AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0945970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945970 MtrunA17_Chr5g0426721 88.028 142 17 0 45 186 166 307 3.79e-67 208
Msa0945970 MtrunA17_Chr5g0426721 83.333 42 7 0 1 42 201 242 2.27e-15 72.8
Msa0945970 MtrunA17_Chr5g0426661 85.437 103 15 0 84 186 46 148 4.38e-39 131
Msa0945970 MtrunA17_Chr5g0426661 85.714 35 5 0 5 39 46 80 1.67e-11 60.1
Msa0945970 MtrunA17_Chr3g0132461 50.000 176 53 1 44 184 152 327 4.02e-38 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945970 AT4G09060.1 46.377 138 69 3 44 179 182 316 2.08e-22 92.4
Msa0945970 AT4G09060.2 46.377 138 69 3 44 179 208 342 3.98e-22 92.0
Msa0945970 AT1G14680.1 41.727 139 67 4 45 179 155 283 4.65e-20 85.5

Find 51 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGGAATCCATTACCATTT+AGG 0.208076 6_3:-26035417 None:intergenic
GTCTTCTACATATGAATTCT+TGG 0.213648 6_3:-26037801 Msa0945970:five_prime_UTR
GTCTTCTACATATGGATTCT+TGG 0.262711 6_3:-26036839 Msa0945970:CDS
TGAAAATAGCATATTGAAAA+AGG 0.281164 6_3:-26035943 Msa0945970:CDS
AAGTTTGCTCGACTCTCTTT+TGG 0.304400 6_3:-26037846 Msa0945970:five_prime_UTR
TTCTCTCTAATCTCGAAATA+TGG 0.313078 6_3:-26037977 Msa0945970:five_prime_UTR
AAAAGGACAAAGAGCATCTA+AGG 0.339255 6_3:-26036098 Msa0945970:CDS
AAAAGGACAAAGAGCATCTA+AGG 0.339255 6_3:-26036945 Msa0945970:CDS
TACCTTGGCAGATGTACTAT+TGG 0.369909 6_3:+26035857 None:intergenic
TCTCACAAGTGTTAATCATT+TGG 0.383225 6_3:-26037945 Msa0945970:five_prime_UTR
GAAAGGATTCATACAGAATC+TGG 0.394294 6_3:-26035891 Msa0945970:CDS
CGCTATCGAGCTACTTGTCT+TGG 0.395328 6_3:+26035718 None:intergenic
TACTAAGGTTGACTCTTCTT+CGG 0.416932 6_3:-26037888 Msa0945970:five_prime_UTR
GATACATTCCTAAATGGTAA+TGG 0.418421 6_3:+26035409 None:intergenic
CGAGCTACTTGTCTTGGAAC+TGG 0.447822 6_3:+26035724 None:intergenic
TCTTCTTCGGCAAGCACACA+TGG 0.474846 6_3:-26037875 Msa0945970:five_prime_UTR
TGAATTGATGTCTCTAGAAA+AGG 0.480662 6_3:-26036115 Msa0945970:CDS
TGAATTGATGTCTCTAGAAA+AGG 0.480662 6_3:-26036962 Msa0945970:CDS
TATTTCGAGATTAGAGAGAA+AGG 0.492605 6_3:+26037980 None:intergenic
AAAGACGAGTCTTCTACATA+TGG 0.492701 6_3:-26036847 Msa0945970:CDS
AAGTAGCTCGATAGCGAAGA+AGG 0.494411 6_3:-26035711 Msa0945970:CDS
AGCTGCTGTCAATGTGGAGC+GGG 0.505097 6_3:-26036786 Msa0945970:intron
ATTTCGAGATTAGAGAGAAA+GGG 0.525009 6_3:+26037981 None:intergenic
ATGGTGGTGACGACATGTGC+AGG 0.538649 6_3:+26035652 None:intergenic
TTGGCAGATGTACTATTGGT+AGG 0.541731 6_3:+26035861 None:intergenic
AAATATAGTAACTGTGTCAA+AGG 0.542852 6_3:+26035564 None:intergenic
AATCATTCCCTGCACTGCAT+AGG 0.546035 6_3:+26035472 None:intergenic
