Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002670 | sp|Q9LKR4|FRS10_ARATH | 44.781 | 297 | 145 | 3 | 31 | 317 | 27 | 314 | 9.21e-77 | 260 |
| Msa0002670 | sp|Q9LKR4|FRS10_ARATH | 39.674 | 184 | 110 | 1 | 318 | 500 | 491 | 674 | 1.06e-34 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0002670 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002670 | Msa0002720 | 0.844282 | 8.326911e-59 | -8.615850e-47 |
| Msa0002670 | Msa0028700 | 0.882957 | 6.735045e-71 | -8.615850e-47 |
| Msa0002670 | Msa0032330 | 0.834247 | 3.347676e-56 | -8.615850e-47 |
| Msa0002670 | Msa0317290 | 0.805006 | 1.643626e-49 | -8.615850e-47 |
| Msa0002670 | Msa0516750 | 0.821284 | 4.382319e-53 | -8.615850e-47 |
| Msa0002670 | Msa0738500 | 0.833561 | 4.967814e-56 | -8.615850e-47 |
| Msa0002670 | Msa0980090 | 0.855072 | 8.062665e-62 | -8.615850e-47 |
| Msa0002670 | Msa1085740 | 0.806826 | 6.812171e-50 | -8.615850e-47 |
| Msa0002670 | Msa1156020 | 0.828041 | 1.120729e-54 | -8.615850e-47 |
| Msa0002670 | Msa1244250 | 0.805385 | 1.369314e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002670 | MtrunA17_Chr5g0431001 | 87.697 | 317 | 39 | 0 | 1 | 317 | 1 | 317 | 0.0 | 579 |
| Msa0002670 | MtrunA17_Chr1g0198761 | 71.875 | 288 | 80 | 1 | 31 | 317 | 16 | 303 | 1.87e-142 | 431 |
| Msa0002670 | MtrunA17_Chr1g0198761 | 71.942 | 278 | 78 | 0 | 315 | 592 | 479 | 756 | 1.11e-139 | 424 |
| Msa0002670 | MtrunA17_Chr2g0276841 | 43.561 | 264 | 132 | 2 | 60 | 317 | 69 | 321 | 3.11e-73 | 248 |
| Msa0002670 | MtrunA17_Chr2g0276841 | 41.146 | 192 | 107 | 3 | 315 | 503 | 497 | 685 | 6.57e-40 | 155 |
| Msa0002670 | MtrunA17_Chr2g0294841 | 45.211 | 261 | 135 | 2 | 60 | 317 | 44 | 299 | 5.21e-68 | 235 |
| Msa0002670 | MtrunA17_Chr2g0294841 | 32.130 | 277 | 160 | 5 | 315 | 569 | 475 | 745 | 4.75e-39 | 153 |
| Msa0002670 | MtrunA17_Chr2g0290391 | 44.030 | 268 | 131 | 3 | 61 | 317 | 51 | 310 | 1.18e-67 | 233 |
| Msa0002670 | MtrunA17_Chr2g0290391 | 43.781 | 201 | 93 | 4 | 315 | 505 | 486 | 676 | 8.72e-38 | 149 |
| Msa0002670 | MtrunA17_Chr5g0430921 | 95.294 | 85 | 4 | 0 | 502 | 586 | 1 | 85 | 6.69e-51 | 170 |
| Msa0002670 | MtrunA17_Chr3g0081281 | 82.609 | 92 | 16 | 0 | 210 | 301 | 2 | 93 | 1.50e-46 | 158 |
| Msa0002670 | MtrunA17_Chr2g0287651 | 28.159 | 277 | 180 | 8 | 45 | 316 | 60 | 322 | 7.32e-25 | 109 |
| Msa0002670 | MtrunA17_Chr1g0203051 | 26.578 | 301 | 183 | 9 | 28 | 317 | 52 | 325 | 1.70e-22 | 102 |
| Msa0002670 | MtrunA17_Chr6g0458391 | 27.863 | 262 | 157 | 7 | 58 | 317 | 222 | 453 | 7.31e-20 | 94.0 |
| Msa0002670 | MtrunA17_Chr5g0448761 | 27.473 | 273 | 181 | 6 | 50 | 317 | 52 | 312 | 3.77e-19 | 91.7 |
| Msa0002670 | MtrunA17_Chr8g0363841 | 27.273 | 264 | 166 | 8 | 62 | 317 | 18 | 263 | 4.02e-19 | 91.3 |
| Msa0002670 | MtrunA17_Chr1g0202341 | 26.198 | 313 | 197 | 11 | 13 | 317 | 10 | 296 | 9.74e-19 | 90.1 |
| Msa0002670 | MtrunA17_Chr1g0202341 | 27.619 | 210 | 131 | 5 | 318 | 514 | 475 | 676 | 2.92e-11 | 66.6 |
| Msa0002670 | MtrunA17_Chr1g0203721 | 26.277 | 274 | 154 | 8 | 64 | 317 | 66 | 311 | 2.96e-16 | 82.8 |
| Msa0002670 | MtrunA17_Chr5g0441581 | 29.213 | 178 | 112 | 5 | 141 | 317 | 102 | 266 | 1.30e-14 | 77.0 |
| Msa0002670 | MtrunA17_Chr2g0296781 | 26.459 | 257 | 162 | 8 | 67 | 317 | 3 | 238 | 4.78e-14 | 75.5 |
| Msa0002670 | MtrunA17_Chr5g0440451 | 27.660 | 188 | 122 | 4 | 337 | 517 | 489 | 669 | 8.76e-14 | 74.7 |
| Msa0002670 | MtrunA17_Chr7g0258861 | 23.755 | 261 | 175 | 5 | 61 | 314 | 10 | 253 | 2.34e-13 | 71.2 |
| Msa0002670 | MtrunA17_Chr2g0324011 | 23.077 | 312 | 200 | 7 | 61 | 350 | 10 | 303 | 2.89e-13 | 72.8 |
