Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149170 | PNX78750.1 | 65.169 | 89 | 31 | 0 | 12 | 100 | 24 | 112 | 9.73e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149170 | A0A2K3LJN2 | 65.169 | 89 | 31 | 0 | 12 | 100 | 24 | 112 | 4.65e-30 | 119 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007010 | Msa0149170 | 0.986700 | 1.134126e-167 | -8.615850e-47 |
| Msa0149170 | Msa0389310 | 0.805475 | 1.311373e-49 | -8.615850e-47 |
| Msa0149170 | Msa0405770 | 0.803247 | 3.818443e-49 | -8.615850e-47 |
| Msa0149170 | Msa0452410 | 0.811714 | 6.096822e-51 | -8.615850e-47 |
| Msa0149170 | Msa0458700 | 0.823511 | 1.331395e-53 | -8.615850e-47 |
| Msa0149170 | Msa0484690 | 0.822808 | 1.942510e-53 | -8.615850e-47 |
| Msa0149170 | Msa0898370 | 0.819164 | 1.340801e-52 | -8.615850e-47 |
| Msa0149170 | Msa1002300 | 0.824015 | 1.014576e-53 | -8.615850e-47 |
| Msa0149170 | Msa1009270 | 0.807672 | 4.508077e-50 | -8.615850e-47 |
| Msa0149170 | Msa1198090 | 0.820703 | 5.962500e-53 | -8.615850e-47 |
| Msa0149170 | Msa1312650 | 0.814509 | 1.485623e-51 | -8.615850e-47 |
| Msa0149170 | Msa1374440 | 0.825271 | 5.135193e-54 | -8.615850e-47 |
| Msa0149170 | Msa1384320 | 0.811495 | 6.805035e-51 | -8.615850e-47 |
| Msa0149170 | Msa1422270 | 0.808183 | 3.510423e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 21 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGTTCTTAACCGCATAAA+AGG | 0.320939 | 1_4:+9735743 | Msa0149170:CDS |
| GATTAACACTAGTACTGATT+TGG | 0.322977 | 1_4:-9733641 | None:intergenic |
| CTCTTAAATGCTCAGATAGA+TGG | 0.337672 | 1_4:+9733850 | Msa0149170:CDS |
| CACTGTTGCAGAGTGTTGTT+AGG | 0.389448 | 1_4:-9733821 | None:intergenic |
| CAAAATAGTAGTTTGCTAGT+TGG | 0.415953 | 1_4:-9733782 | None:intergenic |
| AAAAGAACAAACGCAGCAAC+AGG | 0.455703 | 1_4:+9733998 | Msa0149170:CDS |
| GCATTTGTGACAACAAGAAA+GGG | 0.479862 | 1_4:+9735614 | Msa0149170:CDS |
| AGCATTTGTGACAACAAGAA+AGG | 0.501921 | 1_4:+9735613 | Msa0149170:CDS |
| ACACTATCCGAGTTTGTGTA+AGG | 0.524461 | 1_4:-9735385 | None:intergenic |
| TTGAGTCAACTACAATCAAA+CGG | 0.537488 | 1_4:+9733756 | Msa0149170:CDS |
| GACATGGTCGTGACTCAACC+TGG | 0.550958 | 1_4:+9735430 | Msa0149170:CDS |
| GGACTCATCAAGACATGATG+TGG | 0.558796 | 1_4:+9734019 | Msa0149170:CDS |
| ACAAATGTAGTCTGATGTCA+AGG | 0.571319 | 1_4:-9734064 | None:intergenic |
| GACTCATCAAGACATGATGT+GGG | 0.575048 | 1_4:+9734020 | Msa0149170:CDS |
| TAGTCTACCTTACACAAACT+CGG | 0.623075 | 1_4:+9735378 | Msa0149170:CDS |
| CATTTGTGACAACAAGAAAG+GGG | 0.639174 | 1_4:+9735615 | Msa0149170:CDS |
| ATTTGTGACAACAAGAAAGG+GGG | 0.639842 | 1_4:+9735616 | Msa0149170:CDS |
| CTCATCAAGACATGATGTGG+GGG | 0.642481 | 1_4:+9734022 | Msa0149170:CDS |
| GTGTTGTTAGGATGACGCCT+TGG | 0.647288 | 1_4:-9733809 | None:intergenic |
| ACTCATCAAGACATGATGTG+GGG | 0.675389 | 1_4:+9734021 | Msa0149170:CDS |
| ACATCTTAAAGAAAGCGACA+TGG | 0.716213 | 1_4:+9735414 | Msa0149170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCCTAAATTATAAATTATAT+TGG | + | chr1_4:9734229-9734248 | Msa0149170:intron | 10.0% |
| !! | ACCAATATAATTTATAATTT+AGG | - | chr1_4:9734233-9734252 | None:intergenic | 10.0% |
| !! | AAATAAAAGAAAATAGTAAA+TGG | + | chr1_4:9734356-9734375 | Msa0149170:intron | 10.0% |
| !! | TCCTAAATTATAAATTATAT+TGG | + | chr1_4:9734229-9734248 | Msa0149170:intron | 10.0% |
| !! | ACCAATATAATTTATAATTT+AGG | - | chr1_4:9734233-9734252 | None:intergenic | 10.0% |
| !! | AAATAAAAGAAAATAGTAAA+TGG | + | chr1_4:9734356-9734375 | Msa0149170:intron | 10.0% |