TAAGCTCGAAAGAGCTGAAG+AGG 0.554165 6_3:-26036920 Msa0945970:CDS
TAGTGATGAAATACATGGAA+AGG 0.556765 6_3:-26035908 Msa0945970:CDS
TGACCTCCTTGACTCTCTTG+TGG 0.562654 6_3:-26036884 Msa0945970:CDS
GCTCGAAAGAGCTGAAGAGG+AGG 0.578578 6_3:-26036917 Msa0945970:CDS
CCTCCTCTTCAGCTTTGTCG+AGG 0.580231 6_3:+26036070 None:intergenic
TTCGGCAAGCACACATGGGG+AGG 0.585493 6_3:-26037870 Msa0945970:five_prime_UTR
TAACCTCGACAAAGCTGAAG+AGG 0.588349 6_3:-26036073 Msa0945970:CDS
TCTAATCTCGAAATATGGCT+AGG 0.598194 6_3:-26037972 Msa0945970:five_prime_UTR
AAAGAGCTGAAGAGGAGGTG+AGG 0.606699 6_3:-26036912 Msa0945970:CDS
CTTCTTCGGCAAGCACACAT+GGG 0.608450 6_3:-26037874 Msa0945970:five_prime_UTR
AGGATTCATACAGAATCTGG+TGG 0.609008 6_3:-26035888 Msa0945970:CDS
TACCAATAGTACATCTGCCA+AGG 0.617685 6_3:-26035859 Msa0945970:intron
AAGGTTAGTGATGAAATACA+TGG 0.623151 6_3:-26035913 Msa0945970:CDS
TTCTTCGGCAAGCACACATG+GGG 0.642508 6_3:-26037873 Msa0945970:five_prime_UTR
GTAGCTTAAAACAATCAACT+CGG 0.647486 6_3:-26037005 Msa0945970:intron
AAGAAGATGAATCTAGACAA+TGG 0.648894 6_3:+26035633 None:intergenic
CCTCGACAAAGCTGAAGAGG+AGG 0.650548 6_3:-26036070 Msa0945970:intron
AAGCTGCTGTCAATGTGGAG+CGG 0.655453 6_3:-26036787 Msa0945970:CDS
GGATTCATACAGAATCTGGT+GGG 0.658187 6_3:-26035887 Msa0945970:CDS
AATCTCGAAATATGGCTAGG+TGG 0.681992 6_3:-26037969 Msa0945970:five_prime_UTR
CTGCTGCCACAAGAGAGTCA+AGG 0.705247 6_3:+26036878 None:intergenic
CTGCCACAAGAGAGTCAAGG+AGG 0.721597 6_3:+26036881 None:intergenic
TGGTGGTGACGACATGTGCA+GGG 0.722428 6_3:+26035653 None:intergenic
AAGATGAATCTAGACAATGG+TGG 0.726175 6_3:+26035636 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTACTTTATTTTACTA+AGG - chr6_3:26035516-26035535 Msa0945970:three_prime_UTR 10.0%
!!! TAATTTTTCAAAATAAATTG+AGG - chr6_3:26037984-26038003 Msa0945970:five_prime_UTR 10.0%
!!! GTTTTTTCTATTATAGAAAT+AGG + chr6_3:26036032-26036051 None:intergenic 15.0%
!!! TTTACAGTTTTTGAATTATA+TGG - chr6_3:26037405-26037424 Msa0945970:intron 15.0%
!! AATGCAATTAATTACTTAAA+AGG + chr6_3:26037653-26037672 None:intergenic 15.0%
!! TAACAAATGTTGTAAAATTG+TGG - chr6_3:26036760-26036779 Msa0945970:intron 20.0%
!!! CAGTTTTCTATTATAGAAAT+AGG + chr6_3:26036999-26037018 None:intergenic 20.0%
!! ATTGAAAGATTTACGTATTA+TGG + chr6_3:26037052-26037071 None:intergenic 20.0%
!! TGAAAATAGCATATTGAAAA+AGG - chr6_3:26037476-26037495 Msa0945970:intron 20.0%
!!! TTTGTTATTTGTCTAGAACA+TGG + chr6_3:26036747-26036766 None:intergenic 25.0%
! TTGTAAAATTGTGGTGATAA+CGG - chr6_3:26036769-26036788 Msa0945970:intron 25.0%
! ACTATAGCATTATAATCTAG+TGG - chr6_3:26036793-26036812 Msa0945970:CDS 25.0%
