Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028700 | KAF1881981.1 | 56.911 | 615 | 188 | 8 | 5 | 586 | 2 | 572 | 0.0 | 664 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028700 | sp|Q9LKR4|FRS10_ARATH | 44.108 | 297 | 147 | 3 | 31 | 317 | 27 | 314 | 4.11e-75 | 255 |
| Msa0028700 | sp|Q9LKR4|FRS10_ARATH | 39.130 | 184 | 111 | 1 | 318 | 500 | 491 | 674 | 1.28e-34 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0028700 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002670 | Msa0028700 | 0.882957 | 6.735045e-71 | -8.615850e-47 |
| Msa0002720 | Msa0028700 | 0.824083 | 9.783193e-54 | -8.615850e-47 |
| Msa0028700 | Msa0032330 | 0.900075 | 1.052798e-77 | -8.615850e-47 |
| Msa0028700 | Msa0062860 | 0.812532 | 4.043181e-51 | -8.615850e-47 |
| Msa0028700 | Msa0105070 | 0.801642 | 8.179145e-49 | -8.615850e-47 |
| Msa0028700 | Msa0150270 | 0.803707 | 3.065573e-49 | -8.615850e-47 |
| Msa0028700 | Msa0166560 | 0.801820 | 7.517878e-49 | -8.615850e-47 |
| Msa0028700 | Msa0178960 | 0.848051 | 7.841297e-60 | -8.615850e-47 |
| Msa0028700 | Msa0178970 | 0.826859 | 2.152904e-54 | -8.615850e-47 |
| Msa0028700 | Msa0180500 | 0.819636 | 1.046490e-52 | -8.615850e-47 |
| Msa0028700 | Msa0215320 | -0.800967 | 1.124306e-48 | -8.615850e-47 |
| Msa0028700 | Msa0223260 | 0.808371 | 3.201282e-50 | -8.615850e-47 |
| Msa0028700 | Msa0278110 | 0.810675 | 1.024477e-50 | -8.615850e-47 |
| Msa0028700 | Msa0279790 | 0.821094 | 4.846188e-53 | -8.615850e-47 |
| Msa0028700 | Msa0317290 | 0.864786 | 9.461091e-65 | -8.615850e-47 |
| Msa0028700 | Msa0328810 | 0.803682 | 3.102612e-49 | -8.615850e-47 |
| Msa0028700 | Msa0340450 | 0.806182 | 9.311500e-50 | -8.615850e-47 |
| Msa0028700 | Msa0350990 | 0.820034 | 8.487937e-53 | -8.615850e-47 |
| Msa0028700 | Msa0351030 | 0.819913 | 9.047391e-53 | -8.615850e-47 |
| Msa0028700 | Msa0406880 | 0.814413 | 1.560117e-51 | -8.615850e-47 |
| Msa0028700 | Msa0424320 | 0.819573 | 1.082035e-52 | -8.615850e-47 |
| Msa0028700 | Msa0425790 | 0.804946 | 1.691954e-49 | -8.615850e-47 |
| Msa0028700 | Msa0466390 | 0.822985 | 1.767412e-53 | -8.615850e-47 |
| Msa0028700 | Msa0479340 | 0.801296 | 9.629357e-49 | -8.615850e-47 |
| Msa0028700 | Msa0516750 | 0.896713 | 2.830894e-76 | -8.615850e-47 |
| Msa0028700 | Msa0523940 | 0.833875 | 4.148004e-56 | -8.615850e-47 |
| Msa0028700 | Msa0529040 | 0.803812 | 2.915792e-49 | -8.615850e-47 |
| Msa0028700 | Msa0545700 | 0.821817 | 3.299796e-53 | -8.615850e-47 |
| Msa0028700 | Msa0562440 | 0.809650 | 1.703587e-50 | -8.615850e-47 |
| Msa0028700 | Msa0610800 | 0.811401 | 7.131060e-51 | -8.615850e-47 |
| Msa0028700 | Msa0615740 | 0.845508 | 3.886500e-59 | -8.615850e-47 |
| Msa0028700 | Msa0701010 | 0.823256 | 1.527234e-53 | -8.615850e-47 |
| Msa0028700 | Msa0731940 | 0.801917 | 7.179636e-49 | -8.615850e-47 |
| Msa0028700 | Msa0738500 | 0.891593 | 3.447457e-74 | -8.615850e-47 |
| Msa0028700 | Msa0743720 | 0.813690 | 2.253372e-51 | -8.615850e-47 |
| Msa0028700 | Msa0768290 | 0.800210 | 1.604017e-48 | -8.615850e-47 |
| Msa0028700 | Msa0768370 | 0.811164 | 8.028148e-51 | -8.615850e-47 |
| Msa0028700 | Msa0810220 | 0.803361 | 3.616794e-49 | -8.615850e-47 |
| Msa0028700 | Msa0820850 | 0.810793 | 9.658984e-51 | -8.615850e-47 |
| Msa0028700 | Msa0828940 | 0.800746 | 1.247431e-48 | -8.615850e-47 |
| Msa0028700 | Msa0842650 | 0.811984 | 5.324942e-51 | -8.615850e-47 |
| Msa0028700 | Msa0844490 | 0.807463 | 4.994387e-50 | -8.615850e-47 |
| Msa0028700 | Msa0849030 | 0.831556 | 1.561374e-55 | -8.615850e-47 |
| Msa0028700 | Msa0861130 | 0.809819 | 1.567345e-50 | -8.615850e-47 |
| Msa0028700 | Msa0876580 | 0.814039 | 1.887489e-51 | -8.615850e-47 |
| Msa0028700 | Msa0877250 | 0.831300 | 1.805073e-55 | -8.615850e-47 |
| Msa0028700 | Msa0917880 | 0.833827 | 4.265019e-56 | -8.615850e-47 |
| Msa0028700 | Msa0925250 | 0.825166 | 5.437399e-54 | -8.615850e-47 |
| Msa0028700 | Msa0925290 | 0.814895 | 1.220395e-51 | -8.615850e-47 |
| Msa0028700 | Msa0927380 | 0.814877 | 1.231492e-51 | -8.615850e-47 |
| Msa0028700 | Msa0936300 | 0.808017 | 3.807953e-50 | -8.615850e-47 |
| Msa0028700 | Msa0938220 | 0.811037 | 8.552702e-51 | -8.615850e-47 |
| Msa0028700 | Msa0953120 | 0.813269 | 2.788437e-51 | -8.615850e-47 |
