AlfalfaGEDB | Msa0002670

M. sativa cultivar zhongmu-4 / Msa0002670

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0002670	sp\|Q9LKR4\|FRS10_ARATH	44.781	297	145	3	31	317	27	314	9.21e-77	260
Msa0002670	sp\|Q9LKR4\|FRS10_ARATH	39.674	184	110	1	318	500	491	674	1.06e-34	142

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
Msa0002670	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002670	Msa0002720	0.844282	8.326911e-59	-8.615850e-47
Msa0002670	Msa0028700	0.882957	6.735045e-71	-8.615850e-47
Msa0002670	Msa0032330	0.834247	3.347676e-56	-8.615850e-47
Msa0002670	Msa0317290	0.805006	1.643626e-49	-8.615850e-47
Msa0002670	Msa0516750	0.821284	4.382319e-53	-8.615850e-47
Msa0002670	Msa0738500	0.833561	4.967814e-56	-8.615850e-47
Msa0002670	Msa0980090	0.855072	8.062665e-62	-8.615850e-47
Msa0002670	Msa1085740	0.806826	6.812171e-50	-8.615850e-47
Msa0002670	Msa1156020	0.828041	1.120729e-54	-8.615850e-47
Msa0002670	Msa1244250	0.805385	1.369314e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0002670	MtrunA17_Chr5g0431001	87.697	317	39	0	1	317	1	317	0.0	579
Msa0002670	MtrunA17_Chr1g0198761	71.875	288	80	1	31	317	16	303	1.87e-142	431
Msa0002670	MtrunA17_Chr1g0198761	71.942	278	78	0	315	592	479	756	1.11e-139	424
Msa0002670	MtrunA17_Chr2g0276841	43.561	264	132	2	60	317	69	321	3.11e-73	248
Msa0002670	MtrunA17_Chr2g0276841	41.146	192	107	3	315	503	497	685	6.57e-40	155
Msa0002670	MtrunA17_Chr2g0294841	45.211	261	135	2	60	317	44	299	5.21e-68	235
Msa0002670	MtrunA17_Chr2g0294841	32.130	277	160	5	315	569	475	745	4.75e-39	153
Msa0002670	MtrunA17_Chr2g0290391	44.030	268	131	3	61	317	51	310	1.18e-67	233
Msa0002670	MtrunA17_Chr2g0290391	43.781	201	93	4	315	505	486	676	8.72e-38	149
Msa0002670	MtrunA17_Chr5g0430921	95.294	85	4	0	502	586	1	85	6.69e-51	170

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0002670	AT5G28530.3	44.781	297	145	3	31	317	27	314	8.20e-78	260
Msa0002670	AT5G28530.3	43.293	164	92	1	338	500	507	670	2.65e-35	141
Msa0002670	AT5G28530.2	44.781	297	145	3	31	317	27	314	8.20e-78	260
Msa0002670	AT5G28530.2	43.293	164	92	1	338	500	507	670	2.65e-35	141
Msa0002670	AT5G28530.1	44.781	297	145	3	31	317	27	314	9.37e-78	260
Msa0002670	AT5G28530.1	39.674	184	110	1	318	500	491	674	1.08e-35	142
Msa0002670	AT1G10240.2	44.186	301	143	6	30	317	11	299	2.62e-73	248
Msa0002670	AT1G10240.2	39.806	206	122	2	315	519	475	679	3.16e-41	159
Msa0002670	AT1G10240.1	44.186	301	143	6	30	317	11	299	2.62e-73	248
Msa0002670	AT1G10240.1	39.806	206	122	2	315	519	475	679	3.16e-41	159

