AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0016320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0016320 MtrunA17_Chr1g0196781 93.774 257 16 0 145 401 60 316 2.14e-180 504
Msa0016320 MtrunA17_Chr1g0196781 83.871 62 7 1 1 59 8 69 4.68e-24 101
Msa0016320 MtrunA17_Chr3g0115631 48.077 156 61 5 235 381 148 292 1.24e-35 133
Msa0016320 MtrunA17_Chr8g0382491 56.034 116 42 3 222 333 94 204 5.98e-34 127
Msa0016320 MtrunA17_Chr5g0425561 57.895 95 38 1 235 327 171 265 3.41e-31 122
Msa0016320 MtrunA17_Chr2g0324131 78.689 61 13 0 235 295 216 276 1.68e-28 115
Msa0016320 MtrunA17_Chr7g0221471 52.632 95 38 2 236 330 50 137 4.05e-26 103
Msa0016320 MtrunA17_Chr7g0221501 52.632 95 38 2 236 330 50 137 2.44e-24 98.6
Msa0016320 MtrunA17_Chr4g0055761 66.176 68 22 1 227 293 135 202 2.46e-23 98.6
Msa0016320 MtrunA17_Chr3g0126321 47.573 103 50 2 234 332 110 212 1.58e-22 97.8
Msa0016320 MtrunA17_Chr5g0396741 40.476 210 81 6 232 398 112 320 1.73e-22 97.1
Msa0016320 MtrunA17_Chr8g0346741 61.194 67 26 0 231 297 33 99 5.30e-22 92.4
Msa0016320 MtrunA17_Chr1g0150661 47.778 90 39 1 235 316 33 122 7.39e-22 93.2
Msa0016320 MtrunA17_Chr7g0275841 48.810 84 41 1 211 294 4 85 2.06e-21 90.5
Msa0016320 MtrunA17_Chr4g0044871 65.152 66 19 1 237 298 96 161 2.29e-21 92.0
Msa0016320 MtrunA17_Chr4g0063751 66.102 59 20 0 235 293 5 63 2.48e-21 91.7
Msa0016320 MtrunA17_Chr4g0003421 62.903 62 23 0 232 293 35 96 2.99e-21 92.0
Msa0016320 MtrunA17_Chr2g0333011 66.102 59 20 0 235 293 5 63 3.03e-21 90.1
Msa0016320 MtrunA17_Chr1g0150691 39.316 117 63 1 220 328 5 121 3.24e-21 91.3
Msa0016320 MtrunA17_Chr1g0150631 43.137 102 57 1 220 320 21 122 3.31e-21 91.7
Msa0016320 MtrunA17_Chr1g0150671 45.918 98 48 2 202 299 16 108 3.37e-21 92.8
Msa0016320 MtrunA17_Chr7g0257911 56.250 80 26 2 226 296 11 90 3.41e-21 92.8
Msa0016320 MtrunA17_Chr4g0002631 64.407 59 21 0 235 293 6 64 3.90e-21 90.5
Msa0016320 MtrunA17_Chr4g0023411 60.656 61 24 0 236 296 64 124 4.51e-21 90.5
Msa0016320 MtrunA17_Chr5g0437371 76.364 55 13 0 237 291 66 120 7.67e-21 92.8
Msa0016320 MtrunA17_Chr3g0137174 55.422 83 36 1 235 317 6 87 7.77e-21 89.4
Msa0016320 MtrunA17_Chr8g0383591 67.797 59 19 0 235 293 143 201 8.22e-21 92.0
Msa0016320 MtrunA17_Chr2g0295421 58.571 70 27 1 231 298 88 157 9.36e-21 90.9
Msa0016320 MtrunA17_Chr4g0044911 70.175 57 17 0 237 293 96 152 1.21e-20 90.1
Msa0016320 MtrunA17_Chr8g0375031 62.903 62 23 0 231 292 119 180 1.81e-20 89.4
Msa0016320 MtrunA17_Chr4g0044901 62.687 67 21 1 237 299 96 162 2.12e-20 89.4
Msa0016320 MtrunA17_Chr8g0335311 62.903 62 22 1 235 295 94 155 2.14e-20 88.6
Msa0016320 MtrunA17_Chr8g0335331 46.392 97 51 1 200 295 88 184 2.72e-20 88.2
Msa0016320 MtrunA17_Chr3g0134161 40.541 111 53 2 235 332 43 153 2.95e-20 87.4
Msa0016320 MtrunA17_Chr4g0017851 63.158 57 21 0 237 293 118 174 4.73e-20 90.1
Msa0016320 MtrunA17_Chr1g0158971 41.322 121 54 3 235 344 113 227 5.26e-20 90.5
Msa0016320 MtrunA17_Chr2g0283171 63.333 60 21 1 235 293 61 120 5.42e-20 86.3
Msa0016320 MtrunA17_Chr5g0401871 51.282 78 30 1 235 312 23 92 7.87e-20 86.7
Msa0016320 MtrunA17_Chr4g0046161 46.154 91 42 2 205 294 31 115 8.02e-20 84.7
Msa0016320 MtrunA17_Chr4g0044881 68.421 57 18 0 237 293 114 170 8.31e-20 87.8
Msa0016320 MtrunA17_Chr7g0265851 60.317 63 23 1 234 294 19 81 1.09e-19 86.7
Msa0016320 MtrunA17_Chr5g0399441 55.224 67 28 1 231 295 20 86 1.10e-19 85.9
Msa0016320 MtrunA17_Chr4g0055781 53.086 81 32 2 235 314 100 175 1.11e-19 87.8
Msa0016320 MtrunA17_Chr7g0250721 43.609 133 55 7 170 295 1 120 1.18e-19 86.7
Msa0016320 MtrunA17_Chr7g0232261 57.812 64 27 0 232 295 56 119 1.27e-19 87.4
Msa0016320 MtrunA17_Chr1g0195151 63.793 58 21 0 237 294 77 134 1.59e-19 88.6
Msa0016320 MtrunA17_Chr2g0282651 58.730 63 26 0 231 293 64 126 1.63e-19 87.4
Msa0016320 MtrunA17_Chr1g0196871 56.338 71 28 2 224 293 5 73 1.72e-19 83.2