| Msa0028700 | Msa0958550 | 0.815009 | 1.151160e-51 | -8.615850e-47 |
| Msa0028700 | Msa0964900 | 0.807462 | 4.996416e-50 | -8.615850e-47 |
| Msa0028700 | Msa0974080 | 0.800448 | 1.434725e-48 | -8.615850e-47 |
| Msa0028700 | Msa0980090 | 0.899706 | 1.519093e-77 | -8.615850e-47 |
| Msa0028700 | Msa0998690 | 0.804346 | 2.257745e-49 | -8.615850e-47 |
| Msa0028700 | Msa1000900 | 0.814313 | 1.641528e-51 | -8.615850e-47 |
| Msa0028700 | Msa1003620 | 0.807925 | 3.982968e-50 | -8.615850e-47 |
| Msa0028700 | Msa1014540 | 0.817555 | 3.104085e-52 | -8.615850e-47 |
| Msa0028700 | Msa1037420 | 0.809255 | 2.071251e-50 | -8.615850e-47 |
| Msa0028700 | Msa1046460 | 0.804208 | 2.411951e-49 | -8.615850e-47 |
| Msa0028700 | Msa1070010 | 0.806638 | 7.462353e-50 | -8.615850e-47 |
| Msa0028700 | Msa1085740 | 0.845298 | 4.431453e-59 | -8.615850e-47 |
| Msa0028700 | Msa1139680 | 0.824076 | 9.817470e-54 | -8.615850e-47 |
| Msa0028700 | Msa1156020 | 0.892734 | 1.207823e-74 | -8.615850e-47 |
| Msa0028700 | Msa1190400 | 0.804576 | 2.021315e-49 | -8.615850e-47 |
| Msa0028700 | Msa1238930 | 0.801517 | 8.676101e-49 | -8.615850e-47 |
| Msa0028700 | Msa1244250 | 0.843500 | 1.348474e-58 | -8.615850e-47 |
| Msa0028700 | Msa1249490 | 0.805845 | 1.096478e-49 | -8.615850e-47 |
| Msa0028700 | Msa1273920 | 0.807632 | 4.598510e-50 | -8.615850e-47 |
| Msa0028700 | Msa1277660 | 0.824736 | 6.867253e-54 | -8.615850e-47 |
| Msa0028700 | Msa1284680 | 0.824686 | 7.054954e-54 | -8.615850e-47 |
| Msa0028700 | Msa1306760 | 0.801977 | 6.979762e-49 | -8.615850e-47 |
| Msa0028700 | Msa1348950 | 0.806417 | 8.311401e-50 | -8.615850e-47 |
| Msa0028700 | Msa1362880 | 0.809812 | 1.572911e-50 | -8.615850e-47 |
| Msa0028700 | Msa1427230 | 0.814163 | 1.771963e-51 | -8.615850e-47 |
| Msa0028700 | Msa1460830 | 0.805615 | 1.225349e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028700 | MtrunA17_Chr5g0431001 | 88.328 | 317 | 37 | 0 | 1 | 317 | 1 | 317 | 0.0 | 583 |
| Msa0028700 | MtrunA17_Chr1g0198761 | 72.569 | 288 | 78 | 1 | 31 | 317 | 16 | 303 | 5.81e-144 | 434 |
| Msa0028700 | MtrunA17_Chr1g0198761 | 72.662 | 278 | 76 | 0 | 315 | 592 | 479 | 756 | 4.16e-141 | 427 |
| Msa0028700 | MtrunA17_Chr2g0276841 | 44.574 | 258 | 138 | 2 | 60 | 317 | 69 | 321 | 2.91e-72 | 245 |
| Msa0028700 | MtrunA17_Chr2g0276841 | 41.146 | 192 | 107 | 3 | 315 | 503 | 497 | 685 | 5.24e-40 | 155 |
| Msa0028700 | MtrunA17_Chr2g0294841 | 45.977 | 261 | 133 | 3 | 60 | 317 | 44 | 299 | 2.75e-67 | 233 |
| Msa0028700 | MtrunA17_Chr2g0294841 | 31.769 | 277 | 161 | 5 | 315 | 569 | 475 | 745 | 6.44e-38 | 149 |
| Msa0028700 | MtrunA17_Chr2g0290391 | 43.284 | 268 | 133 | 3 | 61 | 317 | 51 | 310 | 4.92e-66 | 228 |
| Msa0028700 | MtrunA17_Chr2g0290391 | 44.776 | 201 | 91 | 5 | 315 | 505 | 486 | 676 | 7.79e-38 | 149 |
| Msa0028700 | MtrunA17_Chr5g0430921 | 95.294 | 85 | 4 | 0 | 502 | 586 | 1 | 85 | 1.34e-50 | 169 |
| Msa0028700 | MtrunA17_Chr3g0081281 | 82.609 | 92 | 16 | 0 | 210 | 301 | 2 | 93 | 7.57e-46 | 156 |
| Msa0028700 | MtrunA17_Chr2g0287651 | 28.159 | 277 | 180 | 8 | 45 | 316 | 60 | 322 | 1.16e-24 | 109 |
| Msa0028700 | MtrunA17_Chr1g0203051 | 26.578 | 301 | 183 | 9 | 28 | 317 | 52 | 325 | 4.53e-23 | 103 |
| Msa0028700 | MtrunA17_Chr6g0458391 | 27.863 | 262 | 157 | 7 | 58 | 317 | 222 | 453 | 1.10e-20 | 96.7 |
| Msa0028700 | MtrunA17_Chr8g0363841 | 27.863 | 262 | 167 | 8 | 62 | 317 | 18 | 263 | 3.38e-20 | 94.7 |
| Msa0028700 | MtrunA17_Chr5g0448761 | 27.473 | 273 | 181 | 6 | 50 | 317 | 52 | 312 | 6.33e-20 | 94.4 |
| Msa0028700 | MtrunA17_Chr1g0202341 | 26.299 | 308 | 203 | 10 | 13 | 317 | 10 | 296 | 4.75e-19 | 91.3 |
| Msa0028700 | MtrunA17_Chr1g0202341 | 27.619 | 210 | 131 | 5 | 318 | 514 | 475 | 676 | 8.83e-11 | 65.1 |
| Msa0028700 | MtrunA17_Chr1g0203721 | 26.894 | 264 | 165 | 7 | 64 | 317 | 66 | 311 | 1.33e-16 | 83.6 |
| Msa0028700 | MtrunA17_Chr5g0440451 | 23.273 | 275 | 169 | 6 | 61 | 317 | 43 | 293 | 2.68e-16 | 82.8 |
| Msa0028700 | MtrunA17_Chr5g0440451 | 27.660 | 188 | 122 | 4 | 337 | 517 | 489 | 669 | 7.12e-14 | 75.1 |
| Msa0028700 | MtrunA17_Chr3g0082121 | 29.771 | 262 | 158 | 10 | 60 | 317 | 42 | 281 | 1.37e-15 | 80.5 |
| Msa0028700 | MtrunA17_Chr5g0441581 | 28.652 | 178 | 113 | 5 | 141 | 317 | 102 | 266 | 2.32e-15 | 79.7 |
