Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002300 | RHN52769.1 | 85.768 | 267 | 35 | 1 | 1 | 264 | 1 | 267 | 7.90e-157 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002300 | sp|Q8VYG0|LRL13_ARATH | 31.760 | 233 | 129 | 10 | 3 | 225 | 12 | 224 | 9.29e-20 | 92.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002300 | A0A396HHG2 | 85.768 | 267 | 35 | 1 | 1 | 264 | 1 | 267 | 3.78e-157 | 447 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007010 | Msa1002300 | 0.817789 | 2.748326e-52 | -8.615850e-47 |
| Msa0610370 | Msa1002300 | 0.812182 | 4.822175e-51 | -8.615850e-47 |
| Msa0650900 | Msa1002300 | 0.809690 | 1.670291e-50 | -8.615850e-47 |
| Msa0677820 | Msa1002300 | 0.804546 | 2.051118e-49 | -8.615850e-47 |
| Msa0734660 | Msa1002300 | 0.807685 | 4.479006e-50 | -8.615850e-47 |
| Msa0750380 | Msa1002300 | 0.803651 | 3.149458e-49 | -8.615850e-47 |
| Msa0776220 | Msa1002300 | 0.800432 | 1.445470e-48 | -8.615850e-47 |
| Msa0149170 | Msa1002300 | 0.824015 | 1.014576e-53 | -8.615850e-47 |
| Msa0153430 | Msa1002300 | 0.805699 | 1.176656e-49 | -8.615850e-47 |
| Msa0431830 | Msa1002300 | 0.804280 | 2.330509e-49 | -8.615850e-47 |
| Msa0452410 | Msa1002300 | 0.831122 | 1.996537e-55 | -8.615850e-47 |
| Msa0458700 | Msa1002300 | 0.839207 | 1.819378e-57 | -8.615850e-47 |
| Msa1002300 | Msa1020720 | 0.801496 | 8.760217e-49 | -8.615850e-47 |
| Msa1002300 | Msa1027240 | 0.819947 | 8.884940e-53 | -8.615850e-47 |
| Msa1002300 | Msa1050480 | 0.803529 | 3.337382e-49 | -8.615850e-47 |
| Msa1002300 | Msa1073500 | 0.800582 | 1.346921e-48 | -8.615850e-47 |
| Msa1002300 | Msa1095480 | 0.800960 | 1.127939e-48 | -8.615850e-47 |
| Msa1002300 | Msa1198090 | 0.836292 | 1.019597e-56 | -8.615850e-47 |
| Msa1002300 | Msa1233500 | 0.800199 | 1.612077e-48 | -8.615850e-47 |
| Msa1002300 | Msa1252070 | 0.803636 | 3.171310e-49 | -8.615850e-47 |
| Msa1002300 | Msa1275770 | 0.825110 | 5.603807e-54 | -8.615850e-47 |
| Msa1002300 | Msa1280130 | 0.807260 | 5.512929e-50 | -8.615850e-47 |
| Msa1002300 | Msa1287560 | 0.820668 | 6.074441e-53 | -8.615850e-47 |
| Msa1002300 | Msa1287700 | 0.801539 | 8.582957e-49 | -8.615850e-47 |
| Msa1002300 | Msa1369530 | 0.801409 | 9.126514e-49 | -8.615850e-47 |
| Msa1002300 | Msa1419010 | 0.808651 | 2.789456e-50 | -8.615850e-47 |
| Msa0273570 | Msa1002300 | 0.824796 | 6.647525e-54 | -8.615850e-47 |
| Msa0274520 | Msa1002300 | 0.807126 | 5.885865e-50 | -8.615850e-47 |
| Msa0280490 | Msa1002300 | 0.812308 | 4.526644e-51 | -8.615850e-47 |
