Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871800 | PNY01636.1 | 91.150 | 113 | 10 | 0 | 1 | 113 | 21 | 133 | 3.21e-64 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871800 | sp|Q9LU10|DEGP8_ARATH | 67.257 | 113 | 37 | 0 | 1 | 113 | 336 | 448 | 9.38e-46 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871800 | A0A2K3NF40 | 91.150 | 113 | 10 | 0 | 1 | 113 | 21 | 133 | 1.54e-64 | 201 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007010 | Msa0871800 | 0.802097 | 6.595713e-49 | -8.615850e-47 |
| Msa0017120 | Msa0871800 | 0.810794 | 9.653948e-51 | -8.615850e-47 |
| Msa0020630 | Msa0871800 | 0.836409 | 9.518980e-57 | -8.615850e-47 |
| Msa0027540 | Msa0871800 | 0.807836 | 4.160982e-50 | -8.615850e-47 |
| Msa0030000 | Msa0871800 | 0.803914 | 2.776910e-49 | -8.615850e-47 |
| Msa0037820 | Msa0871800 | 0.800796 | 1.218208e-48 | -8.615850e-47 |
| Msa0044710 | Msa0871800 | 0.802684 | 4.990587e-49 | -8.615850e-47 |
| Msa0060600 | Msa0871800 | 0.802216 | 6.233909e-49 | -8.615850e-47 |
| Msa0075310 | Msa0871800 | 0.806856 | 6.713912e-50 | -8.615850e-47 |
| Msa0083160 | Msa0871800 | 0.805247 | 1.463683e-49 | -8.615850e-47 |
| Msa0084630 | Msa0871800 | 0.810124 | 1.346893e-50 | -8.615850e-47 |
| Msa0084680 | Msa0871800 | 0.803928 | 2.758235e-49 | -8.615850e-47 |
| Msa0091770 | Msa0871800 | 0.819093 | 1.391510e-52 | -8.615850e-47 |
| Msa0101060 | Msa0871800 | 0.802346 | 5.859431e-49 | -8.615850e-47 |
| Msa0105340 | Msa0871800 | 0.800445 | 1.436658e-48 | -8.615850e-47 |
| Msa0105420 | Msa0871800 | 0.832706 | 8.110677e-56 | -8.615850e-47 |
| Msa0114250 | Msa0871800 | 0.802182 | 6.333238e-49 | -8.615850e-47 |
| Msa0607200 | Msa0871800 | 0.815686 | 8.142082e-52 | -8.615850e-47 |
| Msa0614040 | Msa0871800 | 0.802594 | 5.209191e-49 | -8.615850e-47 |
| Msa0619330 | Msa0871800 | 0.810840 | 9.438082e-51 | -8.615850e-47 |
| Msa0620640 | Msa0871800 | 0.804054 | 2.596227e-49 | -8.615850e-47 |
| Msa0621890 | Msa0871800 | 0.820614 | 6.249433e-53 | -8.615850e-47 |
| Msa0624730 | Msa0871800 | 0.808018 | 3.806274e-50 | -8.615850e-47 |
| Msa0647000 | Msa0871800 | 0.829605 | 4.687335e-55 | -8.615850e-47 |
| Msa0657670 | Msa0871800 | 0.821394 | 4.134146e-53 | -8.615850e-47 |
| Msa0674220 | Msa0871800 | 0.803855 | 2.856824e-49 | -8.615850e-47 |
| Msa0677820 | Msa0871800 | 0.814898 | 1.218564e-51 | -8.615850e-47 |
| Msa0681890 | Msa0871800 | 0.811535 | 6.667791e-51 | -8.615850e-47 |
| Msa0707780 | Msa0871800 | 0.805184 | 1.508810e-49 | -8.615850e-47 |
| Msa0730180 | Msa0871800 | 0.823015 | 1.739131e-53 | -8.615850e-47 |
| Msa0743640 | Msa0871800 | 0.800636 | 1.313437e-48 | -8.615850e-47 |
| Msa0760890 | Msa0871800 | 0.817955 | 2.520612e-52 | -8.615850e-47 |
| Msa0770430 | Msa0871800 | 0.827566 | 1.457557e-54 | -8.615850e-47 |
| Msa0792510 | Msa0871800 | 0.808243 | 3.407603e-50 | -8.615850e-47 |