| Msa0028700 | MtrunA17_Chr2g0296781 | 26.848 | 257 | 161 | 8 | 67 | 317 | 3 | 238 | 3.50e-15 | 79.0 |
| Msa0028700 | MtrunA17_Chr7g0258861 | 23.755 | 261 | 175 | 5 | 61 | 314 | 10 | 253 | 2.68e-13 | 71.2 |
| Msa0028700 | MtrunA17_Chr2g0324011 | 23.954 | 263 | 175 | 5 | 61 | 316 | 10 | 254 | 4.54e-13 | 72.0 |
| Msa0028700 | MtrunA17_Chr2g0329031 | 26.459 | 257 | 157 | 9 | 67 | 317 | 20 | 250 | 1.03e-12 | 71.2 |
| Msa0028700 | MtrunA17_Chr6g0477261 | 35.156 | 128 | 75 | 3 | 194 | 317 | 4 | 127 | 2.33e-12 | 70.1 |
| Msa0028700 | MtrunA17_Chr1g0207551 | 26.894 | 264 | 166 | 9 | 61 | 317 | 34 | 277 | 1.80e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028700 | AT5G28530.1 | 44.108 | 297 | 147 | 3 | 31 | 317 | 27 | 314 | 4.18e-76 | 255 |
| Msa0028700 | AT5G28530.1 | 39.130 | 184 | 111 | 1 | 318 | 500 | 491 | 674 | 1.30e-35 | 142 |
| Msa0028700 | AT5G28530.3 | 44.108 | 297 | 147 | 3 | 31 | 317 | 27 | 314 | 4.37e-76 | 255 |
| Msa0028700 | AT5G28530.3 | 41.667 | 168 | 97 | 1 | 334 | 500 | 503 | 670 | 6.22e-35 | 140 |
| Msa0028700 | AT5G28530.2 | 44.108 | 297 | 147 | 3 | 31 | 317 | 27 | 314 | 4.37e-76 | 255 |
| Msa0028700 | AT5G28530.2 | 41.667 | 168 | 97 | 1 | 334 | 500 | 503 | 670 | 6.22e-35 | 140 |
| Msa0028700 | AT1G10240.2 | 45.085 | 295 | 149 | 6 | 30 | 317 | 11 | 299 | 1.68e-72 | 246 |
| Msa0028700 | AT1G10240.2 | 39.806 | 206 | 122 | 2 | 315 | 519 | 475 | 679 | 2.51e-41 | 159 |
| Msa0028700 | AT1G10240.1 | 45.085 | 295 | 149 | 6 | 30 | 317 | 11 | 299 | 1.68e-72 | 246 |
| Msa0028700 | AT1G10240.1 | 39.806 | 206 | 122 | 2 | 315 | 519 | 475 | 679 | 2.51e-41 | 159 |
| Msa0028700 | AT5G28530.5 | 37.377 | 305 | 160 | 5 | 31 | 328 | 27 | 307 | 1.21e-52 | 190 |
| Msa0028700 | AT5G28530.5 | 41.667 | 168 | 97 | 1 | 334 | 500 | 440 | 607 | 5.64e-35 | 140 |
| Msa0028700 | AT5G28530.4 | 37.377 | 305 | 160 | 5 | 31 | 328 | 27 | 307 | 1.32e-52 | 190 |
| Msa0028700 | AT5G28530.4 | 39.130 | 184 | 111 | 1 | 318 | 500 | 428 | 611 | 1.27e-35 | 142 |
| Msa0028700 | AT4G38180.1 | 28.185 | 259 | 174 | 4 | 61 | 317 | 73 | 321 | 4.15e-21 | 98.2 |
| Msa0028700 | AT4G15090.1 | 26.154 | 260 | 176 | 8 | 61 | 317 | 51 | 297 | 3.40e-15 | 79.7 |
| Msa0028700 | AT4G15090.5 | 26.154 | 260 | 176 | 8 | 61 | 317 | 51 | 297 | 3.40e-15 | 79.7 |
| Msa0028700 | AT4G15090.3 | 26.154 | 260 | 176 | 8 | 61 | 317 | 51 | 297 | 3.40e-15 | 79.7 |
| Msa0028700 | AT4G15090.2 | 26.154 | 260 | 176 | 8 | 61 | 317 | 51 | 297 | 3.40e-15 | 79.7 |
| Msa0028700 | AT4G15090.4 | 26.154 | 260 | 176 | 8 | 61 | 317 | 51 | 297 | 3.40e-15 | 79.7 |
| Msa0028700 | AT4G38170.1 | 38.462 | 117 | 68 | 2 | 337 | 449 | 284 | 400 | 6.53e-14 | 75.1 |
| Msa0028700 | AT1G76320.1 | 26.255 | 259 | 156 | 10 | 67 | 317 | 3 | 234 | 1.45e-13 | 74.3 |
| Msa0028700 | AT1G76320.4 | 26.255 | 259 | 156 | 10 | 67 | 317 | 3 | 234 | 1.45e-13 | 74.3 |
| Msa0028700 | AT1G76320.2 | 26.255 | 259 | 156 | 10 | 67 | 317 | 3 | 234 | 1.56e-13 | 74.3 |
| Msa0028700 | AT1G76320.3 | 26.255 | 259 | 156 | 10 | 67 | 317 | 3 | 234 | 2.86e-13 | 73.2 |
| Msa0028700 | AT3G22170.2 | 25.887 | 282 | 166 | 12 | 49 | 317 | 55 | 306 | 3.32e-13 | 73.2 |
| Msa0028700 | AT3G22170.1 | 25.887 | 282 | 166 | 12 | 49 | 317 | 55 | 306 | 3.32e-13 | 73.2 |
| Msa0028700 | AT2G27110.2 | 28.916 | 166 | 107 | 5 | 338 | 497 | 465 | 625 | 1.25e-11 | 68.2 |
| Msa0028700 | AT2G27110.1 | 28.916 | 166 | 107 | 5 | 338 | 497 | 465 | 625 | 1.25e-11 | 68.2 |
| Msa0028700 | AT2G27110.3 | 30.120 | 166 | 105 | 6 | 338 | 497 | 320 | 480 | 1.43e-11 | 67.8 |
Find 99 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTACATGACTAGATTT+TGG | 0.131548 | 1_1:+53731889 | None:intergenic |
| CCAATTAAAACTTACTTATT+AGG | 0.177601 | 1_1:+53731490 | None:intergenic |
| TTCTCACAACCGCGAGTTAT+TGG | 0.184751 | 1_1:-53733133 | Msa0028700:CDS |
| ATGAGATGCCTCTTGGAATA+TGG | 0.196486 | 1_1:-53732711 | Msa0028700:CDS |
| ATCACATGTTCTTGAGTTTC+AGG | 0.210618 | 1_1:+53731733 | None:intergenic |
| ACAGTTTGATCAAAACTATT+TGG | 0.235348 | 1_1:+53731339 | None:intergenic |
| CTCATGTTGAAGCAACTTAA+AGG | 0.248230 | 1_1:+53732167 | None:intergenic |
| TGTTTATTTGCAAAACAAAA+TGG | 0.260407 | 1_1:-53733399 | Msa0028700:CDS |
| ATTCGTGCATATGAAGCTTT+TGG | 0.265394 | 1_1:-53732775 | Msa0028700:CDS |