! CTATAGCATTATAATCTAGT+GGG - chr6_3:26036794-26036813 Msa0945970:CDS 25.0%
! GCAATTAATTACTTAAAAGG+AGG + chr6_3:26037650-26037669 None:intergenic 25.0%
! AAATATAGTAACTGTGTCAA+AGG + chr6_3:26037858-26037877 None:intergenic 25.0%
!!! TATTTTTCATTTGCTGAAGT+TGG - chr6_3:26037873-26037892 Msa0945970:five_prime_UTR 25.0%
! TTAAAACCATGAAAAAACAG+TGG - chr6_3:26037905-26037924 Msa0945970:five_prime_UTR 25.0%
! TAAAACCATGAAAAAACAGT+GGG - chr6_3:26037906-26037925 Msa0945970:five_prime_UTR 25.0%
ATTTCGAGATTAGAGAGAAA+GGG + chr6_3:26035441-26035460 None:intergenic 30.0%
TATTTCGAGATTAGAGAGAA+AGG + chr6_3:26035442-26035461 None:intergenic 30.0%
TTCTCTCTAATCTCGAAATA+TGG - chr6_3:26035442-26035461 Msa0945970:three_prime_UTR 30.0%
TCTCACAAGTGTTAATCATT+TGG - chr6_3:26035474-26035493 Msa0945970:three_prime_UTR 30.0%
GTCTTCTACATATGAATTCT+TGG - chr6_3:26035618-26035637 Msa0945970:three_prime_UTR 30.0%
! CTGGTTAATTGTCTAGAATA+TGG + chr6_3:26035785-26035804 None:intergenic 30.0%
TAACCAGTGTTGTAAAATTG+TGG - chr6_3:26035798-26035817 Msa0945970:intron 30.0%
TGATGCACACAAATACAAAA+GGG + chr6_3:26036135-26036154 None:intergenic 30.0%
ATGATGCACACAAATACAAA+AGG + chr6_3:26036136-26036155 None:intergenic 30.0%
TAGCATATAGAGGAAAATAG+CGG + chr6_3:26036264-26036283 None:intergenic 30.0%
GTGTTATCAATAGCATATAG+AGG + chr6_3:26036274-26036293 None:intergenic 30.0%
CAAAATCCAGATGATAATCA+GGG + chr6_3:26036395-26036414 None:intergenic 30.0%
ACAAAATCCAGATGATAATC+AGG + chr6_3:26036396-26036415 None:intergenic 30.0%
GTAGCTTAAAACAATCAACT+CGG - chr6_3:26036414-26036433 Msa0945970:intron 30.0%
! TGAATTGATGTCTCTAGAAA+AGG - chr6_3:26036457-26036476 Msa0945970:intron 30.0%
ATGGCATCAGAGATAAAAAT+TGG + chr6_3:26035766-26035785 None:intergenic 30.0%
TAGCATATTGTGGAAAATAG+CGG + chr6_3:26037156-26037175 None:intergenic 30.0%
GTGTTATCAATAGCATATTG+TGG + chr6_3:26037166-26037185 None:intergenic 30.0%
TGATAACACTGCAGTTAAAA+TGG - chr6_3:26037177-26037196 Msa0945970:intron 30.0%
GATAACACTGCAGTTAAAAT+GGG - chr6_3:26037178-26037197 Msa0945970:intron 30.0%
CAGAATGCAAATGATAATCA+GGG + chr6_3:26037242-26037261 None:intergenic 30.0%
ACAGAATGCAAATGATAATC+AGG + chr6_3:26037243-26037262 None:intergenic 30.0%
! TGAATTGATGTCTCTAGAAA+AGG - chr6_3:26036457-26036476 Msa0945970:intron 30.0%
TAAAAAGTCGACAGTAAAAG+GGG + chr6_3:26037389-26037408 None:intergenic 30.0%
GTAAAAAGTCGACAGTAAAA+GGG + chr6_3:26037390-26037409 None:intergenic 30.0%
TGTAAAAAGTCGACAGTAAA+AGG + chr6_3:26037391-26037410 None:intergenic 30.0%
ATTATATGGAATGACTGACT+TGG - chr6_3:26037419-26037438 Msa0945970:intron 30.0%