| Msa0820670 | Msa0871800 | 0.810607 | 1.059535e-50 | -8.615850e-47 |
| Msa0828570 | Msa0871800 | 0.808271 | 3.361922e-50 | -8.615850e-47 |
| Msa0149500 | Msa0871800 | 0.820009 | 8.599469e-53 | -8.615850e-47 |
| Msa0159750 | Msa0871800 | 0.838212 | 3.287663e-57 | -8.615850e-47 |
| Msa0168100 | Msa0871800 | 0.824169 | 9.334633e-54 | -8.615850e-47 |
| Msa0175530 | Msa0871800 | 0.813585 | 2.375891e-51 | -8.615850e-47 |
| Msa0207000 | Msa0871800 | 0.818213 | 2.204087e-52 | -8.615850e-47 |
| Msa0213080 | Msa0871800 | 0.821870 | 3.207930e-53 | -8.615850e-47 |
| Msa0223290 | Msa0871800 | 0.804667 | 1.935143e-49 | -8.615850e-47 |
| Msa0367490 | Msa0871800 | 0.807735 | 4.370903e-50 | -8.615850e-47 |
| Msa0371610 | Msa0871800 | 0.800106 | 1.683906e-48 | -8.615850e-47 |
| Msa0411560 | Msa0871800 | 0.812999 | 3.195862e-51 | -8.615850e-47 |
| Msa0413740 | Msa0871800 | 0.808288 | 3.333646e-50 | -8.615850e-47 |
| Msa0436280 | Msa0871800 | -0.812732 | 3.656421e-51 | -8.615850e-47 |
| Msa0437710 | Msa0871800 | 0.807222 | 5.617081e-50 | -8.615850e-47 |
| Msa0462590 | Msa0871800 | 0.809281 | 2.044975e-50 | -8.615850e-47 |
| Msa0467920 | Msa0871800 | -0.812573 | 3.960539e-51 | -8.615850e-47 |
| Msa0269360 | Msa0871800 | 0.802381 | 5.764337e-49 | -8.615850e-47 |
| Msa0288330 | Msa0871800 | 0.817189 | 3.751898e-52 | -8.615850e-47 |
| Msa0296610 | Msa0871800 | 0.807283 | 5.452982e-50 | -8.615850e-47 |
| Msa0320100 | Msa0871800 | 0.803991 | 2.676066e-49 | -8.615850e-47 |
| Msa0323630 | Msa0871800 | 0.812115 | 4.986551e-51 | -8.615850e-47 |
| Msa0334980 | Msa0871800 | 0.811056 | 8.471608e-51 | -8.615850e-47 |
| Msa0342200 | Msa0871800 | 0.804708 | 1.896988e-49 | -8.615850e-47 |
| Msa0350020 | Msa0871800 | 0.826066 | 3.325386e-54 | -8.615850e-47 |
| Msa0484690 | Msa0871800 | 0.808098 | 3.659828e-50 | -8.615850e-47 |
| Msa0490350 | Msa0871800 | 0.836803 | 7.552271e-57 | -8.615850e-47 |
| Msa0505390 | Msa0871800 | 0.805513 | 1.287654e-49 | -8.615850e-47 |
| Msa0508200 | Msa0871800 | 0.828274 | 9.845697e-55 | -8.615850e-47 |
| Msa0509970 | Msa0871800 | 0.807733 | 4.376196e-50 | -8.615850e-47 |
| Msa0510960 | Msa0871800 | 0.814846 | 1.251450e-51 | -8.615850e-47 |
| Msa0524050 | Msa0871800 | 0.801929 | 7.140956e-49 | -8.615850e-47 |
| Msa0532330 | Msa0871800 | 0.810322 | 1.221196e-50 | -8.615850e-47 |
| Msa0535030 | Msa0871800 | 0.815238 | 1.024384e-51 | -8.615850e-47 |
| Msa0535060 | Msa0871800 | 0.817622 | 2.997776e-52 | -8.615850e-47 |
| Msa0540320 | Msa0871800 | 0.805247 | 1.463683e-49 | -8.615850e-47 |
| Msa0546380 | Msa0871800 | 0.824207 | 9.144930e-54 | -8.615850e-47 |
| Msa0574170 | Msa0871800 | 0.800625 | 1.320256e-48 | -8.615850e-47 |
| Msa0582110 | Msa0871800 | 0.801992 | 6.929787e-49 | -8.615850e-47 |
| Msa0583790 | Msa0871800 | 0.806800 | 6.897427e-50 | -8.615850e-47 |
