Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007010 | A0A2K3LJN2 | 65.169 | 89 | 31 | 0 | 12 | 100 | 24 | 112 | 4.65e-30 | 119 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007010 | Msa0149170 | 0.986700 | 1.134126e-167 | -8.615850e-47 |
| Msa0007010 | Msa0452410 | 0.807438 | 5.055579e-50 | -8.615850e-47 |
| Msa0007010 | Msa0458700 | 0.811585 | 6.505103e-51 | -8.615850e-47 |
| Msa0007010 | Msa0484690 | 0.815085 | 1.107412e-51 | -8.615850e-47 |
| Msa0007010 | Msa0584130 | 0.804199 | 2.422726e-49 | -8.615850e-47 |
| Msa0007010 | Msa0607200 | 0.802028 | 6.812526e-49 | -8.615850e-47 |
| Msa0007010 | Msa0871800 | 0.802097 | 6.595713e-49 | -8.615850e-47 |
| Msa0007010 | Msa0898370 | 0.812422 | 4.274354e-51 | -8.615850e-47 |
| Msa0007010 | Msa1002300 | 0.817789 | 2.748326e-52 | -8.615850e-47 |
| Msa0007010 | Msa1198090 | 0.806049 | 9.934217e-50 | -8.615850e-47 |
| Msa0007010 | Msa1312650 | 0.802193 | 6.302021e-49 | -8.615850e-47 |
| Msa0007010 | Msa1374440 | 0.817746 | 2.810462e-52 | -8.615850e-47 |
| Msa0007010 | Msa1384320 | 0.802886 | 4.535300e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 21 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGTTCTTAACCGCATAAA+AGG | 0.320939 | 1_1:+10033698 | Msa0007010:CDS |
| GATTAACACTAGTACTGATT+TGG | 0.322977 | 1_1:-10031596 | None:intergenic |
| CTCTTAAATGCTCAGATAGA+TGG | 0.337672 | 1_1:+10031805 | Msa0007010:CDS |
| CACTGTTGCAGAGTGTTGTT+AGG | 0.389448 | 1_1:-10031776 | None:intergenic |
| CAAAATAGTAGTTTGCTAGT+TGG | 0.415953 | 1_1:-10031737 | None:intergenic |
| AAAAGAACAAACGCAGCAAC+AGG | 0.455703 | 1_1:+10031953 | Msa0007010:CDS |
| GCATTTGTGACAACAAGAAA+GGG | 0.479862 | 1_1:+10033569 | Msa0007010:CDS |
| AGCATTTGTGACAACAAGAA+AGG | 0.501921 | 1_1:+10033568 | Msa0007010:CDS |
| ACACTATCCGAGTTTGTGTA+AGG | 0.524461 | 1_1:-10033340 | None:intergenic |
| TTGAGTCAACTACAATCAAA+CGG | 0.537488 | 1_1:+10031711 | Msa0007010:CDS |
| GACATGGTCGTGACTCAACC+TGG | 0.550958 | 1_1:+10033385 | Msa0007010:CDS |
| GGACTCATCAAGACATGATG+TGG | 0.558796 | 1_1:+10031974 | Msa0007010:CDS |
| ACAAATGTAGTCTGATGTCA+AGG | 0.571319 | 1_1:-10032019 | None:intergenic |
| GACTCATCAAGACATGATGT+GGG | 0.575048 | 1_1:+10031975 | Msa0007010:CDS |
| TAGTCTACCTTACACAAACT+CGG | 0.623075 | 1_1:+10033333 | Msa0007010:CDS |
| CATTTGTGACAACAAGAAAG+GGG | 0.639174 | 1_1:+10033570 | Msa0007010:CDS |
| ATTTGTGACAACAAGAAAGG+GGG | 0.639842 | 1_1:+10033571 | Msa0007010:CDS |
| CTCATCAAGACATGATGTGG+GGG | 0.642481 | 1_1:+10031977 | Msa0007010:CDS |
| GTGTTGTTAGGATGACGCCT+TGG | 0.647288 | 1_1:-10031764 | None:intergenic |
| ACTCATCAAGACATGATGTG+GGG | 0.675389 | 1_1:+10031976 | Msa0007010:CDS |
| ACATCTTAAAGAAAGCGACA+TGG | 0.716213 | 1_1:+10033369 | Msa0007010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCCTAAATTATAAATTATAT+TGG | + | chr1_1:10032184-10032203 | Msa0007010:intron | 10.0% |
| !! | ACCAATATAATTTATAATTT+AGG | - | chr1_1:10032188-10032207 | None:intergenic | 10.0% |
| !! | AAATAAAAGAAAATAGTAAA+TGG | + | chr1_1:10032311-10032330 | Msa0007010:intron | 10.0% |
| !! | TCCTAAATTATAAATTATAT+TGG | + | chr1_1:10032184-10032203 | Msa0007010:intron | 10.0% |
| !! | ACCAATATAATTTATAATTT+AGG | - | chr1_1:10032188-10032207 | None:intergenic | 10.0% |
| !! | AAATAAAAGAAAATAGTAAA+TGG | + | chr1_1:10032311-10032330 | Msa0007010:intron | 10.0% |
| !!! | AAATGTGATTAATTTTGTAT+GGG | + | chr1_1:10032224-10032243 | Msa0007010:intron | 15.0% |
| !! | GATTCATTGATATTATAAAA+CGG | + | chr1_1:10032363-10032382 | Msa0007010:intron | 15.0% |