Msa0016320 MtrunA17_Chr2g0301191 56.897 58 25 0 237 294 19 76 1.97e-19 86.3
Msa0016320 MtrunA17_Chr1g0153151 59.016 61 25 0 235 295 42 102 2.50e-19 85.1
Msa0016320 MtrunA17_Chr2g0334031 60.656 61 24 0 233 293 113 173 2.52e-19 88.6
Msa0016320 MtrunA17_Chr2g0331231 53.968 63 29 0 237 299 41 103 2.73e-19 85.5
Msa0016320 MtrunA17_Chr4g0026881 57.971 69 27 2 226 293 87 154 2.95e-19 86.3
Msa0016320 MtrunA17_Chr2g0282621 60.656 61 24 0 233 293 11 71 3.30e-19 84.3
Msa0016320 MtrunA17_Chr8g0340311 55.556 63 28 0 237 299 47 109 3.52e-19 85.1
Msa0016320 MtrunA17_Chr8g0344961 60.656 61 24 0 233 293 120 180 4.25e-19 88.2
Msa0016320 MtrunA17_Chr2g0323171 60.000 60 24 0 236 295 64 123 4.45e-19 84.7
Msa0016320 MtrunA17_Chr7g0250731 61.290 62 23 1 235 295 59 120 4.52e-19 85.1
Msa0016320 MtrunA17_Chr3g0136551 60.345 58 23 0 235 292 63 120 4.82e-19 86.3
Msa0016320 MtrunA17_Chr5g0437671 61.017 59 23 0 237 295 85 143 5.65e-19 88.2
Msa0016320 MtrunA17_Chr6g0486701 61.017 59 23 0 237 295 44 102 5.96e-19 85.1
Msa0016320 MtrunA17_Chr3g0140161 33.333 165 82 5 237 396 43 184 7.57e-19 84.0
Msa0016320 MtrunA17_Chr1g0189941 63.158 57 21 0 236 292 23 79 7.97e-19 83.2
Msa0016320 MtrunA17_Chr4g0055951 55.556 63 28 0 237 299 74 136 8.77e-19 85.5
Msa0016320 MtrunA17_Chr5g0396911 64.407 59 21 0 234 292 109 167 9.31e-19 86.3
Msa0016320 MtrunA17_Chr2g0316931 54.412 68 31 0 236 303 30 97 1.02e-18 84.0
Msa0016320 MtrunA17_Chr2g0301171 55.172 58 26 0 237 294 19 76 1.23e-18 83.6
Msa0016320 MtrunA17_Chr7g0250711 41.085 129 63 5 169 295 2 119 1.33e-18 83.6
Msa0016320 MtrunA17_Chr4g0055801 60.938 64 24 1 231 293 148 211 1.37e-18 85.9
Msa0016320 MtrunA17_Chr8g0335321 58.065 62 25 1 235 295 94 155 1.76e-18 83.6
Msa0016320 MtrunA17_Chr1g0170531 63.333 60 21 1 235 293 87 146 1.87e-18 84.0
Msa0016320 MtrunA17_Chr1g0186731 64.407 59 20 1 237 294 21 79 1.99e-18 81.3
Msa0016320 MtrunA17_Chr8g0390091 59.322 59 24 0 237 295 37 95 3.15e-18 83.2
Msa0016320 MtrunA17_Chr8g0387801 51.899 79 34 2 223 299 95 171 3.21e-18 84.7
Msa0016320 MtrunA17_Chr4g0062551 56.667 60 26 0 235 294 51 110 3.50e-18 80.5
Msa0016320 MtrunA17_Chr2g0283181 41.880 117 62 4 235 349 147 259 5.54e-18 83.6
Msa0016320 MtrunA17_Chr5g0438801 49.351 77 37 1 225 299 37 113 6.21e-18 83.6
Msa0016320 MtrunA17_Chr3g0099871 43.396 106 45 3 236 326 26 131 9.38e-18 81.6
Msa0016320 MtrunA17_Chr4g0062161 56.667 60 26 0 235 294 51 110 1.28e-17 80.9
Msa0016320 MtrunA17_Chr1g0184081 56.923 65 27 1 236 299 20 84 1.53e-17 79.0
Msa0016320 MtrunA17_Chr8g0334801 55.932 59 26 0 237 295 52 110 1.59e-17 80.5
Msa0016320 MtrunA17_Chr5g0432821 59.016 61 25 0 233 293 120 180 1.68e-17 82.0
Msa0016320 MtrunA17_Chr1g0184061 57.812 64 26 1 230 292 70 133 1.83e-17 80.9
Msa0016320 MtrunA17_Chr3g0136541 61.111 54 21 0 239 292 42 95 2.29e-17 80.9
Msa0016320 MtrunA17_Chr2g0301181 53.448 58 27 0 237 294 19 76 2.33e-17 80.9
Msa0016320 MtrunA17_Chr1g0183981 41.593 113 53 4 235 335 73 184 2.50e-17 80.1
Msa0016320 MtrunA17_Chr5g0396301 53.968 63 27 1 235 295 16 78 4.40e-17 78.2
Msa0016320 MtrunA17_Chr1g0184031 42.202 109 50 4 237 333 84 191 5.52e-17 79.3
Msa0016320 MtrunA17_Chr5g0438831 53.125 64 30 0 236 299 45 108 5.56e-17 80.9
Msa0016320 MtrunA17_Chr1g0184011 63.636 55 19 1 239 292 86 140 9.57e-17 79.0
Msa0016320 MtrunA17_Chr7g0225131 56.667 60 23 1 235 294 27 83 1.52e-16 74.7
Msa0016320 MtrunA17_Chr7g0243431 60.317 63 18 1 237 292 78 140 3.59e-16 80.1
Msa0016320 MtrunA17_Chr8g0367911 57.143 56 24 0 237 292 44 99 5.51e-16 77.8
Msa0016320 MtrunA17_Chr1g0184071 46.429 84 39 2 235 312 67 150 6.56e-16 75.1
Msa0016320 MtrunA17_Chr1g0186671 61.017 59 22 1 237 294 19 77 7.90e-16 73.9
Msa0016320 MtrunA17_Chr4g0026931 39.130 115 66 3 237 348 131 244 8.34e-16 77.0
Msa0016320 MtrunA17_Chr7g0217991 44.144 111 56 2 235 344 40 145 9.65e-16 78.6