| Msa0591770 | Msa0871800 | 0.814859 | 1.243272e-51 | -8.615850e-47 |
| Msa0598250 | Msa0871800 | 0.817226 | 3.680158e-52 | -8.615850e-47 |
| Msa0870620 | Msa0871800 | 0.811694 | 6.158574e-51 | -8.615850e-47 |
| Msa0871800 | Msa0874760 | 0.801103 | 1.054330e-48 | -8.615850e-47 |
| Msa0871800 | Msa0890250 | 0.824597 | 7.403451e-54 | -8.615850e-47 |
| Msa0871800 | Msa0903730 | 0.826926 | 2.074662e-54 | -8.615850e-47 |
| Msa0871800 | Msa0909710 | 0.816948 | 4.249892e-52 | -8.615850e-47 |
| Msa0871800 | Msa0925160 | 0.819764 | 9.787590e-53 | -8.615850e-47 |
| Msa0871800 | Msa0937940 | 0.818787 | 1.633911e-52 | -8.615850e-47 |
| Msa0871800 | Msa0955260 | 0.810438 | 1.152610e-50 | -8.615850e-47 |
| Msa0871800 | Msa0964680 | 0.805458 | 1.321973e-49 | -8.615850e-47 |
| Msa0871800 | Msa0980440 | 0.800770 | 1.232920e-48 | -8.615850e-47 |
| Msa0871800 | Msa1014350 | 0.801549 | 8.544572e-49 | -8.615850e-47 |
| Msa0871800 | Msa1036390 | 0.812803 | 3.528326e-51 | -8.615850e-47 |
| Msa0871800 | Msa1058010 | 0.807719 | 4.406341e-50 | -8.615850e-47 |
| Msa0871800 | Msa1072350 | 0.803128 | 4.041219e-49 | -8.615850e-47 |
| Msa0871800 | Msa1076680 | 0.802293 | 6.008418e-49 | -8.615850e-47 |
| Msa0871800 | Msa1177280 | 0.803723 | 3.043019e-49 | -8.615850e-47 |
| Msa0871800 | Msa1184580 | 0.807197 | 5.686119e-50 | -8.615850e-47 |
| Msa0871800 | Msa1201990 | 0.804974 | 1.669505e-49 | -8.615850e-47 |
| Msa0871800 | Msa1217860 | 0.809476 | 1.856706e-50 | -8.615850e-47 |
| Msa0871800 | Msa1238490 | 0.802591 | 5.217359e-49 | -8.615850e-47 |
| Msa0871800 | Msa1262310 | 0.819376 | 1.199599e-52 | -8.615850e-47 |
| Msa0871800 | Msa1264560 | 0.825925 | 3.592913e-54 | -8.615850e-47 |
| Msa0871800 | Msa1265960 | 0.821362 | 4.205003e-53 | -8.615850e-47 |
| Msa0871800 | Msa1269580 | -0.807865 | 4.102058e-50 | -8.615850e-47 |
| Msa0871800 | Msa1280120 | 0.801809 | 7.557528e-49 | -8.615850e-47 |
| Msa0871800 | Msa1280130 | 0.804560 | 2.037368e-49 | -8.615850e-47 |
| Msa0871800 | Msa1302150 | 0.815259 | 1.013429e-51 | -8.615850e-47 |
| Msa0871800 | Msa1326000 | 0.827979 | 1.159919e-54 | -8.615850e-47 |
| Msa0871800 | Msa1329990 | 0.826785 | 2.242286e-54 | -8.615850e-47 |
| Msa0871800 | Msa1365040 | -0.812101 | 5.021156e-51 | -8.615850e-47 |
| Msa0871800 | Msa1373950 | 0.802967 | 4.363171e-49 | -8.615850e-47 |
| Msa0871800 | Msa1374440 | 0.807372 | 5.220414e-50 | -8.615850e-47 |
| Msa0871800 | Msa1385620 | 0.840939 | 6.425620e-58 | -8.615850e-47 |
| Msa0871800 | Msa1418200 | 0.842909 | 1.938462e-58 | -8.615850e-47 |
| Msa0871800 | Msa1422270 | 0.804186 | 2.437583e-49 | -8.615850e-47 |
| Msa0871800 | Msa1429360 | -0.813402 | 2.606810e-51 | -8.615850e-47 |
| Msa0871800 | Msa1431000 | 0.818653 | 1.752381e-52 | -8.615850e-47 |
| Msa0871800 | Msa1456810 | 0.810391 | 1.179900e-50 | -8.615850e-47 |