| Msa0313920 | Msa1002300 | 0.804483 | 2.114507e-49 | -8.615850e-47 |
| Msa0344830 | Msa1002300 | 0.808137 | 3.590238e-50 | -8.615850e-47 |
| Msa0555950 | Msa1002300 | 0.820091 | 8.237194e-53 | -8.615850e-47 |
| Msa0580610 | Msa1002300 | 0.802311 | 5.957569e-49 | -8.615850e-47 |
| Msa0594430 | Msa1002300 | 0.830168 | 3.418692e-55 | -8.615850e-47 |
| Msa0870620 | Msa1002300 | 0.808567 | 2.907492e-50 | -8.615850e-47 |
| Msa0898350 | Msa1002300 | 0.814907 | 1.212717e-51 | -8.615850e-47 |
| Msa0898370 | Msa1002300 | 0.983113 | 7.300158e-157 | -8.615850e-47 |
| Msa0903730 | Msa1002300 | 0.802806 | 4.710035e-49 | -8.615850e-47 |
| Msa0950620 | Msa1002300 | 0.803815 | 2.910986e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002300 | MtrunA17_Chr6g0484061 | 85.768 | 267 | 35 | 1 | 1 | 264 | 1 | 267 | 7.27e-161 | 447 |
| Msa1002300 | MtrunA17_Chr6g0467631 | 57.471 | 261 | 83 | 7 | 5 | 246 | 11 | 262 | 2.58e-87 | 273 |
| Msa1002300 | MtrunA17_Chr6g0484051 | 52.529 | 257 | 95 | 7 | 23 | 256 | 23 | 275 | 3.04e-75 | 241 |
| Msa1002300 | MtrunA17_Chr6g0483931 | 51.321 | 265 | 104 | 8 | 4 | 246 | 10 | 271 | 3.19e-74 | 239 |
| Msa1002300 | MtrunA17_Chr6g0483821 | 51.471 | 272 | 104 | 8 | 1 | 249 | 7 | 273 | 3.85e-72 | 233 |
| Msa1002300 | MtrunA17_Chr6g0483901 | 49.333 | 225 | 91 | 6 | 4 | 212 | 10 | 227 | 3.05e-60 | 191 |
| Msa1002300 | MtrunA17_Chr8g0376061 | 35.102 | 245 | 129 | 10 | 32 | 258 | 24 | 256 | 4.28e-28 | 112 |
| Msa1002300 | MtrunA17_Chr8g0391231 | 32.721 | 272 | 147 | 10 | 8 | 256 | 1 | 259 | 2.53e-27 | 110 |
| Msa1002300 | MtrunA17_Chr6g0484081 | 55.056 | 89 | 33 | 3 | 27 | 110 | 26 | 112 | 3.54e-22 | 88.6 |
| Msa1002300 | MtrunA17_Chr6g0467591 | 56.338 | 71 | 26 | 1 | 5 | 75 | 30 | 95 | 7.46e-21 | 84.7 |
| Msa1002300 | MtrunA17_Chr7g0251131 | 25.620 | 242 | 163 | 8 | 10 | 242 | 6 | 239 | 1.95e-18 | 82.4 |
| Msa1002300 | MtrunA17_Chr7g0251011 | 25.820 | 244 | 164 | 8 | 8 | 242 | 7 | 242 | 3.34e-18 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002300 | AT5G38210.1 | 31.760 | 233 | 129 | 10 | 3 | 225 | 12 | 224 | 9.44e-21 | 92.0 |
| Msa1002300 | AT1G67000.1 | 32.444 | 225 | 124 | 11 | 44 | 256 | 38 | 246 | 8.20e-19 | 86.3 |
| Msa1002300 | AT1G66940.2 | 32.796 | 186 | 116 | 7 | 44 | 224 | 37 | 218 | 2.84e-18 | 83.2 |
| Msa1002300 | AT1G66940.3 | 32.796 | 186 | 116 | 7 | 44 | 224 | 37 | 218 | 2.84e-18 | 83.2 |
| Msa1002300 | AT1G66940.1 | 32.796 | 186 | 116 | 7 | 44 | 224 | 37 | 218 | 3.13e-18 | 83.2 |
| Msa1002300 | AT1G66940.4 | 32.796 | 186 | 116 | 7 | 44 | 224 | 37 | 218 | 4.85e-18 | 82.8 |
