Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898370 | RHN52769.1 | 85.768 | 267 | 35 | 1 | 1 | 264 | 1 | 267 | 7.90e-157 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898370 | sp|Q8VYG0|LRL13_ARATH | 31.760 | 233 | 129 | 10 | 3 | 225 | 12 | 224 | 9.29e-20 | 92.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898370 | A0A396HHG2 | 85.768 | 267 | 35 | 1 | 1 | 264 | 1 | 267 | 3.78e-157 | 447 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007010 | Msa0898370 | 0.812422 | 4.274354e-51 | -8.615850e-47 |
| Msa0011720 | Msa0898370 | 0.810971 | 8.839786e-51 | -8.615850e-47 |
| Msa0022640 | Msa0898370 | 0.808944 | 2.414180e-50 | -8.615850e-47 |
| Msa0032500 | Msa0898370 | 0.808037 | 3.770670e-50 | -8.615850e-47 |
| Msa0033340 | Msa0898370 | 0.810778 | 9.731891e-51 | -8.615850e-47 |
| Msa0044710 | Msa0898370 | 0.806253 | 8.999390e-50 | -8.615850e-47 |
| Msa0055730 | Msa0898370 | 0.806984 | 6.308896e-50 | -8.615850e-47 |
| Msa0091770 | Msa0898370 | 0.804369 | 2.232544e-49 | -8.615850e-47 |
| Msa0610370 | Msa0898370 | 0.818012 | 2.447085e-52 | -8.615850e-47 |
| Msa0617370 | Msa0898370 | 0.805045 | 1.613465e-49 | -8.615850e-47 |
| Msa0621590 | Msa0898370 | 0.800178 | 1.628076e-48 | -8.615850e-47 |
| Msa0638280 | Msa0898370 | 0.805443 | 1.331879e-49 | -8.615850e-47 |
| Msa0638320 | Msa0898370 | 0.801425 | 9.059878e-49 | -8.615850e-47 |
| Msa0649970 | Msa0898370 | 0.809950 | 1.468763e-50 | -8.615850e-47 |
| Msa0650900 | Msa0898370 | 0.815061 | 1.121191e-51 | -8.615850e-47 |
| Msa0677820 | Msa0898370 | 0.809710 | 1.653708e-50 | -8.615850e-47 |
| Msa0714600 | Msa0898370 | 0.800335 | 1.512274e-48 | -8.615850e-47 |
| Msa0734660 | Msa0898370 | 0.816966 | 4.209995e-52 | -8.615850e-47 |
| Msa0750380 | Msa0898370 | 0.815949 | 7.113873e-52 | -8.615850e-47 |
| Msa0773610 | Msa0898370 | 0.809895 | 1.509225e-50 | -8.615850e-47 |
| Msa0776220 | Msa0898370 | 0.815778 | 7.765818e-52 | -8.615850e-47 |
| Msa0818010 | Msa0898370 | 0.805288 | 1.435374e-49 | -8.615850e-47 |
| Msa0839330 | Msa0898370 | 0.800901 | 1.159357e-48 | -8.615850e-47 |
| Msa0134220 | Msa0898370 | 0.812306 | 4.530221e-51 | -8.615850e-47 |
| Msa0149170 | Msa0898370 | 0.819164 | 1.340801e-52 | -8.615850e-47 |
| Msa0153430 | Msa0898370 | 0.820717 | 5.917991e-53 | -8.615850e-47 |
| Msa0161680 | Msa0898370 | 0.803529 | 3.337668e-49 | -8.615850e-47 |
| Msa0170010 | Msa0898370 | 0.800393 | 1.471939e-48 | -8.615850e-47 |
| Msa0173090 | Msa0898370 | 0.809190 | 2.139032e-50 | -8.615850e-47 |
| Msa0193760 | Msa0898370 | 0.802646 | 5.083765e-49 | -8.615850e-47 |
| Msa0208630 | Msa0898370 | 0.807875 | 4.082149e-50 | -8.615850e-47 |
| Msa0235190 | Msa0898370 | 0.807180 | 5.734170e-50 | -8.615850e-47 |
| Msa0235550 | Msa0898370 | 0.801457 | 8.923205e-49 | -8.615850e-47 |
| Msa0431520 | Msa0898370 | 0.804844 | 1.777224e-49 | -8.615850e-47 |
| Msa0431830 | Msa0898370 | 0.811159 | 8.049373e-51 | -8.615850e-47 |
| Msa0436460 | Msa0898370 | 0.802437 | 5.613497e-49 | -8.615850e-47 |
| Msa0452310 | Msa0898370 | 0.809155 | 2.175565e-50 | -8.615850e-47 |
| Msa0452410 | Msa0898370 | 0.850365 | 1.780480e-60 | -8.615850e-47 |