| !! | TTAGTAAGTGTTTATATAAA+TGG | + | chr1_1:10032669-10032688 | Msa0007010:intron | 15.0% |
| !! | TAGTAAGTGTTTATATAAAT+GGG | + | chr1_1:10032670-10032689 | Msa0007010:intron | 15.0% |
| !! | ATTAAACCATATTTAATTGA+GGG | + | chr1_1:10033225-10033244 | Msa0007010:intron | 15.0% |
| !!! | GTGACATTTTTAAATTTTTA+AGG | + | chr1_1:10033602-10033621 | Msa0007010:intron | 15.0% |
| !!! | CATTTTTAAATTTTTAAGGT+TGG | + | chr1_1:10033606-10033625 | Msa0007010:intron | 15.0% |
| !! | TCAAATAAAAACTAGATAAA+AGG | + | chr1_1:10033646-10033665 | Msa0007010:intron | 15.0% |
| !!! | AAATGTGATTAATTTTGTAT+GGG | + | chr1_1:10032224-10032243 | Msa0007010:intron | 15.0% |
| !! | GATTCATTGATATTATAAAA+CGG | + | chr1_1:10032363-10032382 | Msa0007010:intron | 15.0% |
| !! | TTAGTAAGTGTTTATATAAA+TGG | + | chr1_1:10032669-10032688 | Msa0007010:intron | 15.0% |
| !! | TAGTAAGTGTTTATATAAAT+GGG | + | chr1_1:10032670-10032689 | Msa0007010:intron | 15.0% |
| !! | ATTAAACCATATTTAATTGA+GGG | + | chr1_1:10033225-10033244 | Msa0007010:intron | 15.0% |
| !!! | GTGACATTTTTAAATTTTTA+AGG | + | chr1_1:10033602-10033621 | Msa0007010:intron | 15.0% |
| !!! | CATTTTTAAATTTTTAAGGT+TGG | + | chr1_1:10033606-10033625 | Msa0007010:intron | 15.0% |
| !! | TCAAATAAAAACTAGATAAA+AGG | + | chr1_1:10033646-10033665 | Msa0007010:intron | 15.0% |
| !!! | AGACTACATTTGTTTTATTT+TGG | + | chr1_1:10032029-10032048 | Msa0007010:CDS | 20.0% |
| !!! | TGATATAAGTCTTACTTTTT+GGG | - | chr1_1:10032137-10032156 | None:intergenic | 20.0% |
| !!! | ATGATATAAGTCTTACTTTT+TGG | - | chr1_1:10032138-10032157 | None:intergenic | 20.0% |
| !! | AAAAAGTAAGACTTATATCA+TGG | + | chr1_1:10032137-10032156 | Msa0007010:intron | 20.0% |
| !! | AAAAGTAAGACTTATATCAT+GGG | + | chr1_1:10032138-10032157 | Msa0007010:intron | 20.0% |
| !!! | GAAATGTGATTAATTTTGTA+TGG | + | chr1_1:10032223-10032242 | Msa0007010:intron | 20.0% |
| !! | AAGAAAATAGTAAATGGTTA+AGG | + | chr1_1:10032317-10032336 | Msa0007010:intron | 20.0% |
| !! | AGAAAATAGTAAATGGTTAA+GGG | + | chr1_1:10032318-10032337 | Msa0007010:intron | 20.0% |
| !! | AGTAAGTGTTTATATAAATG+GGG | + | chr1_1:10032671-10032690 | Msa0007010:intron | 20.0% |
| !! | ATATGGTTTAATCAATCATT+CGG | - | chr1_1:10033217-10033236 | None:intergenic | 20.0% |
| !! | GATTAAACCATATTTAATTG+AGG | + | chr1_1:10033224-10033243 | Msa0007010:intron | 20.0% |
| !!! | AGACTACATTTGTTTTATTT+TGG | + | chr1_1:10032029-10032048 | Msa0007010:CDS | 20.0% |
| !!! | TGATATAAGTCTTACTTTTT+GGG | - | chr1_1:10032137-10032156 | None:intergenic | 20.0% |
| !!! | ATGATATAAGTCTTACTTTT+TGG | - | chr1_1:10032138-10032157 | None:intergenic | 20.0% |
| !! | AAAAAGTAAGACTTATATCA+TGG | + | chr1_1:10032137-10032156 | Msa0007010:intron | 20.0% |
| !! | AAAAGTAAGACTTATATCAT+GGG | + | chr1_1:10032138-10032157 | Msa0007010:intron | 20.0% |
| !!! | GAAATGTGATTAATTTTGTA+TGG | + | chr1_1:10032223-10032242 | Msa0007010:intron | 20.0% |
| !! | AAGAAAATAGTAAATGGTTA+AGG | + | chr1_1:10032317-10032336 | Msa0007010:intron | 20.0% |
| !! | AGAAAATAGTAAATGGTTAA+GGG | + | chr1_1:10032318-10032337 | Msa0007010:intron | 20.0% |
| !! | AGTAAGTGTTTATATAAATG+GGG | + | chr1_1:10032671-10032690 | Msa0007010:intron | 20.0% |
| !! | ATATGGTTTAATCAATCATT+CGG | - | chr1_1:10033217-10033236 | None:intergenic | 20.0% |
| !! | GATTAAACCATATTTAATTG+AGG | + | chr1_1:10033224-10033243 | Msa0007010:intron | 20.0% |
| !!! | AACTACTATTTTGTTTTCCA+AGG | + | chr1_1:10031747-10031766 | Msa0007010:CDS | 25.0% |
| !! | CTATCTTTTGTAAGTACAAT+CGG | + | chr1_1:10031883-10031902 | Msa0007010:CDS | 25.0% |
| !! | AACAAACTTTGAGAAACTTA+TGG | - | chr1_1:10032498-10032517 | None:intergenic | 25.0% |