Msa0016320 MtrunA17_Chr1g0203861 55.556 63 28 0 232 294 39 101 1.17e-15 75.1
Msa0016320 MtrunA17_Chr5g0412641 57.143 56 24 0 237 292 46 101 1.18e-15 77.8
Msa0016320 MtrunA17_Chr7g0252381 55.932 59 26 0 234 292 39 97 1.40e-15 76.6
Msa0016320 MtrunA17_Chr7g0261151 62.069 58 21 1 237 293 20 77 1.47e-15 73.2
Msa0016320 MtrunA17_Chr7g0261101 61.017 59 22 1 237 294 20 78 1.99e-15 73.2
Msa0016320 MtrunA17_Chr6g0473971 55.738 61 27 0 232 292 49 109 3.14e-15 75.1
Msa0016320 MtrunA17_Chr6g0473961 55.556 63 28 0 232 294 49 111 3.37e-15 74.3
Msa0016320 MtrunA17_Chr6g0453661 60.345 58 23 0 235 292 36 93 3.78e-15 76.6
Msa0016320 MtrunA17_Chr7g0253424 58.065 62 24 1 237 298 39 98 4.05e-15 75.1
Msa0016320 MtrunA17_Chr6g0473941 57.377 61 26 0 232 292 28 88 4.41e-15 73.6
Msa0016320 MtrunA17_Chr1g0146191 59.375 64 24 1 235 296 43 106 4.76e-15 74.7
Msa0016320 MtrunA17_Chr1g0186681 56.667 60 24 1 237 294 19 78 4.78e-15 71.6
Msa0016320 MtrunA17_Chr4g0066931 55.357 56 25 0 237 292 53 108 5.79e-15 75.5
Msa0016320 MtrunA17_Chr6g0473881 53.968 63 29 0 232 294 105 167 5.94e-15 75.1
Msa0016320 MtrunA17_Chr6g0473931 55.556 63 28 0 232 294 28 90 6.22e-15 73.2
Msa0016320 MtrunA17_Chr4g0057241 56.452 62 26 1 233 294 11 71 7.19e-15 72.0
Msa0016320 MtrunA17_Chr2g0286161 55.357 56 25 0 237 292 50 105 7.98e-15 74.7
Msa0016320 MtrunA17_Chr3g0137831 64.407 59 21 0 235 293 6 64 8.82e-15 72.8
Msa0016320 MtrunA17_Chr2g0297331 56.716 67 28 1 229 294 6 72 8.96e-15 70.9
Msa0016320 MtrunA17_Chr3g0131601 64.516 62 22 0 232 293 71 132 9.16e-15 73.9
Msa0016320 MtrunA17_Chr6g0486711 50.588 85 37 2 235 314 45 129 1.01e-14 73.2
Msa0016320 MtrunA17_Chr6g0473741 53.968 63 29 0 232 294 61 123 1.05e-14 73.2
Msa0016320 MtrunA17_Chr6g0473781 53.968 63 29 0 232 294 52 114 1.26e-14 72.8
Msa0016320 MtrunA17_Chr7g0261181 43.860 114 46 3 237 345 13 113 1.43e-14 70.1
Msa0016320 MtrunA17_Chr6g0473981 53.968 63 29 0 232 294 49 111 1.47e-14 73.2
Msa0016320 MtrunA17_Chr8g0350701 56.897 58 25 0 235 292 25 82 1.50e-14 73.9
Msa0016320 MtrunA17_Chr1g0149331 64.912 57 20 0 237 293 7 63 1.94e-14 71.6
Msa0016320 MtrunA17_Chr5g0396191 58.730 63 26 0 237 299 11 73 2.02e-14 71.2
Msa0016320 MtrunA17_Chr8g0378811 53.731 67 30 1 237 303 55 120 2.69e-14 72.8
Msa0016320 MtrunA17_Chr6g0473861 53.968 63 29 0 232 294 58 120 3.49e-14 72.4
Msa0016320 MtrunA17_Chr6g0474001 54.098 61 28 0 232 292 49 109 5.04e-14 71.6
Msa0016320 MtrunA17_Chr6g0461271 42.991 107 54 3 224 326 21 124 7.80e-14 72.0
Msa0016320 MtrunA17_Chr2g0321071 52.308 65 29 2 232 294 42 106 2.07e-13 69.3
Msa0016320 MtrunA17_Chr1g0170471 62.000 50 18 1 245 293 91 140 2.52e-13 67.8
Msa0016320 MtrunA17_Chr3g0129421 60.606 66 26 0 228 293 161 226 2.55e-13 70.9
Msa0016320 MtrunA17_Chr5g0396171 46.774 62 33 0 239 300 26 87 2.83e-13 65.5
Msa0016320 MtrunA17_Chr1g0155751 64.407 59 21 0 237 295 39 97 3.43e-13 69.3
Msa0016320 MtrunA17_Chr1g0200931 47.059 68 33 2 233 297 19 86 8.35e-13 65.5
Msa0016320 MtrunA17_Chr1g0183961 62.712 59 21 1 237 294 27 85 8.58e-13 65.9
Msa0016320 MtrunA17_Chr6g0461941 61.111 72 27 1 225 295 7 78 1.37e-12 66.6
Msa0016320 MtrunA17_Chr5g0398081 47.761 67 29 1 232 292 44 110 1.45e-12 66.6
Msa0016320 MtrunA17_Chr6g0473771 51.724 58 28 0 237 294 43 100 1.48e-12 63.9
Msa0016320 MtrunA17_Chr3g0142081 56.923 65 28 0 237 301 39 103 2.06e-12 66.2
Msa0016320 MtrunA17_Chr5g0398091 38.776 98 50 2 232 319 49 146 2.08e-12 66.2
Msa0016320 MtrunA17_Chr1g0183931 50.000 82 38 2 220 300 84 163 2.96e-12 66.2
Msa0016320 MtrunA17_Chr3g0083501 43.056 72 41 0 245 316 3 74 2.98e-12 62.0
Msa0016320 MtrunA17_Chr4g0042761 53.448 58 27 0 235 292 46 103 3.07e-12 67.0
Msa0016320 MtrunA17_Chr5g0398061 47.761 67 29 1 232 292 44 110 5.63e-12 65.1
Msa0016320 MtrunA17_Chr1g0186741 61.667 60 22 1 235 293 71 130 9.19e-12 64.3
Msa0016320 MtrunA17_Chr5g0396181 52.542 59 28 0 237 295 21 79 1.48e-11 63.2