| !!! | AAATGTGATTAATTTTGTAT+GGG | + | chr1_4:9734269-9734288 | Msa0149170:intron | 15.0% |
| !! | GATTCATTGATATTATAAAA+CGG | + | chr1_4:9734408-9734427 | Msa0149170:intron | 15.0% |
| !! | TAGTAAGTGTTTATATAAAT+GGG | + | chr1_4:9734715-9734734 | Msa0149170:intron | 15.0% |
| !! | ATTAAACCATATTTAATTGA+GGG | + | chr1_4:9735270-9735289 | Msa0149170:intron | 15.0% |
| !!! | GTGACATTTTTAAATTTTTA+AGG | + | chr1_4:9735647-9735666 | Msa0149170:intron | 15.0% |
| !!! | CATTTTTAAATTTTTAAGGT+TGG | + | chr1_4:9735651-9735670 | Msa0149170:intron | 15.0% |
| !! | TCAAATAAAAACTAGATAAA+AGG | + | chr1_4:9735691-9735710 | Msa0149170:intron | 15.0% |
| !!! | AAATGTGATTAATTTTGTAT+GGG | + | chr1_4:9734269-9734288 | Msa0149170:intron | 15.0% |
| !! | GATTCATTGATATTATAAAA+CGG | + | chr1_4:9734408-9734427 | Msa0149170:intron | 15.0% |
| !! | TAGTAAGTGTTTATATAAAT+GGG | + | chr1_4:9734715-9734734 | Msa0149170:intron | 15.0% |
| !! | ATTAAACCATATTTAATTGA+GGG | + | chr1_4:9735270-9735289 | Msa0149170:intron | 15.0% |
| !!! | GTGACATTTTTAAATTTTTA+AGG | + | chr1_4:9735647-9735666 | Msa0149170:intron | 15.0% |
| !!! | CATTTTTAAATTTTTAAGGT+TGG | + | chr1_4:9735651-9735670 | Msa0149170:intron | 15.0% |
| !! | TCAAATAAAAACTAGATAAA+AGG | + | chr1_4:9735691-9735710 | Msa0149170:intron | 15.0% |
| !!! | AGACTACATTTGTTTTATTT+TGG | + | chr1_4:9734074-9734093 | Msa0149170:CDS | 20.0% |
| !!! | TGATATAAGTCTTACTTTTT+GGG | - | chr1_4:9734182-9734201 | None:intergenic | 20.0% |
| !!! | ATGATATAAGTCTTACTTTT+TGG | - | chr1_4:9734183-9734202 | None:intergenic | 20.0% |
| !! | AAAAAGTAAGACTTATATCA+TGG | + | chr1_4:9734182-9734201 | Msa0149170:intron | 20.0% |
| !! | AAAAGTAAGACTTATATCAT+GGG | + | chr1_4:9734183-9734202 | Msa0149170:intron | 20.0% |
| !!! | GAAATGTGATTAATTTTGTA+TGG | + | chr1_4:9734268-9734287 | Msa0149170:intron | 20.0% |
| !! | AAGAAAATAGTAAATGGTTA+AGG | + | chr1_4:9734362-9734381 | Msa0149170:intron | 20.0% |
| !! | AGAAAATAGTAAATGGTTAA+GGG | + | chr1_4:9734363-9734382 | Msa0149170:intron | 20.0% |
| !! | CATTTATATAAACACTTACT+AGG | - | chr1_4:9734716-9734735 | None:intergenic | 20.0% |
| !! | CTAGTAAGTGTTTATATAAA+TGG | + | chr1_4:9734714-9734733 | Msa0149170:intron | 20.0% |
| !! | AGTAAGTGTTTATATAAATG+GGG | + | chr1_4:9734716-9734735 | Msa0149170:intron | 20.0% |
| !! | ATATGGTTTAATCAATCATT+CGG | - | chr1_4:9735262-9735281 | None:intergenic | 20.0% |
| !! | GATTAAACCATATTTAATTG+AGG | + | chr1_4:9735269-9735288 | Msa0149170:intron | 20.0% |
| !!! | AGACTACATTTGTTTTATTT+TGG | + | chr1_4:9734074-9734093 | Msa0149170:CDS | 20.0% |
| !!! | TGATATAAGTCTTACTTTTT+GGG | - | chr1_4:9734182-9734201 | None:intergenic | 20.0% |
| !!! | ATGATATAAGTCTTACTTTT+TGG | - | chr1_4:9734183-9734202 | None:intergenic | 20.0% |
| !! | AAAAAGTAAGACTTATATCA+TGG | + | chr1_4:9734182-9734201 | Msa0149170:intron | 20.0% |
| !! | AAAAGTAAGACTTATATCAT+GGG | + | chr1_4:9734183-9734202 | Msa0149170:intron | 20.0% |
| !!! | GAAATGTGATTAATTTTGTA+TGG | + | chr1_4:9734268-9734287 | Msa0149170:intron | 20.0% |
| !! | AAGAAAATAGTAAATGGTTA+AGG | + | chr1_4:9734362-9734381 | Msa0149170:intron | 20.0% |
| !! | AGAAAATAGTAAATGGTTAA+GGG | + | chr1_4:9734363-9734382 | Msa0149170:intron | 20.0% |
| !! | CATTTATATAAACACTTACT+AGG | - | chr1_4:9734716-9734735 | None:intergenic | 20.0% |
| !! | CTAGTAAGTGTTTATATAAA+TGG | + | chr1_4:9734714-9734733 | Msa0149170:intron | 20.0% |
| !! | AGTAAGTGTTTATATAAATG+GGG | + | chr1_4:9734716-9734735 | Msa0149170:intron | 20.0% |
| !! | ATATGGTTTAATCAATCATT+CGG | - | chr1_4:9735262-9735281 | None:intergenic | 20.0% |