| ! | GTAAGTGTTTATATAAATGG+GGG | + | chr1_1:10032672-10032691 | Msa0007010:intron | 25.0% |
| ! | ATAACACCCTCAATTAAATA+TGG | - | chr1_1:10033234-10033253 | None:intergenic | 25.0% |
| !!! | TTTTTGTTGTTTCTCAAGTT+CGG | - | chr1_1:10033454-10033473 | None:intergenic | 25.0% |
| !!! | AACTACTATTTTGTTTTCCA+AGG | + | chr1_1:10031747-10031766 | Msa0007010:CDS | 25.0% |
| !! | CTATCTTTTGTAAGTACAAT+CGG | + | chr1_1:10031883-10031902 | Msa0007010:CDS | 25.0% |
| !! | AACAAACTTTGAGAAACTTA+TGG | - | chr1_1:10032498-10032517 | None:intergenic | 25.0% |
| ! | GTAAGTGTTTATATAAATGG+GGG | + | chr1_1:10032672-10032691 | Msa0007010:intron | 25.0% |
| ! | ATAACACCCTCAATTAAATA+TGG | - | chr1_1:10033234-10033253 | None:intergenic | 25.0% |
| !!! | TTTTTGTTGTTTCTCAAGTT+CGG | - | chr1_1:10033454-10033473 | None:intergenic | 25.0% |
| !! | GATTAACACTAGTACTGATT+TGG | - | chr1_1:10031599-10031618 | None:intergenic | 30.0% |
| ! | TCACGTTCATTTTCATTTTC+TGG | - | chr1_1:10031621-10031640 | None:intergenic | 30.0% |
| TTGAGTCAACTACAATCAAA+CGG | + | chr1_1:10031711-10031730 | Msa0007010:CDS | 30.0% | |
| !! | CAAAATAGTAGTTTGCTAGT+TGG | - | chr1_1:10031740-10031759 | None:intergenic | 30.0% |
| TTAAGCAAAAAGCTAGCAAT+TGG | + | chr1_1:10031910-10031929 | Msa0007010:CDS | 30.0% | |
| !!! | AGACTTAGATGCTTTTTCTT+TGG | + | chr1_1:10032425-10032444 | Msa0007010:intron | 30.0% |
| TTATGGATATGAGGAAATCA+CGG | - | chr1_1:10032481-10032500 | None:intergenic | 30.0% | |
| TTGAGAAACTTATGGATATG+AGG | - | chr1_1:10032490-10032509 | None:intergenic | 30.0% | |
| GATAAGAGAGAAAAAAACAC+AGG | - | chr1_1:10033101-10033120 | None:intergenic | 30.0% | |
| ! | CGTAAACACAAGTTGAAATA+GGG | - | chr1_1:10033123-10033142 | None:intergenic | 30.0% |
| ! | TCGTAAACACAAGTTGAAAT+AGG | - | chr1_1:10033124-10033143 | None:intergenic | 30.0% |
| TATTTCACGAACGTTACTTA+CGG | + | chr1_1:10033251-10033270 | Msa0007010:intron | 30.0% | |
| !! | TGAACTGAGTTGTTTTATCT+TGG | + | chr1_1:10033295-10033314 | Msa0007010:intron | 30.0% |
| ACATCTAAGAAAATGTACCT+AGG | + | chr1_1:10033474-10033493 | Msa0007010:intron | 30.0% | |
| !! | TGTTTTGAATGATGTTGTAG+TGG | + | chr1_1:10033520-10033539 | Msa0007010:intron | 30.0% |
| TCTGTGAATGAACTTTCTAT+AGG | + | chr1_1:10033670-10033689 | Msa0007010:intron | 30.0% | |
| ! | CATCAACTAATCCTTTTATG+CGG | - | chr1_1:10033712-10033731 | None:intergenic | 30.0% |
| !! | GATTAACACTAGTACTGATT+TGG | - | chr1_1:10031599-10031618 | None:intergenic | 30.0% |
| ! | TCACGTTCATTTTCATTTTC+TGG | - | chr1_1:10031621-10031640 | None:intergenic | 30.0% |
| TTGAGTCAACTACAATCAAA+CGG | + | chr1_1:10031711-10031730 | Msa0007010:CDS | 30.0% | |
| !! | CAAAATAGTAGTTTGCTAGT+TGG | - | chr1_1:10031740-10031759 | None:intergenic | 30.0% |
| TTAAGCAAAAAGCTAGCAAT+TGG | + | chr1_1:10031910-10031929 | Msa0007010:CDS | 30.0% | |
| !!! | AGACTTAGATGCTTTTTCTT+TGG | + | chr1_1:10032425-10032444 | Msa0007010:intron | 30.0% |
| TTATGGATATGAGGAAATCA+CGG | - | chr1_1:10032481-10032500 | None:intergenic | 30.0% | |
| TTGAGAAACTTATGGATATG+AGG | - | chr1_1:10032490-10032509 | None:intergenic | 30.0% | |
| GATAAGAGAGAAAAAAACAC+AGG | - | chr1_1:10033101-10033120 | None:intergenic | 30.0% | |
| ! | CGTAAACACAAGTTGAAATA+GGG | - | chr1_1:10033123-10033142 | None:intergenic | 30.0% |
| ! | TCGTAAACACAAGTTGAAAT+AGG | - | chr1_1:10033124-10033143 | None:intergenic | 30.0% |
| TATTTCACGAACGTTACTTA+CGG | + | chr1_1:10033251-10033270 | Msa0007010:intron | 30.0% | |
| !! | TGAACTGAGTTGTTTTATCT+TGG | + | chr1_1:10033295-10033314 | Msa0007010:intron | 30.0% |