Msa0016320 MtrunA17_Chr3g0114761 55.738 61 25 1 235 293 23 83 2.07e-11 63.2
Msa0016320 MtrunA17_Chr5g0424051 56.452 62 26 1 233 293 92 153 3.22e-11 63.9
Msa0016320 MtrunA17_Chr6g0473791 51.852 54 26 0 232 285 52 105 3.42e-11 60.8
Msa0016320 MtrunA17_Chr7g0261201 57.143 63 26 1 232 293 93 155 3.50e-11 63.2
Msa0016320 MtrunA17_Chr1g0167781 39.516 124 66 4 178 292 15 138 4.63e-11 62.4
Msa0016320 MtrunA17_Chr7g0261171 43.269 104 48 3 237 331 85 186 4.63e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0016320 AT4G13620.1 38.693 398 154 15 20 396 54 382 2.08e-68 221
Msa0016320 AT1G22190.1 61.458 96 33 1 235 330 81 172 1.46e-35 132
Msa0016320 AT4G39780.1 46.626 163 64 6 173 323 31 182 3.73e-35 130
Msa0016320 AT1G78080.1 39.791 191 82 8 235 398 150 334 5.84e-34 129
Msa0016320 AT2G22200.1 64.368 87 26 2 237 323 71 152 5.07e-32 122
Msa0016320 AT1G36060.1 60.674 89 31 1 235 319 141 229 2.55e-31 121
Msa0016320 AT2G20880.1 75.410 61 15 0 235 295 185 245 7.90e-27 110
Msa0016320 AT5G65130.1 54.118 85 36 1 235 319 109 190 1.45e-26 107
Msa0016320 AT5G65130.2 54.118 85 36 1 235 319 111 192 1.60e-26 107
Msa0016320 AT3G16770.1 45.192 104 53 1 194 297 40 139 1.35e-24 101
Msa0016320 AT3G50260.1 47.059 102 50 1 233 330 17 118 1.22e-23 96.7
Msa0016320 AT4G28140.1 62.319 69 24 1 235 303 141 207 1.89e-23 99.8
Msa0016320 AT5G13330.1 61.765 68 26 0 226 293 28 95 2.59e-23 97.4
Msa0016320 AT4G17500.1 62.162 74 24 2 224 293 132 205 1.59e-22 96.7
Msa0016320 AT2G33710.1 61.538 65 25 0 229 293 62 126 1.82e-22 95.1
Msa0016320 AT2G33710.2 61.538 65 25 0 229 293 62 126 1.87e-22 95.5
Msa0016320 AT5G61890.1 65.574 61 21 0 233 293 86 146 2.87e-22 95.5
Msa0016320 AT4G11140.1 69.492 59 18 0 235 293 85 143 3.73e-22 95.9
Msa0016320 AT5G47220.1 66.667 63 20 1 232 293 112 174 7.46e-22 94.0
Msa0016320 AT2G23340.1 48.387 93 45 1 228 317 16 108 8.72e-22 92.0
Msa0016320 AT5G25190.1 55.422 83 36 1 235 317 6 87 1.02e-21 92.0
Msa0016320 AT4G36900.1 61.905 63 24 0 233 295 26 88 1.10e-21 92.4
Msa0016320 AT1G15360.1 66.102 59 20 0 235 293 5 63 1.27e-21 92.4
Msa0016320 AT1G15360.2 66.102 59 20 0 235 293 5 63 1.27e-21 92.4
Msa0016320 AT4G06746.1 62.712 59 22 0 235 293 34 92 2.26e-21 90.1
Msa0016320 AT2G44840.1 62.500 64 23 1 233 295 88 151 3.55e-21 91.7
Msa0016320 AT1G19210.1 56.061 66 29 0 237 302 12 77 6.43e-21 90.1
Msa0016320 AT4G27950.1 56.164 73 32 0 220 292 101 173 8.62e-21 92.8
Msa0016320 AT2G47520.1 55.714 70 31 0 237 306 50 119 1.25e-20 89.0
Msa0016320 AT5G67190.1 60.317 63 25 0 233 295 17 79 1.25e-20 89.0
Msa0016320 AT5G25390.2 57.746 71 26 1 235 305 5 71 2.20e-20 88.6
Msa0016320 AT1G71450.1 40.336 119 61 2 237 345 24 142 2.58e-20 88.2
Msa0016320 AT1G64380.1 55.340 103 41 1 233 330 132 234 2.71e-20 91.7
Msa0016320 AT5G21960.1 49.383 81 40 1 237 316 7 87 2.79e-20 89.0
Msa0016320 AT3G23230.1 68.333 60 18 1 236 294 19 78 3.54e-20 86.7
Msa0016320 AT1G74930.1 60.345 58 23 0 237 294 21 78 3.64e-20 88.2
Msa0016320 AT5G44210.1 65.517 58 20 0 236 293 32 89 5.11e-20 87.8
Msa0016320 AT2G35700.1 54.545 66 30 0 232 297 40 105 5.14e-20 87.8
Msa0016320 AT5G53290.1 67.241 58 19 0 235 292 123 180 6.12e-20 90.9
Msa0016320 AT4G16750.1 50.649 77 37 1 222 297 24 100 8.82e-20 86.7
Msa0016320 AT3G57600.1 51.765 85 33 1 221 297 4 88 9.73e-20 89.0
Msa0016320 AT1G01250.1 59.677 62 25 0 232 293 40 101 1.09e-19 86.7
Msa0016320 AT1G46768.3 55.072 69 30 1 227 295 22 89 1.10e-19 85.1
Msa0016320 AT1G46768.1 55.072 69 30 1 227 295 22 89 1.18e-19 85.5
Msa0016320 AT1G46768.2 55.072 69 30 1 227 295 22 89 1.18e-19 85.5
Msa0016320 AT5G25810.1 54.054 74 30 2 224 295 23 94 1.48e-19 87.0
Msa0016320 AT5G11590.1 43.519 108 56 3 193 295 2 109 2.18e-19 87.0
Msa0016320 AT4G31060.1 32.515 163 101 4 235 393 25 182 3.19e-19 85.5
Msa0016320 AT1G28360.1 59.677 62 25 0 233 294 8 69 3.21e-19 85.5