| !! | GATTAAACCATATTTAATTG+AGG | + | chr1_4:9735269-9735288 | Msa0149170:intron | 20.0% |
| !!! | AACTACTATTTTGTTTTCCA+AGG | + | chr1_4:9733792-9733811 | Msa0149170:CDS | 25.0% |
| !! | CTATCTTTTGTAAGTACAAT+CGG | + | chr1_4:9733928-9733947 | Msa0149170:CDS | 25.0% |
| !! | AACAAACTTTGAGAAACTTA+TGG | - | chr1_4:9734543-9734562 | None:intergenic | 25.0% |
| ! | GTAAGTGTTTATATAAATGG+GGG | + | chr1_4:9734717-9734736 | Msa0149170:intron | 25.0% |
| ! | ATAACACCCTCAATTAAATA+TGG | - | chr1_4:9735279-9735298 | None:intergenic | 25.0% |
| !!! | TTTTTGTTGTTTCTCAAGTT+CGG | - | chr1_4:9735499-9735518 | None:intergenic | 25.0% |
| !!! | AACTACTATTTTGTTTTCCA+AGG | + | chr1_4:9733792-9733811 | Msa0149170:CDS | 25.0% |
| !! | CTATCTTTTGTAAGTACAAT+CGG | + | chr1_4:9733928-9733947 | Msa0149170:CDS | 25.0% |
| !! | AACAAACTTTGAGAAACTTA+TGG | - | chr1_4:9734543-9734562 | None:intergenic | 25.0% |
| ! | GTAAGTGTTTATATAAATGG+GGG | + | chr1_4:9734717-9734736 | Msa0149170:intron | 25.0% |
| ! | ATAACACCCTCAATTAAATA+TGG | - | chr1_4:9735279-9735298 | None:intergenic | 25.0% |
| !!! | TTTTTGTTGTTTCTCAAGTT+CGG | - | chr1_4:9735499-9735518 | None:intergenic | 25.0% |
| !! | GATTAACACTAGTACTGATT+TGG | - | chr1_4:9733644-9733663 | None:intergenic | 30.0% |
| ! | TCACGTTCATTTTCATTTTC+TGG | - | chr1_4:9733666-9733685 | None:intergenic | 30.0% |
| TTGAGTCAACTACAATCAAA+CGG | + | chr1_4:9733756-9733775 | Msa0149170:CDS | 30.0% | |
| !! | CAAAATAGTAGTTTGCTAGT+TGG | - | chr1_4:9733785-9733804 | None:intergenic | 30.0% |
| TTAAGCAAAAAGCTAGCAAT+TGG | + | chr1_4:9733955-9733974 | Msa0149170:CDS | 30.0% | |
| !!! | AGACTTAGATGCTTTTTCTT+TGG | + | chr1_4:9734470-9734489 | Msa0149170:intron | 30.0% |
| TTATGGATATGAGGAAATCA+CGG | - | chr1_4:9734526-9734545 | None:intergenic | 30.0% | |
| TTGAGAAACTTATGGATATG+AGG | - | chr1_4:9734535-9734554 | None:intergenic | 30.0% | |
| GATAAGAGAGAAAAAAACAC+AGG | - | chr1_4:9735146-9735165 | None:intergenic | 30.0% | |
| ! | CGTAAACACAAGTTGAAATA+GGG | - | chr1_4:9735168-9735187 | None:intergenic | 30.0% |
| ! | TCGTAAACACAAGTTGAAAT+AGG | - | chr1_4:9735169-9735188 | None:intergenic | 30.0% |
| TATTTCACGAACGTTACTTA+CGG | + | chr1_4:9735296-9735315 | Msa0149170:intron | 30.0% | |
| !! | TGAACTGAGTTGTTTTATCT+TGG | + | chr1_4:9735340-9735359 | Msa0149170:intron | 30.0% |
| ACATCTAAGAAAATGTACCT+AGG | + | chr1_4:9735519-9735538 | Msa0149170:intron | 30.0% | |
| !! | TGTTTTGAATGATGTTGTAG+TGG | + | chr1_4:9735565-9735584 | Msa0149170:intron | 30.0% |
| TCTGTGAATGAACTTTCTAT+AGG | + | chr1_4:9735715-9735734 | Msa0149170:intron | 30.0% | |
| ! | CATCAACTAATCCTTTTATG+CGG | - | chr1_4:9735757-9735776 | None:intergenic | 30.0% |
| !! | GATTAACACTAGTACTGATT+TGG | - | chr1_4:9733644-9733663 | None:intergenic | 30.0% |
| ! | TCACGTTCATTTTCATTTTC+TGG | - | chr1_4:9733666-9733685 | None:intergenic | 30.0% |
| TTGAGTCAACTACAATCAAA+CGG | + | chr1_4:9733756-9733775 | Msa0149170:CDS | 30.0% | |
| !! | CAAAATAGTAGTTTGCTAGT+TGG | - | chr1_4:9733785-9733804 | None:intergenic | 30.0% |
| TTAAGCAAAAAGCTAGCAAT+TGG | + | chr1_4:9733955-9733974 | Msa0149170:CDS | 30.0% | |
| !!! | AGACTTAGATGCTTTTTCTT+TGG | + | chr1_4:9734470-9734489 | Msa0149170:intron | 30.0% |
| TTATGGATATGAGGAAATCA+CGG | - | chr1_4:9734526-9734545 | None:intergenic | 30.0% | |
| TTGAGAAACTTATGGATATG+AGG | - | chr1_4:9734535-9734554 | None:intergenic | 30.0% | |
| GATAAGAGAGAAAAAAACAC+AGG | - | chr1_4:9735146-9735165 | None:intergenic | 30.0% | |
| ! | CGTAAACACAAGTTGAAATA+GGG | - | chr1_4:9735168-9735187 | None:intergenic | 30.0% |