| ACATCTAAGAAAATGTACCT+AGG | + | chr1_1:10033474-10033493 | Msa0007010:intron | 30.0% | |
| !! | TGTTTTGAATGATGTTGTAG+TGG | + | chr1_1:10033520-10033539 | Msa0007010:intron | 30.0% |
| TCTGTGAATGAACTTTCTAT+AGG | + | chr1_1:10033670-10033689 | Msa0007010:intron | 30.0% | |
| ! | CATCAACTAATCCTTTTATG+CGG | - | chr1_1:10033712-10033731 | None:intergenic | 30.0% |
| CTCTTAAATGCTCAGATAGA+TGG | + | chr1_1:10031805-10031824 | Msa0007010:CDS | 35.0% | |
| ACAAATGTAGTCTGATGTCA+AGG | - | chr1_1:10032022-10032041 | None:intergenic | 35.0% | |
| !! | ATTTGCTATCATTGTCTTCG+TGG | + | chr1_1:10032076-10032095 | Msa0007010:intron | 35.0% |
| ! | TTTGCTATCATTGTCTTCGT+GGG | + | chr1_1:10032077-10032096 | Msa0007010:intron | 35.0% |
| TGTCTCTGCATAAAAATCTC+AGG | - | chr1_1:10032106-10032125 | None:intergenic | 35.0% | |
| ! | ATTTTTATGCAGAGACACGT+AGG | + | chr1_1:10032109-10032128 | Msa0007010:intron | 35.0% |
| ! | TTTTTATGCAGAGACACGTA+GGG | + | chr1_1:10032110-10032129 | Msa0007010:intron | 35.0% |
| ! | AAGAACCACACTAAAAGTGT+TGG | + | chr1_1:10032545-10032564 | Msa0007010:intron | 35.0% |
| GTAGTATGACTCTTCAATGT+GGG | - | chr1_1:10032649-10032668 | None:intergenic | 35.0% | |
| AGTAGTATGACTCTTCAATG+TGG | - | chr1_1:10032650-10032669 | None:intergenic | 35.0% | |
| ! | TTTTCGTGTGTGGATATATC+CGG | - | chr1_1:10032951-10032970 | None:intergenic | 35.0% |
| !!! | AACAAACGCGGTTTGTTTTA+AGG | + | chr1_1:10032969-10032988 | Msa0007010:intron | 35.0% |
| TTCGCTGTAAAGAATAAGTG+AGG | - | chr1_1:10033061-10033080 | None:intergenic | 35.0% | |
| TTCGGTTAAACCACTCTATA+TGG | - | chr1_1:10033199-10033218 | None:intergenic | 35.0% | |
| !! | ACTGAGTTGTTTTATCTTGG+AGG | + | chr1_1:10033298-10033317 | Msa0007010:intron | 35.0% |
| TAGTCTACCTTACACAAACT+CGG | + | chr1_1:10033333-10033352 | Msa0007010:CDS | 35.0% | |
| ACATCTTAAAGAAAGCGACA+TGG | + | chr1_1:10033369-10033388 | Msa0007010:CDS | 35.0% | |
| TTACCACAGAAGATATTACC+AGG | - | chr1_1:10033406-10033425 | None:intergenic | 35.0% | |
| AAGAAAATGTACCTAGGTCA+TGG | + | chr1_1:10033480-10033499 | Msa0007010:intron | 35.0% | |
| AGCATTTGTGACAACAAGAA+AGG | + | chr1_1:10033568-10033587 | Msa0007010:CDS | 35.0% | |
| GCATTTGTGACAACAAGAAA+GGG | + | chr1_1:10033569-10033588 | Msa0007010:CDS | 35.0% | |
| CATTTGTGACAACAAGAAAG+GGG | + | chr1_1:10033570-10033589 | Msa0007010:CDS | 35.0% | |
| ATTTGTGACAACAAGAAAGG+GGG | + | chr1_1:10033571-10033590 | Msa0007010:CDS | 35.0% | |
| AACGTTCTTAACCGCATAAA+AGG | + | chr1_1:10033698-10033717 | Msa0007010:CDS | 35.0% | |
| CTCTTAAATGCTCAGATAGA+TGG | + | chr1_1:10031805-10031824 | Msa0007010:CDS | 35.0% | |
| ACAAATGTAGTCTGATGTCA+AGG | - | chr1_1:10032022-10032041 | None:intergenic | 35.0% | |
| !! | ATTTGCTATCATTGTCTTCG+TGG | + | chr1_1:10032076-10032095 | Msa0007010:intron | 35.0% |
| ! | TTTGCTATCATTGTCTTCGT+GGG | + | chr1_1:10032077-10032096 | Msa0007010:intron | 35.0% |
| TGTCTCTGCATAAAAATCTC+AGG | - | chr1_1:10032106-10032125 | None:intergenic | 35.0% | |
| ! | ATTTTTATGCAGAGACACGT+AGG | + | chr1_1:10032109-10032128 | Msa0007010:intron | 35.0% |
| ! | TTTTTATGCAGAGACACGTA+GGG | + | chr1_1:10032110-10032129 | Msa0007010:intron | 35.0% |
| ! | AAGAACCACACTAAAAGTGT+TGG | + | chr1_1:10032545-10032564 | Msa0007010:intron | 35.0% |
| GTAGTATGACTCTTCAATGT+GGG | - | chr1_1:10032649-10032668 | None:intergenic | 35.0% | |
| AGTAGTATGACTCTTCAATG+TGG | - | chr1_1:10032650-10032669 | None:intergenic | 35.0% | |
| ! | TTTTCGTGTGTGGATATATC+CGG | - | chr1_1:10032951-10032970 | None:intergenic | 35.0% |