| Msa0002670 | MtrunA17_Chr2g0329031 | 26.848 | 257 | 156 | 9 | 67 | 317 | 20 | 250 | 2.16e-12 | 70.1 |
| Msa0002670 | MtrunA17_Chr1g0207551 | 26.437 | 261 | 171 | 7 | 61 | 317 | 34 | 277 | 2.44e-12 | 70.1 |
| Msa0002670 | MtrunA17_Chr6g0477261 | 35.156 | 128 | 75 | 3 | 194 | 317 | 4 | 127 | 2.73e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002670 | AT5G28530.3 | 44.781 | 297 | 145 | 3 | 31 | 317 | 27 | 314 | 8.20e-78 | 260 |
| Msa0002670 | AT5G28530.3 | 43.293 | 164 | 92 | 1 | 338 | 500 | 507 | 670 | 2.65e-35 | 141 |
| Msa0002670 | AT5G28530.2 | 44.781 | 297 | 145 | 3 | 31 | 317 | 27 | 314 | 8.20e-78 | 260 |
| Msa0002670 | AT5G28530.2 | 43.293 | 164 | 92 | 1 | 338 | 500 | 507 | 670 | 2.65e-35 | 141 |
| Msa0002670 | AT5G28530.1 | 44.781 | 297 | 145 | 3 | 31 | 317 | 27 | 314 | 9.37e-78 | 260 |
| Msa0002670 | AT5G28530.1 | 39.674 | 184 | 110 | 1 | 318 | 500 | 491 | 674 | 1.08e-35 | 142 |
| Msa0002670 | AT1G10240.2 | 44.186 | 301 | 143 | 6 | 30 | 317 | 11 | 299 | 2.62e-73 | 248 |
| Msa0002670 | AT1G10240.2 | 39.806 | 206 | 122 | 2 | 315 | 519 | 475 | 679 | 3.16e-41 | 159 |
| Msa0002670 | AT1G10240.1 | 44.186 | 301 | 143 | 6 | 30 | 317 | 11 | 299 | 2.62e-73 | 248 |
| Msa0002670 | AT1G10240.1 | 39.806 | 206 | 122 | 2 | 315 | 519 | 475 | 679 | 3.16e-41 | 159 |
| Msa0002670 | AT5G28530.5 | 40.755 | 265 | 140 | 4 | 31 | 287 | 27 | 282 | 4.27e-54 | 194 |
| Msa0002670 | AT5G28530.5 | 43.293 | 164 | 92 | 1 | 338 | 500 | 444 | 607 | 2.52e-35 | 141 |
| Msa0002670 | AT5G28530.4 | 40.755 | 265 | 140 | 4 | 31 | 287 | 27 | 282 | 5.67e-54 | 194 |
| Msa0002670 | AT5G28530.4 | 39.674 | 184 | 110 | 1 | 318 | 500 | 428 | 611 | 1.32e-35 | 142 |
| Msa0002670 | AT4G38180.1 | 27.799 | 259 | 175 | 4 | 61 | 317 | 73 | 321 | 2.76e-20 | 95.9 |
| Msa0002670 | AT4G15090.1 | 27.481 | 262 | 170 | 7 | 61 | 317 | 51 | 297 | 4.66e-17 | 85.5 |
| Msa0002670 | AT4G15090.5 | 27.481 | 262 | 170 | 7 | 61 | 317 | 51 | 297 | 4.66e-17 | 85.5 |
| Msa0002670 | AT4G15090.3 | 27.481 | 262 | 170 | 7 | 61 | 317 | 51 | 297 | 4.66e-17 | 85.5 |
| Msa0002670 | AT4G15090.2 | 27.481 | 262 | 170 | 7 | 61 | 317 | 51 | 297 | 4.66e-17 | 85.5 |
| Msa0002670 | AT4G15090.4 | 27.481 | 262 | 170 | 7 | 61 | 317 | 51 | 297 | 4.66e-17 | 85.5 |
| Msa0002670 | AT4G38170.1 | 38.462 | 117 | 68 | 2 | 337 | 449 | 284 | 400 | 9.27e-14 | 74.7 |
| Msa0002670 | AT1G76320.1 | 26.255 | 259 | 156 | 10 | 67 | 317 | 3 | 234 | 4.37e-13 | 72.8 |
| Msa0002670 | AT1G76320.4 | 26.255 | 259 | 156 | 10 | 67 | 317 | 3 | 234 | 4.37e-13 | 72.8 |
| Msa0002670 | AT3G22170.2 | 25.263 | 285 | 164 | 10 | 49 | 317 | 55 | 306 | 4.41e-13 | 72.8 |
| Msa0002670 | AT3G22170.1 | 25.263 | 285 | 164 | 10 | 49 | 317 | 55 | 306 | 4.41e-13 | 72.8 |
| Msa0002670 | AT1G76320.2 | 26.255 | 259 | 156 | 10 | 67 | 317 | 3 | 234 | 4.56e-13 | 72.8 |
| Msa0002670 | AT1G76320.3 | 26.255 | 259 | 156 | 10 | 67 | 317 | 3 | 234 | 7.82e-13 | 72.0 |
| Msa0002670 | AT2G27110.2 | 28.409 | 176 | 115 | 5 | 328 | 497 | 455 | 625 | 1.05e-11 | 68.6 |
| Msa0002670 | AT2G27110.1 | 28.409 | 176 | 115 | 5 | 328 | 497 | 455 | 625 | 1.05e-11 | 68.6 |
| Msa0002670 | AT2G27110.3 | 29.545 | 176 | 113 | 6 | 328 | 497 | 310 | 480 | 1.31e-11 | 68.2 |
Find 100 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTACATGACTAGATTT+TGG | 0.131548 | 1_1:+4803795 | None:intergenic |
| CCAATTAAAACTTACTTATT+AGG | 0.177601 | 1_1:+4803396 | None:intergenic |
| TTCTCACAACCGCGAGTTAT+TGG | 0.184751 | 1_1:-4805038 | Msa0002670:CDS |
| ATGAGATGCCTCTTGGAATA+TGG | 0.191775 | 1_1:-4804616 | Msa0002670:CDS |