| Msa1002300 | AT1G66880.1 | 32.663 | 199 | 99 | 9 | 43 | 224 | 23 | 203 | 1.67e-17 | 82.4 |
| Msa1002300 | AT1G66880.1 | 28.704 | 216 | 121 | 9 | 22 | 224 | 400 | 595 | 1.04e-13 | 71.2 |
| Msa1002300 | AT1G66930.2 | 31.980 | 197 | 103 | 10 | 44 | 225 | 37 | 217 | 3.36e-15 | 75.5 |
| Msa1002300 | AT1G66930.2 | 26.766 | 269 | 142 | 13 | 15 | 250 | 231 | 477 | 8.67e-12 | 65.5 |
| Msa1002300 | AT5G38250.1 | 30.052 | 193 | 113 | 7 | 44 | 223 | 41 | 224 | 1.89e-14 | 73.2 |
| Msa1002300 | AT1G66920.3 | 31.373 | 204 | 102 | 12 | 41 | 225 | 34 | 218 | 6.07e-14 | 71.6 |
| Msa1002300 | AT1G66920.1 | 31.373 | 204 | 102 | 12 | 41 | 225 | 34 | 218 | 6.09e-14 | 71.6 |
| Msa1002300 | AT1G66920.2 | 31.373 | 204 | 102 | 12 | 41 | 225 | 34 | 218 | 6.12e-14 | 71.6 |
| Msa1002300 | AT1G66880.3 | 29.442 | 197 | 112 | 8 | 41 | 224 | 34 | 216 | 2.86e-13 | 69.7 |
| Msa1002300 | AT1G66880.2 | 29.442 | 197 | 112 | 8 | 41 | 224 | 34 | 216 | 3.13e-13 | 69.7 |
| Msa1002300 | AT5G38240.1 | 33.523 | 176 | 105 | 7 | 44 | 212 | 41 | 211 | 1.17e-12 | 67.8 |
| Msa1002300 | AT5G38240.2 | 33.523 | 176 | 105 | 7 | 44 | 212 | 41 | 211 | 1.35e-12 | 67.8 |
| Msa1002300 | AT1G67025.1 | 25.352 | 213 | 133 | 8 | 49 | 241 | 14 | 220 | 7.42e-11 | 60.8 |
Find 47 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTGTTCGAGTGATTATT+TGG | 0.242766 | 6_4:-87905977 | Msa1002300:CDS |
| CCAACATCGAATATCCATTC+TGG | 0.249841 | 6_4:-87906494 | Msa1002300:CDS |
| CTGTGGCAGTTAAGGTAAAA+TGG | 0.256708 | 6_4:+87906435 | None:intergenic |
| TGAGGGATGTTTAAATTGTT+TGG | 0.284486 | 6_4:-87906010 | Msa1002300:CDS |
| TGAGGATCTTGAAAATGATT+TGG | 0.287118 | 6_4:-87906064 | Msa1002300:CDS |
| AAAGAGATATATGTAATGTT+TGG | 0.298188 | 6_4:+87906636 | None:intergenic |
| GAGGGATGTTTAAATTGTTT+GGG | 0.317526 | 6_4:-87906009 | Msa1002300:CDS |
| GTCTGTTCTCTTGAGTTTGA+TGG | 0.330549 | 6_4:+87906341 | None:intergenic |
| TACTGTTGCTGTGGCAGTTA+AGG | 0.347160 | 6_4:+87906427 | None:intergenic |
| AAGAGATATATGTAATGTTT+GGG | 0.405412 | 6_4:+87906637 | None:intergenic |
| TTAAATTGTTTGGGAAATGA+AGG | 0.425334 | 6_4:-87906000 | Msa1002300:CDS |
| TTGCCCGCGCCGCAGTTAAA+CGG | 0.436874 | 6_4:+87906459 | None:intergenic |
| TGATTTGGACAAGGGATTTG+AGG | 0.442955 | 6_4:-87906049 | Msa1002300:CDS |
| CATCTTGAATAATCGTGAAC+TGG | 0.446986 | 6_4:+87906555 | None:intergenic |
| GGAAATATTTCCGCAGTTGT+AGG | 0.451508 | 6_4:+87906515 | None:intergenic |
| CGTCCGTTTAACTGCGGCGC+GGG | 0.453234 | 6_4:-87906462 | Msa1002300:CDS |
