 558 | 1.76e-47 | 181 |
| Msa0738500 | AT4G19990.4 | 26.271 | 590 | 354 | 17 | 63 | 625 | 23 | 558 | 1.76e-47 | 181 |
| Msa0738500 | AT4G19990.5 | 26.271 | 590 | 354 | 17 | 63 | 625 | 23 | 558 | 1.86e-47 | 181 |
| Msa0738500 | AT4G19990.7 | 26.271 | 590 | 354 | 17 | 63 | 625 | 37 | 572 | 2.41e-47 | 180 |
| Msa0738500 | AT4G19990.6 | 26.271 | 590 | 354 | 17 | 63 | 625 | 23 | 558 | 2.79e-47 | 180 |
| Msa0738500 | AT4G19990.2 | 26.271 | 590 | 354 | 17 | 63 | 625 | 23 | 558 | 2.79e-47 | 180 |
| Msa0738500 | AT1G52520.1 | 25.970 | 593 | 369 | 18 | 61 | 624 | 85 | 636 | 1.98e-44 | 171 |
| Msa0738500 | AT4G19990.1 | 25.746 | 536 | 333 | 14 | 112 | 625 | 9 | 501 | 5.03e-43 | 167 |
| Msa0738500 | AT1G80010.1 | 24.228 | 615 | 365 | 19 | 61 | 624 | 95 | 659 | 8.64e-40 | 157 |
Find 137 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTACATGACTAGATTT+TGG | 0.131548 | 5_1:-56253721 | None:intergenic |
| TCTTTACCCATCGTAAATTT+TGG | 0.158198 | 5_1:+56253089 | Msa0738500:CDS |
| TCTGAAGTATTGTTAATTAA+TGG | 0.164332 | 5_1:+56254497 | Msa0738500:three_prime_UTR |
| CCAATTAAAACTTACTTATT+AGG | 0.177601 | 5_1:-56254120 | None:intergenic |
| ATGAGATGCCTCTTGGAATA+TGG | 0.196486 | 5_1:+56252588 | Msa0738500:CDS |
| TTCTCACAACCACGAGTTAT+TGG | 0.199264 | 5_1:+56252166 | Msa0738500:CDS |
| ATCACATGTTCTTGAGTTTC+AGG | 0.210618 | 5_1:-56253877 | None:intergenic |
| ACAGTTTGATCAAAACTATT+TGG | 0.235348 | 5_1:-56254271 | None:intergenic |
| CTCATGTTGAAGCAACTTAA+AGG | 0.248230 | 5_1:-56253443 | None:intergenic |
| TGAGCAGTCTTGATTTCTTT+TGG | 0.253030 | 5_1:-56251290 | None:intergenic |
| TGTTTATTTGCAAAACAAAA+TGG | 0.260407 | 5_1:+56251900 | Msa0738500:CDS |
| AAAATCTGTCAAACTTGTTT+TGG | 0.261322 | 5_1:-56253206 | None:intergenic |
| ATTCGTGCATATGAAGCTTT+TGG | 0.265394 | 5_1:+56252524 | Msa0738500:CDS |
| CAATATGAATTCACAATTGA+TGG | 0.266214 | 5_1:+56252458 | Msa0738500:CDS |
| CTGAAGTATTGTTAATTAAT+GGG | 0.295771 | 5_1:+56254498 | Msa0738500:three_prime_UTR |
| TTCCTTCGCATGGGCTATAA+AGG | 0.299718 | 5_1:+56252679 | Msa0738500:CDS |
| AATATCATCATAAAGATAAA+AGG | 0.310779 | 5_1:+56253850 | Msa0738500:CDS |
| TCAAGAACATGTGATTGATT+TGG | 0.314506 | 5_1:+56253885 | Msa0738500:CDS |
| CATCAATTGTGAATTCATAT+TGG | 0.326055 | 5_1:-56252457 | None:intergenic |
| GCAGCTTCAACCCCTCCTTT+TGG | 0.339248 | 5_1:-56253991 | None:intergenic |
| ATTCAATCATATAGTGGTAT+TGG | 0.341059 | 5_1:+56252368 | Msa0738500:CDS |
| ACTCTCGCTATAAGACTTAC+AGG | 0.343612 | 5_1:-56252278 | None:intergenic |
| CAAATTGGAGCATATTGTTT+GGG | 0.347369 | 5_1:+56252487 | Msa0738500:CDS |
| GAGCATATTGTTTGGGCATT+TGG | 0.348974 | 5_1:+56252494 | Msa0738500:CDS |
| CCTTTACCCTTTACTTTGTT+CGG | 0.349412 | 5_1:+56251344 | Msa0738500:five_prime_UTR |
| ACAAATTGGAGCATATTGTT+TGG | 0.352856 | 5_1:+56252486 | Msa0738500:CDS |
| AATTGATGGAAGTAACAAAT+TGG | 0.358783 | 5_1:+56252472 | Msa0738500:CDS |
| ATGACAACGACGAGGCTTCT+TGG | 0.366012 | 5_1:-56254013 | None:intergenic |
| TCAGTCTCTAATTCGATGTT+TGG | 0.372448 | 5_1:+56253771 | Msa0738500:CDS |
| AACGTCACAGTCAGCATTGT+TGG | 0.377007 | 5_1:-56253920 | None:intergenic |
| ATGGTCTCACAGTTTGGTTT+GGG | 0.387072 | 5_1:+56253043 | Msa0738500:CDS |
| GTAGTTACTAAGAGAAGAAT+TGG | 0.389295 | 5_1:+56252107 | Msa0738500:CDS |
| AATGGTCTCACAGTTTGGTT+TGG | 0.398201 | 5_1:+56253042 | Msa0738500:CDS |
| CCTCAAGTCACTAACATTGA+TGG | 0.399508 | 5_1:+56251711 | Msa0738500:CDS |
| AGTGAATTAGACAGATGAAT+TGG | 0.402311 | 5_1:+56254326 | Msa0738500:three_prime_UTR |
| GCAATGGCTTCTTTAATTGA+AGG | 0.406562 | 5_1:-56252851 | None:intergenic |
| TCAAATATTTGCCCTTCAAA+AGG | 0.411166 | 5_1:-56251741 | None:intergenic |
| ATACTAGTAATTACACAGTT+TGG | 0.415911 | 5_1:-56254456 | None:intergenic |