| !!! | AACAAACGCGGTTTGTTTTA+AGG | + | chr1_1:10032969-10032988 | Msa0007010:intron | 35.0% |
| TTCGCTGTAAAGAATAAGTG+AGG | - | chr1_1:10033061-10033080 | None:intergenic | 35.0% | |
| TTCGGTTAAACCACTCTATA+TGG | - | chr1_1:10033199-10033218 | None:intergenic | 35.0% | |
| !! | ACTGAGTTGTTTTATCTTGG+AGG | + | chr1_1:10033298-10033317 | Msa0007010:intron | 35.0% |
| TAGTCTACCTTACACAAACT+CGG | + | chr1_1:10033333-10033352 | Msa0007010:CDS | 35.0% | |
| ACATCTTAAAGAAAGCGACA+TGG | + | chr1_1:10033369-10033388 | Msa0007010:CDS | 35.0% | |
| TTACCACAGAAGATATTACC+AGG | - | chr1_1:10033406-10033425 | None:intergenic | 35.0% | |
| AAGAAAATGTACCTAGGTCA+TGG | + | chr1_1:10033480-10033499 | Msa0007010:intron | 35.0% | |
| AGCATTTGTGACAACAAGAA+AGG | + | chr1_1:10033568-10033587 | Msa0007010:CDS | 35.0% | |
| GCATTTGTGACAACAAGAAA+GGG | + | chr1_1:10033569-10033588 | Msa0007010:CDS | 35.0% | |
| CATTTGTGACAACAAGAAAG+GGG | + | chr1_1:10033570-10033589 | Msa0007010:CDS | 35.0% | |
| ATTTGTGACAACAAGAAAGG+GGG | + | chr1_1:10033571-10033590 | Msa0007010:CDS | 35.0% | |
| AACGTTCTTAACCGCATAAA+AGG | + | chr1_1:10033698-10033717 | Msa0007010:CDS | 35.0% | |
| AAAAGAACAAACGCAGCAAC+AGG | + | chr1_1:10031953-10031972 | Msa0007010:CDS | 40.0% | |
| GACTCATCAAGACATGATGT+GGG | + | chr1_1:10031975-10031994 | Msa0007010:CDS | 40.0% | |
| ACTCATCAAGACATGATGTG+GGG | + | chr1_1:10031976-10031995 | Msa0007010:CDS | 40.0% | |
| ! | TTTTATGCAGAGACACGTAG+GGG | + | chr1_1:10032111-10032130 | Msa0007010:intron | 40.0% |
| AAACGGCTGATAAGACTTTG+AGG | + | chr1_1:10032380-10032399 | Msa0007010:intron | 40.0% | |
| TGAGGTGAAGAACTTTAGTG+AGG | + | chr1_1:10032398-10032417 | Msa0007010:intron | 40.0% | |
| GAGGTGAAGAACTTTAGTGA+GGG | + | chr1_1:10032399-10032418 | Msa0007010:intron | 40.0% | |
| ! | GTGTTCCAACACTTTTAGTG+TGG | - | chr1_1:10032553-10032572 | None:intergenic | 40.0% |
| TGGAACACTAGCAACAATAG+CGG | + | chr1_1:10032565-10032584 | Msa0007010:intron | 40.0% | |
| ! | TAGCAACAATAGCGGAAAGT+TGG | + | chr1_1:10032573-10032592 | Msa0007010:intron | 40.0% |
| ACCTTAGTAAGAGCTAGTGT+TGG | + | chr1_1:10032607-10032626 | Msa0007010:intron | 40.0% | |
| ! | ACCAACACTAGCTCTTACTA+AGG | - | chr1_1:10032611-10032630 | None:intergenic | 40.0% |
| ! | TTTTTACCCAAGTCCAAGCT+CGG | - | chr1_1:10032795-10032814 | None:intergenic | 40.0% |
| ! | TACTCTCTGTTGGATTGGAT+CGG | - | chr1_1:10032917-10032936 | None:intergenic | 40.0% |
| AACAAAAACGGGGTGACTTA+AGG | - | chr1_1:10033011-10033030 | None:intergenic | 40.0% | |
| GAGAGTTCGTAACAAAAACG+GGG | - | chr1_1:10033021-10033040 | None:intergenic | 40.0% | |
| GGAGAGTTCGTAACAAAAAC+GGG | - | chr1_1:10033022-10033041 | None:intergenic | 40.0% | |
| GGGAGAGTTCGTAACAAAAA+CGG | - | chr1_1:10033023-10033042 | None:intergenic | 40.0% | |
| TGTTACGAACTCTCCCTATA+AGG | + | chr1_1:10033027-10033046 | Msa0007010:intron | 40.0% | |
| ACACTATCCGAGTTTGTGTA+AGG | - | chr1_1:10033343-10033362 | None:intergenic | 40.0% | |
| CAACCTGGTAATATCTTCTG+TGG | + | chr1_1:10033400-10033419 | Msa0007010:intron | 40.0% | |
| ! | ACCTAGGTCATGGAAGATTT+TGG | + | chr1_1:10033490-10033509 | Msa0007010:intron | 40.0% |
| ACCAAAATCTTCCATGACCT+AGG | - | chr1_1:10033494-10033513 | None:intergenic | 40.0% | |
| AAAAGAACAAACGCAGCAAC+AGG | + | chr1_1:10031953-10031972 | Msa0007010:CDS | 40.0% | |
| GACTCATCAAGACATGATGT+GGG | + | chr1_1:10031975-10031994 | Msa0007010:CDS | 40.0% | |
| ACTCATCAAGACATGATGTG+GGG | + | chr1_1:10031976-10031995 | Msa0007010:CDS | 40.0% | |
| ! | TTTTATGCAGAGACACGTAG+GGG | + | chr1_1:10032111-10032130 | Msa0007010:intron | 40.0% |