| Msa0871800 | Msa1464560 | 0.835140 | 1.995071e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871800 | MtrunA17_Chr6g0453121 | 92.035 | 113 | 9 | 0 | 1 | 113 | 346 | 458 | 3.06e-65 | 204 |
| Msa0871800 | MtrunA17_Chr6g0450671 | 36.607 | 112 | 70 | 1 | 1 | 112 | 319 | 429 | 9.39e-17 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871800 | AT5G39830.2 | 67.257 | 113 | 37 | 0 | 1 | 113 | 322 | 434 | 7.54e-47 | 155 |
| Msa0871800 | AT5G39830.1 | 67.257 | 113 | 37 | 0 | 1 | 113 | 336 | 448 | 9.53e-47 | 155 |
| Msa0871800 | AT3G27925.1 | 36.937 | 111 | 69 | 1 | 1 | 111 | 326 | 435 | 2.32e-15 | 70.9 |
| Msa0871800 | AT3G27925.2 | 36.937 | 111 | 69 | 1 | 1 | 111 | 326 | 435 | 2.32e-15 | 70.9 |
Find 29 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAATGATTCGTCAATTTA+AGG | 0.147774 | 6_1:+6982843 | Msa0871800:exon |
| AGGAGAGTTGTTGAAGGTAT+TGG | 0.326012 | 6_1:+6983645 | Msa0871800:CDS |
| GAATCATTGACTTAAGTATA+AGG | 0.337537 | 6_1:-6982831 | None:intergenic |
| AGTTGATTTGCAATCAAGTC+TGG | 0.378170 | 6_1:-6982898 | None:intergenic |
| ATATTACTGCATACAGTACT+TGG | 0.391357 | 6_1:-6982775 | None:intergenic |
| CCCACTGCAAGAGGATTTGC+TGG | 0.394473 | 6_1:+6983089 | Msa0871800:CDS |
| CAATTTAAGGTTGTTAGAGC+TGG | 0.421502 | 6_1:+6982856 | Msa0871800:CDS |
| CACAAGCAAACTTGTAATGT+TGG | 0.437303 | 6_1:+6982741 | Msa0871800:five_prime_UTR |
| AATCAACTTAACGTTCGAAA+TGG | 0.442751 | 6_1:+6982913 | Msa0871800:CDS |
| TTTGCTGGTAATATAGTCCT+TGG | 0.459672 | 6_1:+6983104 | Msa0871800:CDS |
| AATAGTCTTGCTGCCAAAGT+AGG | 0.466843 | 6_1:+6983059 | Msa0871800:CDS |
| TCAAAGAGGTGATGAAAAGT+TGG | 0.474785 | 6_1:+6983705 | Msa0871800:CDS |
| ACAAGCAAACTTGTAATGTT+GGG | 0.490913 | 6_1:+6982742 | Msa0871800:five_prime_UTR |
| AATCATTGACTTAAGTATAA+GGG | 0.494987 | 6_1:-6982830 | None:intergenic |
| AGTGGGATTTAGTCCTACTT+TGG | 0.499080 | 6_1:-6983072 | None:intergenic |
| CTCTGTTCCTCAAGTACCAT+AGG | 0.543147 | 6_1:-6983733 | None:intergenic |
| AAATGGAGCTCTTATTCGTA+CGG | 0.547905 | 6_1:+6982930 | Msa0871800:CDS |
| GAGCAAAGGAGAGTTGTTGA+AGG | 0.562502 | 6_1:+6983639 | Msa0871800:CDS |
| TGAAAAGTTGGAGCTGCCTA+TGG | 0.567740 | 6_1:+6983717 | Msa0871800:CDS |
| GTATTGGATGAGTATAATGT+AGG | 0.571729 | 6_1:+6983661 | Msa0871800:CDS |
| CCAGCAAATCCTCTTGCAGT+GGG | 0.578110 | 6_1:-6983089 | None:intergenic |
| TGTTAGAGCTGGATTGAATG+TGG | 0.584555 | 6_1:+6982867 | Msa0871800:CDS |
| GTAATGTTGTTGATTCAAAG+AGG | 0.584814 | 6_1:+6983691 | Msa0871800:CDS |
| TATTACTGCATACAGTACTT+GGG | 0.591003 | 6_1:-6982774 | None:intergenic |
| GGACTAAATCCCACTGCAAG+AGG | 0.592687 | 6_1:+6983080 | Msa0871800:CDS |
| ACCAGCAAATCCTCTTGCAG+TGG | 0.597269 | 6_1:-6983090 | None:intergenic |
| GGAGCTGCCTATGGTACTTG+AGG | 0.600833 | 6_1:+6983726 | Msa0871800:CDS |