| ATCCATCGGGTGTTTATAAG+AGG | 0.417116 | 5_1:+56251979 | Msa0738500:CDS |
| TTTGCTGGAATGACAACAAC+AGG | 0.418779 | 5_1:+56253139 | Msa0738500:CDS |
| GTCATCTTGAAATAGTGAAT+TGG | 0.425948 | 5_1:+56254235 | Msa0738500:three_prime_UTR |
| AAAGTAATGGTCTCACAGTT+TGG | 0.427267 | 5_1:+56253037 | Msa0738500:CDS |
| TGAGATGCCTCTTGGAATAT+GGG | 0.433904 | 5_1:+56252589 | Msa0738500:CDS |
| TTGGGCCTTAGCTTATTTGA+AGG | 0.435274 | 5_1:+56253108 | Msa0738500:CDS |
| TATACGACCACCATCAACTT+TGG | 0.437731 | 5_1:-56253533 | None:intergenic |
| CGAACAAAGTAAAGGGTAAA+GGG | 0.438866 | 5_1:-56251343 | None:intergenic |
| CTTTAAACATGAGTTTCATA+AGG | 0.439926 | 5_1:+56252973 | Msa0738500:CDS |
| GACGAGGCATGTTCTTCAAT+AGG | 0.443666 | 5_1:-56253403 | None:intergenic |
| TGATTAGTTCCACCACAATC+TGG | 0.446933 | 5_1:-56254039 | None:intergenic |
| AACCGTTATGAGATGCCTCT+TGG | 0.448749 | 5_1:+56252581 | Msa0738500:CDS |
| AAAGACAAGTGAACGAGAAC+AGG | 0.453486 | 5_1:+56253807 | Msa0738500:CDS |
| CATGTAATAAACTGCAATGA+TGG | 0.453622 | 5_1:+56253733 | Msa0738500:CDS |
| TCAGCTTCCTCCATCTTGTT+CGG | 0.457961 | 5_1:+56251310 | Msa0738500:five_prime_UTR |
| GGAAAATGTGTTGTAATATG+AGG | 0.458305 | 5_1:-56253382 | None:intergenic |
| GTTTGTCATCGTGGTGGTAT+TGG | 0.458689 | 5_1:+56252008 | Msa0738500:CDS |
| ATGCGATCTTGATCAACAAT+TGG | 0.465554 | 5_1:-56252230 | None:intergenic |
| CTCACAGTTTGGTTTGGGTG+TGG | 0.468983 | 5_1:+56253048 | Msa0738500:CDS |
| ATAACGGTTTATTCTATATG+TGG | 0.472493 | 5_1:-56252567 | None:intergenic |
| CCGAACAAAGTAAAGGGTAA+AGG | 0.477098 | 5_1:-56251344 | None:intergenic |
| TATAAGACTTACAGGGCAAC+CGG | 0.483233 | 5_1:-56252270 | None:intergenic |
| CTTGAGTTAGAGAAAAGAAC+AGG | 0.494786 | 5_1:+56252302 | Msa0738500:CDS |
| AAAACAAAAGGTCGGCCAAA+AGG | 0.495104 | 5_1:+56253961 | Msa0738500:CDS |
| TTGATAGGATCATGAAGGGT+TGG | 0.498564 | 5_1:+56254207 | Msa0738500:three_prime_UTR |
| TGAAGCAACTTAAAGGCATA+AGG | 0.499495 | 5_1:-56253436 | None:intergenic |
| AGAAGATTTCTTCCTTCGCA+TGG | 0.503824 | 5_1:+56252669 | Msa0738500:CDS |
| CGTTGTCATGTTCCAGATTG+TGG | 0.504732 | 5_1:+56254027 | Msa0738500:CDS |
| AATTGTGAATTCATATTGGA+AGG | 0.507660 | 5_1:-56252453 | None:intergenic |
| CCAAAAGGATCAAGACCAAA+AGG | 0.514192 | 5_1:+56253976 | Msa0738500:CDS |
| CTTTCTCGTCTCCATCGAAA+AGG | 0.515070 | 5_1:-56253688 | None:intergenic |
| GTCAAAATTAGAAATCAAGC+TGG | 0.517568 | 5_1:+56253325 | Msa0738500:CDS |
| TTTAATTGAAGGATCTTGAT+CGG | 0.518039 | 5_1:-56252840 | None:intergenic |
| TGGTAATAATAAACTATAGC+AGG | 0.519610 | 5_1:-56254436 | None:intergenic |
| ATTGGAATGTTACGATAAGC+AGG | 0.522557 | 5_1:-56252212 | None:intergenic |
| TAGTTTGATCAAAGCAGCTT+CGG | 0.523562 | 5_1:-56254349 | None:intergenic |
| ATGTTATTGACTTGAGGCAA+GGG | 0.525418 | 5_1:-56251813 | None:intergenic |
| TAAGCAATGATGCTAGTGAT+TGG | 0.525487 | 5_1:+56251682 | Msa0738500:CDS |
| ACCACGCAAAACTGTTGAAG+TGG | 0.526679 | 5_1:+56252034 | Msa0738500:CDS |
| TTAGAGAAAAGAACAGGCAC+AGG | 0.528687 | 5_1:+56252308 | Msa0738500:CDS |
| TGGGTTGGTGTTGATAATCA+TGG | 0.529258 | 5_1:+56252608 | Msa0738500:CDS |
| ATACTATTATTGTCTAAAGC+CGG | 0.531055 | 5_1:+56252251 | Msa0738500:CDS |
| TTCCAAGAGGCATCTCATAA+CGG | 0.531646 | 5_1:-56252583 | None:intergenic |
| CAACATCATACCAAAGTTGA+TGG | 0.538288 | 5_1:+56253523 | Msa0738500:CDS |
| TGAACGAGAATGGAAAGTAA+TGG | 0.544871 | 5_1:+56253024 | Msa0738500:CDS |
| TTGCACAACATAAGAGCCAT+TGG | 0.551354 | 5_1:-56253503 | None:intergenic |
| CTCAAGTCACTAACATTGAT+GGG | 0.551567 | 5_1:+56251712 | Msa0738500:CDS |
| TAAGAGAAGAATTGGCATTG+AGG | 0.553953 | 5_1:+56252115 | Msa0738500:CDS |
| GAAGATTTCTTCCTTCGCAT+GGG | 0.556681 | 5_1:+56252670 | Msa0738500:CDS |
| GTGCTTTGATAGGATCATGA+AGG | 0.556862 | 5_1:+56254202 | Msa0738500:three_prime_UTR |