| AAACGGCTGATAAGACTTTG+AGG | + | chr1_1:10032380-10032399 | Msa0007010:intron | 40.0% | |
| TGAGGTGAAGAACTTTAGTG+AGG | + | chr1_1:10032398-10032417 | Msa0007010:intron | 40.0% | |
| GAGGTGAAGAACTTTAGTGA+GGG | + | chr1_1:10032399-10032418 | Msa0007010:intron | 40.0% | |
| ! | GTGTTCCAACACTTTTAGTG+TGG | - | chr1_1:10032553-10032572 | None:intergenic | 40.0% |
| TGGAACACTAGCAACAATAG+CGG | + | chr1_1:10032565-10032584 | Msa0007010:intron | 40.0% | |
| ! | TAGCAACAATAGCGGAAAGT+TGG | + | chr1_1:10032573-10032592 | Msa0007010:intron | 40.0% |
| ACCTTAGTAAGAGCTAGTGT+TGG | + | chr1_1:10032607-10032626 | Msa0007010:intron | 40.0% | |
| ! | ACCAACACTAGCTCTTACTA+AGG | - | chr1_1:10032611-10032630 | None:intergenic | 40.0% |
| ! | TTTTTACCCAAGTCCAAGCT+CGG | - | chr1_1:10032795-10032814 | None:intergenic | 40.0% |
| ! | TACTCTCTGTTGGATTGGAT+CGG | - | chr1_1:10032917-10032936 | None:intergenic | 40.0% |
| AACAAAAACGGGGTGACTTA+AGG | - | chr1_1:10033011-10033030 | None:intergenic | 40.0% | |
| GAGAGTTCGTAACAAAAACG+GGG | - | chr1_1:10033021-10033040 | None:intergenic | 40.0% | |
| GGAGAGTTCGTAACAAAAAC+GGG | - | chr1_1:10033022-10033041 | None:intergenic | 40.0% | |
| GGGAGAGTTCGTAACAAAAA+CGG | - | chr1_1:10033023-10033042 | None:intergenic | 40.0% | |
| TGTTACGAACTCTCCCTATA+AGG | + | chr1_1:10033027-10033046 | Msa0007010:intron | 40.0% | |
| ACACTATCCGAGTTTGTGTA+AGG | - | chr1_1:10033343-10033362 | None:intergenic | 40.0% | |
| CAACCTGGTAATATCTTCTG+TGG | + | chr1_1:10033400-10033419 | Msa0007010:intron | 40.0% | |
| ! | ACCTAGGTCATGGAAGATTT+TGG | + | chr1_1:10033490-10033509 | Msa0007010:intron | 40.0% |
| ACCAAAATCTTCCATGACCT+AGG | - | chr1_1:10033494-10033513 | None:intergenic | 40.0% | |
| !! | CACTGTTGCAGAGTGTTGTT+AGG | - | chr1_1:10031779-10031798 | None:intergenic | 45.0% |
| GGACTCATCAAGACATGATG+TGG | + | chr1_1:10031974-10031993 | Msa0007010:CDS | 45.0% | |
| CTCATCAAGACATGATGTGG+GGG | + | chr1_1:10031977-10031996 | Msa0007010:CDS | 45.0% | |
| !! | CCAATCCAACAGAGAGTATC+CGG | + | chr1_1:10032919-10032938 | Msa0007010:intron | 45.0% |
| !! | CAATCCAACAGAGAGTATCC+GGG | + | chr1_1:10032920-10032939 | Msa0007010:intron | 45.0% |
| TCCACACACGAAAACAAACG+CGG | + | chr1_1:10032957-10032976 | Msa0007010:intron | 45.0% | |
| ! | TCTACTCCTTTTTGTCCCGT+CGG | + | chr1_1:10033155-10033174 | Msa0007010:intron | 45.0% |
| GGTCTACGTACCATATAGAG+TGG | + | chr1_1:10033186-10033205 | Msa0007010:intron | 45.0% | |
| ! | GTTTTATCTTGGAGGTGACG+CGG | + | chr1_1:10033306-10033325 | Msa0007010:intron | 45.0% |
| ! | TTTTATCTTGGAGGTGACGC+GGG | + | chr1_1:10033307-10033326 | Msa0007010:intron | 45.0% |
| !! | CACTGTTGCAGAGTGTTGTT+AGG | - | chr1_1:10031779-10031798 | None:intergenic | 45.0% |
| GGACTCATCAAGACATGATG+TGG | + | chr1_1:10031974-10031993 | Msa0007010:CDS | 45.0% | |
| CTCATCAAGACATGATGTGG+GGG | + | chr1_1:10031977-10031996 | Msa0007010:CDS | 45.0% | |
| !! | CCAATCCAACAGAGAGTATC+CGG | + | chr1_1:10032919-10032938 | Msa0007010:intron | 45.0% |
| !! | CAATCCAACAGAGAGTATCC+GGG | + | chr1_1:10032920-10032939 | Msa0007010:intron | 45.0% |
| TCCACACACGAAAACAAACG+CGG | + | chr1_1:10032957-10032976 | Msa0007010:intron | 45.0% | |
| ! | TCTACTCCTTTTTGTCCCGT+CGG | + | chr1_1:10033155-10033174 | Msa0007010:intron | 45.0% |
| GGTCTACGTACCATATAGAG+TGG | + | chr1_1:10033186-10033205 | Msa0007010:intron | 45.0% | |
| ! | GTTTTATCTTGGAGGTGACG+CGG | + | chr1_1:10033306-10033325 | Msa0007010:intron | 45.0% |
| ! | TTTTATCTTGGAGGTGACGC+GGG | + | chr1_1:10033307-10033326 | Msa0007010:intron | 45.0% |