Msa0016320 AT3G16280.1 61.017 59 23 0 237 295 61 119 4.33e-19 86.3
Msa0016320 AT3G16280.2 61.017 59 23 0 237 295 79 137 4.74e-19 86.7
Msa0016320 AT1G72360.1 52.632 76 33 1 219 294 10 82 5.86e-19 85.1
Msa0016320 AT3G15210.1 60.000 60 24 0 236 295 24 83 7.24e-19 85.1
Msa0016320 AT4G32800.1 55.556 63 28 0 237 299 19 81 8.90e-19 85.1
Msa0016320 AT3G11020.1 68.421 57 18 0 237 293 78 134 1.41e-18 86.7
Msa0016320 AT5G43410.1 57.534 73 25 3 228 294 1 73 1.63e-18 81.6
Msa0016320 AT2G44940.1 55.385 65 29 0 231 295 94 158 2.03e-18 85.5
Msa0016320 AT5G47230.1 66.667 60 19 1 235 293 154 213 2.09e-18 85.5
Msa0016320 AT5G07580.1 46.000 100 51 2 221 317 94 193 2.12e-18 83.6
Msa0016320 AT5G05410.2 64.912 57 20 0 237 293 79 135 3.64e-18 84.7
Msa0016320 AT2G36450.1 60.000 65 25 1 231 294 9 73 4.51e-18 82.0
Msa0016320 AT1G75490.1 63.158 57 21 0 237 293 42 98 4.82e-18 82.4
Msa0016320 AT5G05410.1 64.912 57 20 0 237 293 79 135 5.04e-18 85.1
Msa0016320 AT3G61630.1 65.517 58 20 0 235 292 103 160 5.34e-18 84.7
Msa0016320 AT1G21910.1 59.649 57 23 0 237 293 50 106 5.52e-18 82.8
Msa0016320 AT5G25390.1 56.338 71 24 2 235 305 5 68 5.91e-18 81.6
Msa0016320 AT2G25820.1 55.556 63 28 0 237 299 26 88 6.29e-18 82.8
Msa0016320 AT2G46310.1 64.286 56 20 0 237 292 99 154 7.89e-18 83.6
Msa0016320 AT4G23750.2 63.793 58 21 0 235 292 120 177 8.46e-18 84.3
Msa0016320 AT4G23750.1 63.793 58 21 0 235 292 120 177 8.46e-18 84.3
Msa0016320 AT1G72360.3 61.017 59 23 0 236 294 73 131 8.67e-18 82.8
Msa0016320 AT1G72360.2 61.017 59 23 0 236 294 75 133 8.96e-18 82.8
Msa0016320 AT3G60490.1 53.968 63 29 0 237 299 71 133 1.20e-17 82.4
Msa0016320 AT3G23240.1 62.712 59 21 1 235 292 80 138 1.24e-17 81.6
Msa0016320 AT4G17490.1 65.000 60 20 1 235 293 135 194 1.35e-17 82.8
Msa0016320 AT2G40340.2 46.154 78 42 0 237 314 14 91 1.39e-17 82.8
Msa0016320 AT2G40340.5 46.154 78 42 0 237 314 14 91 1.39e-17 82.8
Msa0016320 AT2G40340.4 46.154 78 42 0 237 314 14 91 1.39e-17 82.8
Msa0016320 AT2G40340.3 46.154 78 42 0 237 314 72 149 1.99e-17 82.8
Msa0016320 AT5G51190.1 60.000 60 23 1 235 293 70 129 2.78e-17 80.9
Msa0016320 AT2G40340.1 46.154 78 42 0 237 314 72 149 2.96e-17 82.8
Msa0016320 AT2G40340.6 46.154 78 42 0 237 314 79 156 3.45e-17 82.8
Msa0016320 AT4G25470.1 58.730 63 26 0 232 294 46 108 3.88e-17 80.1
Msa0016320 AT4G25490.1 58.730 63 26 0 232 294 43 105 4.28e-17 80.1
Msa0016320 AT1G22810.1 54.098 61 26 1 237 295 14 74 4.53e-17 78.2
Msa0016320 AT3G20310.1 60.345 58 23 0 236 293 26 83 4.89e-17 80.5
Msa0016320 AT1G71520.1 52.381 63 26 1 237 295 14 76 5.23e-17 77.8
Msa0016320 AT1G50640.1 60.345 58 23 0 236 293 27 84 7.46e-17 79.7
Msa0016320 AT1G22985.1 62.295 61 20 1 235 292 73 133 7.53e-17 77.8
Msa0016320 AT5G13910.1 57.627 59 25 0 234 292 17 75 1.02e-16 79.0
Msa0016320 AT4G25480.1 57.143 63 27 0 232 294 46 108 1.18e-16 79.0
Msa0016320 AT2G31230.1 58.333 60 24 1 235 293 84 143 1.89e-16 79.0
Msa0016320 AT5G61600.1 56.667 60 25 1 235 293 86 145 2.31e-16 78.6
Msa0016320 AT1G28370.1 55.000 60 27 0 234 293 17 76 2.53e-16 76.6
Msa0016320 AT5G18450.1 64.286 56 20 0 237 292 34 89 2.99e-16 79.3
Msa0016320 AT5G07310.1 65.574 61 21 0 233 293 88 148 3.29e-16 78.6
Msa0016320 AT1G28370.2 55.000 60 27 0 234 293 55 114 3.75e-16 77.0
Msa0016320 AT1G71130.1 51.899 79 25 2 219 292 69 139 4.03e-16 75.9
Msa0016320 AT1G03800.1 51.613 62 30 0 236 297 52 113 4.78e-16 77.8
Msa0016320 AT5G19790.1 54.667 75 32 1 222 294 5 79 7.16e-16 77.4
Msa0016320 AT1G12980.1 50.725 69 34 0 231 299 51 119 1.03e-15 78.2
Msa0016320 AT2G40350.2 54.237 59 27 0 237 295 74 132 1.68e-15 74.3
Msa0016320 AT5G51990.1 57.377 61 26 0 232 292 49 109 1.73e-15 75.5
Msa0016320 AT2G40350.1 54.237 59 27 0 237 295 67 125 2.12e-15 73.6
Msa0016320 AT5G11190.1 56.000 75 27 1 235 303 5 79 3.62e-15 73.9
Msa0016320 AT1G24590.1 57.143 56 24 0 237 292 58 113 4.02e-15 75.9