| CTGCAATGATGATATCTCCA+AGG | 0.619534 | 6_1:-6983121 | None:intergenic |
| TCTTGGTAGGTCAAGAGCAA+AGG | 0.624326 | 6_1:+6983625 | Msa0871800:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTAATTTGAAAACTT+TGG | + | chr6_1:6983597-6983616 | Msa0871800:intron | 10.0% |
| !!! | TTTAATTAATTTGAAAACTT+TGG | + | chr6_1:6983597-6983616 | Msa0871800:intron | 10.0% |
| !!! | TTATTTTATTTCGTAACAAA+CGG | + | chr6_1:6983452-6983471 | Msa0871800:intron | 15.0% |
| !!! | GTAATAAGAAATGAATATTT+TGG | - | chr6_1:6983496-6983515 | None:intergenic | 15.0% |
| !!! | TTATTTTATTTCGTAACAAA+CGG | + | chr6_1:6983452-6983471 | Msa0871800:intron | 15.0% |
| !!! | GTAATAAGAAATGAATATTT+TGG | - | chr6_1:6983496-6983515 | None:intergenic | 15.0% |
| !!! | AATCATTGACTTAAGTATAA+GGG | - | chr6_1:6982833-6982852 | None:intergenic | 20.0% |
| !! | ATAAATACAAAGTTTGATTG+TGG | - | chr6_1:6982982-6983001 | None:intergenic | 20.0% |
| !! | TCTTTACAAAAATTGAGATT+TGG | + | chr6_1:6983239-6983258 | Msa0871800:intron | 20.0% |
| !!! | TATTTTATTTCGTAACAAAC+GGG | + | chr6_1:6983453-6983472 | Msa0871800:intron | 20.0% |
| !!! | TAGAGTTTTACATAAAACAA+TGG | - | chr6_1:6983555-6983574 | None:intergenic | 20.0% |
| !!! | TAAGTTCAGTTTTATTTTAG+TGG | + | chr6_1:6983871-6983890 | Msa0871800:three_prime_UTR | 20.0% |
| !!! | AAGTTCAGTTTTATTTTAGT+GGG | + | chr6_1:6983872-6983891 | Msa0871800:three_prime_UTR | 20.0% |
| !!! | AATCATTGACTTAAGTATAA+GGG | - | chr6_1:6982833-6982852 | None:intergenic | 20.0% |
| !! | ATAAATACAAAGTTTGATTG+TGG | - | chr6_1:6982982-6983001 | None:intergenic | 20.0% |
| !! | TCTTTACAAAAATTGAGATT+TGG | + | chr6_1:6983239-6983258 | Msa0871800:intron | 20.0% |
| !!! | TATTTTATTTCGTAACAAAC+GGG | + | chr6_1:6983453-6983472 | Msa0871800:intron | 20.0% |
| !!! | TAGAGTTTTACATAAAACAA+TGG | - | chr6_1:6983555-6983574 | None:intergenic | 20.0% |
| !!! | TAAGTTCAGTTTTATTTTAG+TGG | + | chr6_1:6983871-6983890 | Msa0871800:three_prime_UTR | 20.0% |
| !!! | AAGTTCAGTTTTATTTTAGT+GGG | + | chr6_1:6983872-6983891 | Msa0871800:three_prime_UTR | 20.0% |
| !!! | GAATCATTGACTTAAGTATA+AGG | - | chr6_1:6982834-6982853 | None:intergenic | 25.0% |
| !!! | GTTTCAAAAAAACCACTTTT+AGG | + | chr6_1:6983192-6983211 | Msa0871800:intron | 25.0% |
| ! | GAAAAATGTGATTGTCATTA+GGG | + | chr6_1:6983340-6983359 | Msa0871800:intron | 25.0% |
| ! | ATGTAAAACTCTACCTTTAT+AGG | + | chr6_1:6983562-6983581 | Msa0871800:intron | 25.0% |
| !!! | GAATCATTGACTTAAGTATA+AGG | - | chr6_1:6982834-6982853 | None:intergenic | 25.0% |
| !!! | GTTTCAAAAAAACCACTTTT+AGG | + | chr6_1:6983192-6983211 | Msa0871800:intron | 25.0% |
| ! | GAAAAATGTGATTGTCATTA+GGG | + | chr6_1:6983340-6983359 | Msa0871800:intron | 25.0% |
| ! | ATGTAAAACTCTACCTTTAT+AGG | + | chr6_1:6983562-6983581 | Msa0871800:intron | 25.0% |
| ACAAGCAAACTTGTAATGTT+GGG | + | chr6_1:6982742-6982761 | Msa0871800:five_prime_UTR | 30.0% | |