| CAATATGAATTCACAATTGA+TGG | 0.266214 | 1_1:-53732841 | Msa0028700:CDS |
| AATATCATCATAAAGATAAA+AGG | 0.310779 | 1_1:-53731760 | Msa0028700:CDS |
| TCAAGAACATGTGATTGATT+TGG | 0.314506 | 1_1:-53731725 | Msa0028700:CDS |
| CATCAATTGTGAATTCATAT+TGG | 0.326055 | 1_1:+53732842 | None:intergenic |
| GCAGCTTCAACCCCTCCTTT+TGG | 0.339248 | 1_1:+53731619 | None:intergenic |
| ATTCAATCATATAGTGGTAT+TGG | 0.341059 | 1_1:-53732931 | Msa0028700:CDS |
| ACTCTCGCTATAAGACTTAC+AGG | 0.343612 | 1_1:+53733021 | None:intergenic |
| CAAATTGGAGCATATTGTTT+GGG | 0.347369 | 1_1:-53732812 | Msa0028700:CDS |
| GAGCATATTGTTTGGGCATT+TGG | 0.348974 | 1_1:-53732805 | Msa0028700:CDS |
| ACAAATTGGAGCATATTGTT+TGG | 0.352856 | 1_1:-53732813 | Msa0028700:CDS |
| AATTGATGGAAGTAACAAAT+TGG | 0.358783 | 1_1:-53732827 | Msa0028700:CDS |
| TCAGTCTCTAATTCGATGTT+TGG | 0.372448 | 1_1:-53731839 | Msa0028700:CDS |
| AACGTCACAGTCAGCATTGT+TGG | 0.377007 | 1_1:+53731690 | None:intergenic |
| ATGACAACGAAGAGGCTTCT+TGG | 0.378800 | 1_1:+53731597 | None:intergenic |
| GTAGTTACTAAGAGAAGAAT+TGG | 0.389295 | 1_1:-53733192 | Msa0028700:CDS |
| CCTCAAGTCACTAACATTGA+TGG | 0.399508 | 1_1:-53733588 | Msa0028700:CDS |
| AGTGAATTAGACAGATGAAT+TGG | 0.402311 | 1_1:-53731284 | Msa0028700:three_prime_UTR |
| TCAAATATTTGCCCTTCAAA+AGG | 0.411166 | 1_1:+53733558 | None:intergenic |
| ATACTAGTAATTACACAGTT+TGG | 0.415911 | 1_1:+53731154 | None:intergenic |
| ATCCATCGGGTGTTTATAAG+AGG | 0.417116 | 1_1:-53733320 | Msa0028700:CDS |
| GTCATCTTGAAATAGTGAAT+TGG | 0.425948 | 1_1:-53731375 | Msa0028700:three_prime_UTR |
| TGAGATGCCTCTTGGAATAT+GGG | 0.433904 | 1_1:-53732710 | Msa0028700:intron |
| TATACGACCACCATCAACTT+TGG | 0.437731 | 1_1:+53732077 | None:intergenic |
| GACGAGGCATGTTCTTCAAT+AGG | 0.443666 | 1_1:+53732207 | None:intergenic |
| TGATTAGTTCCACCACAATC+TGG | 0.446933 | 1_1:+53731571 | None:intergenic |
| AACCGTTATGAGATGCCTCT+TGG | 0.448749 | 1_1:-53732718 | Msa0028700:CDS |
| AAAGACAAGTGAACGAGAAC+AGG | 0.453486 | 1_1:-53731803 | Msa0028700:CDS |
| CATGTAATAAACTGCAATGA+TGG | 0.453622 | 1_1:-53731877 | Msa0028700:CDS |
| GTTTGTCATCGTGGTGGTAT+TGG | 0.458689 | 1_1:-53733291 | Msa0028700:CDS |
| ATGCGATCTTGATCAACAAT+TGG | 0.465554 | 1_1:+53733069 | None:intergenic |
| CGTTGTCATGTTCCAGATTG+TGG | 0.469601 | 1_1:-53731583 | Msa0028700:CDS |
| ATAACGGTTTATTCTATATG+TGG | 0.472493 | 1_1:+53732732 | None:intergenic |
| TATAAGACTTACAGGGCAAC+CGG | 0.483233 | 1_1:+53733029 | None:intergenic |
| AAAACAAAAGGTCGGCCAAA+AGG | 0.495104 | 1_1:-53731649 | Msa0028700:CDS |
| TTGATAGGATCATGAAGGGT+TGG | 0.498564 | 1_1:-53731403 | Msa0028700:intron |
| TGAAGCAACTTAAAGGCATA+AGG | 0.499495 | 1_1:+53732174 | None:intergenic |
| AATTGTGAATTCATATTGGA+AGG | 0.507660 | 1_1:+53732846 | None:intergenic |
| CCAAAAGGATCAAGACCAAA+AGG | 0.514192 | 1_1:-53731634 | Msa0028700:CDS |
| CTTTCTCGTCTCCATCGAAA+AGG | 0.515070 | 1_1:+53731922 | None:intergenic |
| GTCAAAATTAGAAATCAAGC+TGG | 0.517568 | 1_1:-53732285 | Msa0028700:CDS |
| TGGTAATAATAAACTATAGC+AGG | 0.519610 | 1_1:+53731174 | None:intergenic |
| ATTGGAATGTTACGATAAGC+AGG | 0.522557 | 1_1:+53733087 | None:intergenic |
| TAGTTTGATCAAAGCAGCTT+CGG | 0.523562 | 1_1:+53731261 | None:intergenic |
| ATGTTATTGACTTGAGGCAA+GGG | 0.525418 | 1_1:+53733486 | None:intergenic |
| TAAGCAATGATGCTAGTGAT+TGG | 0.525487 | 1_1:-53733617 | Msa0028700:CDS |
| ACCACGCAAAACTGTTGAAG+TGG | 0.526679 | 1_1:-53733265 | Msa0028700:CDS |
| ATACTATTATTGTCTAAAGC+CGG | 0.531055 | 1_1:-53733048 | Msa0028700:CDS |
| TTCCAAGAGGCATCTCATAA+CGG | 0.531646 | 1_1:+53732716 | None:intergenic |
| CAACATCATACCAAAGTTGA+TGG | 0.538288 | 1_1:-53732087 | Msa0028700:CDS |
| TTGCACAACATAAGAGCCAT+TGG | 0.551354 | 1_1:+53732107 | None:intergenic |
| CTCAAGTCACTAACATTGAT+GGG | 0.551567 | 1_1:-53733587 | Msa0028700:CDS |
| TAAGAGAAGAATTGGCATTG+AGG | 0.553953 | 1_1:-53733184 | Msa0028700:CDS |
| CGAGTTATTGGATGACAAAG+AGG | 0.556388 | 1_1:-53733121 | Msa0028700:CDS |
| GTGCTTTGATAGGATCATGA+AGG | 0.556862 | 1_1:-53731408 | Msa0028700:intron |
| CAAGTCAATAACATTGATGA+GGG | 0.558520 | 1_1:-53733477 | Msa0028700:CDS |
| ACATGTGATTGATTTGGAAG+AGG | 0.565753 | 1_1:-53731719 | Msa0028700:CDS |
| GGAAAATGTGTTGTAATCTG+AGG | 0.568974 | 1_1:+53732228 | None:intergenic |