Msa0016320 AT5G18560.1 52.174 69 30 1 237 302 55 123 4.17e-15 76.6
Msa0016320 AT1G43160.1 63.014 73 25 1 233 303 57 129 4.75e-15 73.6
Msa0016320 AT1G28160.1 57.143 56 24 0 237 292 39 94 6.86e-15 74.3
Msa0016320 AT4G18450.1 53.425 73 31 3 235 305 108 179 8.40e-15 75.1
Msa0016320 AT1G12890.1 50.725 69 33 1 224 292 9 76 2.68e-14 72.0
Msa0016320 AT1G77200.1 59.322 59 24 0 237 295 43 101 4.72e-14 72.0
Msa0016320 AT2G40220.1 73.214 56 15 0 237 292 55 110 8.93e-14 72.4
Msa0016320 AT5G64750.1 59.016 61 24 1 244 303 192 252 9.80e-14 72.8
Msa0016320 AT5G50080.1 56.164 73 32 0 221 293 61 133 1.01e-13 70.5
Msa0016320 AT4G34410.1 65.574 61 21 0 237 297 136 196 1.15e-13 71.2
Msa0016320 AT5G50080.2 56.164 73 32 0 221 293 70 142 1.16e-13 70.5
Msa0016320 AT5G52020.1 40.625 128 63 5 231 356 57 173 1.60e-13 70.1
Msa0016320 AT1G77640.1 59.016 61 25 0 235 295 41 101 4.22e-13 68.9
Msa0016320 AT1G63030.2 52.459 61 29 0 232 292 25 85 5.50e-13 67.4
Msa0016320 AT1G63030.1 52.459 61 29 0 232 292 25 85 5.50e-13 67.4
Msa0016320 AT1G33760.1 61.017 59 23 0 237 295 20 78 9.79e-13 66.6
Msa0016320 AT1G68550.1 71.795 39 11 0 239 277 115 153 9.88e-13 68.9
Msa0016320 AT1G68550.2 71.795 39 11 0 239 277 115 153 9.88e-13 68.9
Msa0016320 AT1G12610.1 49.180 61 31 0 232 292 25 85 1.32e-12 67.0
Msa0016320 AT2G38340.1 56.061 66 21 1 236 293 69 134 4.81e-12 65.9
Msa0016320 AT1G53910.3 55.405 74 31 1 233 304 119 192 5.63e-12 67.0
Msa0016320 AT1G53910.1 55.405 74 31 1 233 304 121 194 5.90e-12 67.0
Msa0016320 AT1G53910.2 55.405 74 31 1 233 304 121 194 5.90e-12 67.0
Msa0016320 AT3G14230.3 58.462 65 27 0 233 297 119 183 1.18e-11 66.2
Msa0016320 AT3G14230.2 58.462 65 27 0 233 297 120 184 1.23e-11 66.2
Msa0016320 AT3G14230.1 58.462 65 27 0 233 297 124 188 1.38e-11 65.9
Msa0016320 AT1G44830.1 56.250 64 27 1 233 295 31 94 1.53e-11 63.9
Msa0016320 AT3G23220.1 50.000 84 40 2 230 312 7 89 3.24e-11 61.2
Msa0016320 AT1G06160.1 61.667 60 22 1 235 293 80 139 3.30e-11 63.5
Msa0016320 AT5G61590.1 60.000 60 23 1 235 293 105 164 4.28e-11 62.4
Msa0016320 AT1G04370.1 64.407 59 20 1 237 294 20 78 8.46e-11 60.1

Find 63 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACAGAATCCAAGTATT+TGG 0.234174 1_1:-27133259 Msa0016320:CDS
TGATTAACTAAAGTGGTTAA+AGG 0.280047 1_1:+27133135 None:intergenic
TGAATCACATGCTTTAGATT+TGG 0.288999 1_1:+27132433 None:intergenic
ATATCTGAGGCTAAGACATT+AGG 0.307926 1_1:+27133021 None:intergenic
CCAAGTCTTTCAATGAGAAT+TGG 0.319046 1_1:-27132675 Msa0016320:CDS
CAGACCCTAGTCCTGTTTCT+TGG 0.319383 1_1:+27132547 None:intergenic
CTTTAGATATGGATATCATT+TGG 0.331832 1_1:-27132153 Msa0016320:CDS
ACATATCCTATGTCTCAATT+TGG 0.334467 1_1:-27132781 Msa0016320:CDS
AAAGTCAAGTTTGGAGATTT+CGG 0.337697 1_1:+27132889 None:intergenic
TGATGATCATTGAACTTTGC+AGG 0.341653 1_1:+27133108 None:intergenic
CCTCTTGTACCATACTTCAT+AGG 0.343306 1_1:+27132631 None:intergenic
ATAAAGGAGTTGAAGGTTGC+AGG 0.348799 1_1:-27132253 Msa0016320:CDS
GGAAATGGGTTGCTGAAATT+AGG 0.358324 1_1:-27132573 Msa0016320:CDS
AATTGTATCCTCCAAATACT+TGG 0.361892 1_1:+27133248 None:intergenic
CTTCATAGGTTGAGTCTTTG+TGG 0.367716 1_1:+27132645 None:intergenic
AGAGTTTCCAAAAGATTTAG+AGG 0.384387 1_1:+27132982 None:intergenic
AGGGGTGAGGCAGAGACATT+GGG 0.389274 1_1:-27132596 Msa0016320:CDS
ATTCAAGCAAATTCATTGAA+TGG 0.390014 1_1:-27132415 Msa0016320:CDS
CCAATTCTCATTGAAAGACT+TGG 0.390982 1_1:+27132675 None:intergenic
AATAGAATTGAATTCAGAAA+TGG 0.392744 1_1:+27133050 None:intergenic
TAGAATGCCATCTTTAGATA+TGG 0.395008 1_1:-27132164 Msa0016320:CDS
TGGAAAGGATGAAAGTATAA+AGG 0.402974 1_1:-27132269 Msa0016320:CDS
TTTGTTGATGATGCTGAGTT+AGG 0.403146 1_1:+27132758 None:intergenic
AAGACTCAACCTATGAAGTA+TGG 0.422712 1_1:-27132640 Msa0016320:CDS
AACAGGACTAGGGTCTGGTT+AGG 0.426277 1_1:-27132541 Msa0016320:CDS
GATGGAAATCTTTACACAAA+AGG 0.449641 1_1:-27133310 Msa0016320:CDS