| Msa0458700 | Msa0898370 | 0.833651 | 4.718526e-56 | -8.615850e-47 |
| Msa0465930 | Msa0898370 | 0.802193 | 6.299741e-49 | -8.615850e-47 |
| Msa0466060 | Msa0898370 | 0.800090 | 1.696733e-48 | -8.615850e-47 |
| Msa0273570 | Msa0898370 | 0.832128 | 1.127851e-55 | -8.615850e-47 |
| Msa0274520 | Msa0898370 | 0.814390 | 1.578768e-51 | -8.615850e-47 |
| Msa0280490 | Msa0898370 | 0.816918 | 4.316980e-52 | -8.615850e-47 |
| Msa0313920 | Msa0898370 | 0.810089 | 1.370994e-50 | -8.615850e-47 |
| Msa0344830 | Msa0898370 | 0.824856 | 6.432401e-54 | -8.615850e-47 |
| Msa0347360 | Msa0898370 | 0.801609 | 8.307270e-49 | -8.615850e-47 |
| Msa0350670 | Msa0898370 | 0.811729 | 6.051966e-51 | -8.615850e-47 |
| Msa0490350 | Msa0898370 | 0.812712 | 3.692276e-51 | -8.615850e-47 |
| Msa0495830 | Msa0898370 | 0.801535 | 8.600398e-49 | -8.615850e-47 |
| Msa0508200 | Msa0898370 | 0.810078 | 1.377992e-50 | -8.615850e-47 |
| Msa0517330 | Msa0898370 | 0.802645 | 5.084088e-49 | -8.615850e-47 |
| Msa0517340 | Msa0898370 | 0.806527 | 7.877942e-50 | -8.615850e-47 |
| Msa0524890 | Msa0898370 | -0.803397 | 3.555178e-49 | -8.615850e-47 |
| Msa0533430 | Msa0898370 | 0.804598 | 2.000784e-49 | -8.615850e-47 |
| Msa0535060 | Msa0898370 | 0.800149 | 1.650262e-48 | -8.615850e-47 |
| Msa0555950 | Msa0898370 | 0.824480 | 7.887863e-54 | -8.615850e-47 |
| Msa0580610 | Msa0898370 | 0.811970 | 5.362278e-51 | -8.615850e-47 |
| Msa0594430 | Msa0898370 | 0.841894 | 3.602388e-58 | -8.615850e-47 |
| Msa0844900 | Msa0898370 | 0.802191 | 6.307054e-49 | -8.615850e-47 |
| Msa0847200 | Msa0898370 | 0.810373 | 1.190458e-50 | -8.615850e-47 |
| Msa0870620 | Msa0898370 | 0.826411 | 2.752878e-54 | -8.615850e-47 |
| Msa0870690 | Msa0898370 | 0.813149 | 2.962901e-51 | -8.615850e-47 |
| Msa0880710 | Msa0898370 | 0.801294 | 9.637419e-49 | -8.615850e-47 |
| Msa0898350 | Msa0898370 | 0.827990 | 1.152627e-54 | -8.615850e-47 |
| Msa0898370 | Msa0903730 | 0.815217 | 1.035258e-51 | -8.615850e-47 |
| Msa0898370 | Msa0937940 | 0.807141 | 5.841914e-50 | -8.615850e-47 |
| Msa0898370 | Msa0950620 | 0.811880 | 5.611747e-51 | -8.615850e-47 |
| Msa0898370 | Msa0951720 | 0.810995 | 8.732645e-51 | -8.615850e-47 |
| Msa0898370 | Msa0961420 | -0.800249 | 1.574675e-48 | -8.615850e-47 |
| Msa0898370 | Msa1002300 | 0.983113 | 7.300158e-157 | -8.615850e-47 |
| Msa0898370 | Msa1006250 | 0.802856 | 4.599979e-49 | -8.615850e-47 |
| Msa0898370 | Msa1020720 | 0.823407 | 1.408746e-53 | -8.615850e-47 |
| Msa0898370 | Msa1027240 | 0.821981 | 3.024290e-53 | -8.615850e-47 |
| Msa0898370 | Msa1027290 | 0.820072 | 8.321521e-53 | -8.615850e-47 |
| Msa0898370 | Msa1046610 | 0.804914 | 1.718449e-49 | -8.615850e-47 |
| Msa0898370 | Msa1050480 | 0.809662 | 1.693513e-50 | -8.615850e-47 |
| Msa0898370 | Msa1072350 | 0.816672 | 4.901918e-52 | -8.615850e-47 |
| Msa0898370 | Msa1095480 | 0.803628 | 3.183190e-49 | -8.615850e-47 |
| Msa0898370 | Msa1100260 | 0.800283 | 1.550174e-48 | -8.615850e-47 |
| Msa0898370 | Msa1139410 | 0.811717 | 6.087756e-51 | -8.615850e-47 |
| Msa0898370 | Msa1142500 | 0.803567 | 3.278489e-49 | -8.615850e-47 |