| CAAGTCAATAACATTGATGA+GGG | 0.558520 | 5_1:+56251822 | Msa0738500:CDS |
| AAAGTCCTTCAAATAAGCTA+AGG | 0.560983 | 5_1:-56253113 | None:intergenic |
| ACATGTGATTGATTTGGAAG+AGG | 0.565753 | 5_1:+56253891 | Msa0738500:CDS |
| GTTTGGCAATTCCATTGCAA+TGG | 0.567761 | 5_1:-56252867 | None:intergenic |
| ATGTGATTGTAGTGCAAAGA+TGG | 0.570079 | 5_1:+56252085 | Msa0738500:CDS |
| ATGTTAGTGACTTGAGGCAA+GGG | 0.572230 | 5_1:-56251705 | None:intergenic |
| GTGTCAGAAGAGAATCCATC+GGG | 0.572540 | 5_1:+56251966 | Msa0738500:CDS |
| TCATCAATGTTATTGACTTG+AGG | 0.573525 | 5_1:-56251819 | None:intergenic |
| AATTAAAGAAGCCATTGCAA+TGG | 0.576797 | 5_1:+56252856 | Msa0738500:CDS |
| TAGAAATCAAGCTGGAGAAG+AGG | 0.577533 | 5_1:+56253333 | Msa0738500:CDS |
| CGAGTTATTGGATGACAAAG+AGG | 0.580002 | 5_1:+56252178 | Msa0738500:CDS |
| AATGTTATTGACTTGAGGCA+AGG | 0.580693 | 5_1:-56251814 | None:intergenic |
| AGTCACTAACATTGATGGGT+GGG | 0.589348 | 5_1:+56251716 | Msa0738500:CDS |
| TTGTCGCAAAGCTGTCAAGT+TGG | 0.589381 | 5_1:+56252918 | Msa0738500:CDS |
| TCATCATATCTCGAACCTAG+TGG | 0.597376 | 5_1:-56252950 | None:intergenic |
| AATGTTAGTGACTTGAGGCA+AGG | 0.597462 | 5_1:-56251706 | None:intergenic |
| AGGGAATTTGTTTGTCATCG+TGG | 0.598966 | 5_1:+56251999 | Msa0738500:CDS |
| TCCCTCTTATAAACACCCGA+TGG | 0.599604 | 5_1:-56251981 | None:intergenic |
| GCAGCAATTGAAGCTGCCAA+TGG | 0.600590 | 5_1:+56253487 | Msa0738500:CDS |
| TACCTTTATAGCCCATGCGA+AGG | 0.601051 | 5_1:-56252681 | None:intergenic |
| TATCAGATGACCGAACAAGA+TGG | 0.602390 | 5_1:-56251320 | None:intergenic |
| TCAAGTCAATAACATTGATG+AGG | 0.603097 | 5_1:+56251821 | Msa0738500:CDS |
| CTGTTGAAGTGGAAAATCAA+AGG | 0.606328 | 5_1:+56252045 | Msa0738500:CDS |
| CTTTGTCATCCAATAACTCG+TGG | 0.606716 | 5_1:-56252175 | None:intergenic |
| AAGGATCAAGACCAAAAGGA+GGG | 0.611165 | 5_1:+56253980 | Msa0738500:CDS |
| CCATCAATGTTAGTGACTTG+AGG | 0.613145 | 5_1:-56251711 | None:intergenic |
| CTAAGGCCCAAAATTTACGA+TGG | 0.615020 | 5_1:-56253096 | None:intergenic |
| TAAGGCCCAAAATTTACGAT+GGG | 0.615697 | 5_1:-56253095 | None:intergenic |
| ATGCCTCTTGGAATATGGGT+TGG | 0.616141 | 5_1:+56252593 | Msa0738500:CDS |
| GAATTTGTTTGTCATCGTGG+TGG | 0.618777 | 5_1:+56252002 | Msa0738500:CDS |
| AAGTCACTAACATTGATGGG+TGG | 0.624878 | 5_1:+56251715 | Msa0738500:CDS |
| TCCATCGGGTGTTTATAAGA+GGG | 0.625908 | 5_1:+56251980 | Msa0738500:CDS |
| ACGAGAACAGGTTGCCACAA+GGG | 0.630576 | 5_1:+56253819 | Msa0738500:CDS |
| TGTGTCAGAAGAGAATCCAT+CGG | 0.632507 | 5_1:+56251965 | Msa0738500:CDS |
| AACGAGAACAGGTTGCCACA+AGG | 0.633734 | 5_1:+56253818 | Msa0738500:CDS |
| TACTTATTAGGAGATTGAGA+AGG | 0.635742 | 5_1:-56254108 | None:intergenic |
| TGTCATGTTCCAGATTGTGG+TGG | 0.637809 | 5_1:+56254030 | Msa0738500:CDS |
| CTCTCGCTATAAGACTTACA+GGG | 0.647869 | 5_1:-56252277 | None:intergenic |
| AAAGGATCAAGACCAAAAGG+AGG | 0.655085 | 5_1:+56253979 | Msa0738500:CDS |
| CAGATGACCGAACAAGATGG+AGG | 0.662759 | 5_1:-56251317 | None:intergenic |
| TAGAGACTGAAATTTAGCAG+AGG | 0.662901 | 5_1:-56253758 | None:intergenic |
| ACACCAACCCATATTCCAAG+AGG | 0.676376 | 5_1:-56252596 | None:intergenic |
| TGCTTTGATAGGATCATGAA+GGG | 0.676443 | 5_1:+56254203 | Msa0738500:three_prime_UTR |
| AAGTTTGAAAGATCGAGATG+AGG | 0.682349 | 5_1:+56252430 | Msa0738500:CDS |
| CATCATACCAAAGTTGATGG+TGG | 0.683172 | 5_1:+56253526 | Msa0738500:CDS |
| AGGATCAAGACCAAAAGGAG+GGG | 0.696841 | 5_1:+56253981 | Msa0738500:CDS |
| AAGTCAATAACATTGATGAG+GGG | 0.714581 | 5_1:+56251823 | Msa0738500:CDS |
| ATAAGGTGTGAGTATAGACG+AGG | 0.720548 | 5_1:-56253419 | None:intergenic |
| TCTGGAACATGACAACGACG+AGG | 0.797744 | 5_1:-56254021 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAAATAAAATAGAATTT+GGG | - | chr5_1:56251586-56251605 | None:intergenic | 10.0% |