AAATTAGGCTACCAAGAAAC+AGG 0.453786 1_1:-27132558 Msa0016320:CDS
TGAAAGTATAAAGGAGTTGA+AGG 0.465827 1_1:-27132260 Msa0016320:CDS
ATGATTCAAACAAAATGGAC+AGG 0.466992 1_1:-27132720 Msa0016320:CDS
AATTGAATTCAGAAATGGAT+TGG 0.469345 1_1:+27133055 None:intergenic
AAACACCTTGTGATATTGCT+TGG 0.470055 1_1:+27132362 None:intergenic
AAGGGGTGAGGCAGAGACAT+TGG 0.474365 1_1:-27132597 Msa0016320:CDS
AAATTGAGACATAGGATATG+TGG 0.503840 1_1:+27132783 None:intergenic
ACTATTTCTTGAAAACAAGT+TGG 0.510587 1_1:+27133282 None:intergenic
TGAGGCTAAGACATTAGGAT+TGG 0.514136 1_1:+27133026 None:intergenic
ATCGGAGCTACGGTTAAAGC+CGG 0.522567 1_1:+27132958 None:intergenic
ACAGCAGCATATATACTAAG+AGG 0.524138 1_1:-27132478 Msa0016320:CDS
ATGATATCCATATCTAAAGA+TGG 0.526714 1_1:+27132157 None:intergenic
CAAGAAACAGGACTAGGGTC+TGG 0.535110 1_1:-27132546 Msa0016320:CDS
ACAGGACTAGGGTCTGGTTA+GGG 0.537302 1_1:-27132540 Msa0016320:CDS
AGGTATTTGATTAACTAAAG+TGG 0.538283 1_1:+27133128 None:intergenic
AACAACTGCTTCACTTGTTG+AGG 0.538456 1_1:-27132392 Msa0016320:CDS
GTTAGGCCAAATTGAGACAT+AGG 0.542458 1_1:+27132775 None:intergenic
CTCATCCGACATCGGAGCTA+CGG 0.550368 1_1:+27132948 None:intergenic
AGCAAGGTGATTCATCAGAA+AGG 0.554248 1_1:-27132324 Msa0016320:CDS
GAAGAAGCTAAAGATACTGC+AGG 0.558284 1_1:+27132925 None:intergenic
AACAGAATCCAAGTATTTGG+AGG 0.568479 1_1:-27133256 Msa0016320:CDS
CCTATGAAGTATGGTACAAG+AGG 0.573529 1_1:-27132631 Msa0016320:CDS
GAGGATACAATTATAAGAAG+AGG 0.591475 1_1:-27133237 Msa0016320:CDS
TCGGAGCTACGGTTAAAGCC+GGG 0.597602 1_1:+27132959 None:intergenic
AATTGAGACATAGGATATGT+GGG 0.599845 1_1:+27132784 None:intergenic
TTCTACTTCAATGAAACAAG+AGG 0.610829 1_1:-27133160 Msa0016320:CDS
TTTAACCGTAGCTCCGATGT+CGG 0.611699 1_1:-27132953 Msa0016320:CDS
GGCTACCAAGAAACAGGACT+AGG 0.631241 1_1:-27132552 Msa0016320:CDS
GATGAGTATAGCATCATGGA+TGG 0.633487 1_1:+27132853 None:intergenic
GCTACCAAGAAACAGGACTA+GGG 0.634530 1_1:-27132551 Msa0016320:CDS
AGTTGATGAGTATAGCATCA+TGG 0.650458 1_1:+27132849 None:intergenic
GGGGTGAGGCAGAGACATTG+GGG 0.652356 1_1:-27132595 Msa0016320:CDS
ACTGCAGGCTCATCCGACAT+CGG 0.653229 1_1:+27132940 None:intergenic
ACAGAATGAGATATGTGATG+TGG 0.662221 1_1:-27132203 Msa0016320:CDS
CTATGAAGTATGGTACAAGA+GGG 0.662911 1_1:-27132630 Msa0016320:CDS
AAACTCCAAGCAATATCACA+AGG 0.689115 1_1:-27132367 Msa0016320:CDS
GGGTGAGGCAGAGACATTGG+GGG 0.726060 1_1:-27132594 Msa0016320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATGATTCAAACAAAA+TGG - chr1_1:27132710-27132729 Msa0016320:CDS 15.0%
!!! ATTTTATGATTCAAACAAAA+TGG - chr1_1:27132710-27132729 Msa0016320:CDS 15.0%
!! AATAGAATTGAATTCAGAAA+TGG + chr1_1:27132388-27132407 None:intergenic 20.0%
!!! AAAACTATGTTTTATATCTG+AGG + chr1_1:27132430-27132449 None:intergenic 20.0%
!! AATAGAATTGAATTCAGAAA+TGG + chr1_1:27132388-27132407 None:intergenic 20.0%
!!! AAAACTATGTTTTATATCTG+AGG + chr1_1:27132430-27132449 None:intergenic 20.0%
!! ACTATTTCTTGAAAACAAGT+TGG + chr1_1:27132156-27132175 None:intergenic 25.0%
! TGATTAACTAAAGTGGTTAA+AGG + chr1_1:27132303-27132322 None:intergenic 25.0%
! AGGTATTTGATTAACTAAAG+TGG + chr1_1:27132310-27132329 None:intergenic 25.0%
! AATTGAATTCAGAAATGGAT+TGG + chr1_1:27132383-27132402 None:intergenic 25.0%
!! TTTTGTTCCTCTAAATCTTT+TGG - chr1_1:27132446-27132465 Msa0016320:CDS 25.0%
! ATTCAAGCAAATTCATTGAA+TGG - chr1_1:27133020-27133039 Msa0016320:CDS 25.0%
! CACATTGATGAGATTAAAAA+TGG - chr1_1:27133146-27133165 Msa0016320:CDS 25.0%
! TGATGAGATTAAAAATGGAA+AGG - chr1_1:27133151-27133170 Msa0016320:CDS 25.0%
! ATGATATCCATATCTAAAGA+TGG + chr1_1:27133281-27133300 None:intergenic 25.0%
! CTTTAGATATGGATATCATT+TGG - chr1_1:27133282-27133301 Msa0016320:CDS 25.0%
!! ACTATTTCTTGAAAACAAGT+TGG + chr1_1:27132156-27132175 None:intergenic 25.0%
! TGATTAACTAAAGTGGTTAA+AGG + chr1_1:27132303-27132322 None:intergenic 25.0%
! AGGTATTTGATTAACTAAAG+TGG + chr1_1:27132310-27132329 None:intergenic 25.0%