| Msa0898370 | Msa1184730 | 0.804165 | 2.462274e-49 | -8.615850e-47 |
| Msa0898370 | Msa1198090 | 0.838125 | 3.463025e-57 | -8.615850e-47 |
| Msa0898370 | Msa1206020 | 0.811632 | 6.354758e-51 | -8.615850e-47 |
| Msa0898370 | Msa1218480 | 0.805223 | 1.480864e-49 | -8.615850e-47 |
| Msa0898370 | Msa1233500 | 0.826862 | 2.148738e-54 | -8.615850e-47 |
| Msa0898370 | Msa1252070 | 0.818179 | 2.243494e-52 | -8.615850e-47 |
| Msa0898370 | Msa1275770 | 0.839261 | 1.761663e-57 | -8.615850e-47 |
| Msa0898370 | Msa1280130 | 0.821777 | 3.371783e-53 | -8.615850e-47 |
| Msa0898370 | Msa1287560 | 0.833519 | 5.091387e-56 | -8.615850e-47 |
| Msa0898370 | Msa1287700 | 0.812662 | 3.786512e-51 | -8.615850e-47 |
| Msa0898370 | Msa1288000 | 0.807789 | 4.256733e-50 | -8.615850e-47 |
| Msa0898370 | Msa1289280 | 0.804350 | 2.253027e-49 | -8.615850e-47 |
| Msa0898370 | Msa1347620 | 0.809829 | 1.559117e-50 | -8.615850e-47 |
| Msa0898370 | Msa1369530 | 0.814638 | 1.391353e-51 | -8.615850e-47 |
| Msa0898370 | Msa1379990 | 0.802748 | 4.841213e-49 | -8.615850e-47 |
| Msa0898370 | Msa1396830 | 0.800686 | 1.282622e-48 | -8.615850e-47 |
| Msa0898370 | Msa1419010 | 0.816244 | 6.111389e-52 | -8.615850e-47 |
| Msa0898370 | Msa1440340 | 0.800531 | 1.379899e-48 | -8.615850e-47 |
| Msa0898370 | Msa1444370 | 0.807806 | 4.221613e-50 | -8.615850e-47 |
| Msa0898370 | Msa1453710 | 0.802580 | 5.245482e-49 | -8.615850e-47 |
| Msa0898370 | Msa1464560 | 0.802930 | 4.440068e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898370 | MtrunA17_Chr6g0484061 | 85.768 | 267 | 35 | 1 | 1 | 264 | 1 | 267 | 7.27e-161 | 447 |
| Msa0898370 | MtrunA17_Chr6g0467631 | 57.471 | 261 | 83 | 7 | 5 | 246 | 11 | 262 | 2.58e-87 | 273 |
| Msa0898370 | MtrunA17_Chr6g0484051 | 52.529 | 257 | 95 | 7 | 23 | 256 | 23 | 275 | 3.04e-75 | 241 |
| Msa0898370 | MtrunA17_Chr6g0483931 | 51.321 | 265 | 104 | 8 | 4 | 246 | 10 | 271 | 3.19e-74 | 239 |
| Msa0898370 | MtrunA17_Chr6g0483821 | 51.471 | 272 | 104 | 8 | 1 | 249 | 7 | 273 | 3.85e-72 | 233 |
| Msa0898370 | MtrunA17_Chr6g0483901 | 49.333 | 225 | 91 | 6 | 4 | 212 | 10 | 227 | 3.05e-60 | 191 |
| Msa0898370 | MtrunA17_Chr8g0376061 | 35.102 | 245 | 129 | 10 | 32 | 258 | 24 | 256 | 4.28e-28 | 112 |
| Msa0898370 | MtrunA17_Chr8g0391231 | 32.721 | 272 | 147 | 10 | 8 | 256 | 1 | 259 | 2.53e-27 | 110 |
| Msa0898370 | MtrunA17_Chr6g0484081 | 55.056 | 89 | 33 | 3 | 27 | 110 | 26 | 112 | 3.54e-22 | 88.6 |
| Msa0898370 | MtrunA17_Chr6g0467591 | 56.338 | 71 | 26 | 1 | 5 | 75 | 30 | 95 | 7.46e-21 | 84.7 |
| Msa0898370 | MtrunA17_Chr7g0251131 | 25.620 | 242 | 163 | 8 | 10 | 242 | 6 | 239 | 1.95e-18 | 82.4 |
| Msa0898370 | MtrunA17_Chr7g0251011 | 25.820 | 244 | 164 | 8 | 8 | 242 | 7 | 242 | 3.34e-18 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898370 | AT5G38210.1 | 31.760 | 233 | 129 | 10 | 3 | 225 | 12 | 224 | 9.44e-21 | 92.0 |
| Msa0898370 | AT1G67000.1 | 32.444 | 225 | 124 | 11 | 44 | 256 | 38 | 246 | 8.20e-19 | 86.3 |
| Msa0898370 | AT1G66940.2 | 32.796 | 186 | 116 | 7 | 44 | 224 | 37 | 218 | 2.84e-18 | 83.2 |