| ! | TCGTAAACACAAGTTGAAAT+AGG | - | chr1_4:9735169-9735188 | None:intergenic | 30.0% |
| TATTTCACGAACGTTACTTA+CGG | + | chr1_4:9735296-9735315 | Msa0149170:intron | 30.0% | |
| !! | TGAACTGAGTTGTTTTATCT+TGG | + | chr1_4:9735340-9735359 | Msa0149170:intron | 30.0% |
| ACATCTAAGAAAATGTACCT+AGG | + | chr1_4:9735519-9735538 | Msa0149170:intron | 30.0% | |
| !! | TGTTTTGAATGATGTTGTAG+TGG | + | chr1_4:9735565-9735584 | Msa0149170:intron | 30.0% |
| TCTGTGAATGAACTTTCTAT+AGG | + | chr1_4:9735715-9735734 | Msa0149170:intron | 30.0% | |
| ! | CATCAACTAATCCTTTTATG+CGG | - | chr1_4:9735757-9735776 | None:intergenic | 30.0% |
| CTCTTAAATGCTCAGATAGA+TGG | + | chr1_4:9733850-9733869 | Msa0149170:CDS | 35.0% | |
| ACAAATGTAGTCTGATGTCA+AGG | - | chr1_4:9734067-9734086 | None:intergenic | 35.0% | |
| !! | ATTTGCTATCATTGTCTTCG+TGG | + | chr1_4:9734121-9734140 | Msa0149170:intron | 35.0% |
| ! | TTTGCTATCATTGTCTTCGT+GGG | + | chr1_4:9734122-9734141 | Msa0149170:intron | 35.0% |
| TGTCTCTGCATAAAAATCTC+AGG | - | chr1_4:9734151-9734170 | None:intergenic | 35.0% | |
| ! | ATTTTTATGCAGAGACACGT+AGG | + | chr1_4:9734154-9734173 | Msa0149170:intron | 35.0% |
| ! | TTTTTATGCAGAGACACGTA+GGG | + | chr1_4:9734155-9734174 | Msa0149170:intron | 35.0% |
| ! | AAGAACCACACTAAAAGTGT+TGG | + | chr1_4:9734590-9734609 | Msa0149170:intron | 35.0% |
| GTAGTATGACTCTTCAATGT+GGG | - | chr1_4:9734694-9734713 | None:intergenic | 35.0% | |
| ! | TTTTCGTGTGTGGATATATC+CGG | - | chr1_4:9734996-9735015 | None:intergenic | 35.0% |
| !!! | AACAAACGCGGTTTGTTTTA+AGG | + | chr1_4:9735014-9735033 | Msa0149170:intron | 35.0% |
| TTCGCTGTAAAGAATAAGTG+AGG | - | chr1_4:9735106-9735125 | None:intergenic | 35.0% | |
| TTCGGTTAAACCACTCTATA+TGG | - | chr1_4:9735244-9735263 | None:intergenic | 35.0% | |
| !! | ACTGAGTTGTTTTATCTTGG+AGG | + | chr1_4:9735343-9735362 | Msa0149170:intron | 35.0% |
| TAGTCTACCTTACACAAACT+CGG | + | chr1_4:9735378-9735397 | Msa0149170:CDS | 35.0% | |
| ACATCTTAAAGAAAGCGACA+TGG | + | chr1_4:9735414-9735433 | Msa0149170:CDS | 35.0% | |
| TTACCACAGAAGATATTACC+AGG | - | chr1_4:9735451-9735470 | None:intergenic | 35.0% | |
| AAGAAAATGTACCTAGGTCA+TGG | + | chr1_4:9735525-9735544 | Msa0149170:intron | 35.0% | |
| AGCATTTGTGACAACAAGAA+AGG | + | chr1_4:9735613-9735632 | Msa0149170:CDS | 35.0% | |
| GCATTTGTGACAACAAGAAA+GGG | + | chr1_4:9735614-9735633 | Msa0149170:CDS | 35.0% | |
| CATTTGTGACAACAAGAAAG+GGG | + | chr1_4:9735615-9735634 | Msa0149170:CDS | 35.0% | |
| ATTTGTGACAACAAGAAAGG+GGG | + | chr1_4:9735616-9735635 | Msa0149170:CDS | 35.0% | |
| AACGTTCTTAACCGCATAAA+AGG | + | chr1_4:9735743-9735762 | Msa0149170:CDS | 35.0% | |
| CTCTTAAATGCTCAGATAGA+TGG | + | chr1_4:9733850-9733869 | Msa0149170:CDS | 35.0% | |
| ACAAATGTAGTCTGATGTCA+AGG | - | chr1_4:9734067-9734086 | None:intergenic | 35.0% | |
| !! | ATTTGCTATCATTGTCTTCG+TGG | + | chr1_4:9734121-9734140 | Msa0149170:intron | 35.0% |
| ! | TTTGCTATCATTGTCTTCGT+GGG | + | chr1_4:9734122-9734141 | Msa0149170:intron | 35.0% |
| TGTCTCTGCATAAAAATCTC+AGG | - | chr1_4:9734151-9734170 | None:intergenic | 35.0% | |
| ! | ATTTTTATGCAGAGACACGT+AGG | + | chr1_4:9734154-9734173 | Msa0149170:intron | 35.0% |
| ! | TTTTTATGCAGAGACACGTA+GGG | + | chr1_4:9734155-9734174 | Msa0149170:intron | 35.0% |
| ! | AAGAACCACACTAAAAGTGT+TGG | + | chr1_4:9734590-9734609 | Msa0149170:intron | 35.0% |
| GTAGTATGACTCTTCAATGT+GGG | - | chr1_4:9734694-9734713 | None:intergenic | 35.0% | |
| ! | TTTTCGTGTGTGGATATATC+CGG | - | chr1_4:9734996-9735015 | None:intergenic | 35.0% |