| ATGTGATTGTAGTGCAAAGA+TGG | 0.570079 | 1_1:-53733214 | Msa0028700:CDS |
| ATGTTAGTGACTTGAGGCAA+GGG | 0.572230 | 1_1:+53733594 | None:intergenic |
| GTGTCTGAAGAGAATCCATC+GGG | 0.572540 | 1_1:-53733333 | Msa0028700:CDS |
| TCATCAATGTTATTGACTTG+AGG | 0.573525 | 1_1:+53733480 | None:intergenic |
| TAGAAATCAAGCTGGAGAAG+AGG | 0.577533 | 1_1:-53732277 | Msa0028700:CDS |
| AATGTTATTGACTTGAGGCA+AGG | 0.580693 | 1_1:+53733485 | None:intergenic |
| AGTCACTAACATTGATGGGT+GGG | 0.589348 | 1_1:-53733583 | Msa0028700:CDS |
| AATGTTAGTGACTTGAGGCA+AGG | 0.597462 | 1_1:+53733593 | None:intergenic |
| AGGGAATTTGTTTGTCATCG+TGG | 0.598966 | 1_1:-53733300 | Msa0028700:CDS |
| TGTGTCTGAAGAGAATCCAT+CGG | 0.599444 | 1_1:-53733334 | Msa0028700:CDS |
| TCCCTCTTATAAACACCCGA+TGG | 0.599604 | 1_1:+53733318 | None:intergenic |
| GCAGCAATTGAAGCTGCCAA+TGG | 0.600590 | 1_1:-53732123 | Msa0028700:CDS |
| TCAAGTCAATAACATTGATG+AGG | 0.603097 | 1_1:-53733478 | Msa0028700:CDS |
| CTGTTGAAGTGGAAAATCAA+AGG | 0.606328 | 1_1:-53733254 | Msa0028700:CDS |
| AAGGATCAAGACCAAAAGGA+GGG | 0.611165 | 1_1:-53731630 | Msa0028700:CDS |
| CCATCAATGTTAGTGACTTG+AGG | 0.613145 | 1_1:+53733588 | None:intergenic |
| GAATTTGTTTGTCATCGTGG+TGG | 0.618777 | 1_1:-53733297 | Msa0028700:CDS |
| AAGTCACTAACATTGATGGG+TGG | 0.624878 | 1_1:-53733584 | Msa0028700:CDS |
| TCCATCGGGTGTTTATAAGA+GGG | 0.625908 | 1_1:-53733319 | Msa0028700:CDS |
| CTTTGTCATCCAATAACTCG+CGG | 0.626544 | 1_1:+53733124 | None:intergenic |
| TACTTATTAGGAGATTGAGA+AGG | 0.635742 | 1_1:+53731502 | None:intergenic |
| TGTCATGTTCCAGATTGTGG+TGG | 0.637809 | 1_1:-53731580 | Msa0028700:CDS |
| CTCTCGCTATAAGACTTACA+GGG | 0.647869 | 1_1:+53733022 | None:intergenic |
| AAAGGATCAAGACCAAAAGG+AGG | 0.655085 | 1_1:-53731631 | Msa0028700:CDS |
| TAGAGACTGAAATTTAGCAG+AGG | 0.662901 | 1_1:+53731852 | None:intergenic |
| ACACCAACCCATATTCCAAG+AGG | 0.676376 | 1_1:+53732703 | None:intergenic |
| TGCTTTGATAGGATCATGAA+GGG | 0.676443 | 1_1:-53731407 | Msa0028700:intron |
| AAGTTTGAAAGATCGAGATG+AGG | 0.682349 | 1_1:-53732869 | Msa0028700:CDS |
| CATCATACCAAAGTTGATGG+TGG | 0.683172 | 1_1:-53732084 | Msa0028700:CDS |
| AGGATCAAGACCAAAAGGAG+GGG | 0.696841 | 1_1:-53731629 | Msa0028700:CDS |
| TCTGGAACATGACAACGAAG+AGG | 0.702047 | 1_1:+53731589 | None:intergenic |
| AAGTCAATAACATTGATGAG+GGG | 0.714581 | 1_1:-53733476 | Msa0028700:CDS |
| ATAAGGTGTGAGTATAGACG+AGG | 0.720548 | 1_1:+53732191 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATTAACTGTATTTTTA+TGG | - | chr1_1:53733335-53733354 | Msa0028700:CDS | 10.0% |
| !!! | AATTTTATTCAATCATATAG+TGG | - | chr1_1:53731828-53731847 | Msa0028700:CDS | 15.0% |
| !! | AATATCATCATAAAGATAAA+AGG | - | chr1_1:53733005-53733024 | Msa0028700:CDS | 15.0% |
| !!! | TATGTAATTAGTATATTTTG+TGG | - | chr1_1:53733525-53733544 | Msa0028700:CDS | 15.0% |
| !! | TGTTTATTTGCAAAACAAAA+TGG | - | chr1_1:53731366-53731385 | Msa0028700:three_prime_UTR | 20.0% |
| !!! | AACAAAATGGATTTTCTATT+AGG | - | chr1_1:53731379-53731398 | Msa0028700:exon | 20.0% |
| !!! | CTAATATCTTTTTCTAAGAA+TGG | + | chr1_1:53731807-53731826 | None:intergenic | 20.0% |
| !!! | CATGGAAATTCATTTTTTTT+TGG | - | chr1_1:53732092-53732111 | Msa0028700:CDS | 20.0% |
| !!! | TGATTGTTATATTTTTGTGT+AGG | - | chr1_1:53732446-53732465 | Msa0028700:intron | 20.0% |
| !!! | TTATTACATGACTAGATTTT+GGG | + | chr1_1:53732878-53732897 | None:intergenic | 20.0% |
| !!! | TTTATTACATGACTAGATTT+TGG | + | chr1_1:53732879-53732898 | None:intergenic | 20.0% |
| !! | CCAATTAAAACTTACTTATT+AGG | + | chr1_1:53733278-53733297 | None:intergenic | 20.0% |
| !!! | CCTAATAAGTAAGTTTTAAT+TGG | - | chr1_1:53733275-53733294 | Msa0028700:CDS | 20.0% |
| !! | TCAAATATTTTCCCTTCAAA+AGG | + | chr1_1:53731318-53731337 | None:intergenic | 25.0% |
| !! | ATACTATTATTGTCTAAAGC+CGG | - | chr1_1:53731717-53731736 | Msa0028700:CDS | 25.0% |
| ! | ATTCAATCATATAGTGGTAT+TGG | - | chr1_1:53731834-53731853 | Msa0028700:CDS | 25.0% |
| ! | AATTGTGAATTCATATTGGA+AGG | + | chr1_1:53731922-53731941 | None:intergenic | 25.0% |
| ! | CATCAATTGTGAATTCATAT+TGG | + | chr1_1:53731926-53731945 | None:intergenic | 25.0% |
| ! | CAATATGAATTCACAATTGA+TGG | - | chr1_1:53731924-53731943 | Msa0028700:CDS | 25.0% |