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Find 100 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAAGGTCGGCCAAA+AGG	0.495104	1_1:-4803555	Msa0002670:CDS
AAAGACAAGTGAACGAGAAC+AGG	0.453486	1_1:-4803709	Msa0002670:CDS
AAAGGATCAAGACCAAAAGG+AGG	0.655085	1_1:-4803537	Msa0002670:CDS
AACGGTTATGAGATGCCTCT+TGG	0.448749	1_1:-4804623	Msa0002670:CDS
AACGTCACAGTCAGCATTGT+TGG	0.377007	1_1:+4803596	None:intergenic
AAGGATCAAGACCAAAAGGA+GGG	0.611165	1_1:-4803536	Msa0002670:CDS
AAGTCAATAACATTGATGAG+GGG	0.714581	1_1:-4805381	Msa0002670:CDS
AAGTCACTAACATTGATGGG+TGG	0.624878	1_1:-4805489	Msa0002670:CDS
AAGTTTGAAAGATCGAGATG+AGG	0.682349	1_1:-4804774	Msa0002670:CDS
AATATCATCATAAAGATAAA+AGG	0.310779	1_1:-4803666	Msa0002670:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAATATTTGCCCTTCAAA+AGG	+	chr1_1:4803116-4803135	None:intergenic	30.0%
TCAAGTCAATAACATTGATG+AGG	-	chr1_1:4803193-4803212	Msa0002670:three_prime_UTR	30.0%
CAAGTCAATAACATTGATGA+GGG	-	chr1_1:4803194-4803213	Msa0002670:three_prime_UTR	30.0%
AAGTCAATAACATTGATGAG+GGG	-	chr1_1:4803195-4803214	Msa0002670:three_prime_UTR	30.0%
GTAGTTACTAAGAGAAGAAT+TGG	-	chr1_1:4803479-4803498	Msa0002670:CDS	30.0%
ACAAATTGGAGCATATTGTT+TGG	-	chr1_1:4803858-4803877	Msa0002670:CDS	30.0%
CAAATTGGAGCATATTGTTT+GGG	-	chr1_1:4803859-4803878	Msa0002670:CDS	30.0%
AAAGTCCTTCAAATAAGCTA+AGG	+	chr1_1:4804177-4804196	None:intergenic	30.0%
GTCAAAATTAGAAATCAAGC+TGG	-	chr1_1:4804385-4804404	Msa0002670:intron	30.0%
CATGTAATAAACTGCAATGA+TGG	-	chr1_1:4804793-4804812	Msa0002670:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	4803041	4805557	4803041	ID=Msa0002670;Name=Msa0002670
chr1_1	mRNA	4803041	4805557	4803041	ID=Msa0002670-mRNA-1;Parent=Msa0002670;Name=Msa0002670-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0.5\|0.66\|1\|1\|1\|3\|262\|592
chr1_1	exon	4803041	4803324	4803041	ID=Msa0002670-mRNA-1:exon:1473;Parent=Msa0002670-mRNA-1
chr1_1	exon	4803411	4804225	4803411	ID=Msa0002670-mRNA-1:exon:1472;Parent=Msa0002670-mRNA-1
chr1_1	exon	4804616	4805557	4804616	ID=Msa0002670-mRNA-1:exon:1471;Parent=Msa0002670-mRNA-1
chr1_1	CDS	4804616	4805557	4804616	ID=Msa0002670-mRNA-1:cds;Parent=Msa0002670-mRNA-1
chr1_1	CDS	4803411	4804225	4803411	ID=Msa0002670-mRNA-1:cds;Parent=Msa0002670-mRNA-1
chr1_1	CDS	4803303	4803324	4803303	ID=Msa0002670-mRNA-1:cds;Parent=Msa0002670-mRNA-1
chr1_1	three_prime_UTR	4803041	4803302	4803041	ID=Msa0002670-mRNA-1:three_prime_utr;Parent=Msa0002670-mRNA-1