| ATCACATGTTCTTGAGTTTC+AGG | 0.210618 | 1_1:+4803639 | None:intergenic |
| ACAGTTTGATCAAAACTATT+TGG | 0.235348 | 1_1:+4803245 | None:intergenic |
| CTCATGTTGAAGCAACTTAA+AGG | 0.248230 | 1_1:+4804073 | None:intergenic |
| TGTTTATTTGCAAAACAAAA+TGG | 0.260407 | 1_1:-4805304 | Msa0002670:CDS |
| ATTCGTGCATATGAAGCTTT+TGG | 0.265394 | 1_1:-4804680 | Msa0002670:CDS |
| CAATATGAATTCACAATTGA+TGG | 0.266214 | 1_1:-4804746 | Msa0002670:CDS |
| AATATCATCATAAAGATAAA+AGG | 0.310779 | 1_1:-4803666 | Msa0002670:CDS |
| TCAAGAACATGTGATTGATT+TGG | 0.314506 | 1_1:-4803631 | Msa0002670:CDS |
| CATCAATTGTGAATTCATAT+TGG | 0.326055 | 1_1:+4804747 | None:intergenic |
| ACTTTCGCTATAAGACTTAC+AGG | 0.328084 | 1_1:+4804926 | None:intergenic |
| GCAGCTTCAACCCCTCCTTT+TGG | 0.339248 | 1_1:+4803525 | None:intergenic |
| ATTCAATCATATAGTGGTAT+TGG | 0.341059 | 1_1:-4804836 | Msa0002670:CDS |
| CAAATTGGAGCATATTGTTT+GGG | 0.347369 | 1_1:-4804717 | Msa0002670:CDS |
| GAGCATATTGTTTGGGCATT+TGG | 0.348974 | 1_1:-4804710 | Msa0002670:CDS |
| ACAAATTGGAGCATATTGTT+TGG | 0.352856 | 1_1:-4804718 | Msa0002670:CDS |
| AATTGATGGAAGTAACAAAT+TGG | 0.358783 | 1_1:-4804732 | Msa0002670:CDS |
| ATGACAACGACGAGGCTTCT+TGG | 0.366012 | 1_1:+4803503 | None:intergenic |
| TCAGTCTCTAATTCGATGTT+TGG | 0.372448 | 1_1:-4803745 | Msa0002670:CDS |
| AACGTCACAGTCAGCATTGT+TGG | 0.377007 | 1_1:+4803596 | None:intergenic |
| GTAGTTACTAAGAGAAGAAT+TGG | 0.389295 | 1_1:-4805097 | Msa0002670:CDS |
| CCTCAAGTCACTAACATTGA+TGG | 0.399508 | 1_1:-4805493 | Msa0002670:CDS |
| AGTGAATTAGACAGATGAAT+TGG | 0.402311 | 1_1:-4803190 | Msa0002670:three_prime_UTR |
| TCAAATATTTGCCCTTCAAA+AGG | 0.411166 | 1_1:+4805463 | None:intergenic |
| ATACTAGTAATTACACAGTT+TGG | 0.415911 | 1_1:+4803060 | None:intergenic |
| ATCCATCGGGTGTTTATAAG+AGG | 0.417116 | 1_1:-4805225 | Msa0002670:CDS |
| GATACCACATATAGAATAAA+CGG | 0.421176 | 1_1:-4804641 | Msa0002670:CDS |
| GTCATCTTGAAATAGTGAAT+TGG | 0.425948 | 1_1:-4803281 | Msa0002670:three_prime_UTR |
| TGAGATGCCTCTTGGAATAT+GGG | 0.433904 | 1_1:-4804615 | Msa0002670:intron |
| TATACGACCACCATCAACTT+TGG | 0.437731 | 1_1:+4803983 | None:intergenic |
| GACGAGGCATGTTCTTCAAT+AGG | 0.443666 | 1_1:+4804113 | None:intergenic |
| TGATTAGTTCCACCACAATC+TGG | 0.446933 | 1_1:+4803477 | None:intergenic |
| AACGGTTATGAGATGCCTCT+TGG | 0.448749 | 1_1:-4804623 | Msa0002670:CDS |
| AAAGACAAGTGAACGAGAAC+AGG | 0.453486 | 1_1:-4803709 | Msa0002670:CDS |
| CATGTAATAAACTGCAATGA+TGG | 0.453622 | 1_1:-4803783 | Msa0002670:CDS |
| GTTTGTCATCGTGGTGGTAT+TGG | 0.458689 | 1_1:-4805196 | Msa0002670:CDS |
| ATGCGATCTTGATCAACAAT+TGG | 0.465554 | 1_1:+4804974 | None:intergenic |
| TATAAGACTTACAGGGCAAC+CGG | 0.483233 | 1_1:+4804934 | None:intergenic |
| AAAACAAAAGGTCGGCCAAA+AGG | 0.495104 | 1_1:-4803555 | Msa0002670:CDS |
| TTGATAGGATCATGAAGGGT+TGG | 0.498564 | 1_1:-4803309 | Msa0002670:intron |
| TGAAGCAACTTAAAGGCATA+AGG | 0.499495 | 1_1:+4804080 | None:intergenic |
| CGTTGTCATGTTCCAGATTG+TGG | 0.504732 | 1_1:-4803489 | Msa0002670:CDS |
| TACTTATTAGGAGATTGATA+AGG | 0.505158 | 1_1:+4803408 | None:intergenic |
| ATAACCGTTTATTCTATATG+TGG | 0.505465 | 1_1:+4804637 | None:intergenic |
| AATTGTGAATTCATATTGGA+AGG | 0.507660 | 1_1:+4804751 | None:intergenic |
| CCAAAAGGATCAAGACCAAA+AGG | 0.514192 | 1_1:-4803540 | Msa0002670:CDS |
| CTTTCTCGTCTCCATCGAAA+AGG | 0.515070 | 1_1:+4803828 | None:intergenic |
| GTCAAAATTAGAAATCAAGC+TGG | 0.517568 | 1_1:-4804191 | Msa0002670:CDS |
| TGGTAATAATAAACTATAGC+AGG | 0.519610 | 1_1:+4803080 | None:intergenic |