TATTGAAAAAGGAGAACAGA+AGG - chr6_3:26037487-26037506 Msa0945970:intron 30.0%
AAGGTTAGTGATGAAATACA+TGG - chr6_3:26037506-26037525 Msa0945970:intron 30.0%
TAGTGATGAAATACATGGAA+AGG - chr6_3:26037511-26037530 Msa0945970:intron 30.0%
AAGAAGATGAATCTAGACAA+TGG + chr6_3:26037789-26037808 None:intergenic 30.0%
TCTAATCTCGAAATATGGCT+AGG - chr6_3:26035447-26035466 Msa0945970:three_prime_UTR 35.0%
! TACTAAGGTTGACTCTTCTT+CGG - chr6_3:26035531-26035550 Msa0945970:three_prime_UTR 35.0%
! TCACCACAATTTTACAACAC+TGG + chr6_3:26035804-26035823 None:intergenic 35.0%
ACTATAGCGCTATAATCTAG+CGG - chr6_3:26035831-26035850 Msa0945970:intron 35.0%
ATTGCCCTAATAGAGAAACT+AGG + chr6_3:26035893-26035912 None:intergenic 35.0%
TTTCTCTATTAGGGCAATAG+CGG - chr6_3:26035895-26035914 Msa0945970:CDS 35.0%
ACAAATACAAAAGGGAATGG+AGG + chr6_3:26036127-26036146 None:intergenic 35.0%
CACACAAATACAAAAGGGAA+TGG + chr6_3:26036130-26036149 None:intergenic 35.0%
! TAAATCACACCGTGGATTTT+AGG - chr6_3:26036234-26036253 Msa0945970:intron 35.0%
AACACTGCACTAAACATGTA+AGG - chr6_3:26036289-26036308 Msa0945970:intron 35.0%
TTAGAACCCTGATTATCATC+TGG - chr6_3:26036386-26036405 Msa0945970:intron 35.0%
!! AAAAGGACAAAGAGCATCTA+AGG - chr6_3:26036474-26036493 Msa0945970:intron 35.0%
AAAGACGAGTCTTCTACATA+TGG - chr6_3:26036572-26036591 Msa0945970:intron 35.0%
GTCTTCTACATATGGATTCT+TGG - chr6_3:26036580-26036599 Msa0945970:intron 35.0%
AAACTTGACAAGAGAGTAAG+AGG + chr6_3:26036680-26036699 None:intergenic 35.0%
TTCCTAGTTTCTCCTCTATT+AGG - chr6_3:26036850-26036869 Msa0945970:CDS 35.0%
AGCGGAAAAATGAGAATCTT+AGG - chr6_3:26036921-26036940 Msa0945970:CDS 35.0%
GCGGAAAAATGAGAATCTTA+GGG - chr6_3:26036922-26036941 Msa0945970:CDS 35.0%
CGGAAAAATGAGAATCTTAG+GGG - chr6_3:26036923-26036942 Msa0945970:CDS 35.0%
!! AAAAGGACAAAGAGCATCTA+AGG - chr6_3:26036474-26036493 Msa0945970:intron 35.0%
AAAAAGTCGACAGTAAAAGG+GGG + chr6_3:26037388-26037407 None:intergenic 35.0%
GAAAGGATTCATACAGAATC+TGG - chr6_3:26037528-26037547 Msa0945970:intron 35.0%
AAGATGAATCTAGACAATGG+TGG + chr6_3:26037786-26037805 None:intergenic 35.0%
!!! TAACACCCACTGTTTTTTCA+TGG + chr6_3:26037914-26037933 None:intergenic 35.0%
AATCTCGAAATATGGCTAGG+TGG - chr6_3:26035450-26035469 Msa0945970:three_prime_UTR 40.0%
!! AAGTTTGCTCGACTCTCTTT+TGG - chr6_3:26035573-26035592 Msa0945970:three_prime_UTR 40.0%
GTAAAAAGCTGCTGTCAATG+TGG - chr6_3:26035665-26035684 Msa0945970:exon 40.0%
GCTAGATTATAGCGCTATAG+TGG + chr6_3:26035832-26035851 None:intergenic 40.0%
CTATAGCGCTATAATCTAGC+GGG - chr6_3:26035832-26035851 Msa0945970:intron 40.0%
ACCGTCCTAGTTTCTCTATT+AGG - chr6_3:26035885-26035904 Msa0945970:CDS 40.0%