| Msa0898370 | AT1G66940.3 | 32.796 | 186 | 116 | 7 | 44 | 224 | 37 | 218 | 2.84e-18 | 83.2 |
| Msa0898370 | AT1G66940.1 | 32.796 | 186 | 116 | 7 | 44 | 224 | 37 | 218 | 3.13e-18 | 83.2 |
| Msa0898370 | AT1G66940.4 | 32.796 | 186 | 116 | 7 | 44 | 224 | 37 | 218 | 4.85e-18 | 82.8 |
| Msa0898370 | AT1G66880.1 | 32.663 | 199 | 99 | 9 | 43 | 224 | 23 | 203 | 1.67e-17 | 82.4 |
| Msa0898370 | AT1G66880.1 | 28.704 | 216 | 121 | 9 | 22 | 224 | 400 | 595 | 1.04e-13 | 71.2 |
| Msa0898370 | AT1G66930.2 | 31.980 | 197 | 103 | 10 | 44 | 225 | 37 | 217 | 3.36e-15 | 75.5 |
| Msa0898370 | AT1G66930.2 | 26.766 | 269 | 142 | 13 | 15 | 250 | 231 | 477 | 8.67e-12 | 65.5 |
| Msa0898370 | AT5G38250.1 | 30.052 | 193 | 113 | 7 | 44 | 223 | 41 | 224 | 1.89e-14 | 73.2 |
| Msa0898370 | AT1G66920.3 | 31.373 | 204 | 102 | 12 | 41 | 225 | 34 | 218 | 6.07e-14 | 71.6 |
| Msa0898370 | AT1G66920.1 | 31.373 | 204 | 102 | 12 | 41 | 225 | 34 | 218 | 6.09e-14 | 71.6 |
| Msa0898370 | AT1G66920.2 | 31.373 | 204 | 102 | 12 | 41 | 225 | 34 | 218 | 6.12e-14 | 71.6 |
| Msa0898370 | AT1G66880.3 | 29.442 | 197 | 112 | 8 | 41 | 224 | 34 | 216 | 2.86e-13 | 69.7 |
| Msa0898370 | AT1G66880.2 | 29.442 | 197 | 112 | 8 | 41 | 224 | 34 | 216 | 3.13e-13 | 69.7 |
| Msa0898370 | AT5G38240.1 | 33.523 | 176 | 105 | 7 | 44 | 212 | 41 | 211 | 1.17e-12 | 67.8 |
| Msa0898370 | AT5G38240.2 | 33.523 | 176 | 105 | 7 | 44 | 212 | 41 | 211 | 1.35e-12 | 67.8 |
| Msa0898370 | AT1G67025.1 | 25.352 | 213 | 133 | 8 | 49 | 241 | 14 | 220 | 7.42e-11 | 60.8 |
Find 47 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTGTTCGAGTGATTATT+TGG | 0.242766 | 6_1:-91935069 | Msa0898370:CDS |
| CCAACATCGAATATCCATTC+TGG | 0.249841 | 6_1:-91935586 | Msa0898370:CDS |
| CTGTGGCAGTTAAGGTAAAA+TGG | 0.256708 | 6_1:+91935527 | Msa0898360:CDS |
| TGAGGGATGTTTAAATTGTT+TGG | 0.284486 | 6_1:-91935102 | Msa0898370:CDS |
| TGAGGATCTTGAAAATGATT+TGG | 0.287118 | 6_1:-91935156 | Msa0898370:CDS |
| AAAGAGATATATGTAATGTT+TGG | 0.298188 | 6_1:+91935728 | None:intergenic |
| GAGGGATGTTTAAATTGTTT+GGG | 0.317526 | 6_1:-91935101 | Msa0898370:CDS |
| GTCTGTTCTCTTGAGTTTGA+TGG | 0.330549 | 6_1:+91935433 | Msa0898360:intron |
| TACTGTTGCTGTGGCAGTTA+AGG | 0.347160 | 6_1:+91935519 | Msa0898360:CDS |
| AAGAGATATATGTAATGTTT+GGG | 0.405412 | 6_1:+91935729 | None:intergenic |
| TTAAATTGTTTGGGAAATGA+AGG | 0.425334 | 6_1:-91935092 | Msa0898370:CDS |
| TTGCCCGCGCCGCAGTTAAA+CGG | 0.436874 | 6_1:+91935551 | Msa0898360:CDS |
| TGATTTGGACAAGGGATTTG+AGG | 0.442955 | 6_1:-91935141 | Msa0898370:CDS |
| CATCTTGAATAATCGTGAAC+TGG | 0.446986 | 6_1:+91935647 | None:intergenic |
| GGAAATATTTCCGCAGTTGT+AGG | 0.451508 | 6_1:+91935607 | Msa0898360:CDS |
| CGTCCGTTTAACTGCGGCGC+GGG | 0.453234 | 6_1:-91935554 | Msa0898370:CDS |
| AATCGTGAACTGGTTGAGAC+TGG | 0.453887 | 6_1:+91935657 | None:intergenic |
| CAACATCGAATATCCATTCT+GGG | 0.459645 | 6_1:-91935585 | Msa0898370:CDS |
| CGGCACATTGGAATAAGAAA+AGG | 0.491831 | 6_1:+91935247 | Msa0898360:intron |
| CTTGAAAATGATTTGGACAA+GGG | 0.508385 | 6_1:-91935149 | Msa0898370:CDS |
| TTTGGACAAGGGATTTGAGG+TGG | 0.548996 | 6_1:-91935138 | Msa0898370:CDS |