| ATTGGAATGTTACGATAAGC+AGG | 0.522557 | 1_1:+4804992 | None:intergenic |
| TAGTTTGATCAAAGCAGCTT+CGG | 0.523562 | 1_1:+4803167 | None:intergenic |
| ATGTTATTGACTTGAGGCAA+GGG | 0.525418 | 1_1:+4805391 | None:intergenic |
| TAAGCAATGATGCTAGTGAT+TGG | 0.525487 | 1_1:-4805522 | Msa0002670:CDS |
| ACCACGCAAAACTGTTGAAG+TGG | 0.526679 | 1_1:-4805170 | Msa0002670:CDS |
| ATACTATTATTGTCTAAAGC+CGG | 0.531055 | 1_1:-4804953 | Msa0002670:CDS |
| CAACATCATACCAAAGTTGA+TGG | 0.538288 | 1_1:-4803993 | Msa0002670:CDS |
| TTGCACAACATAAGAGCCAT+TGG | 0.551354 | 1_1:+4804013 | None:intergenic |
| CTCAAGTCACTAACATTGAT+GGG | 0.551567 | 1_1:-4805492 | Msa0002670:CDS |
| TAAGAGAAGAATTGGCATTG+AGG | 0.553953 | 1_1:-4805089 | Msa0002670:CDS |
| CGAGTTATTGGATGACAAAG+AGG | 0.556388 | 1_1:-4805026 | Msa0002670:CDS |
| GTGCTTTGATAGGATCATGA+AGG | 0.556862 | 1_1:-4803314 | Msa0002670:intron |
| CAAGTCAATAACATTGATGA+GGG | 0.558520 | 1_1:-4805382 | Msa0002670:CDS |
| ACATGTGATTGATTTGGAAG+AGG | 0.565753 | 1_1:-4803625 | Msa0002670:CDS |
| GGAAAATGTGTTGTAATCTG+AGG | 0.568974 | 1_1:+4804134 | None:intergenic |
| ATGTGATTGTAGTGCAAAGA+TGG | 0.570079 | 1_1:-4805119 | Msa0002670:CDS |
| ATGTTAGTGACTTGAGGCAA+GGG | 0.572230 | 1_1:+4805499 | None:intergenic |
| GTGTCTGAAGAGAATCCATC+GGG | 0.572540 | 1_1:-4805238 | Msa0002670:CDS |
| TCATCAATGTTATTGACTTG+AGG | 0.573525 | 1_1:+4805385 | None:intergenic |
| TAGAAATCAAGCTGGAGAAG+AGG | 0.577533 | 1_1:-4804183 | Msa0002670:CDS |
| AATGTTATTGACTTGAGGCA+AGG | 0.580693 | 1_1:+4805390 | None:intergenic |
| AGTCACTAACATTGATGGGT+GGG | 0.589348 | 1_1:-4805488 | Msa0002670:CDS |
| AATGTTAGTGACTTGAGGCA+AGG | 0.597462 | 1_1:+4805498 | None:intergenic |
| AGGGAATTTGTTTGTCATCG+TGG | 0.598966 | 1_1:-4805205 | Msa0002670:CDS |
| TGTGTCTGAAGAGAATCCAT+CGG | 0.599444 | 1_1:-4805239 | Msa0002670:CDS |
| TCCCTCTTATAAACACCCGA+TGG | 0.599604 | 1_1:+4805223 | None:intergenic |
| GCAGCAATTGAAGCTGCCAA+TGG | 0.600590 | 1_1:-4804029 | Msa0002670:CDS |
| TCAAGTCAATAACATTGATG+AGG | 0.603097 | 1_1:-4805383 | Msa0002670:CDS |
| CTGTTGAAGTGGAAAATCAA+AGG | 0.606328 | 1_1:-4805159 | Msa0002670:CDS |
| TTAGAGAAAAGAACAGACAC+AGG | 0.606382 | 1_1:-4804896 | Msa0002670:CDS |
| CTTTCGCTATAAGACTTACA+GGG | 0.610521 | 1_1:+4804927 | None:intergenic |
| AAGGATCAAGACCAAAAGGA+GGG | 0.611165 | 1_1:-4803536 | Msa0002670:CDS |
| CCATCAATGTTAGTGACTTG+AGG | 0.613145 | 1_1:+4805493 | None:intergenic |
| GAATTTGTTTGTCATCGTGG+TGG | 0.618777 | 1_1:-4805202 | Msa0002670:CDS |
| AAGTCACTAACATTGATGGG+TGG | 0.624878 | 1_1:-4805489 | Msa0002670:CDS |
| TCCATCGGGTGTTTATAAGA+GGG | 0.625908 | 1_1:-4805224 | Msa0002670:CDS |
| CTTTGTCATCCAATAACTCG+CGG | 0.626544 | 1_1:+4805029 | None:intergenic |
| TGTCATGTTCCAGATTGTGG+TGG | 0.637809 | 1_1:-4803486 | Msa0002670:CDS |
| AAAGGATCAAGACCAAAAGG+AGG | 0.655085 | 1_1:-4803537 | Msa0002670:CDS |
| TAGAGACTGAAATTTAGCAG+AGG | 0.662901 | 1_1:+4803758 | None:intergenic |
| ACACCAACCCATATTCCAAG+AGG | 0.676376 | 1_1:+4804608 | None:intergenic |
| TGCTTTGATAGGATCATGAA+GGG | 0.676443 | 1_1:-4803313 | Msa0002670:intron |
| AAGTTTGAAAGATCGAGATG+AGG | 0.682349 | 1_1:-4804774 | Msa0002670:CDS |
| CATCATACCAAAGTTGATGG+TGG | 0.683172 | 1_1:-4803990 | Msa0002670:CDS |
| AGGATCAAGACCAAAAGGAG+GGG | 0.696841 | 1_1:-4803535 | Msa0002670:CDS |
| AAGTCAATAACATTGATGAG+GGG | 0.714581 | 1_1:-4805381 | Msa0002670:CDS |
| ATAAGGTGTGAGTATAGACG+AGG | 0.720548 | 1_1:+4804097 | None:intergenic |
| TCTGGAACATGACAACGACG+AGG | 0.797744 | 1_1:+4803495 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATTAACTGTATTTTTA+TGG | - | chr1_1:4805240-4805259 | Msa0002670:CDS | 10.0% |