CCCTAATAGAGAAACTAGGA+CGG + chr6_3:26035889-26035908 None:intergenic 40.0%
CCGTCCTAGTTTCTCTATTA+GGG - chr6_3:26035886-26035905 Msa0945970:CDS 40.0%
TGGATAGCATTGCAGGAAAA+TGG + chr6_3:26036213-26036232 None:intergenic 40.0%
! GATTTAGTGGATAGCATTGC+AGG + chr6_3:26036220-26036239 None:intergenic 40.0%
AAATCCACGGTGTGATTTAG+TGG + chr6_3:26036233-26036252 None:intergenic 40.0%
TGCACTAAACATGTAAGGCT+TGG - chr6_3:26036294-26036313 Msa0945970:intron 40.0%
GCACTAAACATGTAACAGTC+AGG - chr6_3:26036340-26036359 Msa0945970:intron 40.0%
GTAAAAAGCTGCTGTCAATG+TGG - chr6_3:26035665-26035684 Msa0945970:exon 40.0%
GTCCTAATAGAGGAGAAACT+AGG + chr6_3:26036855-26036874 None:intergenic 40.0%
CCTAAAATCCACTATGTGCA+GGG + chr6_3:26037129-26037148 None:intergenic 40.0%
GCAGTTAAAATGGGACAATC+AGG - chr6_3:26037187-26037206 Msa0945970:intron 40.0%
!! TTGGCTTGGTGTAAACCATA+GGG - chr6_3:26037438-26037457 Msa0945970:intron 40.0%
! ACAGAGAGTAGTTTTCCCTA+TGG + chr6_3:26037456-26037475 None:intergenic 40.0%
AGGATTCATACAGAATCTGG+TGG - chr6_3:26037531-26037550 Msa0945970:intron 40.0%
GGATTCATACAGAATCTGGT+GGG - chr6_3:26037532-26037551 Msa0945970:intron 40.0%
TTGGCAGATGTACTATTGGT+AGG + chr6_3:26037561-26037580 None:intergenic 40.0%
TACCAATAGTACATCTGCCA+AGG - chr6_3:26037560-26037579 Msa0945970:intron 40.0%
TACCTTGGCAGATGTACTAT+TGG + chr6_3:26037565-26037584 None:intergenic 40.0%
TCTGCCAAGGTAAGAATCAT+AGG - chr6_3:26037573-26037592 Msa0945970:intron 40.0%
CTGCCAAGGTAAGAATCATA+GGG - chr6_3:26037574-26037593 Msa0945970:intron 40.0%
TGCCAAGGTAAGAATCATAG+GGG - chr6_3:26037575-26037594 Msa0945970:intron 40.0%
TGAAAAACCTATGCAGTGCA+GGG - chr6_3:26037940-26037959 Msa0945970:five_prime_UTR 40.0%
CTATCCACTAAATCACACCG+TGG - chr6_3:26036226-26036245 Msa0945970:intron 45.0%
TAAGCTCGAAAGAGCTGAAG+AGG - chr6_3:26036499-26036518 Msa0945970:intron 45.0%
!! GAGAAACTAGGAAAGTGCTG+TGG + chr6_3:26036843-26036862 None:intergenic 45.0%
CTCCTCTATTAGGACAGTAG+CGG - chr6_3:26036860-26036879 Msa0945970:CDS 45.0%
CTACATCAGCCATCAGAAAC+CGG + chr6_3:26036894-26036913 None:intergenic 45.0%
GGCTGATGTAGCAACAATAG+CGG - chr6_3:26036903-26036922 Msa0945970:CDS 45.0%
!!! CCCTGCACATAGTGGATTTT+AGG - chr6_3:26037126-26037145 Msa0945970:intron 45.0%
GCCTAAAATCCACTATGTGC+AGG + chr6_3:26037130-26037149 None:intergenic 45.0%
TAACCTCGACAAAGCTGAAG+AGG - chr6_3:26037346-26037365 Msa0945970:intron 45.0%
!! ATGGAATGACTGACTTGGCT+TGG - chr6_3:26037424-26037443 Msa0945970:intron 45.0%
!! CTTGGCTTGGTGTAAACCAT+AGG - chr6_3:26037437-26037456 Msa0945970:intron 45.0%