| !! | ATCATAAATAAAATAGAATT+TGG | - | chr5_1:56251587-56251606 | None:intergenic | 10.0% |
| !!! | TAATATTAACTGTATTTTTA+TGG | + | chr5_1:56254180-56254199 | Msa0738500:three_prime_UTR | 10.0% |
| !! | TTGAAAAAATAATATTTACC+TGG | - | chr5_1:56251417-56251436 | None:intergenic | 15.0% |
| !! | TTAGTTAAGAATTATATACA+TGG | - | chr5_1:56251531-56251550 | None:intergenic | 15.0% |
| !! | CATAAATAAAATAGAATTTG+GGG | - | chr5_1:56251585-56251604 | None:intergenic | 15.0% |
| !!! | AATTTTATTCAATCATATAG+TGG | + | chr5_1:56252362-56252381 | Msa0738500:CDS | 15.0% |
| !! | AATATCATCATAAAGATAAA+AGG | + | chr5_1:56253850-56253869 | Msa0738500:CDS | 15.0% |
| !!! | TATGTAATTAGTATATTTTG+TGG | + | chr5_1:56254370-56254389 | Msa0738500:three_prime_UTR | 15.0% |
| !!! | GTTTGTTTCTTTTCTTTTAA+TGG | + | chr5_1:56251461-56251480 | Msa0738500:intron | 20.0% |
| !! | TGTTTATTTGCAAAACAAAA+TGG | + | chr5_1:56251900-56251919 | Msa0738500:CDS | 20.0% |
| !!! | AACAAAATGGATTTTCTATT+AGG | + | chr5_1:56251913-56251932 | Msa0738500:CDS | 20.0% |
| !!! | CTAATATCTTTTTCTAAGAA+TGG | - | chr5_1:56252341-56252360 | None:intergenic | 20.0% |
| !!! | CATGGAAATTCAATTTTTTT+TGG | + | chr5_1:56252626-56252645 | Msa0738500:CDS | 20.0% |
| !!! | TGATTGTTATATTTTTGTGT+AGG | + | chr5_1:56253291-56253310 | Msa0738500:intron | 20.0% |
| !!! | TTATTACATGACTAGATTTT+GGG | - | chr5_1:56253723-56253742 | None:intergenic | 20.0% |
| !!! | TTTATTACATGACTAGATTT+TGG | - | chr5_1:56253724-56253743 | None:intergenic | 20.0% |
| !! | CCAATTAAAACTTACTTATT+AGG | - | chr5_1:56254123-56254142 | None:intergenic | 20.0% |
| !!! | CCTAATAAGTAAGTTTTAAT+TGG | + | chr5_1:56254120-56254139 | Msa0738500:exon | 20.0% |
| ! | AACACAAACTTAGCTAATTT+GGG | - | chr5_1:56251503-56251522 | None:intergenic | 25.0% |
| ! | AAACACAAACTTAGCTAATT+TGG | - | chr5_1:56251504-56251523 | None:intergenic | 25.0% |
| !! | TCAAATATTTTCCCTTCAAA+AGG | - | chr5_1:56251852-56251871 | None:intergenic | 25.0% |
| !! | ATACTATTATTGTCTAAAGC+CGG | + | chr5_1:56252251-56252270 | Msa0738500:CDS | 25.0% |
| ! | ATTCAATCATATAGTGGTAT+TGG | + | chr5_1:56252368-56252387 | Msa0738500:CDS | 25.0% |
| ! | AATTGTGAATTCATATTGGA+AGG | - | chr5_1:56252456-56252475 | None:intergenic | 25.0% |
| ! | CATCAATTGTGAATTCATAT+TGG | - | chr5_1:56252460-56252479 | None:intergenic | 25.0% |
| ! | CAATATGAATTCACAATTGA+TGG | + | chr5_1:56252458-56252477 | Msa0738500:CDS | 25.0% |
| ! | AATTGATGGAAGTAACAAAT+TGG | + | chr5_1:56252472-56252491 | Msa0738500:CDS | 25.0% |
| ! | ATAACGGTTTATTCTATATG+TGG | - | chr5_1:56252570-56252589 | None:intergenic | 25.0% |
| ! | TTTAATTGAAGGATCTTGAT+CGG | - | chr5_1:56252843-56252862 | None:intergenic | 25.0% |
| ! | CTTTAAACATGAGTTTCATA+AGG | + | chr5_1:56252973-56252992 | Msa0738500:CDS | 25.0% |
| !!! | AAAATCTGTCAAACTTGTTT+TGG | - | chr5_1:56253209-56253228 | None:intergenic | 25.0% |
| !!! | TGTTATATTTTTGTGTAGGT+TGG | + | chr5_1:56253295-56253314 | Msa0738500:intron | 25.0% |
| !! | TGTAAAGAGTTTCAATTTTC+AGG | + | chr5_1:56253595-56253614 | Msa0738500:CDS | 25.0% |
| ! | TTGTTTCAAAAACAAAAGGT+CGG | + | chr5_1:56253953-56253972 | Msa0738500:CDS | 25.0% |
| ! | TCCAAACAAAAAGAGAAAAA+TGG | + | chr5_1:56254077-56254096 | Msa0738500:CDS | 25.0% |
| !!! | TCCATTTTTCTCTTTTTGTT+TGG | - | chr5_1:56254081-56254100 | None:intergenic | 25.0% |
| !!! | TATTTTTATGGTGCTTTGAT+AGG | + | chr5_1:56254192-56254211 | Msa0738500:three_prime_UTR | 25.0% |
| ! | ACAGTTTGATCAAAACTATT+TGG | - | chr5_1:56254274-56254293 | None:intergenic | 25.0% |
| !! | TGTGTAATTAGTGAATTTTG+TGG | + | chr5_1:56254291-56254310 | Msa0738500:three_prime_UTR | 25.0% |