| !!! | AATTTTATTCAATCATATAG+TGG | - | chr1_1:4803734-4803753 | Msa0002670:CDS | 15.0% |
| !! | AATATCATCATAAAGATAAA+AGG | - | chr1_1:4804910-4804929 | Msa0002670:CDS | 15.0% |
| !! | TGTTTATTTGCAAAACAAAA+TGG | - | chr1_1:4803272-4803291 | Msa0002670:three_prime_UTR | 20.0% |
| !!! | AACAAAATGGATTTTCTATT+AGG | - | chr1_1:4803285-4803304 | Msa0002670:exon | 20.0% |
| !!! | CTAATATCTTTTTCTAAGAA+TGG | + | chr1_1:4803713-4803732 | None:intergenic | 20.0% |
| !!! | CATGGAAATTCATTTTTTTT+TGG | - | chr1_1:4803998-4804017 | Msa0002670:CDS | 20.0% |
| !!! | TGATTGTTATATTTTTGTGT+AGG | - | chr1_1:4804351-4804370 | Msa0002670:intron | 20.0% |
| !!! | TTATTACATGACTAGATTTT+GGG | + | chr1_1:4804783-4804802 | None:intergenic | 20.0% |
| !!! | TTTATTACATGACTAGATTT+TGG | + | chr1_1:4804784-4804803 | None:intergenic | 20.0% |
| !! | CCAATTAAAACTTACTTATT+AGG | + | chr1_1:4805183-4805202 | None:intergenic | 20.0% |
| !!! | CCTAATAAGTAAGTTTTAAT+TGG | - | chr1_1:4805180-4805199 | Msa0002670:CDS | 20.0% |
| !!! | TATGTAATCAGTATATTTTG+TGG | - | chr1_1:4805430-4805449 | Msa0002670:CDS | 20.0% |
| !! | TCAAATATTTTCCCTTCAAA+AGG | + | chr1_1:4803224-4803243 | None:intergenic | 25.0% |
| !! | ATACTATTATTGTCTAAAGC+CGG | - | chr1_1:4803623-4803642 | Msa0002670:CDS | 25.0% |
| ! | ATTCAATCATATAGTGGTAT+TGG | - | chr1_1:4803740-4803759 | Msa0002670:CDS | 25.0% |
| ! | AATTGTGAATTCATATTGGA+AGG | + | chr1_1:4803828-4803847 | None:intergenic | 25.0% |
| ! | CATCAATTGTGAATTCATAT+TGG | + | chr1_1:4803832-4803851 | None:intergenic | 25.0% |
| ! | CAATATGAATTCACAATTGA+TGG | - | chr1_1:4803830-4803849 | Msa0002670:CDS | 25.0% |
| ! | AATTGATGGAAGTAACAAAT+TGG | - | chr1_1:4803844-4803863 | Msa0002670:CDS | 25.0% |
| ! | GATACCACATATAGAATAAA+CGG | - | chr1_1:4803935-4803954 | Msa0002670:CDS | 25.0% |
| ! | ATAACCGTTTATTCTATATG+TGG | + | chr1_1:4803942-4803961 | None:intergenic | 25.0% |
| !!! | AAAATCTGTCAAACTTGTTT+TGG | + | chr1_1:4804270-4804289 | None:intergenic | 25.0% |
| !!! | TGTTATATTTTTGTGTAGGT+TGG | - | chr1_1:4804355-4804374 | Msa0002670:intron | 25.0% |
| !! | TGTAAAGAGTTTCAATTTTC+AGG | - | chr1_1:4804655-4804674 | Msa0002670:CDS | 25.0% |
| ! | TTGTTTCAAAAACAAAAGGT+CGG | - | chr1_1:4805013-4805032 | Msa0002670:CDS | 25.0% |
| ! | TCCAAACAAAAAGAGAAAAA+TGG | - | chr1_1:4805137-4805156 | Msa0002670:CDS | 25.0% |
| !!! | TCCATTTTTCTCTTTTTGTT+TGG | + | chr1_1:4805141-4805160 | None:intergenic | 25.0% |
| ! | TACTTATTAGGAGATTGATA+AGG | + | chr1_1:4805171-4805190 | None:intergenic | 25.0% |
| !!! | TATTTTTATGGTGCTTTGAT+AGG | - | chr1_1:4805252-4805271 | Msa0002670:CDS | 25.0% |
| ! | ACAGTTTGATCAAAACTATT+TGG | + | chr1_1:4805334-4805353 | None:intergenic | 25.0% |
| !! | TGTGTAATTAGTGAATTTTG+TGG | - | chr1_1:4805351-4805370 | Msa0002670:CDS | 25.0% |
| ! | TGGTAATAATAAACTATAGC+AGG | + | chr1_1:4805499-4805518 | None:intergenic | 25.0% |
| ! | ATACTAGTAATTACACAGTT+TGG | + | chr1_1:4805519-4805538 | None:intergenic | 25.0% |
| TCAAATATTTGCCCTTCAAA+AGG | + | chr1_1:4803116-4803135 | None:intergenic | 30.0% | |
| !! | TCATCAATGTTATTGACTTG+AGG | + | chr1_1:4803194-4803213 | None:intergenic | 30.0% |
| TCAAGTCAATAACATTGATG+AGG | - | chr1_1:4803193-4803212 | Msa0002670:three_prime_UTR | 30.0% | |
| CAAGTCAATAACATTGATGA+GGG | - | chr1_1:4803194-4803213 | Msa0002670:three_prime_UTR | 30.0% | |
| AAGTCAATAACATTGATGAG+GGG | - | chr1_1:4803195-4803214 | Msa0002670:three_prime_UTR | 30.0% | |
| GTAGTTACTAAGAGAAGAAT+TGG | - | chr1_1:4803479-4803498 | Msa0002670:CDS | 30.0% | |