| ! | AATTGATGGAAGTAACAAAT+TGG | - | chr1_1:53731938-53731957 | Msa0028700:CDS | 25.0% |
| ! | ATAACGGTTTATTCTATATG+TGG | + | chr1_1:53732036-53732055 | None:intergenic | 25.0% |
| !!! | AAAATCTGTCAAACTTGTTT+TGG | + | chr1_1:53732364-53732383 | None:intergenic | 25.0% |
| !!! | TGTTATATTTTTGTGTAGGT+TGG | - | chr1_1:53732450-53732469 | Msa0028700:intron | 25.0% |
| !! | TGTAAAGAGTTTCAATTTTC+AGG | - | chr1_1:53732750-53732769 | Msa0028700:CDS | 25.0% |
| ! | TTGTTTCAAAAACAAAAGGT+CGG | - | chr1_1:53733108-53733127 | Msa0028700:CDS | 25.0% |
| ! | TCCAAACAAAAAGAGAAAAA+TGG | - | chr1_1:53733232-53733251 | Msa0028700:CDS | 25.0% |
| !!! | TCCATTTTTCTCTTTTTGTT+TGG | + | chr1_1:53733236-53733255 | None:intergenic | 25.0% |
| !!! | TATTTTTATGGTGCTTTGAT+AGG | - | chr1_1:53733347-53733366 | Msa0028700:CDS | 25.0% |
| ! | ACAGTTTGATCAAAACTATT+TGG | + | chr1_1:53733429-53733448 | None:intergenic | 25.0% |
| !! | TGTGTAATTAGTGAATTTTG+TGG | - | chr1_1:53733446-53733465 | Msa0028700:CDS | 25.0% |
| ! | TGGTAATAATAAACTATAGC+AGG | + | chr1_1:53733594-53733613 | None:intergenic | 25.0% |
| ! | ATACTAGTAATTACACAGTT+TGG | + | chr1_1:53733614-53733633 | None:intergenic | 25.0% |
| TCAAATATTTGCCCTTCAAA+AGG | + | chr1_1:53731210-53731229 | None:intergenic | 30.0% | |
| !! | TCATCAATGTTATTGACTTG+AGG | + | chr1_1:53731288-53731307 | None:intergenic | 30.0% |
| TCAAGTCAATAACATTGATG+AGG | - | chr1_1:53731287-53731306 | Msa0028700:three_prime_UTR | 30.0% | |
| CAAGTCAATAACATTGATGA+GGG | - | chr1_1:53731288-53731307 | Msa0028700:three_prime_UTR | 30.0% | |
| AAGTCAATAACATTGATGAG+GGG | - | chr1_1:53731289-53731308 | Msa0028700:three_prime_UTR | 30.0% | |
| GTAGTTACTAAGAGAAGAAT+TGG | - | chr1_1:53731573-53731592 | Msa0028700:CDS | 30.0% | |
| ! | AATTGGCATTGAGGAAAAAT+GGG | - | chr1_1:53731590-53731609 | Msa0028700:CDS | 30.0% |
| ACAAATTGGAGCATATTGTT+TGG | - | chr1_1:53731952-53731971 | Msa0028700:CDS | 30.0% | |
| CAAATTGGAGCATATTGTTT+GGG | - | chr1_1:53731953-53731972 | Msa0028700:CDS | 30.0% | |
| ! | TCTTTACCCATCGTAAATTT+TGG | - | chr1_1:53732244-53732263 | Msa0028700:CDS | 30.0% |
| ! | CTTTACCCATCGTAAATTTT+GGG | - | chr1_1:53732245-53732264 | Msa0028700:CDS | 30.0% |
| AAAGTCCTTCAAATAAGCTA+AGG | + | chr1_1:53732271-53732290 | None:intergenic | 30.0% | |
| !!! | TTGAAGGACTTTTTTTTTGC+TGG | - | chr1_1:53732279-53732298 | Msa0028700:CDS | 30.0% |
| GTCAAAATTAGAAATCAAGC+TGG | - | chr1_1:53732480-53732499 | Msa0028700:intron | 30.0% | |
| !! | CGAAAAGGAAGATATTTTGA+TGG | + | chr1_1:53732831-53732850 | None:intergenic | 30.0% |
| ! | CAAAATATCTTCCTTTTCGA+TGG | - | chr1_1:53732832-53732851 | Msa0028700:CDS | 30.0% |
| CATGTAATAAACTGCAATGA+TGG | - | chr1_1:53732888-53732907 | Msa0028700:CDS | 30.0% | |
| ! | GATATTTTCTAACTCTCTTG+TGG | + | chr1_1:53732991-53733010 | None:intergenic | 30.0% |
| TCAAGAACATGTGATTGATT+TGG | - | chr1_1:53733040-53733059 | Msa0028700:CDS | 30.0% | |
| !!! | CCTTTTGTTTTTGAAACAAC+AGG | + | chr1_1:53733107-53733126 | None:intergenic | 30.0% |
| !! | CCTGTTGTTTCAAAAACAAA+AGG | - | chr1_1:53733104-53733123 | Msa0028700:CDS | 30.0% |
| TACTTATTAGGAGATTGAGA+AGG | + | chr1_1:53733266-53733285 | None:intergenic | 30.0% | |
| GTCATCTTGAAATAGTGAAT+TGG | - | chr1_1:53733390-53733409 | Msa0028700:CDS | 30.0% | |
| AGTGAATTAGACAGATGAAT+TGG | - | chr1_1:53733481-53733500 | Msa0028700:CDS | 30.0% | |
| TAAGCAATGATGCTAGTGAT+TGG | - | chr1_1:53731148-53731167 | Msa0028700:three_prime_UTR | 35.0% | |
| CTCAAGTCACTAACATTGAT+GGG | - | chr1_1:53731178-53731197 | Msa0028700:three_prime_UTR | 35.0% | |
| !! | ATGTTATTGACTTGAGGCAA+GGG | + | chr1_1:53731282-53731301 | None:intergenic | 35.0% |
| !! | AATGTTATTGACTTGAGGCA+AGG | + | chr1_1:53731283-53731302 | None:intergenic | 35.0% |
| CTGTTGAAGTGGAAAATCAA+AGG | - | chr1_1:53731511-53731530 | Msa0028700:CDS | 35.0% | |
| ATGTGATTGTAGTGCAAAGA+TGG | - | chr1_1:53731551-53731570 | Msa0028700:CDS | 35.0% | |
| TAAGAGAAGAATTGGCATTG+AGG | - | chr1_1:53731581-53731600 | Msa0028700:CDS | 35.0% | |
| ! | GAATTGGCATTGAGGAAAAA+TGG | - | chr1_1:53731589-53731608 | Msa0028700:CDS | 35.0% |
| ATTGGAATGTTACGATAAGC+AGG | + | chr1_1:53731681-53731700 | None:intergenic | 35.0% | |
| ATGCGATCTTGATCAACAAT+TGG | + | chr1_1:53731699-53731718 | None:intergenic | 35.0% | |