| AATCGTGAACTGGTTGAGAC+TGG | 0.453887 | 6_4:+87906565 | None:intergenic |
| CAACATCGAATATCCATTCT+GGG | 0.459645 | 6_4:-87906493 | Msa1002300:CDS |
| CGGCACATTGGAATAAGAAA+AGG | 0.491831 | 6_4:+87906155 | None:intergenic |
| CTTGAAAATGATTTGGACAA+GGG | 0.508385 | 6_4:-87906057 | Msa1002300:CDS |
| TTTGGACAAGGGATTTGAGG+TGG | 0.548996 | 6_4:-87906046 | Msa1002300:CDS |
| TATTTCCGCAGTTGTAGGAA+TGG | 0.549324 | 6_4:+87906520 | None:intergenic |
| TTATTATCAATAGACCCGTC+TGG | 0.550836 | 6_4:+87905919 | None:intergenic |
| TGTGGCAGTTAAGGTAAAAT+GGG | 0.557819 | 6_4:+87906436 | None:intergenic |
| ATGTCTATGATGTGGACACT+TGG | 0.571414 | 6_4:+87906249 | None:intergenic |
| ATCGTGAACTGGTTGAGACT+GGG | 0.573683 | 6_4:+87906566 | None:intergenic |
| TATTATGATAATTGTCCAGA+CGG | 0.576682 | 6_4:-87905934 | Msa1002300:CDS |
| AAGAAAGTATCATTGTATTG+AGG | 0.582725 | 6_4:+87906297 | None:intergenic |
| CCAGAATGGATATTCGATGT+TGG | 0.584250 | 6_4:+87906494 | None:intergenic |
| GAAAACATACTATTGTGAAG+AGG | 0.589810 | 6_4:+87905889 | None:intergenic |
| GGTTGAGACTGGGATTGTGT+TGG | 0.602896 | 6_4:+87906576 | None:intergenic |
| ATTATGATAATTGTCCAGAC+GGG | 0.606325 | 6_4:-87905933 | Msa1002300:CDS |
| GGTGGAATACAGTGTGAATG+AGG | 0.607769 | 6_4:-87906028 | Msa1002300:CDS |
| TCTTGAAAATGATTTGGACA+AGG | 0.608964 | 6_4:-87906058 | Msa1002300:CDS |
| GTCGACCATTCCTACAACTG+CGG | 0.613126 | 6_4:-87906525 | Msa1002300:CDS |
| TTACTTAATAAATCTCTGTG+TGG | 0.616919 | 6_4:-87906192 | Msa1002300:CDS |
| AAACATATTGAAGTGCGCGT+AGG | 0.643061 | 6_4:-87906099 | Msa1002300:CDS |
| TGTCTATGATGTGGACACTT+GGG | 0.647464 | 6_4:+87906250 | None:intergenic |
| GTGGAATACAGTGTGAATGA+GGG | 0.649851 | 6_4:-87906027 | Msa1002300:CDS |
| TGTAGTATATGTCTATGATG+TGG | 0.655187 | 6_4:+87906241 | None:intergenic |
| TGGTAGTAATACTGTTGCTG+TGG | 0.674755 | 6_4:+87906418 | None:intergenic |
| CAAAATCGTCCGTTTAACTG+CGG | 0.685993 | 6_4:-87906468 | Msa1002300:CDS |
| CGTAGGAGAAGATAATTCTG+AGG | 0.690250 | 6_4:-87906082 | Msa1002300:CDS |
| AACATCGAATATCCATTCTG+GGG | 0.702136 | 6_4:-87906492 | Msa1002300:CDS |
| ACATTGGAATAAGAAAAGGA+AGG | 0.711357 | 6_4:+87906159 | None:intergenic |
| CTATGATGTGGACACTTGGG+AGG | 0.726349 | 6_4:+87906253 | None:intergenic |
| TCGTCCGTTTAACTGCGGCG+CGG | 0.733230 | 6_4:-87906463 | Msa1002300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAGATATATGTAATGTTT+GGG | + | chr6_4:87905878-87905897 | None:intergenic | 20.0% |
| !! | AAAGAGATATATGTAATGTT+TGG | + | chr6_4:87905879-87905898 | None:intergenic | 20.0% |
| !!! | ATTTTGTGATGATAATAGAA+TGG | + | chr6_4:87906117-87906136 | None:intergenic | 20.0% |