CACCCCTATGATTCTTACCT+TGG + chr6_3:26037580-26037599 None:intergenic 45.0%
AAGTAGCTCGATAGCGAAGA+AGG - chr6_3:26037708-26037727 Msa0945970:intron 45.0%
! CTGCACTGCATAGGTTTTTC+AGG + chr6_3:26037941-26037960 None:intergenic 45.0%
CTGAAAAACCTATGCAGTGC+AGG - chr6_3:26037939-26037958 Msa0945970:five_prime_UTR 45.0%
AATCATTCCCTGCACTGCAT+AGG + chr6_3:26037950-26037969 None:intergenic 45.0%
!! AAAAAAATAATGTAAAAATA+AGG + chr6_3:26035741-26035760 None:intergenic 5.0%
TCTTCTTCGGCAAGCACACA+TGG - chr6_3:26035544-26035563 Msa0945970:three_prime_UTR 50.0%
CTTCTTCGGCAAGCACACAT+GGG - chr6_3:26035545-26035564 Msa0945970:three_prime_UTR 50.0%
TTCTTCGGCAAGCACACATG+GGG - chr6_3:26035546-26035565 Msa0945970:three_prime_UTR 50.0%
CTACATCAGCCAGTAGAAGC+CGG + chr6_3:26035929-26035948 None:intergenic 50.0%
GGCTGATGTAGCAACAGTAG+CGG - chr6_3:26035938-26035957 Msa0945970:CDS 50.0%
AGCGGAACGCCTAAAATCCA+CGG + chr6_3:26036246-26036265 None:intergenic 50.0%
AAAGAGCTGAAGAGGAGGTG+AGG - chr6_3:26036507-26036526 Msa0945970:intron 50.0%
TGACCTCCTTGACTCTCTTG+TGG - chr6_3:26036535-26036554 Msa0945970:intron 50.0%
AAGCTGCTGTCAATGTGGAG+CGG - chr6_3:26035670-26035689 Msa0945970:exon 50.0%
ATCCACTATGTGCAGGGAAG+AGG + chr6_3:26037123-26037142 None:intergenic 50.0%
ACAAAGCTGAAGAGGAGGTG+AGG - chr6_3:26037354-26037373 Msa0945970:intron 50.0%
CGAGCTACTTGTCTTGGAAC+TGG + chr6_3:26037698-26037717 None:intergenic 50.0%
CGCTATCGAGCTACTTGTCT+TGG + chr6_3:26037704-26037723 None:intergenic 50.0%
CTGTCAATGTGGAGCGAGTG+AGG - chr6_3:26035676-26035695 Msa0945970:CDS 55.0%
! GAGAAACTAGGACGGTGTCG+TGG + chr6_3:26035881-26035900 None:intergenic 55.0%
GCTCGAAAGAGCTGAAGAGG+AGG - chr6_3:26036502-26036521 Msa0945970:intron 55.0%
CTGCCACAAGAGAGTCAAGG+AGG + chr6_3:26036541-26036560 None:intergenic 55.0%
CTGCTGCCACAAGAGAGTCA+AGG + chr6_3:26036544-26036563 None:intergenic 55.0%
AGCTGCTGTCAATGTGGAGC+GGG - chr6_3:26035671-26035690 Msa0945970:exon 55.0%
CTGTCAATGTGGAGCGGGTA+AGG - chr6_3:26036638-26036657 Msa0945970:intron 55.0%
GGCCGCTACTGTCCTAATAG+AGG + chr6_3:26036865-26036884 None:intergenic 55.0%
TGCCTCTTCCCTGCACATAG+TGG - chr6_3:26037118-26037137 Msa0945970:intron 55.0%
! CCTCCTCTTCAGCTTTGTCG+AGG + chr6_3:26037352-26037371 None:intergenic 55.0%
CCTCGACAAAGCTGAAGAGG+AGG - chr6_3:26037349-26037368 Msa0945970:intron 55.0%
! TGGTGGTGACGACATGTGCA+GGG + chr6_3:26037769-26037788 None:intergenic 55.0%
! ATGGTGGTGACGACATGTGC+AGG + chr6_3:26037770-26037789 None:intergenic 55.0%
TTCGGCAAGCACACATGGGG+AGG - chr6_3:26035549-26035568 Msa0945970:three_prime_UTR 60.0%
GCCAGTAGAAGCCGGAACAG+CGG + chr6_3:26035921-26035940 None:intergenic 60.0%