| AAGTTTGAAAGATCGAGATG+AGG | - | chr1_1:53731896-53731915 | Msa0028700:CDS | 35.0% | |
| ! | ATTCGTGCATATGAAGCTTT+TGG | - | chr1_1:53731990-53732009 | Msa0028700:CDS | 35.0% |
| CGAAATGAGAAGATTTCTTC+AGG | - | chr1_1:53732128-53732147 | Msa0028700:CDS | 35.0% | |
| ! | CAGATGATTTTGAACGAGAA+TGG | - | chr1_1:53732169-53732188 | Msa0028700:CDS | 35.0% |
| TGAACGAGAATGGAAAGTAA+TGG | - | chr1_1:53732179-53732198 | Msa0028700:CDS | 35.0% | |
| AAAGTAATGGTCTCACAGTT+TGG | - | chr1_1:53732192-53732211 | Msa0028700:CDS | 35.0% | |
| TAAGGCCCAAAATTTACGAT+GGG | + | chr1_1:53732253-53732272 | None:intergenic | 35.0% | |
| GGAAAATGTGTTGTAATCTG+AGG | + | chr1_1:53732540-53732559 | None:intergenic | 35.0% | |
| ! | TGAAGCAACTTAAAGGCATA+AGG | + | chr1_1:53732594-53732613 | None:intergenic | 35.0% |
| CTCATGTTGAAGCAACTTAA+AGG | + | chr1_1:53732601-53732620 | None:intergenic | 35.0% | |
| CAACATCATACCAAAGTTGA+TGG | - | chr1_1:53732678-53732697 | Msa0028700:intron | 35.0% | |
| TAGAGACTGAAATTTAGCAG+AGG | + | chr1_1:53732916-53732935 | None:intergenic | 35.0% | |
| TCAGTCTCTAATTCGATGTT+TGG | - | chr1_1:53732926-53732945 | Msa0028700:CDS | 35.0% | |
| ATCACATGTTCTTGAGTTTC+AGG | + | chr1_1:53733035-53733054 | None:intergenic | 35.0% | |
| !! | ACATGTGATTGATTTGGAAG+AGG | - | chr1_1:53733046-53733065 | Msa0028700:CDS | 35.0% |
| TGCTTTGATAGGATCATGAA+GGG | - | chr1_1:53733358-53733377 | Msa0028700:CDS | 35.0% | |
| TAGTTTGATCAAAGCAGCTT+CGG | + | chr1_1:53733507-53733526 | None:intergenic | 35.0% | |
| ATGTTAGTGACTTGAGGCAA+GGG | + | chr1_1:53731174-53731193 | None:intergenic | 40.0% | |
| AATGTTAGTGACTTGAGGCA+AGG | + | chr1_1:53731175-53731194 | None:intergenic | 40.0% | |
| CCATCAATGTTAGTGACTTG+AGG | + | chr1_1:53731180-53731199 | None:intergenic | 40.0% | |
| CCTCAAGTCACTAACATTGA+TGG | - | chr1_1:53731177-53731196 | Msa0028700:three_prime_UTR | 40.0% | |
| AAGTCACTAACATTGATGGG+TGG | - | chr1_1:53731181-53731200 | Msa0028700:three_prime_UTR | 40.0% | |
| ! | AGTCACTAACATTGATGGGT+GGG | - | chr1_1:53731182-53731201 | Msa0028700:three_prime_UTR | 40.0% |
| ! | ATGAGGGGATTCCTTTTGAA+GGG | - | chr1_1:53731304-53731323 | Msa0028700:three_prime_UTR | 40.0% |
| TGTGTCTGAAGAGAATCCAT+CGG | - | chr1_1:53731431-53731450 | Msa0028700:intron | 40.0% | |
| ATCCATCGGGTGTTTATAAG+AGG | - | chr1_1:53731445-53731464 | Msa0028700:intron | 40.0% | |
| TCCATCGGGTGTTTATAAGA+GGG | - | chr1_1:53731446-53731465 | Msa0028700:intron | 40.0% | |
| ! | AGGGAATTTGTTTGTCATCG+TGG | - | chr1_1:53731465-53731484 | Msa0028700:intron | 40.0% |
| ! | GAATTTGTTTGTCATCGTGG+TGG | - | chr1_1:53731468-53731487 | Msa0028700:intron | 40.0% |
| CTTTGTCATCCAATAACTCG+CGG | + | chr1_1:53731644-53731663 | None:intergenic | 40.0% | |
| CGAGTTATTGGATGACAAAG+AGG | - | chr1_1:53731644-53731663 | Msa0028700:CDS | 40.0% | |
| TATAAGACTTACAGGGCAAC+CGG | + | chr1_1:53731739-53731758 | None:intergenic | 40.0% | |
| CTCTCGCTATAAGACTTACA+GGG | + | chr1_1:53731746-53731765 | None:intergenic | 40.0% | |
| ACTCTCGCTATAAGACTTAC+AGG | + | chr1_1:53731747-53731766 | None:intergenic | 40.0% | |
| GAGCATATTGTTTGGGCATT+TGG | - | chr1_1:53731960-53731979 | Msa0028700:CDS | 40.0% | |
| !! | TTCCAAGAGGCATCTCATAA+CGG | + | chr1_1:53732052-53732071 | None:intergenic | 40.0% |
| ATGAGATGCCTCTTGGAATA+TGG | - | chr1_1:53732054-53732073 | Msa0028700:CDS | 40.0% | |
| TGAGATGCCTCTTGGAATAT+GGG | - | chr1_1:53732055-53732074 | Msa0028700:CDS | 40.0% | |
| !! | TGGGTTGGTGTTGATAATCA+TGG | - | chr1_1:53732074-53732093 | Msa0028700:CDS | 40.0% |
| AATGGTCTCACAGTTTGGTT+TGG | - | chr1_1:53732197-53732216 | Msa0028700:CDS | 40.0% | |
| ! | ATGGTCTCACAGTTTGGTTT+GGG | - | chr1_1:53732198-53732217 | Msa0028700:CDS | 40.0% |
| CTAAGGCCCAAAATTTACGA+TGG | + | chr1_1:53732254-53732273 | None:intergenic | 40.0% | |
| TTGGGCCTTAGCTTATTTGA+AGG | - | chr1_1:53732263-53732282 | Msa0028700:CDS | 40.0% | |
| TTTGCTGGAATGACAACAAC+AGG | - | chr1_1:53732294-53732313 | Msa0028700:CDS | 40.0% | |
| TAGAAATCAAGCTGGAGAAG+AGG | - | chr1_1:53732488-53732507 | Msa0028700:intron | 40.0% | |
| ATAAGGTGTGAGTATAGACG+AGG | + | chr1_1:53732577-53732596 | None:intergenic | 40.0% | |
| TTGCACAACATAAGAGCCAT+TGG | + | chr1_1:53732661-53732680 | None:intergenic | 40.0% | |