| !! | AAGAGATATATGTAATGTTT+GGG | + | chr6_4:87905878-87905897 | None:intergenic | 20.0% |
| !! | AAAGAGATATATGTAATGTT+TGG | + | chr6_4:87905879-87905898 | None:intergenic | 20.0% |
| !!! | ATTTTGTGATGATAATAGAA+TGG | + | chr6_4:87906117-87906136 | None:intergenic | 20.0% |
| !! | TTGAGGAGAACAAAAATTTT+GGG | + | chr6_4:87906201-87906220 | None:intergenic | 25.0% |
| !! | ATTGAGGAGAACAAAAATTT+TGG | + | chr6_4:87906202-87906221 | None:intergenic | 25.0% |
| !!! | AAGAAAGTATCATTGTATTG+AGG | + | chr6_4:87906218-87906237 | None:intergenic | 25.0% |
| ! | TTACTTAATAAATCTCTGTG+TGG | - | chr6_4:87906320-87906339 | Msa1002300:CDS | 25.0% |
| ! | TTAAATTGTTTGGGAAATGA+AGG | - | chr6_4:87906512-87906531 | Msa1002300:CDS | 25.0% |
| ! | ATATTGTTCGAGTGATTATT+TGG | - | chr6_4:87906535-87906554 | Msa1002300:CDS | 25.0% |
| ! | TATTATGATAATTGTCCAGA+CGG | - | chr6_4:87906578-87906597 | Msa1002300:CDS | 25.0% |
| !! | TTGAGGAGAACAAAAATTTT+GGG | + | chr6_4:87906201-87906220 | None:intergenic | 25.0% |
| !! | ATTGAGGAGAACAAAAATTT+TGG | + | chr6_4:87906202-87906221 | None:intergenic | 25.0% |
| !!! | AAGAAAGTATCATTGTATTG+AGG | + | chr6_4:87906218-87906237 | None:intergenic | 25.0% |
| ! | TTACTTAATAAATCTCTGTG+TGG | - | chr6_4:87906320-87906339 | Msa1002300:CDS | 25.0% |
| ! | TTAAATTGTTTGGGAAATGA+AGG | - | chr6_4:87906512-87906531 | Msa1002300:CDS | 25.0% |
| ! | ATATTGTTCGAGTGATTATT+TGG | - | chr6_4:87906535-87906554 | Msa1002300:CDS | 25.0% |
| ! | TATTATGATAATTGTCCAGA+CGG | - | chr6_4:87906578-87906597 | Msa1002300:CDS | 25.0% |
| !! | GAGAACAAAAATTTTGGGAA+AGG | + | chr6_4:87906196-87906215 | None:intergenic | 30.0% |
| TGTAGTATATGTCTATGATG+TGG | + | chr6_4:87906274-87906293 | None:intergenic | 30.0% | |
| ACATTGGAATAAGAAAAGGA+AGG | + | chr6_4:87906356-87906375 | None:intergenic | 30.0% | |
| ! | TGATCTAGATTTTCGTCATA+CGG | + | chr6_4:87906380-87906399 | None:intergenic | 30.0% |
| TGAGGATCTTGAAAATGATT+TGG | - | chr6_4:87906448-87906467 | Msa1002300:CDS | 30.0% | |
| ! | TCTTGAAAATGATTTGGACA+AGG | - | chr6_4:87906454-87906473 | Msa1002300:CDS | 30.0% |
| ! | CTTGAAAATGATTTGGACAA+GGG | - | chr6_4:87906455-87906474 | Msa1002300:CDS | 30.0% |
| TGAGGGATGTTTAAATTGTT+TGG | - | chr6_4:87906502-87906521 | Msa1002300:CDS | 30.0% | |
| GAGGGATGTTTAAATTGTTT+GGG | - | chr6_4:87906503-87906522 | Msa1002300:CDS | 30.0% | |
| ATTATGATAATTGTCCAGAC+GGG | - | chr6_4:87906579-87906598 | Msa1002300:CDS | 30.0% | |
| GAAAACATACTATTGTGAAG+AGG | + | chr6_4:87906626-87906645 | None:intergenic | 30.0% | |