| ! | TGGTAATAATAAACTATAGC+AGG | - | chr5_1:56254439-56254458 | None:intergenic | 25.0% |
| ! | ATACTAGTAATTACACAGTT+TGG | - | chr5_1:56254459-56254478 | None:intergenic | 25.0% |
| ! | TTTTGACCGAACAAAGTAAA+GGG | - | chr5_1:56251353-56251372 | None:intergenic | 30.0% |
| ! | TTTTTGACCGAACAAAGTAA+AGG | - | chr5_1:56251354-56251373 | None:intergenic | 30.0% |
| AACAAACAATGAGTTCAAGA+TGG | - | chr5_1:56251448-56251467 | None:intergenic | 30.0% | |
| ACACAAACTTAGCTAATTTG+GGG | - | chr5_1:56251502-56251521 | None:intergenic | 30.0% | |
| TCAAATATTTGCCCTTCAAA+AGG | - | chr5_1:56251744-56251763 | None:intergenic | 30.0% | |
| !! | TCATCAATGTTATTGACTTG+AGG | - | chr5_1:56251822-56251841 | None:intergenic | 30.0% |
| TCAAGTCAATAACATTGATG+AGG | + | chr5_1:56251821-56251840 | Msa0738500:CDS | 30.0% | |
| CAAGTCAATAACATTGATGA+GGG | + | chr5_1:56251822-56251841 | Msa0738500:CDS | 30.0% | |
| AAGTCAATAACATTGATGAG+GGG | + | chr5_1:56251823-56251842 | Msa0738500:CDS | 30.0% | |
| GTAGTTACTAAGAGAAGAAT+TGG | + | chr5_1:56252107-56252126 | Msa0738500:CDS | 30.0% | |
| ! | AATTGGCATTGAGGAAAAAT+GGG | + | chr5_1:56252124-56252143 | Msa0738500:CDS | 30.0% |
| ACAAATTGGAGCATATTGTT+TGG | + | chr5_1:56252486-56252505 | Msa0738500:CDS | 30.0% | |
| CAAATTGGAGCATATTGTTT+GGG | + | chr5_1:56252487-56252506 | Msa0738500:CDS | 30.0% | |
| ! | ATTTTCCTTTCACAAAAGCT+AGG | - | chr5_1:56252802-56252821 | None:intergenic | 30.0% |
| ! | TGATCGGTAAGAATTGTTTT+TGG | - | chr5_1:56252827-56252846 | None:intergenic | 30.0% |
| AATTAAAGAAGCCATTGCAA+TGG | + | chr5_1:56252856-56252875 | Msa0738500:CDS | 30.0% | |
| ! | CAAAATGCATGTTTTGTGTT+TGG | - | chr5_1:56252887-56252906 | None:intergenic | 30.0% |
| ! | CAAAACATGCATTTTGCATA+TGG | + | chr5_1:56252891-56252910 | Msa0738500:CDS | 30.0% |
| ! | TCTTTACCCATCGTAAATTT+TGG | + | chr5_1:56253089-56253108 | Msa0738500:CDS | 30.0% |
| ! | CTTTACCCATCGTAAATTTT+GGG | + | chr5_1:56253090-56253109 | Msa0738500:CDS | 30.0% |
| AAAGTCCTTCAAATAAGCTA+AGG | - | chr5_1:56253116-56253135 | None:intergenic | 30.0% | |
| !!! | TTGAAGGACTTTTTTTTTGC+TGG | + | chr5_1:56253124-56253143 | Msa0738500:CDS | 30.0% |
| GTCAAAATTAGAAATCAAGC+TGG | + | chr5_1:56253325-56253344 | Msa0738500:CDS | 30.0% | |
| GGAAAATGTGTTGTAATATG+AGG | - | chr5_1:56253385-56253404 | None:intergenic | 30.0% | |
| !! | CGAAAAGGAAGATATTTTGA+TGG | - | chr5_1:56253676-56253695 | None:intergenic | 30.0% |
| ! | CAAAATATCTTCCTTTTCGA+TGG | + | chr5_1:56253677-56253696 | Msa0738500:CDS | 30.0% |
| CATGTAATAAACTGCAATGA+TGG | + | chr5_1:56253733-56253752 | Msa0738500:CDS | 30.0% | |
| TCAAGAACATGTGATTGATT+TGG | + | chr5_1:56253885-56253904 | Msa0738500:CDS | 30.0% | |
| !!! | CCTTTTGTTTTTGAAACAAC+AGG | - | chr5_1:56253952-56253971 | None:intergenic | 30.0% |
| !! | CCTGTTGTTTCAAAAACAAA+AGG | + | chr5_1:56253949-56253968 | Msa0738500:CDS | 30.0% |
| TACTTATTAGGAGATTGAGA+AGG | - | chr5_1:56254111-56254130 | None:intergenic | 30.0% | |
| GTCATCTTGAAATAGTGAAT+TGG | + | chr5_1:56254235-56254254 | Msa0738500:three_prime_UTR | 30.0% | |
| AGTGAATTAGACAGATGAAT+TGG | + | chr5_1:56254326-56254345 | Msa0738500:three_prime_UTR | 30.0% | |
| CGAACAAAGTAAAGGGTAAA+GGG | - | chr5_1:56251346-56251365 | None:intergenic | 35.0% | |
| CCTTTACCCTTTACTTTGTT+CGG | + | chr5_1:56251344-56251363 | Msa0738500:five_prime_UTR | 35.0% | |
| TCAGTCAAAAAGCTAATTCC+AGG | + | chr5_1:56251396-56251415 | Msa0738500:five_prime_UTR | 35.0% | |
| CACAAACTTAGCTAATTTGG+GGG | - | chr5_1:56251501-56251520 | None:intergenic | 35.0% | |
| TAAGCAATGATGCTAGTGAT+TGG | + | chr5_1:56251682-56251701 | Msa0738500:CDS | 35.0% | |
| CTCAAGTCACTAACATTGAT+GGG | + | chr5_1:56251712-56251731 | Msa0738500:CDS | 35.0% | |