| !!! | AACAAACGCGGTTTGTTTTA+AGG | + | chr1_4:9735014-9735033 | Msa0149170:intron | 35.0% |
| TTCGCTGTAAAGAATAAGTG+AGG | - | chr1_4:9735106-9735125 | None:intergenic | 35.0% | |
| TTCGGTTAAACCACTCTATA+TGG | - | chr1_4:9735244-9735263 | None:intergenic | 35.0% | |
| !! | ACTGAGTTGTTTTATCTTGG+AGG | + | chr1_4:9735343-9735362 | Msa0149170:intron | 35.0% |
| TAGTCTACCTTACACAAACT+CGG | + | chr1_4:9735378-9735397 | Msa0149170:CDS | 35.0% | |
| ACATCTTAAAGAAAGCGACA+TGG | + | chr1_4:9735414-9735433 | Msa0149170:CDS | 35.0% | |
| TTACCACAGAAGATATTACC+AGG | - | chr1_4:9735451-9735470 | None:intergenic | 35.0% | |
| AAGAAAATGTACCTAGGTCA+TGG | + | chr1_4:9735525-9735544 | Msa0149170:intron | 35.0% | |
| AGCATTTGTGACAACAAGAA+AGG | + | chr1_4:9735613-9735632 | Msa0149170:CDS | 35.0% | |
| GCATTTGTGACAACAAGAAA+GGG | + | chr1_4:9735614-9735633 | Msa0149170:CDS | 35.0% | |
| CATTTGTGACAACAAGAAAG+GGG | + | chr1_4:9735615-9735634 | Msa0149170:CDS | 35.0% | |
| ATTTGTGACAACAAGAAAGG+GGG | + | chr1_4:9735616-9735635 | Msa0149170:CDS | 35.0% | |
| AACGTTCTTAACCGCATAAA+AGG | + | chr1_4:9735743-9735762 | Msa0149170:CDS | 35.0% | |
| AAAAGAACAAACGCAGCAAC+AGG | + | chr1_4:9733998-9734017 | Msa0149170:CDS | 40.0% | |
| GACTCATCAAGACATGATGT+GGG | + | chr1_4:9734020-9734039 | Msa0149170:CDS | 40.0% | |
| ACTCATCAAGACATGATGTG+GGG | + | chr1_4:9734021-9734040 | Msa0149170:CDS | 40.0% | |
| ! | TTTTATGCAGAGACACGTAG+GGG | + | chr1_4:9734156-9734175 | Msa0149170:intron | 40.0% |
| AAACGGCTGATAAGACTTTG+AGG | + | chr1_4:9734425-9734444 | Msa0149170:intron | 40.0% | |
| TGAGGTGAAGAACTTTAGTG+AGG | + | chr1_4:9734443-9734462 | Msa0149170:intron | 40.0% | |
| GAGGTGAAGAACTTTAGTGA+GGG | + | chr1_4:9734444-9734463 | Msa0149170:intron | 40.0% | |
| ! | GTGTTCCAACACTTTTAGTG+TGG | - | chr1_4:9734598-9734617 | None:intergenic | 40.0% |
| TGGAACACTAGCAACAATAG+CGG | + | chr1_4:9734610-9734629 | Msa0149170:intron | 40.0% | |
| ! | TAGCAACAATAGCGGAAAGT+TGG | + | chr1_4:9734618-9734637 | Msa0149170:intron | 40.0% |
| ACCTTAGTAAGAGCTAGTGT+TGG | + | chr1_4:9734652-9734671 | Msa0149170:intron | 40.0% | |
| ! | ACCAACACTAGCTCTTACTA+AGG | - | chr1_4:9734656-9734675 | None:intergenic | 40.0% |
| GGTAGTATGACTCTTCAATG+TGG | - | chr1_4:9734695-9734714 | None:intergenic | 40.0% | |
| ! | TTTTTACCCAAGTCCAAGCT+CGG | - | chr1_4:9734840-9734859 | None:intergenic | 40.0% |
| ! | TACTCTCTGTTGGATTGGAT+CGG | - | chr1_4:9734962-9734981 | None:intergenic | 40.0% |
| AACAAAAACGGGGTGACTTA+AGG | - | chr1_4:9735056-9735075 | None:intergenic | 40.0% | |
| GAGAGTTCGTAACAAAAACG+GGG | - | chr1_4:9735066-9735085 | None:intergenic | 40.0% | |
| GGAGAGTTCGTAACAAAAAC+GGG | - | chr1_4:9735067-9735086 | None:intergenic | 40.0% | |
| GGGAGAGTTCGTAACAAAAA+CGG | - | chr1_4:9735068-9735087 | None:intergenic | 40.0% | |
| TGTTACGAACTCTCCCTATA+AGG | + | chr1_4:9735072-9735091 | Msa0149170:intron | 40.0% | |
| ACACTATCCGAGTTTGTGTA+AGG | - | chr1_4:9735388-9735407 | None:intergenic | 40.0% | |
| CAACCTGGTAATATCTTCTG+TGG | + | chr1_4:9735445-9735464 | Msa0149170:intron | 40.0% | |
| ! | ACCTAGGTCATGGAAGATTT+TGG | + | chr1_4:9735535-9735554 | Msa0149170:intron | 40.0% |
| ACCAAAATCTTCCATGACCT+AGG | - | chr1_4:9735539-9735558 | None:intergenic | 40.0% | |
| AAAAGAACAAACGCAGCAAC+AGG | + | chr1_4:9733998-9734017 | Msa0149170:CDS | 40.0% | |
| GACTCATCAAGACATGATGT+GGG | + | chr1_4:9734020-9734039 | Msa0149170:CDS | 40.0% | |
| ACTCATCAAGACATGATGTG+GGG | + | chr1_4:9734021-9734040 | Msa0149170:CDS | 40.0% | |