| TATTTCCGCAGTTGTAGGAA+TGG | 0.549324 | 6_1:+91935612 | Msa0898360:CDS |
| TTATTATCAATAGACCCGTC+TGG | 0.550836 | 6_1:+91935011 | Msa0898360:intron |
| TGTGGCAGTTAAGGTAAAAT+GGG | 0.557819 | 6_1:+91935528 | Msa0898360:CDS |
| ATGTCTATGATGTGGACACT+TGG | 0.571414 | 6_1:+91935341 | Msa0898360:intron |
| ATCGTGAACTGGTTGAGACT+GGG | 0.573683 | 6_1:+91935658 | None:intergenic |
| TATTATGATAATTGTCCAGA+CGG | 0.576682 | 6_1:-91935026 | Msa0898370:CDS |
| AAGAAAGTATCATTGTATTG+AGG | 0.582725 | 6_1:+91935389 | Msa0898360:intron |
| CCAGAATGGATATTCGATGT+TGG | 0.584250 | 6_1:+91935586 | Msa0898360:CDS |
| GAAAACATACTATTGTGAAG+AGG | 0.589810 | 6_1:+91934981 | Msa0898360:intron |
| GGTTGAGACTGGGATTGTGT+TGG | 0.602896 | 6_1:+91935668 | None:intergenic |
| ATTATGATAATTGTCCAGAC+GGG | 0.606325 | 6_1:-91935025 | Msa0898370:CDS |
| GGTGGAATACAGTGTGAATG+AGG | 0.607769 | 6_1:-91935120 | Msa0898370:CDS |
| TCTTGAAAATGATTTGGACA+AGG | 0.608964 | 6_1:-91935150 | Msa0898370:CDS |
| GTCGACCATTCCTACAACTG+CGG | 0.613126 | 6_1:-91935617 | Msa0898370:CDS |
| TTACTTAATAAATCTCTGTG+TGG | 0.616919 | 6_1:-91935284 | Msa0898370:CDS |
| AAACATATTGAAGTGCGCGT+AGG | 0.643061 | 6_1:-91935191 | Msa0898370:CDS |
| TGTCTATGATGTGGACACTT+GGG | 0.647464 | 6_1:+91935342 | Msa0898360:intron |
| GTGGAATACAGTGTGAATGA+GGG | 0.649851 | 6_1:-91935119 | Msa0898370:CDS |
| TGTAGTATATGTCTATGATG+TGG | 0.655187 | 6_1:+91935333 | Msa0898360:intron |
| TGGTAGTAATACTGTTGCTG+TGG | 0.674755 | 6_1:+91935510 | Msa0898360:CDS |
| CAAAATCGTCCGTTTAACTG+CGG | 0.685993 | 6_1:-91935560 | Msa0898370:CDS |
| CGTAGGAGAAGATAATTCTG+AGG | 0.690250 | 6_1:-91935174 | Msa0898370:CDS |
| AACATCGAATATCCATTCTG+GGG | 0.702136 | 6_1:-91935584 | Msa0898370:CDS |
| ACATTGGAATAAGAAAAGGA+AGG | 0.711357 | 6_1:+91935251 | Msa0898360:intron |
| CTATGATGTGGACACTTGGG+AGG | 0.726349 | 6_1:+91935345 | Msa0898360:intron |
| TCGTCCGTTTAACTGCGGCG+CGG | 0.733230 | 6_1:-91935555 | Msa0898370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAGATATATGTAATGTTT+GGG | + | chr6_1:91934970-91934989 | Msa0898360:intron | 20.0% |
| !! | AAAGAGATATATGTAATGTT+TGG | + | chr6_1:91934971-91934990 | Msa0898360:intron | 20.0% |
| !!! | ATTTTGTGATGATAATAGAA+TGG | + | chr6_1:91935209-91935228 | Msa0898360:intron | 20.0% |
| !! | AAGAGATATATGTAATGTTT+GGG | + | chr6_1:91934970-91934989 | Msa0898360:intron | 20.0% |
| !! | AAAGAGATATATGTAATGTT+TGG | + | chr6_1:91934971-91934990 | Msa0898360:intron | 20.0% |
| !!! | ATTTTGTGATGATAATAGAA+TGG | + | chr6_1:91935209-91935228 | Msa0898360:intron | 20.0% |
| !! | TTGAGGAGAACAAAAATTTT+GGG | + | chr6_1:91935293-91935312 | Msa0898360:intron | 25.0% |
| !! | ATTGAGGAGAACAAAAATTT+TGG | + | chr6_1:91935294-91935313 | Msa0898360:intron | 25.0% |
| !!! | AAGAAAGTATCATTGTATTG+AGG | + | chr6_1:91935310-91935329 | Msa0898360:intron | 25.0% |
| ! | TTACTTAATAAATCTCTGTG+TGG | - | chr6_1:91935412-91935431 | Msa0898370:CDS | 25.0% |
| ! | TTAAATTGTTTGGGAAATGA+AGG | - | chr6_1:91935604-91935623 | Msa0898370:CDS | 25.0% |
| ! | ATATTGTTCGAGTGATTATT+TGG | - | chr6_1:91935627-91935646 | Msa0898370:CDS | 25.0% |