| !! | ATGTTATTGACTTGAGGCAA+GGG | - | chr5_1:56251816-56251835 | None:intergenic | 35.0% |
| !! | AATGTTATTGACTTGAGGCA+AGG | - | chr5_1:56251817-56251836 | None:intergenic | 35.0% |
| CTGTTGAAGTGGAAAATCAA+AGG | + | chr5_1:56252045-56252064 | Msa0738500:CDS | 35.0% | |
| ATGTGATTGTAGTGCAAAGA+TGG | + | chr5_1:56252085-56252104 | Msa0738500:CDS | 35.0% | |
| TAAGAGAAGAATTGGCATTG+AGG | + | chr5_1:56252115-56252134 | Msa0738500:CDS | 35.0% | |
| ! | GAATTGGCATTGAGGAAAAA+TGG | + | chr5_1:56252123-56252142 | Msa0738500:CDS | 35.0% |
| ATTGGAATGTTACGATAAGC+AGG | - | chr5_1:56252215-56252234 | None:intergenic | 35.0% | |
| ATGCGATCTTGATCAACAAT+TGG | - | chr5_1:56252233-56252252 | None:intergenic | 35.0% | |
| CTTGAGTTAGAGAAAAGAAC+AGG | + | chr5_1:56252302-56252321 | Msa0738500:CDS | 35.0% | |
| AAGTTTGAAAGATCGAGATG+AGG | + | chr5_1:56252430-56252449 | Msa0738500:CDS | 35.0% | |
| ! | ATTCGTGCATATGAAGCTTT+TGG | + | chr5_1:56252524-56252543 | Msa0738500:CDS | 35.0% |
| !! | AGTTTCCTAGCTTTTGTGAA+AGG | + | chr5_1:56252794-56252813 | Msa0738500:CDS | 35.0% |
| GCAATGGCTTCTTTAATTGA+AGG | - | chr5_1:56252854-56252873 | None:intergenic | 35.0% | |
| !!! | AGTTGGTTTTCTTTTCCACT+AGG | + | chr5_1:56252935-56252954 | Msa0738500:CDS | 35.0% |
| ! | CAGATGATTTTGAACGAGAA+TGG | + | chr5_1:56253014-56253033 | Msa0738500:CDS | 35.0% |
| TGAACGAGAATGGAAAGTAA+TGG | + | chr5_1:56253024-56253043 | Msa0738500:CDS | 35.0% | |
| AAAGTAATGGTCTCACAGTT+TGG | + | chr5_1:56253037-56253056 | Msa0738500:CDS | 35.0% | |
| TAAGGCCCAAAATTTACGAT+GGG | - | chr5_1:56253098-56253117 | None:intergenic | 35.0% | |
| ! | TGAAGCAACTTAAAGGCATA+AGG | - | chr5_1:56253439-56253458 | None:intergenic | 35.0% |
| CTCATGTTGAAGCAACTTAA+AGG | - | chr5_1:56253446-56253465 | None:intergenic | 35.0% | |
| CAACATCATACCAAAGTTGA+TGG | + | chr5_1:56253523-56253542 | Msa0738500:CDS | 35.0% | |
| TAGAGACTGAAATTTAGCAG+AGG | - | chr5_1:56253761-56253780 | None:intergenic | 35.0% | |
| TCAGTCTCTAATTCGATGTT+TGG | + | chr5_1:56253771-56253790 | Msa0738500:CDS | 35.0% | |
| ! | GATATTTTCTAACTCCCTTG+TGG | - | chr5_1:56253836-56253855 | None:intergenic | 35.0% |
| ATCACATGTTCTTGAGTTTC+AGG | - | chr5_1:56253880-56253899 | None:intergenic | 35.0% | |
| !! | ACATGTGATTGATTTGGAAG+AGG | + | chr5_1:56253891-56253910 | Msa0738500:CDS | 35.0% |
| TGCTTTGATAGGATCATGAA+GGG | + | chr5_1:56254203-56254222 | Msa0738500:three_prime_UTR | 35.0% | |
| TAGTTTGATCAAAGCAGCTT+CGG | - | chr5_1:56254352-56254371 | None:intergenic | 35.0% | |
| TATCAGATGACCGAACAAGA+TGG | - | chr5_1:56251323-56251342 | None:intergenic | 40.0% | |
| CCGAACAAAGTAAAGGGTAA+AGG | - | chr5_1:56251347-56251366 | None:intergenic | 40.0% | |
| !! | GCTTTTTGACTGAAGCAAGA+TGG | - | chr5_1:56251389-56251408 | None:intergenic | 40.0% |
| ATGTTAGTGACTTGAGGCAA+GGG | - | chr5_1:56251708-56251727 | None:intergenic | 40.0% | |
| AATGTTAGTGACTTGAGGCA+AGG | - | chr5_1:56251709-56251728 | None:intergenic | 40.0% | |
| CCATCAATGTTAGTGACTTG+AGG | - | chr5_1:56251714-56251733 | None:intergenic | 40.0% | |
| CCTCAAGTCACTAACATTGA+TGG | + | chr5_1:56251711-56251730 | Msa0738500:CDS | 40.0% | |
| AAGTCACTAACATTGATGGG+TGG | + | chr5_1:56251715-56251734 | Msa0738500:CDS | 40.0% | |
| ! | AGTCACTAACATTGATGGGT+GGG | + | chr5_1:56251716-56251735 | Msa0738500:CDS | 40.0% |
| ! | ATGAGGGGATTCCTTTTGAA+GGG | + | chr5_1:56251838-56251857 | Msa0738500:CDS | 40.0% |
| TGTGTCAGAAGAGAATCCAT+CGG | + | chr5_1:56251965-56251984 | Msa0738500:CDS | 40.0% | |
| ATCCATCGGGTGTTTATAAG+AGG | + | chr5_1:56251979-56251998 | Msa0738500:CDS | 40.0% | |
| TCCATCGGGTGTTTATAAGA+GGG | + | chr5_1:56251980-56251999 | Msa0738500:CDS | 40.0% | |
| ! | AGGGAATTTGTTTGTCATCG+TGG | + | chr5_1:56251999-56252018 | Msa0738500:CDS | 40.0% |