| ! | GTGTTGTTAGGATGACGCCT+TGG | - | chr1_1:10031767-10031786 | None:intergenic | 50.0% |
| TAAATGGGGGCTGACCTACA+AGG | + | chr1_1:10032685-10032704 | Msa0007010:intron | 50.0% | |
| AAATGGGGGCTGACCTACAA+GGG | + | chr1_1:10032686-10032705 | Msa0007010:intron | 50.0% | |
| GCTCATCCGTTCGCAAAAGT+GGG | - | chr1_1:10032727-10032746 | None:intergenic | 50.0% | |
| CCGGATACTCTCTGTTGGAT+TGG | - | chr1_1:10032922-10032941 | None:intergenic | 50.0% | |
| TGGATATATCCGGAACCTCC+CGG | - | chr1_1:10032941-10032960 | None:intergenic | 50.0% | |
| !! | ACCGCGTTTGTTTTCGTGTG+TGG | - | chr1_1:10032961-10032980 | None:intergenic | 50.0% |
| CGAACTCTCCCTATAAGGAG+AGG | + | chr1_1:10033032-10033051 | Msa0007010:intron | 50.0% | |
| TGAGGCGACCTCTCCTTATA+GGG | - | chr1_1:10033043-10033062 | None:intergenic | 50.0% | |
| ACGAAACCGACGGGACAAAA+AGG | - | chr1_1:10033164-10033183 | None:intergenic | 50.0% | |
| GGTGCAGTACGTAATCGAAC+AGG | + | chr1_1:10033272-10033291 | Msa0007010:intron | 50.0% | |
| ! | GTGTTGTTAGGATGACGCCT+TGG | - | chr1_1:10031767-10031786 | None:intergenic | 50.0% |
| TAAATGGGGGCTGACCTACA+AGG | + | chr1_1:10032685-10032704 | Msa0007010:intron | 50.0% | |
| AAATGGGGGCTGACCTACAA+GGG | + | chr1_1:10032686-10032705 | Msa0007010:intron | 50.0% | |
| GCTCATCCGTTCGCAAAAGT+GGG | - | chr1_1:10032727-10032746 | None:intergenic | 50.0% | |
| CCGGATACTCTCTGTTGGAT+TGG | - | chr1_1:10032922-10032941 | None:intergenic | 50.0% | |
| TGGATATATCCGGAACCTCC+CGG | - | chr1_1:10032941-10032960 | None:intergenic | 50.0% | |
| !! | ACCGCGTTTGTTTTCGTGTG+TGG | - | chr1_1:10032961-10032980 | None:intergenic | 50.0% |
| CGAACTCTCCCTATAAGGAG+AGG | + | chr1_1:10033032-10033051 | Msa0007010:intron | 50.0% | |
| TGAGGCGACCTCTCCTTATA+GGG | - | chr1_1:10033043-10033062 | None:intergenic | 50.0% | |
| ACGAAACCGACGGGACAAAA+AGG | - | chr1_1:10033164-10033183 | None:intergenic | 50.0% | |
| GGTGCAGTACGTAATCGAAC+AGG | + | chr1_1:10033272-10033291 | Msa0007010:intron | 50.0% | |
| ! | ACCTACAAGGGTGTGCCCTT+GGG | + | chr1_1:10032698-10032717 | Msa0007010:intron | 55.0% |
| CGCTCATCCGTTCGCAAAAG+TGG | - | chr1_1:10032728-10032747 | None:intergenic | 55.0% | |
| TACCCAAGTCCAAGCTCGGA+CGG | - | chr1_1:10032791-10032810 | None:intergenic | 55.0% | |
| !! | TCCAACAGAGAGTATCCGGG+AGG | + | chr1_1:10032923-10032942 | Msa0007010:intron | 55.0% |
| ACCTCCCGGATACTCTCTGT+TGG | - | chr1_1:10032927-10032946 | None:intergenic | 55.0% | |
| !! | AGAGAGTATCCGGGAGGTTC+CGG | + | chr1_1:10032929-10032948 | Msa0007010:intron | 55.0% |
| GTGAGGCGACCTCTCCTTAT+AGG | - | chr1_1:10033044-10033063 | None:intergenic | 55.0% | |
| !! | TTTGTCCCGTCGGTTTCGTG+TGG | + | chr1_1:10033165-10033184 | Msa0007010:intron | 55.0% |
| GTAGACCACACGAAACCGAC+GGG | - | chr1_1:10033173-10033192 | None:intergenic | 55.0% | |
| CGTAGACCACACGAAACCGA+CGG | - | chr1_1:10033174-10033193 | None:intergenic | 55.0% | |
| GACATGGTCGTGACTCAACC+TGG | + | chr1_1:10033385-10033404 | Msa0007010:CDS | 55.0% | |
| ! | ACCTACAAGGGTGTGCCCTT+GGG | + | chr1_1:10032698-10032717 | Msa0007010:intron | 55.0% |
| CGCTCATCCGTTCGCAAAAG+TGG | - | chr1_1:10032728-10032747 | None:intergenic | 55.0% | |
| TACCCAAGTCCAAGCTCGGA+CGG | - | chr1_1:10032791-10032810 | None:intergenic | 55.0% | |
| !! | TCCAACAGAGAGTATCCGGG+AGG | + | chr1_1:10032923-10032942 | Msa0007010:intron | 55.0% |
| ACCTCCCGGATACTCTCTGT+TGG | - | chr1_1:10032927-10032946 | None:intergenic | 55.0% | |
| !! | AGAGAGTATCCGGGAGGTTC+CGG | + | chr1_1:10032929-10032948 | Msa0007010:intron | 55.0% |