| ! | TATTATGATAATTGTCCAGA+CGG | - | chr6_1:91935670-91935689 | Msa0898370:CDS | 25.0% |
| !! | TTGAGGAGAACAAAAATTTT+GGG | + | chr6_1:91935293-91935312 | Msa0898360:intron | 25.0% |
| !! | ATTGAGGAGAACAAAAATTT+TGG | + | chr6_1:91935294-91935313 | Msa0898360:intron | 25.0% |
| !!! | AAGAAAGTATCATTGTATTG+AGG | + | chr6_1:91935310-91935329 | Msa0898360:intron | 25.0% |
| ! | TTACTTAATAAATCTCTGTG+TGG | - | chr6_1:91935412-91935431 | Msa0898370:CDS | 25.0% |
| ! | TTAAATTGTTTGGGAAATGA+AGG | - | chr6_1:91935604-91935623 | Msa0898370:CDS | 25.0% |
| ! | ATATTGTTCGAGTGATTATT+TGG | - | chr6_1:91935627-91935646 | Msa0898370:CDS | 25.0% |
| ! | TATTATGATAATTGTCCAGA+CGG | - | chr6_1:91935670-91935689 | Msa0898370:CDS | 25.0% |
| !! | GAGAACAAAAATTTTGGGAA+AGG | + | chr6_1:91935288-91935307 | Msa0898360:intron | 30.0% |
| TGTAGTATATGTCTATGATG+TGG | + | chr6_1:91935366-91935385 | Msa0898360:intron | 30.0% | |
| ACATTGGAATAAGAAAAGGA+AGG | + | chr6_1:91935448-91935467 | Msa0898360:intron | 30.0% | |
| ! | TGATCTAGATTTTCGTCATA+CGG | + | chr6_1:91935472-91935491 | Msa0898360:intron | 30.0% |
| TGAGGATCTTGAAAATGATT+TGG | - | chr6_1:91935540-91935559 | Msa0898370:CDS | 30.0% | |
| ! | TCTTGAAAATGATTTGGACA+AGG | - | chr6_1:91935546-91935565 | Msa0898370:CDS | 30.0% |
| ! | CTTGAAAATGATTTGGACAA+GGG | - | chr6_1:91935547-91935566 | Msa0898370:CDS | 30.0% |
| TGAGGGATGTTTAAATTGTT+TGG | - | chr6_1:91935594-91935613 | Msa0898370:CDS | 30.0% | |
| GAGGGATGTTTAAATTGTTT+GGG | - | chr6_1:91935595-91935614 | Msa0898370:CDS | 30.0% | |
| ATTATGATAATTGTCCAGAC+GGG | - | chr6_1:91935671-91935690 | Msa0898370:CDS | 30.0% | |
| GAAAACATACTATTGTGAAG+AGG | + | chr6_1:91935718-91935737 | None:intergenic | 30.0% | |
| !! | GAGAACAAAAATTTTGGGAA+AGG | + | chr6_1:91935288-91935307 | Msa0898360:intron | 30.0% |
| TGTAGTATATGTCTATGATG+TGG | + | chr6_1:91935366-91935385 | Msa0898360:intron | 30.0% | |
| ACATTGGAATAAGAAAAGGA+AGG | + | chr6_1:91935448-91935467 | Msa0898360:intron | 30.0% | |
| ! | TGATCTAGATTTTCGTCATA+CGG | + | chr6_1:91935472-91935491 | Msa0898360:intron | 30.0% |
| TGAGGATCTTGAAAATGATT+TGG | - | chr6_1:91935540-91935559 | Msa0898370:CDS | 30.0% | |
| ! | TCTTGAAAATGATTTGGACA+AGG | - | chr6_1:91935546-91935565 | Msa0898370:CDS | 30.0% |
| ! | CTTGAAAATGATTTGGACAA+GGG | - | chr6_1:91935547-91935566 | Msa0898370:CDS | 30.0% |
| TGAGGGATGTTTAAATTGTT+TGG | - | chr6_1:91935594-91935613 | Msa0898370:CDS | 30.0% | |
| GAGGGATGTTTAAATTGTTT+GGG | - | chr6_1:91935595-91935614 | Msa0898370:CDS | 30.0% | |
| ATTATGATAATTGTCCAGAC+GGG | - | chr6_1:91935671-91935690 | Msa0898370:CDS | 30.0% | |
| GAAAACATACTATTGTGAAG+AGG | + | chr6_1:91935718-91935737 | None:intergenic | 30.0% | |
| CATCTTGAATAATCGTGAAC+TGG | + | chr6_1:91935052-91935071 | Msa0898360:intron | 35.0% | |
| CAACATCGAATATCCATTCT+GGG | - | chr6_1:91935111-91935130 | Msa0898370:CDS | 35.0% | |
| AACATCGAATATCCATTCTG+GGG | - | chr6_1:91935112-91935131 | Msa0898370:CDS | 35.0% | |
| TGTGGCAGTTAAGGTAAAAT+GGG | + | chr6_1:91935171-91935190 | Msa0898360:intron | 35.0% | |
| !!! | GGGAGGTACTGAAATATTTT+TGG | + | chr6_1:91935337-91935356 | Msa0898360:intron | 35.0% |