| ! | AATTGGCATTGAGGAAAAAT+GGG | - | chr1_1:4803496-4803515 | Msa0002670:CDS | 30.0% |
| ACAAATTGGAGCATATTGTT+TGG | - | chr1_1:4803858-4803877 | Msa0002670:CDS | 30.0% | |
| CAAATTGGAGCATATTGTTT+GGG | - | chr1_1:4803859-4803878 | Msa0002670:CDS | 30.0% | |
| ! | TCTTTACCCATCGTAAATTT+TGG | - | chr1_1:4804150-4804169 | Msa0002670:CDS | 30.0% |
| ! | CTTTACCCATCGTAAATTTT+GGG | - | chr1_1:4804151-4804170 | Msa0002670:CDS | 30.0% |
| AAAGTCCTTCAAATAAGCTA+AGG | + | chr1_1:4804177-4804196 | None:intergenic | 30.0% | |
| !!! | TTGAAGGACTTTTTTTTTGC+TGG | - | chr1_1:4804185-4804204 | Msa0002670:CDS | 30.0% |
| GTCAAAATTAGAAATCAAGC+TGG | - | chr1_1:4804385-4804404 | Msa0002670:intron | 30.0% | |
| !! | CGAAAAGGAAGATATTTTGA+TGG | + | chr1_1:4804736-4804755 | None:intergenic | 30.0% |
| ! | CAAAATATCTTCCTTTTCGA+TGG | - | chr1_1:4804737-4804756 | Msa0002670:CDS | 30.0% |
| CATGTAATAAACTGCAATGA+TGG | - | chr1_1:4804793-4804812 | Msa0002670:CDS | 30.0% | |
| ! | GATATTTTCTAACTCTCTTG+TGG | + | chr1_1:4804896-4804915 | None:intergenic | 30.0% |
| TCAAGAACATGTGATTGATT+TGG | - | chr1_1:4804945-4804964 | Msa0002670:CDS | 30.0% | |
| !!! | CCTTTTGTTTTTGAAACAAC+AGG | + | chr1_1:4805012-4805031 | None:intergenic | 30.0% |
| !! | CCTGTTGTTTCAAAAACAAA+AGG | - | chr1_1:4805009-4805028 | Msa0002670:CDS | 30.0% |
| GTCATCTTGAAATAGTGAAT+TGG | - | chr1_1:4805295-4805314 | Msa0002670:CDS | 30.0% | |
| AGTGAATTAGACAGATGAAT+TGG | - | chr1_1:4805386-4805405 | Msa0002670:CDS | 30.0% | |
| TAAGCAATGATGCTAGTGAT+TGG | - | chr1_1:4803054-4803073 | Msa0002670:three_prime_UTR | 35.0% | |
| CTCAAGTCACTAACATTGAT+GGG | - | chr1_1:4803084-4803103 | Msa0002670:three_prime_UTR | 35.0% | |
| !! | ATGTTATTGACTTGAGGCAA+GGG | + | chr1_1:4803188-4803207 | None:intergenic | 35.0% |
| !! | AATGTTATTGACTTGAGGCA+AGG | + | chr1_1:4803189-4803208 | None:intergenic | 35.0% |
| CTGTTGAAGTGGAAAATCAA+AGG | - | chr1_1:4803417-4803436 | Msa0002670:CDS | 35.0% | |
| ATGTGATTGTAGTGCAAAGA+TGG | - | chr1_1:4803457-4803476 | Msa0002670:CDS | 35.0% | |
| TAAGAGAAGAATTGGCATTG+AGG | - | chr1_1:4803487-4803506 | Msa0002670:CDS | 35.0% | |
| ! | GAATTGGCATTGAGGAAAAA+TGG | - | chr1_1:4803495-4803514 | Msa0002670:CDS | 35.0% |
| ATTGGAATGTTACGATAAGC+AGG | + | chr1_1:4803587-4803606 | None:intergenic | 35.0% | |
| ATGCGATCTTGATCAACAAT+TGG | + | chr1_1:4803605-4803624 | None:intergenic | 35.0% | |
| CTTTCGCTATAAGACTTACA+GGG | + | chr1_1:4803652-4803671 | None:intergenic | 35.0% | |
| ACTTTCGCTATAAGACTTAC+AGG | + | chr1_1:4803653-4803672 | None:intergenic | 35.0% | |
| TTAGAGAAAAGAACAGACAC+AGG | - | chr1_1:4803680-4803699 | Msa0002670:CDS | 35.0% | |
| AAGTTTGAAAGATCGAGATG+AGG | - | chr1_1:4803802-4803821 | Msa0002670:CDS | 35.0% | |
| ! | ATTCGTGCATATGAAGCTTT+TGG | - | chr1_1:4803896-4803915 | Msa0002670:CDS | 35.0% |
| CGAAATGAGAAGATTTCTTC+AGG | - | chr1_1:4804034-4804053 | Msa0002670:CDS | 35.0% | |
| ! | CAGATGATTTTGAACGAGAA+TGG | - | chr1_1:4804075-4804094 | Msa0002670:CDS | 35.0% |
| TGAACGAGAATGGAAAGTAA+TGG | - | chr1_1:4804085-4804104 | Msa0002670:CDS | 35.0% | |
| AAAGTAATGGTCTCACAGTT+TGG | - | chr1_1:4804098-4804117 | Msa0002670:CDS | 35.0% | |
| TAAGGCCCAAAATTTACGAT+GGG | + | chr1_1:4804159-4804178 | None:intergenic | 35.0% | |
| GGAAAATGTGTTGTAATCTG+AGG | + | chr1_1:4804445-4804464 | None:intergenic | 35.0% | |
| ! | TGAAGCAACTTAAAGGCATA+AGG | + | chr1_1:4804499-4804518 | None:intergenic | 35.0% |
| CTCATGTTGAAGCAACTTAA+AGG | + | chr1_1:4804506-4804525 | None:intergenic | 35.0% | |