| !! | GAGAACAAAAATTTTGGGAA+AGG | + | chr6_4:87906196-87906215 | None:intergenic | 30.0% |
| TGTAGTATATGTCTATGATG+TGG | + | chr6_4:87906274-87906293 | None:intergenic | 30.0% | |
| ACATTGGAATAAGAAAAGGA+AGG | + | chr6_4:87906356-87906375 | None:intergenic | 30.0% | |
| ! | TGATCTAGATTTTCGTCATA+CGG | + | chr6_4:87906380-87906399 | None:intergenic | 30.0% |
| TGAGGATCTTGAAAATGATT+TGG | - | chr6_4:87906448-87906467 | Msa1002300:CDS | 30.0% | |
| ! | TCTTGAAAATGATTTGGACA+AGG | - | chr6_4:87906454-87906473 | Msa1002300:CDS | 30.0% |
| ! | CTTGAAAATGATTTGGACAA+GGG | - | chr6_4:87906455-87906474 | Msa1002300:CDS | 30.0% |
| TGAGGGATGTTTAAATTGTT+TGG | - | chr6_4:87906502-87906521 | Msa1002300:CDS | 30.0% | |
| GAGGGATGTTTAAATTGTTT+GGG | - | chr6_4:87906503-87906522 | Msa1002300:CDS | 30.0% | |
| ATTATGATAATTGTCCAGAC+GGG | - | chr6_4:87906579-87906598 | Msa1002300:CDS | 30.0% | |
| GAAAACATACTATTGTGAAG+AGG | + | chr6_4:87906626-87906645 | None:intergenic | 30.0% | |
| CATCTTGAATAATCGTGAAC+TGG | + | chr6_4:87905960-87905979 | None:intergenic | 35.0% | |
| CAACATCGAATATCCATTCT+GGG | - | chr6_4:87906019-87906038 | Msa1002300:CDS | 35.0% | |
| AACATCGAATATCCATTCTG+GGG | - | chr6_4:87906020-87906039 | Msa1002300:CDS | 35.0% | |
| TGTGGCAGTTAAGGTAAAAT+GGG | + | chr6_4:87906079-87906098 | None:intergenic | 35.0% | |
| !!! | GGGAGGTACTGAAATATTTT+TGG | + | chr6_4:87906245-87906264 | None:intergenic | 35.0% |
| TTATTATCAATAGACCCGTC+TGG | + | chr6_4:87906596-87906615 | None:intergenic | 35.0% | |
| CATCTTGAATAATCGTGAAC+TGG | + | chr6_4:87905960-87905979 | None:intergenic | 35.0% | |
| CAACATCGAATATCCATTCT+GGG | - | chr6_4:87906019-87906038 | Msa1002300:CDS | 35.0% | |
| AACATCGAATATCCATTCTG+GGG | - | chr6_4:87906020-87906039 | Msa1002300:CDS | 35.0% | |
| TGTGGCAGTTAAGGTAAAAT+GGG | + | chr6_4:87906079-87906098 | None:intergenic | 35.0% | |
| !!! | GGGAGGTACTGAAATATTTT+TGG | + | chr6_4:87906245-87906264 | None:intergenic | 35.0% |
| TTATTATCAATAGACCCGTC+TGG | + | chr6_4:87906596-87906615 | None:intergenic | 35.0% | |
| TATTTCCGCAGTTGTAGGAA+TGG | + | chr6_4:87905995-87906014 | None:intergenic | 40.0% | |
| GGAAATATTTCCGCAGTTGT+AGG | + | chr6_4:87906000-87906019 | None:intergenic | 40.0% | |
| CCAGAATGGATATTCGATGT+TGG | + | chr6_4:87906021-87906040 | None:intergenic | 40.0% | |
| CCAACATCGAATATCCATTC+TGG | - | chr6_4:87906018-87906037 | Msa1002300:CDS | 40.0% | |
| CAAAATCGTCCGTTTAACTG+CGG | - | chr6_4:87906044-87906063 | Msa1002300:CDS | 40.0% | |