| TTATTATCAATAGACCCGTC+TGG | + | chr6_1:91935688-91935707 | None:intergenic | 35.0% | |
| CATCTTGAATAATCGTGAAC+TGG | + | chr6_1:91935052-91935071 | Msa0898360:intron | 35.0% | |
| CAACATCGAATATCCATTCT+GGG | - | chr6_1:91935111-91935130 | Msa0898370:CDS | 35.0% | |
| AACATCGAATATCCATTCTG+GGG | - | chr6_1:91935112-91935131 | Msa0898370:CDS | 35.0% | |
| TGTGGCAGTTAAGGTAAAAT+GGG | + | chr6_1:91935171-91935190 | Msa0898360:intron | 35.0% | |
| !!! | GGGAGGTACTGAAATATTTT+TGG | + | chr6_1:91935337-91935356 | Msa0898360:intron | 35.0% |
| TTATTATCAATAGACCCGTC+TGG | + | chr6_1:91935688-91935707 | None:intergenic | 35.0% | |
| TATTTCCGCAGTTGTAGGAA+TGG | + | chr6_1:91935087-91935106 | Msa0898360:intron | 40.0% | |
| GGAAATATTTCCGCAGTTGT+AGG | + | chr6_1:91935092-91935111 | Msa0898360:intron | 40.0% | |
| CCAGAATGGATATTCGATGT+TGG | + | chr6_1:91935113-91935132 | Msa0898360:intron | 40.0% | |
| CCAACATCGAATATCCATTC+TGG | - | chr6_1:91935110-91935129 | Msa0898370:CDS | 40.0% | |
| CAAAATCGTCCGTTTAACTG+CGG | - | chr6_1:91935136-91935155 | Msa0898370:CDS | 40.0% | |
| CTGTGGCAGTTAAGGTAAAA+TGG | + | chr6_1:91935172-91935191 | Msa0898360:intron | 40.0% | |
| TGGTAGTAATACTGTTGCTG+TGG | + | chr6_1:91935189-91935208 | Msa0898360:intron | 40.0% | |
| GTCTGTTCTCTTGAGTTTGA+TGG | + | chr6_1:91935266-91935285 | Msa0898360:intron | 40.0% | |
| TGTCTATGATGTGGACACTT+GGG | + | chr6_1:91935357-91935376 | Msa0898360:intron | 40.0% | |
| ATGTCTATGATGTGGACACT+TGG | + | chr6_1:91935358-91935377 | Msa0898360:intron | 40.0% | |
| CGGCACATTGGAATAAGAAA+AGG | + | chr6_1:91935452-91935471 | Msa0898360:intron | 40.0% | |
| ! | ATTTTCGTCATACGGCACAT+TGG | + | chr6_1:91935464-91935483 | Msa0898360:intron | 40.0% |
| AAACATATTGAAGTGCGCGT+AGG | - | chr6_1:91935505-91935524 | Msa0898370:CDS | 40.0% | |
| CGTAGGAGAAGATAATTCTG+AGG | - | chr6_1:91935522-91935541 | Msa0898370:CDS | 40.0% | |
| ! | TGATTTGGACAAGGGATTTG+AGG | - | chr6_1:91935555-91935574 | Msa0898370:CDS | 40.0% |
| GTGGAATACAGTGTGAATGA+GGG | - | chr6_1:91935577-91935596 | Msa0898370:CDS | 40.0% | |
| TATTTCCGCAGTTGTAGGAA+TGG | + | chr6_1:91935087-91935106 | Msa0898360:intron | 40.0% | |
| GGAAATATTTCCGCAGTTGT+AGG | + | chr6_1:91935092-91935111 | Msa0898360:intron | 40.0% | |
| CCAGAATGGATATTCGATGT+TGG | + | chr6_1:91935113-91935132 | Msa0898360:intron | 40.0% | |
| CCAACATCGAATATCCATTC+TGG | - | chr6_1:91935110-91935129 | Msa0898370:CDS | 40.0% | |
| CAAAATCGTCCGTTTAACTG+CGG | - | chr6_1:91935136-91935155 | Msa0898370:CDS | 40.0% | |
| CTGTGGCAGTTAAGGTAAAA+TGG | + | chr6_1:91935172-91935191 | Msa0898360:intron | 40.0% | |
| TGGTAGTAATACTGTTGCTG+TGG | + | chr6_1:91935189-91935208 | Msa0898360:intron | 40.0% | |
| GTCTGTTCTCTTGAGTTTGA+TGG | + | chr6_1:91935266-91935285 | Msa0898360:intron | 40.0% | |
| TGTCTATGATGTGGACACTT+GGG | + | chr6_1:91935357-91935376 | Msa0898360:intron | 40.0% | |
| ATGTCTATGATGTGGACACT+TGG | + | chr6_1:91935358-91935377 | Msa0898360:intron | 40.0% | |
| CGGCACATTGGAATAAGAAA+AGG | + | chr6_1:91935452-91935471 | Msa0898360:intron | 40.0% | |