| !! | CATCATACCAAAGTTGATGG+TGG | - | chr1_1:53732681-53732700 | Msa0028700:intron | 40.0% |
| TATACGACCACCATCAACTT+TGG | + | chr1_1:53732691-53732710 | None:intergenic | 40.0% | |
| AAAGACAAGTGAACGAGAAC+AGG | - | chr1_1:53732962-53732981 | Msa0028700:CDS | 40.0% | |
| AAAACAAAAGGTCGGCCAAA+AGG | - | chr1_1:53733116-53733135 | Msa0028700:CDS | 40.0% | |
| !!! | CCTTTTGGTCTTGATCCTTT+TGG | + | chr1_1:53733134-53733153 | None:intergenic | 40.0% |
| CCAAAAGGATCAAGACCAAA+AGG | - | chr1_1:53733131-53733150 | Msa0028700:CDS | 40.0% | |
| AAAGGATCAAGACCAAAAGG+AGG | - | chr1_1:53733134-53733153 | Msa0028700:CDS | 40.0% | |
| AAGGATCAAGACCAAAAGGA+GGG | - | chr1_1:53733135-53733154 | Msa0028700:CDS | 40.0% | |
| ! | TGATTAGTTCCACCACAATC+TGG | + | chr1_1:53733197-53733216 | None:intergenic | 40.0% |
| GTGCTTTGATAGGATCATGA+AGG | - | chr1_1:53733357-53733376 | Msa0028700:CDS | 40.0% | |
| TTGATAGGATCATGAAGGGT+TGG | - | chr1_1:53733362-53733381 | Msa0028700:CDS | 40.0% | |
| !! | ATGGGTGGGTTCCTTTTGAA+GGG | - | chr1_1:53731196-53731215 | Msa0028700:three_prime_UTR | 45.0% |
| ! | GATGAGGGGATTCCTTTTGA+AGG | - | chr1_1:53731303-53731322 | Msa0028700:three_prime_UTR | 45.0% |
| GTGTCTGAAGAGAATCCATC+GGG | - | chr1_1:53731432-53731451 | Msa0028700:intron | 45.0% | |
| TCCCTCTTATAAACACCCGA+TGG | + | chr1_1:53731450-53731469 | None:intergenic | 45.0% | |
| GTTTGTCATCGTGGTGGTAT+TGG | - | chr1_1:53731474-53731493 | Msa0028700:intron | 45.0% | |
| ACCACGCAAAACTGTTGAAG+TGG | - | chr1_1:53731500-53731519 | Msa0028700:intron | 45.0% | |
| ! | TCCACTTCAACAGTTTTGCG+TGG | + | chr1_1:53731504-53731523 | None:intergenic | 45.0% |
| ! | TGGCATTGAGGAAAAATGGG+TGG | - | chr1_1:53731593-53731612 | Msa0028700:CDS | 45.0% |
| TTCTCACAACCGCGAGTTAT+TGG | - | chr1_1:53731632-53731651 | Msa0028700:CDS | 45.0% | |
| AACCGTTATGAGATGCCTCT+TGG | - | chr1_1:53732047-53732066 | Msa0028700:CDS | 45.0% | |
| ATGCCTCTTGGAATATGGGT+TGG | - | chr1_1:53732059-53732078 | Msa0028700:CDS | 45.0% | |
| ACACCAACCCATATTCCAAG+AGG | + | chr1_1:53732065-53732084 | None:intergenic | 45.0% | |
| GACGAGGCATGTTCTTCAAT+AGG | + | chr1_1:53732561-53732580 | None:intergenic | 45.0% | |
| CTTTCTCGTCTCCATCGAAA+AGG | + | chr1_1:53732846-53732865 | None:intergenic | 45.0% | |
| AACGTCACAGTCAGCATTGT+TGG | + | chr1_1:53733078-53733097 | None:intergenic | 45.0% | |
| AGGATCAAGACCAAAAGGAG+GGG | - | chr1_1:53733136-53733155 | Msa0028700:CDS | 45.0% | |
| ATGACAACGAAGAGGCTTCT+TGG | + | chr1_1:53733171-53733190 | None:intergenic | 45.0% | |
| ! | TCTGGAACATGACAACGAAG+AGG | + | chr1_1:53733179-53733198 | None:intergenic | 45.0% |
| CGTTGTCATGTTCCAGATTG+TGG | - | chr1_1:53733182-53733201 | Msa0028700:CDS | 45.0% | |
| TGTCATGTTCCAGATTGTGG+TGG | - | chr1_1:53733185-53733204 | Msa0028700:CDS | 45.0% | |
| !! | GATGGGTGGGTTCCTTTTGA+AGG | - | chr1_1:53731195-53731214 | Msa0028700:three_prime_UTR | 50.0% |
| !! | CTCACAGTTTGGTTTGGGTG+TGG | - | chr1_1:53732203-53732222 | Msa0028700:CDS | 50.0% |
| GCAGCAATTGAAGCTGCCAA+TGG | - | chr1_1:53732642-53732661 | Msa0028700:intron | 50.0% | |
| ! | GCAGCTTCAACCCCTCCTTT+TGG | + | chr1_1:53733149-53733168 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 53731135 | 53733652 | 53731135 | ID=Msa0028700;Name=Msa0028700 |
| chr1_1 | mRNA | 53731135 | 53733652 | 53731135 | ID=Msa0028700-mRNA-1;Parent=Msa0028700;Name=Msa0028700-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.5|0.66|1|1|1|3|262|592 |
| chr1_1 | exon | 53731135 | 53731418 | 53731135 | ID=Msa0028700-mRNA-1:exon:15878;Parent=Msa0028700-mRNA-1 |
| chr1_1 | exon | 53731505 | 53732319 | 53731505 | ID=Msa0028700-mRNA-1:exon:15877;Parent=Msa0028700-mRNA-1 |
| chr1_1 | exon | 53732711 | 53733652 | 53732711 | ID=Msa0028700-mRNA-1:exon:15876;Parent=Msa0028700-mRNA-1 |
| chr1_1 | CDS | 53732711 | 53733652 | 53732711 | ID=Msa0028700-mRNA-1:cds;Parent=Msa0028700-mRNA-1 |
| chr1_1 | CDS | 53731505 | 53732319 | 53731505 | ID=Msa0028700-mRNA-1:cds;Parent=Msa0028700-mRNA-1 |
| chr1_1 | CDS | 53731397 | 53731418 | 53731397 | ID=Msa0028700-mRNA-1:cds;Parent=Msa0028700-mRNA-1 |
| chr1_1 | three_prime_UTR | 53731135 | 53731396 | 53731135 | ID=Msa0028700-mRNA-1:three_prime_utr;Parent=Msa0028700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