| TATTACTGCATACAGTACTT+GGG | - | chr6_1:6982777-6982796 | None:intergenic | 30.0% | |
| ATATTACTGCATACAGTACT+TGG | - | chr6_1:6982778-6982797 | None:intergenic | 30.0% | |
| GTCAATGATTCGTCAATTTA+AGG | + | chr6_1:6982843-6982862 | Msa0871800:exon | 30.0% | |
| AATCAACTTAACGTTCGAAA+TGG | + | chr6_1:6982913-6982932 | Msa0871800:CDS | 30.0% | |
| GGTACAAGAAACAAATTTCA+TGG | - | chr6_1:6982961-6982980 | None:intergenic | 30.0% | |
| !!! | AGACTATTTTTTGGAACCTA+GGG | - | chr6_1:6983047-6983066 | None:intergenic | 30.0% |
| !!! | AAGACTATTTTTTGGAACCT+AGG | - | chr6_1:6983048-6983067 | None:intergenic | 30.0% |
| TAAAGAGCTTCTGTAAATGA+AGG | - | chr6_1:6983166-6983185 | None:intergenic | 30.0% | |
| CGGATAATAAATCCTAAAAG+TGG | - | chr6_1:6983207-6983226 | None:intergenic | 30.0% | |
| TGTAAAGAATCTGTAACGAA+CGG | - | chr6_1:6983227-6983246 | None:intergenic | 30.0% | |
| CGAAAAATGTGATTGTCATT+AGG | + | chr6_1:6983339-6983358 | Msa0871800:intron | 30.0% | |
| AATCACTTGTCTACCTATAA+AGG | - | chr6_1:6983578-6983597 | None:intergenic | 30.0% | |
| TGAAAACTTTGGTACATTCT+TGG | + | chr6_1:6983608-6983627 | Msa0871800:intron | 30.0% | |
| GTATTGGATGAGTATAATGT+AGG | + | chr6_1:6983661-6983680 | Msa0871800:CDS | 30.0% | |
| !! | GTAATGTTGTTGATTCAAAG+AGG | + | chr6_1:6983691-6983710 | Msa0871800:CDS | 30.0% |
| ACAAGCAAACTTGTAATGTT+GGG | + | chr6_1:6982742-6982761 | Msa0871800:five_prime_UTR | 30.0% | |
| TATTACTGCATACAGTACTT+GGG | - | chr6_1:6982777-6982796 | None:intergenic | 30.0% | |
| ATATTACTGCATACAGTACT+TGG | - | chr6_1:6982778-6982797 | None:intergenic | 30.0% | |
| GTCAATGATTCGTCAATTTA+AGG | + | chr6_1:6982843-6982862 | Msa0871800:exon | 30.0% | |
| AATCAACTTAACGTTCGAAA+TGG | + | chr6_1:6982913-6982932 | Msa0871800:CDS | 30.0% | |
| GGTACAAGAAACAAATTTCA+TGG | - | chr6_1:6982961-6982980 | None:intergenic | 30.0% | |
| !!! | AGACTATTTTTTGGAACCTA+GGG | - | chr6_1:6983047-6983066 | None:intergenic | 30.0% |
| !!! | AAGACTATTTTTTGGAACCT+AGG | - | chr6_1:6983048-6983067 | None:intergenic | 30.0% |
| TAAAGAGCTTCTGTAAATGA+AGG | - | chr6_1:6983166-6983185 | None:intergenic | 30.0% | |
| CGGATAATAAATCCTAAAAG+TGG | - | chr6_1:6983207-6983226 | None:intergenic | 30.0% | |
| TGTAAAGAATCTGTAACGAA+CGG | - | chr6_1:6983227-6983246 | None:intergenic | 30.0% | |
| CGAAAAATGTGATTGTCATT+AGG | + | chr6_1:6983339-6983358 | Msa0871800:intron | 30.0% | |
| AATCACTTGTCTACCTATAA+AGG | - | chr6_1:6983578-6983597 | None:intergenic | 30.0% | |
| TGAAAACTTTGGTACATTCT+TGG | + | chr6_1:6983608-6983627 | Msa0871800:intron | 30.0% | |
| GTATTGGATGAGTATAATGT+AGG | + | chr6_1:6983661-6983680 | Msa0871800:CDS | 30.0% | |
| !! | GTAATGTTGTTGATTCAAAG+AGG | + | chr6_1:6983691-6983710 | Msa0871800:CDS | 30.0% |
| CACAAGCAAACTTGTAATGT+TGG | + | chr6_1:6982741-6982760 | Msa0871800:five_prime_UTR | 35.0% | |