| ! | TTTTATGCAGAGACACGTAG+GGG | + | chr1_4:9734156-9734175 | Msa0149170:intron | 40.0% |
| AAACGGCTGATAAGACTTTG+AGG | + | chr1_4:9734425-9734444 | Msa0149170:intron | 40.0% | |
| TGAGGTGAAGAACTTTAGTG+AGG | + | chr1_4:9734443-9734462 | Msa0149170:intron | 40.0% | |
| GAGGTGAAGAACTTTAGTGA+GGG | + | chr1_4:9734444-9734463 | Msa0149170:intron | 40.0% | |
| ! | GTGTTCCAACACTTTTAGTG+TGG | - | chr1_4:9734598-9734617 | None:intergenic | 40.0% |
| TGGAACACTAGCAACAATAG+CGG | + | chr1_4:9734610-9734629 | Msa0149170:intron | 40.0% | |
| ! | TAGCAACAATAGCGGAAAGT+TGG | + | chr1_4:9734618-9734637 | Msa0149170:intron | 40.0% |
| ACCTTAGTAAGAGCTAGTGT+TGG | + | chr1_4:9734652-9734671 | Msa0149170:intron | 40.0% | |
| ! | ACCAACACTAGCTCTTACTA+AGG | - | chr1_4:9734656-9734675 | None:intergenic | 40.0% |
| GGTAGTATGACTCTTCAATG+TGG | - | chr1_4:9734695-9734714 | None:intergenic | 40.0% | |
| ! | TTTTTACCCAAGTCCAAGCT+CGG | - | chr1_4:9734840-9734859 | None:intergenic | 40.0% |
| ! | TACTCTCTGTTGGATTGGAT+CGG | - | chr1_4:9734962-9734981 | None:intergenic | 40.0% |
| AACAAAAACGGGGTGACTTA+AGG | - | chr1_4:9735056-9735075 | None:intergenic | 40.0% | |
| GAGAGTTCGTAACAAAAACG+GGG | - | chr1_4:9735066-9735085 | None:intergenic | 40.0% | |
| GGAGAGTTCGTAACAAAAAC+GGG | - | chr1_4:9735067-9735086 | None:intergenic | 40.0% | |
| GGGAGAGTTCGTAACAAAAA+CGG | - | chr1_4:9735068-9735087 | None:intergenic | 40.0% | |
| TGTTACGAACTCTCCCTATA+AGG | + | chr1_4:9735072-9735091 | Msa0149170:intron | 40.0% | |
| ACACTATCCGAGTTTGTGTA+AGG | - | chr1_4:9735388-9735407 | None:intergenic | 40.0% | |
| CAACCTGGTAATATCTTCTG+TGG | + | chr1_4:9735445-9735464 | Msa0149170:intron | 40.0% | |
| ! | ACCTAGGTCATGGAAGATTT+TGG | + | chr1_4:9735535-9735554 | Msa0149170:intron | 40.0% |
| ACCAAAATCTTCCATGACCT+AGG | - | chr1_4:9735539-9735558 | None:intergenic | 40.0% | |
| !! | CACTGTTGCAGAGTGTTGTT+AGG | - | chr1_4:9733824-9733843 | None:intergenic | 45.0% |
| GGACTCATCAAGACATGATG+TGG | + | chr1_4:9734019-9734038 | Msa0149170:CDS | 45.0% | |
| CTCATCAAGACATGATGTGG+GGG | + | chr1_4:9734022-9734041 | Msa0149170:CDS | 45.0% | |
| !! | CCAATCCAACAGAGAGTATC+CGG | + | chr1_4:9734964-9734983 | Msa0149170:intron | 45.0% |
| !! | CAATCCAACAGAGAGTATCC+GGG | + | chr1_4:9734965-9734984 | Msa0149170:intron | 45.0% |
| TCCACACACGAAAACAAACG+CGG | + | chr1_4:9735002-9735021 | Msa0149170:intron | 45.0% | |
| ! | TCTACTCCTTTTTGTCCCGT+CGG | + | chr1_4:9735200-9735219 | Msa0149170:intron | 45.0% |
| GGTCTACGTACCATATAGAG+TGG | + | chr1_4:9735231-9735250 | Msa0149170:intron | 45.0% | |
| ! | GTTTTATCTTGGAGGTGACG+CGG | + | chr1_4:9735351-9735370 | Msa0149170:intron | 45.0% |
| ! | TTTTATCTTGGAGGTGACGC+GGG | + | chr1_4:9735352-9735371 | Msa0149170:intron | 45.0% |
| !! | CACTGTTGCAGAGTGTTGTT+AGG | - | chr1_4:9733824-9733843 | None:intergenic | 45.0% |
| GGACTCATCAAGACATGATG+TGG | + | chr1_4:9734019-9734038 | Msa0149170:CDS | 45.0% | |
| CTCATCAAGACATGATGTGG+GGG | + | chr1_4:9734022-9734041 | Msa0149170:CDS | 45.0% | |
| !! | CCAATCCAACAGAGAGTATC+CGG | + | chr1_4:9734964-9734983 | Msa0149170:intron | 45.0% |
| !! | CAATCCAACAGAGAGTATCC+GGG | + | chr1_4:9734965-9734984 | Msa0149170:intron | 45.0% |
| TCCACACACGAAAACAAACG+CGG | + | chr1_4:9735002-9735021 | Msa0149170:intron | 45.0% | |
| ! | TCTACTCCTTTTTGTCCCGT+CGG | + | chr1_4:9735200-9735219 | Msa0149170:intron | 45.0% |
| GGTCTACGTACCATATAGAG+TGG | + | chr1_4:9735231-9735250 | Msa0149170:intron | 45.0% | |
| ! | GTTTTATCTTGGAGGTGACG+CGG | + | chr1_4:9735351-9735370 | Msa0149170:intron | 45.0% |