| CAACATCATACCAAAGTTGA+TGG | - | chr1_1:4804583-4804602 | Msa0002670:intron | 35.0% | |
| TAGAGACTGAAATTTAGCAG+AGG | + | chr1_1:4804821-4804840 | None:intergenic | 35.0% | |
| TCAGTCTCTAATTCGATGTT+TGG | - | chr1_1:4804831-4804850 | Msa0002670:CDS | 35.0% | |
| ATCACATGTTCTTGAGTTTC+AGG | + | chr1_1:4804940-4804959 | None:intergenic | 35.0% | |
| !! | ACATGTGATTGATTTGGAAG+AGG | - | chr1_1:4804951-4804970 | Msa0002670:CDS | 35.0% |
| TGCTTTGATAGGATCATGAA+GGG | - | chr1_1:4805263-4805282 | Msa0002670:CDS | 35.0% | |
| TAGTTTGATCAAAGCAGCTT+CGG | + | chr1_1:4805412-4805431 | None:intergenic | 35.0% | |
| ATGTTAGTGACTTGAGGCAA+GGG | + | chr1_1:4803080-4803099 | None:intergenic | 40.0% | |
| AATGTTAGTGACTTGAGGCA+AGG | + | chr1_1:4803081-4803100 | None:intergenic | 40.0% | |
| CCATCAATGTTAGTGACTTG+AGG | + | chr1_1:4803086-4803105 | None:intergenic | 40.0% | |
| CCTCAAGTCACTAACATTGA+TGG | - | chr1_1:4803083-4803102 | Msa0002670:three_prime_UTR | 40.0% | |
| AAGTCACTAACATTGATGGG+TGG | - | chr1_1:4803087-4803106 | Msa0002670:three_prime_UTR | 40.0% | |
| ! | AGTCACTAACATTGATGGGT+GGG | - | chr1_1:4803088-4803107 | Msa0002670:three_prime_UTR | 40.0% |
| ! | ATGAGGGGATTCCTTTTGAA+GGG | - | chr1_1:4803210-4803229 | Msa0002670:three_prime_UTR | 40.0% |
| TGTGTCTGAAGAGAATCCAT+CGG | - | chr1_1:4803337-4803356 | Msa0002670:intron | 40.0% | |
| ATCCATCGGGTGTTTATAAG+AGG | - | chr1_1:4803351-4803370 | Msa0002670:intron | 40.0% | |
| TCCATCGGGTGTTTATAAGA+GGG | - | chr1_1:4803352-4803371 | Msa0002670:intron | 40.0% | |
| ! | AGGGAATTTGTTTGTCATCG+TGG | - | chr1_1:4803371-4803390 | Msa0002670:intron | 40.0% |
| ! | GAATTTGTTTGTCATCGTGG+TGG | - | chr1_1:4803374-4803393 | Msa0002670:intron | 40.0% |
| CTTTGTCATCCAATAACTCG+CGG | + | chr1_1:4803550-4803569 | None:intergenic | 40.0% | |
| CGAGTTATTGGATGACAAAG+AGG | - | chr1_1:4803550-4803569 | Msa0002670:CDS | 40.0% | |
| TATAAGACTTACAGGGCAAC+CGG | + | chr1_1:4803645-4803664 | None:intergenic | 40.0% | |
| GAGCATATTGTTTGGGCATT+TGG | - | chr1_1:4803866-4803885 | Msa0002670:CDS | 40.0% | |
| ATGAGATGCCTCTTGGAATA+TGG | - | chr1_1:4803960-4803979 | Msa0002670:CDS | 40.0% | |
| TGAGATGCCTCTTGGAATAT+GGG | - | chr1_1:4803961-4803980 | Msa0002670:CDS | 40.0% | |
| !! | TGGGTTGGTGTTGATAATCA+TGG | - | chr1_1:4803980-4803999 | Msa0002670:CDS | 40.0% |
| AATGGTCTCACAGTTTGGTT+TGG | - | chr1_1:4804103-4804122 | Msa0002670:CDS | 40.0% | |
| ! | ATGGTCTCACAGTTTGGTTT+GGG | - | chr1_1:4804104-4804123 | Msa0002670:CDS | 40.0% |
| CTAAGGCCCAAAATTTACGA+TGG | + | chr1_1:4804160-4804179 | None:intergenic | 40.0% | |
| TTGGGCCTTAGCTTATTTGA+AGG | - | chr1_1:4804169-4804188 | Msa0002670:CDS | 40.0% | |
| TTTGCTGGAATGACAACAAC+AGG | - | chr1_1:4804200-4804219 | Msa0002670:CDS | 40.0% | |
| TAGAAATCAAGCTGGAGAAG+AGG | - | chr1_1:4804393-4804412 | Msa0002670:intron | 40.0% | |
| ATAAGGTGTGAGTATAGACG+AGG | + | chr1_1:4804482-4804501 | None:intergenic | 40.0% | |
| TTGCACAACATAAGAGCCAT+TGG | + | chr1_1:4804566-4804585 | None:intergenic | 40.0% | |
| !! | CATCATACCAAAGTTGATGG+TGG | - | chr1_1:4804586-4804605 | Msa0002670:intron | 40.0% |
| TATACGACCACCATCAACTT+TGG | + | chr1_1:4804596-4804615 | None:intergenic | 40.0% | |
| AAAGACAAGTGAACGAGAAC+AGG | - | chr1_1:4804867-4804886 | Msa0002670:CDS | 40.0% | |
| AAAACAAAAGGTCGGCCAAA+AGG | - | chr1_1:4805021-4805040 | Msa0002670:CDS | 40.0% | |
| !!! | CCTTTTGGTCTTGATCCTTT+TGG | + | chr1_1:4805039-4805058 | None:intergenic | 40.0% |
| CCAAAAGGATCAAGACCAAA+AGG | - | chr1_1:4805036-4805055 | Msa0002670:CDS | 40.0% | |
| AAAGGATCAAGACCAAAAGG+AGG | - | chr1_1:4805039-4805058 | Msa0002670:CDS | 40.0% | |