| ! | CAATTTAAGGTTGTTAGAGC+TGG | + | chr6_1:6982856-6982875 | Msa0871800:CDS | 35.0% |
| !! | AGTTGATTTGCAATCAAGTC+TGG | - | chr6_1:6982901-6982920 | None:intergenic | 35.0% |
| AAATGGAGCTCTTATTCGTA+CGG | + | chr6_1:6982930-6982949 | Msa0871800:CDS | 35.0% | |
| !!! | TTGGCAGCAAGACTATTTTT+TGG | - | chr6_1:6983056-6983075 | None:intergenic | 35.0% |
| TTTGCTGGTAATATAGTCCT+TGG | + | chr6_1:6983104-6983123 | Msa0871800:CDS | 35.0% | |
| ! | AACAATGGCATAAGAAGCAT+AGG | - | chr6_1:6983540-6983559 | None:intergenic | 35.0% |
| AACTTTGGTACATTCTTGGT+AGG | + | chr6_1:6983612-6983631 | Msa0871800:intron | 35.0% | |
| TCAAAGAGGTGATGAAAAGT+TGG | + | chr6_1:6983705-6983724 | Msa0871800:CDS | 35.0% | |
| CACAAGCAAACTTGTAATGT+TGG | + | chr6_1:6982741-6982760 | Msa0871800:five_prime_UTR | 35.0% | |
| ! | CAATTTAAGGTTGTTAGAGC+TGG | + | chr6_1:6982856-6982875 | Msa0871800:CDS | 35.0% |
| !! | AGTTGATTTGCAATCAAGTC+TGG | - | chr6_1:6982901-6982920 | None:intergenic | 35.0% |
| AAATGGAGCTCTTATTCGTA+CGG | + | chr6_1:6982930-6982949 | Msa0871800:CDS | 35.0% | |
| !!! | TTGGCAGCAAGACTATTTTT+TGG | - | chr6_1:6983056-6983075 | None:intergenic | 35.0% |
| TTTGCTGGTAATATAGTCCT+TGG | + | chr6_1:6983104-6983123 | Msa0871800:CDS | 35.0% | |
| ! | AACAATGGCATAAGAAGCAT+AGG | - | chr6_1:6983540-6983559 | None:intergenic | 35.0% |
| AACTTTGGTACATTCTTGGT+AGG | + | chr6_1:6983612-6983631 | Msa0871800:intron | 35.0% | |
| TCAAAGAGGTGATGAAAAGT+TGG | + | chr6_1:6983705-6983724 | Msa0871800:CDS | 35.0% | |
| TGTTAGAGCTGGATTGAATG+TGG | + | chr6_1:6982867-6982886 | Msa0871800:CDS | 40.0% | |
| CTCTAAACCTTATGTTCCCT+AGG | + | chr6_1:6983028-6983047 | Msa0871800:intron | 40.0% | |
| ! | TTTGGAACCTAGGGAACATA+AGG | - | chr6_1:6983038-6983057 | None:intergenic | 40.0% |
| ! | AATAGTCTTGCTGCCAAAGT+AGG | + | chr6_1:6983059-6983078 | Msa0871800:CDS | 40.0% |
| AGTGGGATTTAGTCCTACTT+TGG | - | chr6_1:6983075-6983094 | None:intergenic | 40.0% | |
| CTGCAATGATGATATCTCCA+AGG | - | chr6_1:6983124-6983143 | None:intergenic | 40.0% | |
| TTCTGTAAATGAAGGCTCAC+AGG | - | chr6_1:6983158-6983177 | None:intergenic | 40.0% | |
| ! | AGGAGAGTTGTTGAAGGTAT+TGG | + | chr6_1:6983645-6983664 | Msa0871800:CDS | 40.0% |
| TGTTAGAGCTGGATTGAATG+TGG | + | chr6_1:6982867-6982886 | Msa0871800:CDS | 40.0% | |
| CTCTAAACCTTATGTTCCCT+AGG | + | chr6_1:6983028-6983047 | Msa0871800:intron | 40.0% | |
| ! | TTTGGAACCTAGGGAACATA+AGG | - | chr6_1:6983038-6983057 | None:intergenic | 40.0% |
| ! | AATAGTCTTGCTGCCAAAGT+AGG | + | chr6_1:6983059-6983078 | Msa0871800:CDS | 40.0% |
| AGTGGGATTTAGTCCTACTT+TGG | - | chr6_1:6983075-6983094 | None:intergenic | 40.0% | |
| CTGCAATGATGATATCTCCA+AGG | - | chr6_1:6983124-6983143 | None:intergenic | 40.0% | |
| TTCTGTAAATGAAGGCTCAC+AGG | - | chr6_1:6983158-6983177 | None:intergenic | 40.0% | |