| ! | TTTTATCTTGGAGGTGACGC+GGG | + | chr1_4:9735352-9735371 | Msa0149170:intron | 45.0% |
| ! | GTGTTGTTAGGATGACGCCT+TGG | - | chr1_4:9733812-9733831 | None:intergenic | 50.0% |
| TAAATGGGGGCTGACCTACA+AGG | + | chr1_4:9734730-9734749 | Msa0149170:intron | 50.0% | |
| AAATGGGGGCTGACCTACAA+GGG | + | chr1_4:9734731-9734750 | Msa0149170:intron | 50.0% | |
| GCTCATCCGTTCGCAAAAGT+GGG | - | chr1_4:9734772-9734791 | None:intergenic | 50.0% | |
| CCGGATACTCTCTGTTGGAT+TGG | - | chr1_4:9734967-9734986 | None:intergenic | 50.0% | |
| TGGATATATCCGGAACCTCC+CGG | - | chr1_4:9734986-9735005 | None:intergenic | 50.0% | |
| !! | ACCGCGTTTGTTTTCGTGTG+TGG | - | chr1_4:9735006-9735025 | None:intergenic | 50.0% |
| CGAACTCTCCCTATAAGGAG+AGG | + | chr1_4:9735077-9735096 | Msa0149170:intron | 50.0% | |
| TGAGGCGACCTCTCCTTATA+GGG | - | chr1_4:9735088-9735107 | None:intergenic | 50.0% | |
| ACGAAACCGACGGGACAAAA+AGG | - | chr1_4:9735209-9735228 | None:intergenic | 50.0% | |
| GGTGCAGTACGTAATCGAAC+AGG | + | chr1_4:9735317-9735336 | Msa0149170:intron | 50.0% | |
| ! | GTGTTGTTAGGATGACGCCT+TGG | - | chr1_4:9733812-9733831 | None:intergenic | 50.0% |
| TAAATGGGGGCTGACCTACA+AGG | + | chr1_4:9734730-9734749 | Msa0149170:intron | 50.0% | |
| AAATGGGGGCTGACCTACAA+GGG | + | chr1_4:9734731-9734750 | Msa0149170:intron | 50.0% | |
| GCTCATCCGTTCGCAAAAGT+GGG | - | chr1_4:9734772-9734791 | None:intergenic | 50.0% | |
| CCGGATACTCTCTGTTGGAT+TGG | - | chr1_4:9734967-9734986 | None:intergenic | 50.0% | |
| TGGATATATCCGGAACCTCC+CGG | - | chr1_4:9734986-9735005 | None:intergenic | 50.0% | |
| !! | ACCGCGTTTGTTTTCGTGTG+TGG | - | chr1_4:9735006-9735025 | None:intergenic | 50.0% |
| CGAACTCTCCCTATAAGGAG+AGG | + | chr1_4:9735077-9735096 | Msa0149170:intron | 50.0% | |
| TGAGGCGACCTCTCCTTATA+GGG | - | chr1_4:9735088-9735107 | None:intergenic | 50.0% | |
| ACGAAACCGACGGGACAAAA+AGG | - | chr1_4:9735209-9735228 | None:intergenic | 50.0% | |
| GGTGCAGTACGTAATCGAAC+AGG | + | chr1_4:9735317-9735336 | Msa0149170:intron | 50.0% | |
| ! | ACCTACAAGGGTGTGCCCTT+GGG | + | chr1_4:9734743-9734762 | Msa0149170:intron | 55.0% |
| CGCTCATCCGTTCGCAAAAG+TGG | - | chr1_4:9734773-9734792 | None:intergenic | 55.0% | |
| TACCCAAGTCCAAGCTCGGA+CGG | - | chr1_4:9734836-9734855 | None:intergenic | 55.0% | |
| !! | TCCAACAGAGAGTATCCGGG+AGG | + | chr1_4:9734968-9734987 | Msa0149170:intron | 55.0% |
| ACCTCCCGGATACTCTCTGT+TGG | - | chr1_4:9734972-9734991 | None:intergenic | 55.0% | |
| !! | AGAGAGTATCCGGGAGGTTC+CGG | + | chr1_4:9734974-9734993 | Msa0149170:intron | 55.0% |
| GTGAGGCGACCTCTCCTTAT+AGG | - | chr1_4:9735089-9735108 | None:intergenic | 55.0% | |
| !! | TTTGTCCCGTCGGTTTCGTG+TGG | + | chr1_4:9735210-9735229 | Msa0149170:intron | 55.0% |
| GTAGACCACACGAAACCGAC+GGG | - | chr1_4:9735218-9735237 | None:intergenic | 55.0% | |
| CGTAGACCACACGAAACCGA+CGG | - | chr1_4:9735219-9735238 | None:intergenic | 55.0% | |
| GACATGGTCGTGACTCAACC+TGG | + | chr1_4:9735430-9735449 | Msa0149170:CDS | 55.0% | |
| ! | ACCTACAAGGGTGTGCCCTT+GGG | + | chr1_4:9734743-9734762 | Msa0149170:intron | 55.0% |
| CGCTCATCCGTTCGCAAAAG+TGG | - | chr1_4:9734773-9734792 | None:intergenic | 55.0% | |
| TACCCAAGTCCAAGCTCGGA+CGG | - | chr1_4:9734836-9734855 | None:intergenic | 55.0% | |
| !! | TCCAACAGAGAGTATCCGGG+AGG | + | chr1_4:9734968-9734987 | Msa0149170:intron | 55.0% |
| ACCTCCCGGATACTCTCTGT+TGG | - | chr1_4:9734972-9734991 | None:intergenic | 55.0% | |
| !! | AGAGAGTATCCGGGAGGTTC+CGG | + | chr1_4:9734974-9734993 | Msa0149170:intron | 55.0% |