| ! | GAATTTGTTTGTCATCGTGG+TGG | + | chr5_1:56252002-56252021 | Msa0738500:CDS | 40.0% |
| TTCTCACAACCACGAGTTAT+TGG | + | chr5_1:56252166-56252185 | Msa0738500:CDS | 40.0% | |
| CTTTGTCATCCAATAACTCG+TGG | - | chr5_1:56252178-56252197 | None:intergenic | 40.0% | |
| CGAGTTATTGGATGACAAAG+AGG | + | chr5_1:56252178-56252197 | Msa0738500:CDS | 40.0% | |
| TATAAGACTTACAGGGCAAC+CGG | - | chr5_1:56252273-56252292 | None:intergenic | 40.0% | |
| CTCTCGCTATAAGACTTACA+GGG | - | chr5_1:56252280-56252299 | None:intergenic | 40.0% | |
| ACTCTCGCTATAAGACTTAC+AGG | - | chr5_1:56252281-56252300 | None:intergenic | 40.0% | |
| TTAGAGAAAAGAACAGGCAC+AGG | + | chr5_1:56252308-56252327 | Msa0738500:CDS | 40.0% | |
| GAGCATATTGTTTGGGCATT+TGG | + | chr5_1:56252494-56252513 | Msa0738500:CDS | 40.0% | |
| !! | TTCCAAGAGGCATCTCATAA+CGG | - | chr5_1:56252586-56252605 | None:intergenic | 40.0% |
| ATGAGATGCCTCTTGGAATA+TGG | + | chr5_1:56252588-56252607 | Msa0738500:CDS | 40.0% | |
| TGAGATGCCTCTTGGAATAT+GGG | + | chr5_1:56252589-56252608 | Msa0738500:CDS | 40.0% | |
| !! | TGGGTTGGTGTTGATAATCA+TGG | + | chr5_1:56252608-56252627 | Msa0738500:CDS | 40.0% |
| AGAAGATTTCTTCCTTCGCA+TGG | + | chr5_1:56252669-56252688 | Msa0738500:CDS | 40.0% | |
| GAAGATTTCTTCCTTCGCAT+GGG | + | chr5_1:56252670-56252689 | Msa0738500:CDS | 40.0% | |
| GTTTGGCAATTCCATTGCAA+TGG | - | chr5_1:56252870-56252889 | None:intergenic | 40.0% | |
| TCATCATATCTCGAACCTAG+TGG | - | chr5_1:56252953-56252972 | None:intergenic | 40.0% | |
| AATGGTCTCACAGTTTGGTT+TGG | + | chr5_1:56253042-56253061 | Msa0738500:CDS | 40.0% | |
| ! | ATGGTCTCACAGTTTGGTTT+GGG | + | chr5_1:56253043-56253062 | Msa0738500:CDS | 40.0% |
| CTAAGGCCCAAAATTTACGA+TGG | - | chr5_1:56253099-56253118 | None:intergenic | 40.0% | |
| TTGGGCCTTAGCTTATTTGA+AGG | + | chr5_1:56253108-56253127 | Msa0738500:CDS | 40.0% | |
| TTTGCTGGAATGACAACAAC+AGG | + | chr5_1:56253139-56253158 | Msa0738500:CDS | 40.0% | |
| TAGAAATCAAGCTGGAGAAG+AGG | + | chr5_1:56253333-56253352 | Msa0738500:CDS | 40.0% | |
| ATAAGGTGTGAGTATAGACG+AGG | - | chr5_1:56253422-56253441 | None:intergenic | 40.0% | |
| TTGCACAACATAAGAGCCAT+TGG | - | chr5_1:56253506-56253525 | None:intergenic | 40.0% | |
| !! | CATCATACCAAAGTTGATGG+TGG | + | chr5_1:56253526-56253545 | Msa0738500:CDS | 40.0% |
| TATACGACCACCATCAACTT+TGG | - | chr5_1:56253536-56253555 | None:intergenic | 40.0% | |
| AAAGACAAGTGAACGAGAAC+AGG | + | chr5_1:56253807-56253826 | Msa0738500:CDS | 40.0% | |
| AAAACAAAAGGTCGGCCAAA+AGG | + | chr5_1:56253961-56253980 | Msa0738500:CDS | 40.0% | |
| !!! | CCTTTTGGTCTTGATCCTTT+TGG | - | chr5_1:56253979-56253998 | None:intergenic | 40.0% |
| CCAAAAGGATCAAGACCAAA+AGG | + | chr5_1:56253976-56253995 | Msa0738500:CDS | 40.0% | |
| AAAGGATCAAGACCAAAAGG+AGG | + | chr5_1:56253979-56253998 | Msa0738500:CDS | 40.0% | |
| AAGGATCAAGACCAAAAGGA+GGG | + | chr5_1:56253980-56253999 | Msa0738500:CDS | 40.0% | |
| ! | TGATTAGTTCCACCACAATC+TGG | - | chr5_1:56254042-56254061 | None:intergenic | 40.0% |
| GTGCTTTGATAGGATCATGA+AGG | + | chr5_1:56254202-56254221 | Msa0738500:three_prime_UTR | 40.0% | |
| TTGATAGGATCATGAAGGGT+TGG | + | chr5_1:56254207-56254226 | Msa0738500:three_prime_UTR | 40.0% | |
| TCAGCTTCCTCCATCTTGTT+CGG | + | chr5_1:56251310-56251329 | Msa0738500:five_prime_UTR | 45.0% | |
| !! | ATGGGTGGGTTCCTTTTGAA+GGG | + | chr5_1:56251730-56251749 | Msa0738500:CDS | 45.0% |
| ! | GATGAGGGGATTCCTTTTGA+AGG | + | chr5_1:56251837-56251856 | Msa0738500:CDS | 45.0% |
| GTGTCAGAAGAGAATCCATC+GGG | + | chr5_1:56251966-56251985 | Msa0738500:CDS | 45.0% | |
| TCCCTCTTATAAACACCCGA+TGG | - | chr5_1:56251984-56252003 | None:intergenic | 45.0% | |