| ! | AGGAGAGTTGTTGAAGGTAT+TGG | + | chr6_1:6983645-6983664 | Msa0871800:CDS | 40.0% |
| TCTTGGTAGGTCAAGAGCAA+AGG | + | chr6_1:6983625-6983644 | Msa0871800:intron | 45.0% | |
| GAGCAAAGGAGAGTTGTTGA+AGG | + | chr6_1:6983639-6983658 | Msa0871800:CDS | 45.0% | |
| TGAAAAGTTGGAGCTGCCTA+TGG | + | chr6_1:6983717-6983736 | Msa0871800:CDS | 45.0% | |
| CTCTGTTCCTCAAGTACCAT+AGG | - | chr6_1:6983736-6983755 | None:intergenic | 45.0% | |
| TCTTGGTAGGTCAAGAGCAA+AGG | + | chr6_1:6983625-6983644 | Msa0871800:intron | 45.0% | |
| GAGCAAAGGAGAGTTGTTGA+AGG | + | chr6_1:6983639-6983658 | Msa0871800:CDS | 45.0% | |
| TGAAAAGTTGGAGCTGCCTA+TGG | + | chr6_1:6983717-6983736 | Msa0871800:CDS | 45.0% | |
| CTCTGTTCCTCAAGTACCAT+AGG | - | chr6_1:6983736-6983755 | None:intergenic | 45.0% | |
| GGACTAAATCCCACTGCAAG+AGG | + | chr6_1:6983080-6983099 | Msa0871800:CDS | 50.0% | |
| CCAGCAAATCCTCTTGCAGT+GGG | - | chr6_1:6983092-6983111 | None:intergenic | 50.0% | |
| ACCAGCAAATCCTCTTGCAG+TGG | - | chr6_1:6983093-6983112 | None:intergenic | 50.0% | |
| GGACTAAATCCCACTGCAAG+AGG | + | chr6_1:6983080-6983099 | Msa0871800:CDS | 50.0% | |
| CCAGCAAATCCTCTTGCAGT+GGG | - | chr6_1:6983092-6983111 | None:intergenic | 50.0% | |
| ACCAGCAAATCCTCTTGCAG+TGG | - | chr6_1:6983093-6983112 | None:intergenic | 50.0% | |
| CCCACTGCAAGAGGATTTGC+TGG | + | chr6_1:6983089-6983108 | Msa0871800:CDS | 55.0% | |
| GGAGCTGCCTATGGTACTTG+AGG | + | chr6_1:6983726-6983745 | Msa0871800:CDS | 55.0% | |
| CCCACTGCAAGAGGATTTGC+TGG | + | chr6_1:6983089-6983108 | Msa0871800:CDS | 55.0% | |
| GGAGCTGCCTATGGTACTTG+AGG | + | chr6_1:6983726-6983745 | Msa0871800:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 6982733 | 6983899 | 6982733 | ID=Msa0871800;Name=Msa0871800 |
| chr6_1 | mRNA | 6982733 | 6983899 | 6982733 | ID=Msa0871800-mRNA-1;Parent=Msa0871800;Name=Msa0871800-mRNA-1;_AED=0.00;_eAED=0.00;_QI=114|1|1|1|1|1|3|137|113 |
| chr6_1 | exon | 6982733 | 6982951 | 6982733 | ID=Msa0871800-mRNA-1:exon:2116;Parent=Msa0871800-mRNA-1 |
| chr6_1 | exon | 6983050 | 6983157 | 6983050 | ID=Msa0871800-mRNA-1:exon:2117;Parent=Msa0871800-mRNA-1 |
| chr6_1 | exon | 6983634 | 6983899 | 6983634 | ID=Msa0871800-mRNA-1:exon:2118;Parent=Msa0871800-mRNA-1 |
| chr6_1 | five_prime_UTR | 6982733 | 6982846 | 6982733 | ID=Msa0871800-mRNA-1:five_prime_utr;Parent=Msa0871800-mRNA-1 |
| chr6_1 | CDS | 6982847 | 6982951 | 6982847 | ID=Msa0871800-mRNA-1:cds;Parent=Msa0871800-mRNA-1 |
| chr6_1 | CDS | 6983050 | 6983157 | 6983050 | ID=Msa0871800-mRNA-1:cds;Parent=Msa0871800-mRNA-1 |
| chr6_1 | CDS | 6983634 | 6983762 | 6983634 | ID=Msa0871800-mRNA-1:cds;Parent=Msa0871800-mRNA-1 |
| chr6_1 | three_prime_UTR | 6983763 | 6983899 | 6983763 | ID=Msa0871800-mRNA-1:three_prime_utr;Parent=Msa0871800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