| GTGAGGCGACCTCTCCTTAT+AGG | - | chr1_4:9735089-9735108 | None:intergenic | 55.0% | |
| !! | TTTGTCCCGTCGGTTTCGTG+TGG | + | chr1_4:9735210-9735229 | Msa0149170:intron | 55.0% |
| GTAGACCACACGAAACCGAC+GGG | - | chr1_4:9735218-9735237 | None:intergenic | 55.0% | |
| CGTAGACCACACGAAACCGA+CGG | - | chr1_4:9735219-9735238 | None:intergenic | 55.0% | |
| GACATGGTCGTGACTCAACC+TGG | + | chr1_4:9735430-9735449 | Msa0149170:CDS | 55.0% | |
| ! | GACCTACAAGGGTGTGCCCT+TGG | + | chr1_4:9734742-9734761 | Msa0149170:intron | 60.0% |
| ! | CCTACAAGGGTGTGCCCTTG+GGG | + | chr1_4:9734744-9734763 | Msa0149170:intron | 60.0% |
| CGCAAAAGTGGGCACCCCAA+GGG | - | chr1_4:9734761-9734780 | None:intergenic | 60.0% | |
| TCGCAAAAGTGGGCACCCCA+AGG | - | chr1_4:9734762-9734781 | None:intergenic | 60.0% | |
| !! | GGGGTGCCCACTTTTGCGAA+CGG | + | chr1_4:9734763-9734782 | Msa0149170:intron | 60.0% |
| CAAGTCCAAGCTCGGACGGA+CGG | - | chr1_4:9734832-9734851 | None:intergenic | 60.0% | |
| GTCCGTCCGAGCTTGGACTT+GGG | + | chr1_4:9734831-9734850 | Msa0149170:intron | 60.0% | |
| ! | GACCTACAAGGGTGTGCCCT+TGG | + | chr1_4:9734742-9734761 | Msa0149170:intron | 60.0% |
| ! | CCTACAAGGGTGTGCCCTTG+GGG | + | chr1_4:9734744-9734763 | Msa0149170:intron | 60.0% |
| CGCAAAAGTGGGCACCCCAA+GGG | - | chr1_4:9734761-9734780 | None:intergenic | 60.0% | |
| TCGCAAAAGTGGGCACCCCA+AGG | - | chr1_4:9734762-9734781 | None:intergenic | 60.0% | |
| !! | GGGGTGCCCACTTTTGCGAA+CGG | + | chr1_4:9734763-9734782 | Msa0149170:intron | 60.0% |
| CAAGTCCAAGCTCGGACGGA+CGG | - | chr1_4:9734832-9734851 | None:intergenic | 60.0% | |
| GTCCGTCCGAGCTTGGACTT+GGG | + | chr1_4:9734831-9734850 | Msa0149170:intron | 60.0% | |
| ! | CCCCAAGGGCACACCCTTGT+AGG | - | chr1_4:9734747-9734766 | None:intergenic | 65.0% |
| CGTCCGTCCGAGCTTGGACT+TGG | + | chr1_4:9734830-9734849 | Msa0149170:intron | 65.0% | |
| ! | CCCCAAGGGCACACCCTTGT+AGG | - | chr1_4:9734747-9734766 | None:intergenic | 65.0% |
| CGTCCGTCCGAGCTTGGACT+TGG | + | chr1_4:9734830-9734849 | Msa0149170:intron | 65.0% | |
| GTCCAAGCTCGGACGGACGG+CGG | - | chr1_4:9734829-9734848 | None:intergenic | 70.0% | |
| GTCCAAGCTCGGACGGACGG+CGG | - | chr1_4:9734829-9734848 | None:intergenic | 70.0% | |
| ! | CGCCGCCGTCCGTCCGAGCT+TGG | + | chr1_4:9734824-9734843 | Msa0149170:intron | 80.0% |
| ! | CGCCGCCGTCCGTCCGAGCT+TGG | + | chr1_4:9734824-9734843 | Msa0149170:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 9733630 | 9735796 | 9733630 | ID=Msa0149170;Name=Msa0149170 |
| chr1_4 | mRNA | 9733630 | 9735796 | 9733630 | ID=Msa0149170-mRNA-1;Parent=Msa0149170;Name=Msa0149170-mRNA-1;_AED=0.33;_eAED=0.91;_QI=0|0|0|1|1|1|4|0|221 |
| chr1_4 | exon | 9733630 | 9734095 | 9733630 | ID=Msa0149170-mRNA-1:exon:4090;Parent=Msa0149170-mRNA-1 |
| chr1_4 | exon | 9735365 | 9735451 | 9735365 | ID=Msa0149170-mRNA-1:exon:4091;Parent=Msa0149170-mRNA-1 |
| chr1_4 | exon | 9735585 | 9735637 | 9735585 | ID=Msa0149170-mRNA-1:exon:4092;Parent=Msa0149170-mRNA-1 |
| chr1_4 | exon | 9735737 | 9735796 | 9735737 | ID=Msa0149170-mRNA-1:exon:4093;Parent=Msa0149170-mRNA-1 |
| chr1_4 | CDS | 9733630 | 9734095 | 9733630 | ID=Msa0149170-mRNA-1:cds;Parent=Msa0149170-mRNA-1 |
| chr1_4 | CDS | 9735365 | 9735451 | 9735365 | ID=Msa0149170-mRNA-1:cds;Parent=Msa0149170-mRNA-1 |
| chr1_4 | CDS | 9735585 | 9735637 | 9735585 | ID=Msa0149170-mRNA-1:cds;Parent=Msa0149170-mRNA-1 |
| chr1_4 | CDS | 9735737 | 9735796 | 9735737 | ID=Msa0149170-mRNA-1:cds;Parent=Msa0149170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