| CTGTGGCAGTTAAGGTAAAA+TGG | + | chr6_4:87906080-87906099 | None:intergenic | 40.0% | |
| TGGTAGTAATACTGTTGCTG+TGG | + | chr6_4:87906097-87906116 | None:intergenic | 40.0% | |
| GTCTGTTCTCTTGAGTTTGA+TGG | + | chr6_4:87906174-87906193 | None:intergenic | 40.0% | |
| TGTCTATGATGTGGACACTT+GGG | + | chr6_4:87906265-87906284 | None:intergenic | 40.0% | |
| ATGTCTATGATGTGGACACT+TGG | + | chr6_4:87906266-87906285 | None:intergenic | 40.0% | |
| CGGCACATTGGAATAAGAAA+AGG | + | chr6_4:87906360-87906379 | None:intergenic | 40.0% | |
| ! | ATTTTCGTCATACGGCACAT+TGG | + | chr6_4:87906372-87906391 | None:intergenic | 40.0% |
| AAACATATTGAAGTGCGCGT+AGG | - | chr6_4:87906413-87906432 | Msa1002300:CDS | 40.0% | |
| CGTAGGAGAAGATAATTCTG+AGG | - | chr6_4:87906430-87906449 | Msa1002300:CDS | 40.0% | |
| ! | TGATTTGGACAAGGGATTTG+AGG | - | chr6_4:87906463-87906482 | Msa1002300:CDS | 40.0% |
| GTGGAATACAGTGTGAATGA+GGG | - | chr6_4:87906485-87906504 | Msa1002300:CDS | 40.0% | |
| TATTTCCGCAGTTGTAGGAA+TGG | + | chr6_4:87905995-87906014 | None:intergenic | 40.0% | |
| GGAAATATTTCCGCAGTTGT+AGG | + | chr6_4:87906000-87906019 | None:intergenic | 40.0% | |
| CCAGAATGGATATTCGATGT+TGG | + | chr6_4:87906021-87906040 | None:intergenic | 40.0% | |
| CCAACATCGAATATCCATTC+TGG | - | chr6_4:87906018-87906037 | Msa1002300:CDS | 40.0% | |
| CAAAATCGTCCGTTTAACTG+CGG | - | chr6_4:87906044-87906063 | Msa1002300:CDS | 40.0% | |
| CTGTGGCAGTTAAGGTAAAA+TGG | + | chr6_4:87906080-87906099 | None:intergenic | 40.0% | |
| TGGTAGTAATACTGTTGCTG+TGG | + | chr6_4:87906097-87906116 | None:intergenic | 40.0% | |
| GTCTGTTCTCTTGAGTTTGA+TGG | + | chr6_4:87906174-87906193 | None:intergenic | 40.0% | |
| TGTCTATGATGTGGACACTT+GGG | + | chr6_4:87906265-87906284 | None:intergenic | 40.0% | |
| ATGTCTATGATGTGGACACT+TGG | + | chr6_4:87906266-87906285 | None:intergenic | 40.0% | |
| CGGCACATTGGAATAAGAAA+AGG | + | chr6_4:87906360-87906379 | None:intergenic | 40.0% | |
| ! | ATTTTCGTCATACGGCACAT+TGG | + | chr6_4:87906372-87906391 | None:intergenic | 40.0% |
| AAACATATTGAAGTGCGCGT+AGG | - | chr6_4:87906413-87906432 | Msa1002300:CDS | 40.0% | |
| CGTAGGAGAAGATAATTCTG+AGG | - | chr6_4:87906430-87906449 | Msa1002300:CDS | 40.0% | |
| ! | TGATTTGGACAAGGGATTTG+AGG | - | chr6_4:87906463-87906482 | Msa1002300:CDS | 40.0% |
| GTGGAATACAGTGTGAATGA+GGG | - | chr6_4:87906485-87906504 | Msa1002300:CDS | 40.0% | |
| ATCGTGAACTGGTTGAGACT+GGG | + | chr6_4:87905949-87905968 | None:intergenic | 45.0% | |
| AATCGTGAACTGGTTGAGAC+TGG | + | chr6_4:87905950-87905969 | None:intergenic | 45.0% | |