Gene Sequence

>Msa0002670

ATGATATCTGAAGTAAGCAATGATGCTAGTGATTGGCCCTTGCCTCAAGTCACTAACATTGATGGGTGGGTTCCTTTTGAAGGGCAAATATTTGAAGATGATGAATATGTAAATTCTTTAACATTTCAAGAGCTACAACATGAACCCTTGCCTCAAGTCAATAACATTGATGAGGGGATTCCTTTTGAAGGGAAAATATTTGAAAGTGATAATGCTGCTTTTGAATTTTATTGTTTATTTGCAAAACAAAATGGATTTTCTATTAGGCGTGATAACATTTATAAATCTTGTAAATTTGTGTCTGAAGAGAATCCATCGGGTGTTTATAAGAGGGAATTTGTTTGTCATCGTGGTGGTATTGGTAAACCACGCAAAACTGTTGAAGTGGAAAATCAAAGGAAACGAAAATCTTCAAGATGTGATTGTAGTGCAAAGATGGTAGTTACTAAGAGAAGAATTGGCATTGAGGAAAAATGGGTGGTTAAACATTTCAACAATTCTCACAACCGCGAGTTATTGGATGACAAAGAGGTTCAATTTCTTCCTGCTTATCGTAACATTCCAATTGTTGATCAAGATCGCATACTATTATTGTCTAAAGCCGGTTGCCCTGTAAGTCTTATAGCGAAAGTGCTTGAGTTAGAGAAAAGAACAGACACAGGAAATTTACCATTCTTAGAAAAAGATATTAGAAATTTTATTCAATCATATAGTGGTATTGGTAAAGAAAGTGATGCTTCAGATGTTCTCAGATTGTGCAAAAGTTTGAAAGATCGAGATGAGGCCTTCCAATATGAATTCACAATTGATGGAAGTAACAAATTGGAGCATATTGTTTGGGCATTTGGTGATTCAATTCGTGCATATGAAGCTTTTGGAGATGTTGTAGTTTTTGATACCACATATAGAATAAACGGTTATGAGATGCCTCTTGGAATATGGGTTGGTGTTGCTGTCAAAATTAGAAATCAAGCTGGAGAAGAGGCACGAATGCGTCAAAAGCATCATAATCCTCAGATTACAACACATTTTCCTATTGAAGAACATGCCTCGTCTATACTCACACCTTATGCCTTTAAGTTGCTTCAACATGAGATCGAATTATCTGCAAAGTATGCAGCAATTGAAGCTGCCAATGGCTCTTATGTTGTGCAACATCATACCAAAGTTGATGGTGGTCGTATAGTAAGTTTGATAAAAGAAGAAGAGTCAATTCAATGTTCTTGTAAAGAGTTTCAATTTTCAGGAATAATATGTAGACATGCAATTCGAGTGCTAATGTTGAAAAATTATTTTGTTCTTCCATCAAAATATCTTCCTTTTCGATGGAGACGAGAAAGTTCATTGATCCCAAAATCTAGTCATGTAATAAACTGCAATGATGGATCCTCTGCTAAATTTCAGTCTCTAATTCGATGTTTGGAAGTCGAATCATTAAAGACAAGTGAACGAGAACAGGTTGCCACAAGAGAGTTAGAAAATATCATCATAAAGATAAAAGGCATGCCTGAAACTCAAGAACATGTGATTGATTTGGAAGAGGATGTTTCCAACAATGCTGACTGTGACGTTGAAAATCCTGTTGTTTCAAAAACAAAAGGTCGGCCAAAAGGATCAAGACCAAAAGGAGGGGTTGAAGCTGCCAAGAAGCCTCGTCGTTGTCATGTTCCAGATTGTGGTGGAACTAATCACGACTCACGAAACTGTCCAAACAAAAAGAGAAAAATGGAAGTGTTGCCTTATCAATCTCCTAATAAGATCATGAAGGGTTGGAAGTAG

Protein sequence

>Msa0002670

MISEVSNDASDWPLPQVTNIDGWVPFEGQIFEDDEYVNSLTFQELQHEPLPQVNNIDEGIPFEGKIFESDNAAFEFYCLFAKQNGFSIRRDNIYKSCKFVSEENPSGVYKREFVCHRGGIGKPRKTVEVENQRKRKSSRCDCSAKMVVTKRRIGIEEKWVVKHFNNSHNRELLDDKEVQFLPAYRNIPIVDQDRILLLSKAGCPVSLIAKVLELEKRTDTGNLPFLEKDIRNFIQSYSGIGKESDASDVLRLCKSLKDRDEAFQYEFTIDGSNKLEHIVWAFGDSIRAYEAFGDVVVFDTTYRINGYEMPLGIWVGVAVKIRNQAGEEARMRQKHHNPQITTHFPIEEHASSILTPYAFKLLQHEIELSAKYAAIEAANGSYVVQHHTKVDGGRIVSLIKEEESIQCSCKEFQFSGIICRHAIRVLMLKNYFVLPSKYLPFRWRRESSLIPKSSHVINCNDGSSAKFQSLIRCLEVESLKTSEREQVATRELENIIIKIKGMPETQEHVIDLEEDVSNNADCDVENPVVSKTKGRPKGSRPKGGVEAAKKPRRCHVPDCGGTNHDSRNCPNKKRKMEVLPYQSPNKIMKGWK*