| GTTTGTCATCGTGGTGGTAT+TGG | + | chr5_1:56252008-56252027 | Msa0738500:CDS | 45.0% | |
| ACCACGCAAAACTGTTGAAG+TGG | + | chr5_1:56252034-56252053 | Msa0738500:CDS | 45.0% | |
| ! | TCCACTTCAACAGTTTTGCG+TGG | - | chr5_1:56252038-56252057 | None:intergenic | 45.0% |
| ! | TGGCATTGAGGAAAAATGGG+TGG | + | chr5_1:56252127-56252146 | Msa0738500:CDS | 45.0% |
| AACCGTTATGAGATGCCTCT+TGG | + | chr5_1:56252581-56252600 | Msa0738500:CDS | 45.0% | |
| ATGCCTCTTGGAATATGGGT+TGG | + | chr5_1:56252593-56252612 | Msa0738500:CDS | 45.0% | |
| ACACCAACCCATATTCCAAG+AGG | - | chr5_1:56252599-56252618 | None:intergenic | 45.0% | |
| ! | TTCCTTCGCATGGGCTATAA+AGG | + | chr5_1:56252679-56252698 | Msa0738500:CDS | 45.0% |
| TACCTTTATAGCCCATGCGA+AGG | - | chr5_1:56252684-56252703 | None:intergenic | 45.0% | |
| TTGTCGCAAAGCTGTCAAGT+TGG | + | chr5_1:56252918-56252937 | Msa0738500:CDS | 45.0% | |
| GACGAGGCATGTTCTTCAAT+AGG | - | chr5_1:56253406-56253425 | None:intergenic | 45.0% | |
| CTTTCTCGTCTCCATCGAAA+AGG | - | chr5_1:56253691-56253710 | None:intergenic | 45.0% | |
| AACGTCACAGTCAGCATTGT+TGG | - | chr5_1:56253923-56253942 | None:intergenic | 45.0% | |
| AGGATCAAGACCAAAAGGAG+GGG | + | chr5_1:56253981-56254000 | Msa0738500:CDS | 45.0% | |
| CGTTGTCATGTTCCAGATTG+TGG | + | chr5_1:56254027-56254046 | Msa0738500:CDS | 45.0% | |
| TGTCATGTTCCAGATTGTGG+TGG | + | chr5_1:56254030-56254049 | Msa0738500:CDS | 45.0% | |
| !!! | ATTTTTATTTTTAAGAAAAT+AGG | + | chr5_1:56251618-56251637 | Msa0738500:intron | 5.0% |
| CAGATGACCGAACAAGATGG+AGG | - | chr5_1:56251320-56251339 | None:intergenic | 50.0% | |
| !! | GATGGGTGGGTTCCTTTTGA+AGG | + | chr5_1:56251729-56251748 | Msa0738500:CDS | 50.0% |
| !! | CTCACAGTTTGGTTTGGGTG+TGG | + | chr5_1:56253048-56253067 | Msa0738500:CDS | 50.0% |
| GCAGCAATTGAAGCTGCCAA+TGG | + | chr5_1:56253487-56253506 | Msa0738500:CDS | 50.0% | |
| AACGAGAACAGGTTGCCACA+AGG | + | chr5_1:56253818-56253837 | Msa0738500:CDS | 50.0% | |
| ACGAGAACAGGTTGCCACAA+GGG | + | chr5_1:56253819-56253838 | Msa0738500:CDS | 50.0% | |
| ATGACAACGACGAGGCTTCT+TGG | - | chr5_1:56254016-56254035 | None:intergenic | 50.0% | |
| ! | TCTGGAACATGACAACGACG+AGG | - | chr5_1:56254024-56254043 | None:intergenic | 50.0% |
| ! | GCAGCTTCAACCCCTCCTTT+TGG | - | chr5_1:56253994-56254013 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 56251293 | 56254518 | 56251293 | ID=Msa0738500;Name=Msa0738500 |
| chr5_1 | mRNA | 56251293 | 56254518 | 56251293 | ID=Msa0738500-mRNA-1;Parent=Msa0738500;Name=Msa0738500-mRNA-1;_AED=0.01;_eAED=0.01;_QI=154|1|1|1|0.66|0.5|4|387|764 |
| chr5_1 | exon | 56251293 | 56251417 | 56251293 | ID=Msa0738500-mRNA-1:exon:15913;Parent=Msa0738500-mRNA-1 |
| chr5_1 | exon | 56251640 | 56252700 | 56251640 | ID=Msa0738500-mRNA-1:exon:15914;Parent=Msa0738500-mRNA-1 |
| chr5_1 | exon | 56252794 | 56253237 | 56252794 | ID=Msa0738500-mRNA-1:exon:15915;Parent=Msa0738500-mRNA-1 |
| chr5_1 | exon | 56253313 | 56254518 | 56253313 | ID=Msa0738500-mRNA-1:exon:15916;Parent=Msa0738500-mRNA-1 |
| chr5_1 | five_prime_UTR | 56251293 | 56251417 | 56251293 | ID=Msa0738500-mRNA-1:five_prime_utr;Parent=Msa0738500-mRNA-1 |
| chr5_1 | five_prime_UTR | 56251640 | 56251668 | 56251640 | ID=Msa0738500-mRNA-1:five_prime_utr;Parent=Msa0738500-mRNA-1 |
| chr5_1 | CDS | 56251669 | 56252700 | 56251669 | ID=Msa0738500-mRNA-1:cds;Parent=Msa0738500-mRNA-1 |
| chr5_1 | CDS | 56252794 | 56253237 | 56252794 | ID=Msa0738500-mRNA-1:cds;Parent=Msa0738500-mRNA-1 |
| chr5_1 | CDS | 56253313 | 56254131 | 56253313 | ID=Msa0738500-mRNA-1:cds;Parent=Msa0738500-mRNA-1 |
| chr5_1 | three_prime_UTR | 56254132 | 56254518 | 56254132 | ID=Msa0738500-mRNA-1:three_prime_utr;Parent=Msa0738500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