| GTGAGGCGACCTCTCCTTAT+AGG | - | chr1_1:10033044-10033063 | None:intergenic | 55.0% | |
| !! | TTTGTCCCGTCGGTTTCGTG+TGG | + | chr1_1:10033165-10033184 | Msa0007010:intron | 55.0% |
| GTAGACCACACGAAACCGAC+GGG | - | chr1_1:10033173-10033192 | None:intergenic | 55.0% | |
| CGTAGACCACACGAAACCGA+CGG | - | chr1_1:10033174-10033193 | None:intergenic | 55.0% | |
| GACATGGTCGTGACTCAACC+TGG | + | chr1_1:10033385-10033404 | Msa0007010:CDS | 55.0% | |
| ! | GACCTACAAGGGTGTGCCCT+TGG | + | chr1_1:10032697-10032716 | Msa0007010:intron | 60.0% |
| ! | CCTACAAGGGTGTGCCCTTG+GGG | + | chr1_1:10032699-10032718 | Msa0007010:intron | 60.0% |
| CGCAAAAGTGGGCACCCCAA+GGG | - | chr1_1:10032716-10032735 | None:intergenic | 60.0% | |
| TCGCAAAAGTGGGCACCCCA+AGG | - | chr1_1:10032717-10032736 | None:intergenic | 60.0% | |
| !! | GGGGTGCCCACTTTTGCGAA+CGG | + | chr1_1:10032718-10032737 | Msa0007010:intron | 60.0% |
| CAAGTCCAAGCTCGGACGGA+CGG | - | chr1_1:10032787-10032806 | None:intergenic | 60.0% | |
| GTCCGTCCGAGCTTGGACTT+GGG | + | chr1_1:10032786-10032805 | Msa0007010:intron | 60.0% | |
| ! | GACCTACAAGGGTGTGCCCT+TGG | + | chr1_1:10032697-10032716 | Msa0007010:intron | 60.0% |
| ! | CCTACAAGGGTGTGCCCTTG+GGG | + | chr1_1:10032699-10032718 | Msa0007010:intron | 60.0% |
| CGCAAAAGTGGGCACCCCAA+GGG | - | chr1_1:10032716-10032735 | None:intergenic | 60.0% | |
| TCGCAAAAGTGGGCACCCCA+AGG | - | chr1_1:10032717-10032736 | None:intergenic | 60.0% | |
| !! | GGGGTGCCCACTTTTGCGAA+CGG | + | chr1_1:10032718-10032737 | Msa0007010:intron | 60.0% |
| CAAGTCCAAGCTCGGACGGA+CGG | - | chr1_1:10032787-10032806 | None:intergenic | 60.0% | |
| GTCCGTCCGAGCTTGGACTT+GGG | + | chr1_1:10032786-10032805 | Msa0007010:intron | 60.0% | |
| ! | CCCCAAGGGCACACCCTTGT+AGG | - | chr1_1:10032702-10032721 | None:intergenic | 65.0% |
| CGTCCGTCCGAGCTTGGACT+TGG | + | chr1_1:10032785-10032804 | Msa0007010:intron | 65.0% | |
| ! | CCCCAAGGGCACACCCTTGT+AGG | - | chr1_1:10032702-10032721 | None:intergenic | 65.0% |
| CGTCCGTCCGAGCTTGGACT+TGG | + | chr1_1:10032785-10032804 | Msa0007010:intron | 65.0% | |
| GTCCAAGCTCGGACGGACGG+CGG | - | chr1_1:10032784-10032803 | None:intergenic | 70.0% | |
| GTCCAAGCTCGGACGGACGG+CGG | - | chr1_1:10032784-10032803 | None:intergenic | 70.0% | |
| ! | CGCCGCCGTCCGTCCGAGCT+TGG | + | chr1_1:10032779-10032798 | Msa0007010:intron | 80.0% |
| ! | CGCCGCCGTCCGTCCGAGCT+TGG | + | chr1_1:10032779-10032798 | Msa0007010:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 10031585 | 10033751 | 10031585 | ID=Msa0007010;Name=Msa0007010 |
| chr1_1 | mRNA | 10031585 | 10033751 | 10031585 | ID=Msa0007010-mRNA-1;Parent=Msa0007010;Name=Msa0007010-mRNA-1;_AED=0.33;_eAED=0.91;_QI=0|0|0|1|1|1|4|0|221 |
| chr1_1 | exon | 10031585 | 10032050 | 10031585 | ID=Msa0007010-mRNA-1:exon:3618;Parent=Msa0007010-mRNA-1 |
| chr1_1 | exon | 10033320 | 10033406 | 10033320 | ID=Msa0007010-mRNA-1:exon:3619;Parent=Msa0007010-mRNA-1 |
| chr1_1 | exon | 10033540 | 10033592 | 10033540 | ID=Msa0007010-mRNA-1:exon:3620;Parent=Msa0007010-mRNA-1 |
| chr1_1 | exon | 10033692 | 10033751 | 10033692 | ID=Msa0007010-mRNA-1:exon:3621;Parent=Msa0007010-mRNA-1 |
| chr1_1 | CDS | 10031585 | 10032050 | 10031585 | ID=Msa0007010-mRNA-1:cds;Parent=Msa0007010-mRNA-1 |
| chr1_1 | CDS | 10033320 | 10033406 | 10033320 | ID=Msa0007010-mRNA-1:cds;Parent=Msa0007010-mRNA-1 |
| chr1_1 | CDS | 10033540 | 10033592 | 10033540 | ID=Msa0007010-mRNA-1:cds;Parent=Msa0007010-mRNA-1 |
| chr1_1 | CDS | 10033692 | 10033751 | 10033692 | ID=Msa0007010-mRNA-1:cds;Parent=Msa0007010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