| TACTGTTGCTGTGGCAGTTA+AGG | + | chr6_4:87906088-87906107 | None:intergenic | 45.0% | |
| TTTGGACAAGGGATTTGAGG+TGG | - | chr6_4:87906466-87906485 | Msa1002300:CDS | 45.0% | |
| GGTGGAATACAGTGTGAATG+AGG | - | chr6_4:87906484-87906503 | Msa1002300:CDS | 45.0% | |
| ATCGTGAACTGGTTGAGACT+GGG | + | chr6_4:87905949-87905968 | None:intergenic | 45.0% | |
| AATCGTGAACTGGTTGAGAC+TGG | + | chr6_4:87905950-87905969 | None:intergenic | 45.0% | |
| TACTGTTGCTGTGGCAGTTA+AGG | + | chr6_4:87906088-87906107 | None:intergenic | 45.0% | |
| TTTGGACAAGGGATTTGAGG+TGG | - | chr6_4:87906466-87906485 | Msa1002300:CDS | 45.0% | |
| GGTGGAATACAGTGTGAATG+AGG | - | chr6_4:87906484-87906503 | Msa1002300:CDS | 45.0% | |
| GGTTGAGACTGGGATTGTGT+TGG | + | chr6_4:87905939-87905958 | None:intergenic | 50.0% | |
| GTCGACCATTCCTACAACTG+CGG | - | chr6_4:87905987-87906006 | Msa1002300:CDS | 50.0% | |
| ! | GGACGATTTTGTCCCCAGAA+TGG | + | chr6_4:87906035-87906054 | None:intergenic | 50.0% |
| CTATGATGTGGACACTTGGG+AGG | + | chr6_4:87906262-87906281 | None:intergenic | 50.0% | |
| GGTTGAGACTGGGATTGTGT+TGG | + | chr6_4:87905939-87905958 | None:intergenic | 50.0% | |
| GTCGACCATTCCTACAACTG+CGG | - | chr6_4:87905987-87906006 | Msa1002300:CDS | 50.0% | |
| ! | GGACGATTTTGTCCCCAGAA+TGG | + | chr6_4:87906035-87906054 | None:intergenic | 50.0% |
| CTATGATGTGGACACTTGGG+AGG | + | chr6_4:87906262-87906281 | None:intergenic | 50.0% | |
| TCGTCCGTTTAACTGCGGCG+CGG | - | chr6_4:87906049-87906068 | Msa1002300:CDS | 60.0% | |
| TTGCCCGCGCCGCAGTTAAA+CGG | + | chr6_4:87906056-87906075 | None:intergenic | 60.0% | |
| TCGTCCGTTTAACTGCGGCG+CGG | - | chr6_4:87906049-87906068 | Msa1002300:CDS | 60.0% | |
| TTGCCCGCGCCGCAGTTAAA+CGG | + | chr6_4:87906056-87906075 | None:intergenic | 60.0% | |
| CGTCCGTTTAACTGCGGCGC+GGG | - | chr6_4:87906050-87906069 | Msa1002300:CDS | 65.0% | |
| CGTCCGTTTAACTGCGGCGC+GGG | - | chr6_4:87906050-87906069 | Msa1002300:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 87905870 | 87906664 | 87905870 | ID=Msa1002300;Name=Msa1002300 |
| chr6_4 | mRNA | 87905870 | 87906664 | 87905870 | ID=Msa1002300-mRNA-1;Parent=Msa1002300;Name=Msa1002300-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|-1|0|1|-1|1|1|0|264 |
| chr6_4 | exon | 87905870 | 87906664 | 87905870 | ID=Msa1002300-mRNA-1:exon:17144;Parent=Msa1002300-mRNA-1 |
| chr6_4 | CDS | 87905870 | 87906664 | 87905870 | ID=Msa1002300-mRNA-1:cds;Parent=Msa1002300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