GCCACTGCTCCGGTTTCTGA+TGG - chr6_3:26036882-26036901 Msa0945970:CDS 60.0%
GCCATCAGAAACCGGAGCAG+TGG + chr6_3:26036886-26036905 None:intergenic 60.0%
GGCAATAGCGGCCGCTGTTC+CGG - chr6_3:26035907-26035926 Msa0945970:CDS 65.0%
GCCGCTGTTCCGGCTTCTAC+TGG - chr6_3:26035917-26035936 Msa0945970:CDS 65.0%
GACAGTAGCGGCCACTGCTC+CGG - chr6_3:26036872-26036891 Msa0945970:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 26035419 26038022 26035419 ID=Msa0945970;Name=Msa0945970
chr6_3 mRNA 26035419 26038022 26035419 ID=Msa0945970-mRNA-1;Parent=Msa0945970;Name=Msa0945970-mRNA-1;_AED=0.21;_eAED=0.21;_QI=263|1|1|1|1|1|5|257|187
chr6_3 exon 26035419 26035762 26035419 ID=Msa0945970-mRNA-1:exon:7209;Parent=Msa0945970-mRNA-1
chr6_3 exon 26035860 26035982 26035860 ID=Msa0945970-mRNA-1:exon:7208;Parent=Msa0945970-mRNA-1
chr6_3 exon 26036071 26036176 26036071 ID=Msa0945970-mRNA-1:exon:7207;Parent=Msa0945970-mRNA-1
chr6_3 exon 26036787 26037023 26036787 ID=Msa0945970-mRNA-1:exon:7206;Parent=Msa0945970-mRNA-1
chr6_3 exon 26037749 26038022 26037749 ID=Msa0945970-mRNA-1:exon:7205;Parent=Msa0945970-mRNA-1
chr6_3 five_prime_UTR 26037760 26038022 26037760 ID=Msa0945970-mRNA-1:five_prime_utr;Parent=Msa0945970-mRNA-1
chr6_3 CDS 26037749 26037759 26037749 ID=Msa0945970-mRNA-1:cds;Parent=Msa0945970-mRNA-1
chr6_3 CDS 26036787 26037023 26036787 ID=Msa0945970-mRNA-1:cds;Parent=Msa0945970-mRNA-1
chr6_3 CDS 26036071 26036176 26036071 ID=Msa0945970-mRNA-1:cds;Parent=Msa0945970-mRNA-1
chr6_3 CDS 26035860 26035982 26035860 ID=Msa0945970-mRNA-1:cds;Parent=Msa0945970-mRNA-1
chr6_3 CDS 26035676 26035762 26035676 ID=Msa0945970-mRNA-1:cds;Parent=Msa0945970-mRNA-1
chr6_3 three_prime_UTR 26035419 26035675 26035419 ID=Msa0945970-mRNA-1:three_prime_utr;Parent=Msa0945970-mRNA-1
Gene Sequence

>Msa0945970

ATGTGGAGCGACTTAAAACAATCAACTCGGAGAGTATTGTCTCTCGTTGCTGAATTGATGTCTCTAGAAAAGGACAAAGAGCATCTAAGGATTAAGCTCGAAAGAGCTGAAGAGGAGGTGAGGATTGCTGACCTCCTTGACTCTCTTGTGGCAGCAGTTATTACTAAAGACGAGTCTTCTACATATGGATTCTTGGTTGCAAATAGTGAAAATGAGCATTGTAAAAAGCTGCTGTCAATGTGGAGCGGCTTAAAACAATCAACTCAGAGATTATTGTCTCTTGTTGCTGAATTGATGTCTCTAGAAAAGGACAAAGAGCATCTAAGGATTAACCTCGACAAAGCTGAAGAGGAGGGAAAACTACTCTCTGTTGAAAATAGCATATTGAAAAAGGAGAACAGAAGGTTAGTGATGAAATACATGGAAAGGATTCATACAGAATCTGGTGGGAAGCCTACCAATAGTACATCTGCCAAGTCAAACAAGAGAAAGTCCAGTTCCAAGACAAGTAGCTCGATAGCGAAGAAGGTTGATTTTGATGATTTAGATTCACTTGCAAAGTAA

Protein sequence

>Msa0945970

MWSDLKQSTRRVLSLVAELMSLEKDKEHLRIKLERAEEEVRIADLLDSLVAAVITKDESSTYGFLVANSENEHCKKLLSMWSGLKQSTQRLLSLVAELMSLEKDKEHLRINLDKAEEEGKLLSVENSILKKENRRLVMKYMERIHTESGGKPTNSTSAKSNKRKSSSKTSSSIAKKVDFDDLDSLAK*