| AAGGATCAAGACCAAAAGGA+GGG | - | chr1_1:4805040-4805059 | Msa0002670:CDS | 40.0% | |
| ! | TGATTAGTTCCACCACAATC+TGG | + | chr1_1:4805102-4805121 | None:intergenic | 40.0% |
| GTGCTTTGATAGGATCATGA+AGG | - | chr1_1:4805262-4805281 | Msa0002670:CDS | 40.0% | |
| TTGATAGGATCATGAAGGGT+TGG | - | chr1_1:4805267-4805286 | Msa0002670:CDS | 40.0% | |
| !! | ATGGGTGGGTTCCTTTTGAA+GGG | - | chr1_1:4803102-4803121 | Msa0002670:three_prime_UTR | 45.0% |
| ! | GATGAGGGGATTCCTTTTGA+AGG | - | chr1_1:4803209-4803228 | Msa0002670:three_prime_UTR | 45.0% |
| GTGTCTGAAGAGAATCCATC+GGG | - | chr1_1:4803338-4803357 | Msa0002670:intron | 45.0% | |
| TCCCTCTTATAAACACCCGA+TGG | + | chr1_1:4803356-4803375 | None:intergenic | 45.0% | |
| GTTTGTCATCGTGGTGGTAT+TGG | - | chr1_1:4803380-4803399 | Msa0002670:intron | 45.0% | |
| ACCACGCAAAACTGTTGAAG+TGG | - | chr1_1:4803406-4803425 | Msa0002670:intron | 45.0% | |
| ! | TCCACTTCAACAGTTTTGCG+TGG | + | chr1_1:4803410-4803429 | None:intergenic | 45.0% |
| ! | TGGCATTGAGGAAAAATGGG+TGG | - | chr1_1:4803499-4803518 | Msa0002670:CDS | 45.0% |
| TTCTCACAACCGCGAGTTAT+TGG | - | chr1_1:4803538-4803557 | Msa0002670:CDS | 45.0% | |
| AACGGTTATGAGATGCCTCT+TGG | - | chr1_1:4803953-4803972 | Msa0002670:CDS | 45.0% | |
| ATGCCTCTTGGAATATGGGT+TGG | - | chr1_1:4803965-4803984 | Msa0002670:CDS | 45.0% | |
| ACACCAACCCATATTCCAAG+AGG | + | chr1_1:4803971-4803990 | None:intergenic | 45.0% | |
| GACGAGGCATGTTCTTCAAT+AGG | + | chr1_1:4804466-4804485 | None:intergenic | 45.0% | |
| CTTTCTCGTCTCCATCGAAA+AGG | + | chr1_1:4804751-4804770 | None:intergenic | 45.0% | |
| AACGTCACAGTCAGCATTGT+TGG | + | chr1_1:4804983-4805002 | None:intergenic | 45.0% | |
| AGGATCAAGACCAAAAGGAG+GGG | - | chr1_1:4805041-4805060 | Msa0002670:CDS | 45.0% | |
| CGTTGTCATGTTCCAGATTG+TGG | - | chr1_1:4805087-4805106 | Msa0002670:CDS | 45.0% | |
| TGTCATGTTCCAGATTGTGG+TGG | - | chr1_1:4805090-4805109 | Msa0002670:CDS | 45.0% | |
| !! | GATGGGTGGGTTCCTTTTGA+AGG | - | chr1_1:4803101-4803120 | Msa0002670:three_prime_UTR | 50.0% |
| !! | CTCACAGTTTGGTTTGGGTG+TGG | - | chr1_1:4804109-4804128 | Msa0002670:CDS | 50.0% |
| GCAGCAATTGAAGCTGCCAA+TGG | - | chr1_1:4804547-4804566 | Msa0002670:intron | 50.0% | |
| ATGACAACGACGAGGCTTCT+TGG | + | chr1_1:4805076-4805095 | None:intergenic | 50.0% | |
| ! | TCTGGAACATGACAACGACG+AGG | + | chr1_1:4805084-4805103 | None:intergenic | 50.0% |
| ! | GCAGCTTCAACCCCTCCTTT+TGG | + | chr1_1:4805054-4805073 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 4803041 | 4805557 | 4803041 | ID=Msa0002670;Name=Msa0002670 |
| chr1_1 | mRNA | 4803041 | 4805557 | 4803041 | ID=Msa0002670-mRNA-1;Parent=Msa0002670;Name=Msa0002670-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.5|0.66|1|1|1|3|262|592 |
| chr1_1 | exon | 4803041 | 4803324 | 4803041 | ID=Msa0002670-mRNA-1:exon:1473;Parent=Msa0002670-mRNA-1 |
| chr1_1 | exon | 4803411 | 4804225 | 4803411 | ID=Msa0002670-mRNA-1:exon:1472;Parent=Msa0002670-mRNA-1 |
| chr1_1 | exon | 4804616 | 4805557 | 4804616 | ID=Msa0002670-mRNA-1:exon:1471;Parent=Msa0002670-mRNA-1 |
| chr1_1 | CDS | 4804616 | 4805557 | 4804616 | ID=Msa0002670-mRNA-1:cds;Parent=Msa0002670-mRNA-1 |
| chr1_1 | CDS | 4803411 | 4804225 | 4803411 | ID=Msa0002670-mRNA-1:cds;Parent=Msa0002670-mRNA-1 |
| chr1_1 | CDS | 4803303 | 4803324 | 4803303 | ID=Msa0002670-mRNA-1:cds;Parent=Msa0002670-mRNA-1 |
| chr1_1 | three_prime_UTR | 4803041 | 4803302 | 4803041 | ID=Msa0002670-mRNA-1:three_prime_utr;Parent=Msa0002670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