| ! | ATTTTCGTCATACGGCACAT+TGG | + | chr6_1:91935464-91935483 | Msa0898360:intron | 40.0% |
| AAACATATTGAAGTGCGCGT+AGG | - | chr6_1:91935505-91935524 | Msa0898370:CDS | 40.0% | |
| CGTAGGAGAAGATAATTCTG+AGG | - | chr6_1:91935522-91935541 | Msa0898370:CDS | 40.0% | |
| ! | TGATTTGGACAAGGGATTTG+AGG | - | chr6_1:91935555-91935574 | Msa0898370:CDS | 40.0% |
| GTGGAATACAGTGTGAATGA+GGG | - | chr6_1:91935577-91935596 | Msa0898370:CDS | 40.0% | |
| ATCGTGAACTGGTTGAGACT+GGG | + | chr6_1:91935041-91935060 | Msa0898360:intron | 45.0% | |
| AATCGTGAACTGGTTGAGAC+TGG | + | chr6_1:91935042-91935061 | Msa0898360:intron | 45.0% | |
| TACTGTTGCTGTGGCAGTTA+AGG | + | chr6_1:91935180-91935199 | Msa0898360:intron | 45.0% | |
| TTTGGACAAGGGATTTGAGG+TGG | - | chr6_1:91935558-91935577 | Msa0898370:CDS | 45.0% | |
| GGTGGAATACAGTGTGAATG+AGG | - | chr6_1:91935576-91935595 | Msa0898370:CDS | 45.0% | |
| ATCGTGAACTGGTTGAGACT+GGG | + | chr6_1:91935041-91935060 | Msa0898360:intron | 45.0% | |
| AATCGTGAACTGGTTGAGAC+TGG | + | chr6_1:91935042-91935061 | Msa0898360:intron | 45.0% | |
| TACTGTTGCTGTGGCAGTTA+AGG | + | chr6_1:91935180-91935199 | Msa0898360:intron | 45.0% | |
| TTTGGACAAGGGATTTGAGG+TGG | - | chr6_1:91935558-91935577 | Msa0898370:CDS | 45.0% | |
| GGTGGAATACAGTGTGAATG+AGG | - | chr6_1:91935576-91935595 | Msa0898370:CDS | 45.0% | |
| GGTTGAGACTGGGATTGTGT+TGG | + | chr6_1:91935031-91935050 | Msa0898360:intron | 50.0% | |
| GTCGACCATTCCTACAACTG+CGG | - | chr6_1:91935079-91935098 | Msa0898370:CDS | 50.0% | |
| ! | GGACGATTTTGTCCCCAGAA+TGG | + | chr6_1:91935127-91935146 | Msa0898360:intron | 50.0% |
| CTATGATGTGGACACTTGGG+AGG | + | chr6_1:91935354-91935373 | Msa0898360:intron | 50.0% | |
| GGTTGAGACTGGGATTGTGT+TGG | + | chr6_1:91935031-91935050 | Msa0898360:intron | 50.0% | |
| GTCGACCATTCCTACAACTG+CGG | - | chr6_1:91935079-91935098 | Msa0898370:CDS | 50.0% | |
| ! | GGACGATTTTGTCCCCAGAA+TGG | + | chr6_1:91935127-91935146 | Msa0898360:intron | 50.0% |
| CTATGATGTGGACACTTGGG+AGG | + | chr6_1:91935354-91935373 | Msa0898360:intron | 50.0% | |
| TCGTCCGTTTAACTGCGGCG+CGG | - | chr6_1:91935141-91935160 | Msa0898370:CDS | 60.0% | |
| TTGCCCGCGCCGCAGTTAAA+CGG | + | chr6_1:91935148-91935167 | Msa0898360:intron | 60.0% | |
| TCGTCCGTTTAACTGCGGCG+CGG | - | chr6_1:91935141-91935160 | Msa0898370:CDS | 60.0% | |
| TTGCCCGCGCCGCAGTTAAA+CGG | + | chr6_1:91935148-91935167 | Msa0898360:intron | 60.0% | |
| CGTCCGTTTAACTGCGGCGC+GGG | - | chr6_1:91935142-91935161 | Msa0898370:CDS | 65.0% | |
| CGTCCGTTTAACTGCGGCGC+GGG | - | chr6_1:91935142-91935161 | Msa0898370:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 91934962 | 91935756 | 91934962 | ID=Msa0898370;Name=Msa0898370 |
| chr6_1 | mRNA | 91934962 | 91935756 | 91934962 | ID=Msa0898370-mRNA-1;Parent=Msa0898370;Name=Msa0898370-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|-1|0|1|-1|1|1|0|264 |
| chr6_1 | exon | 91934962 | 91935756 | 91934962 | ID=Msa0898370-mRNA-1:exon:15591;Parent=Msa0898370-mRNA-1 |
| chr6_1 | CDS | 91934962 | 91935756 | 91934962 | ID=Msa0898370-mRNA-1:cds;Parent=Msa0898370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