! AATTGAATTCAGAAATGGAT+TGG + chr1_1:27132383-27132402 None:intergenic 25.0%
!! TTTTGTTCCTCTAAATCTTT+TGG - chr1_1:27132446-27132465 Msa0016320:CDS 25.0%
! ATTCAAGCAAATTCATTGAA+TGG - chr1_1:27133020-27133039 Msa0016320:CDS 25.0%
! CACATTGATGAGATTAAAAA+TGG - chr1_1:27133146-27133165 Msa0016320:CDS 25.0%
! TGATGAGATTAAAAATGGAA+AGG - chr1_1:27133151-27133170 Msa0016320:CDS 25.0%
! ATGATATCCATATCTAAAGA+TGG + chr1_1:27133281-27133300 None:intergenic 25.0%
! CTTTAGATATGGATATCATT+TGG - chr1_1:27133282-27133301 Msa0016320:CDS 25.0%
AACAACAGAATCCAAGTATT+TGG - chr1_1:27132176-27132195 Msa0016320:CDS 30.0%
AATTGTATCCTCCAAATACT+TGG + chr1_1:27132190-27132209 None:intergenic 30.0%
GAGGATACAATTATAAGAAG+AGG - chr1_1:27132198-27132217 Msa0016320:CDS 30.0%
TTCTACTTCAATGAAACAAG+AGG - chr1_1:27132275-27132294 Msa0016320:CDS 30.0%
AGAGTTTCCAAAAGATTTAG+AGG + chr1_1:27132456-27132475 None:intergenic 30.0%
AAAGTCAAGTTTGGAGATTT+CGG + chr1_1:27132549-27132568 None:intergenic 30.0%
TGCAAAAACAAAGTCAAGTT+TGG + chr1_1:27132558-27132577 None:intergenic 30.0%
!!! AAACTTGACTTTGTTTTTGC+AGG - chr1_1:27132557-27132576 Msa0016320:CDS 30.0%
AATTGAGACATAGGATATGT+GGG + chr1_1:27132654-27132673 None:intergenic 30.0%
AAATTGAGACATAGGATATG+TGG + chr1_1:27132655-27132674 None:intergenic 30.0%
ACATATCCTATGTCTCAATT+TGG - chr1_1:27132654-27132673 Msa0016320:CDS 30.0%
ATGATTCAAACAAAATGGAC+AGG - chr1_1:27132715-27132734 Msa0016320:CDS 30.0%
! TGAATCACATGCTTTAGATT+TGG + chr1_1:27133005-27133024 None:intergenic 30.0%
TCTTCTTCTCATAAAAAGCA+AGG - chr1_1:27133095-27133114 Msa0016320:CDS 30.0%
! TGGAAAGGATGAAAGTATAA+AGG - chr1_1:27133166-27133185 Msa0016320:CDS 30.0%
! TGAAAGTATAAAGGAGTTGA+AGG - chr1_1:27133175-27133194 Msa0016320:CDS 30.0%
TAGAATGCCATCTTTAGATA+TGG - chr1_1:27133271-27133290 Msa0016320:CDS 30.0%
AACAACAGAATCCAAGTATT+TGG - chr1_1:27132176-27132195 Msa0016320:CDS 30.0%
AATTGTATCCTCCAAATACT+TGG + chr1_1:27132190-27132209 None:intergenic 30.0%
GAGGATACAATTATAAGAAG+AGG - chr1_1:27132198-27132217 Msa0016320:CDS 30.0%
TTCTACTTCAATGAAACAAG+AGG - chr1_1:27132275-27132294 Msa0016320:CDS 30.0%
AGAGTTTCCAAAAGATTTAG+AGG + chr1_1:27132456-27132475 None:intergenic 30.0%
AAAGTCAAGTTTGGAGATTT+CGG + chr1_1:27132549-27132568 None:intergenic 30.0%
TGCAAAAACAAAGTCAAGTT+TGG + chr1_1:27132558-27132577 None:intergenic 30.0%
!!! AAACTTGACTTTGTTTTTGC+AGG - chr1_1:27132557-27132576 Msa0016320:CDS 30.0%
AATTGAGACATAGGATATGT+GGG + chr1_1:27132654-27132673 None:intergenic 30.0%
AAATTGAGACATAGGATATG+TGG + chr1_1:27132655-27132674 None:intergenic 30.0%
ACATATCCTATGTCTCAATT+TGG - chr1_1:27132654-27132673 Msa0016320:CDS 30.0%
ATGATTCAAACAAAATGGAC+AGG - chr1_1:27132715-27132734 Msa0016320:CDS 30.0%
! TGAATCACATGCTTTAGATT+TGG + chr1_1:27133005-27133024 None:intergenic 30.0%
TCTTCTTCTCATAAAAAGCA+AGG - chr1_1:27133095-27133114 Msa0016320:CDS 30.0%
! TGGAAAGGATGAAAGTATAA+AGG - chr1_1:27133166-27133185 Msa0016320:CDS 30.0%
! TGAAAGTATAAAGGAGTTGA+AGG - chr1_1:27133175-27133194 Msa0016320:CDS 30.0%
TAGAATGCCATCTTTAGATA+TGG - chr1_1:27133271-27133290 Msa0016320:CDS 30.0%
AACAGAATCCAAGTATTTGG+AGG - chr1_1:27132179-27132198 Msa0016320:CDS 35.0%
TGATGATCATTGAACTTTGC+AGG + chr1_1:27132330-27132349 None:intergenic 35.0%
! ATATCTGAGGCTAAGACATT+AGG + chr1_1:27132417-27132436 None:intergenic 35.0%
!! AAATCTTTTGGAAACTCTCC+CGG - chr1_1:27132458-27132477 Msa0016320:CDS 35.0%
!! AGTTGATGAGTATAGCATCA+TGG + chr1_1:27132589-27132608 None:intergenic 35.0%
!! TTTGTTGATGATGCTGAGTT+AGG + chr1_1:27132680-27132699 None:intergenic 35.0%
CCAATTCTCATTGAAAGACT+TGG + chr1_1:27132763-27132782 None:intergenic 35.0%
CCAAGTCTTTCAATGAGAAT+TGG - chr1_1:27132760-27132779 Msa0016320:CDS 35.0%
AAGACTCAACCTATGAAGTA+TGG - chr1_1:27132795-27132814 Msa0016320:CDS 35.0%
CTATGAAGTATGGTACAAGA+GGG - chr1_1:27132805-27132824 Msa0016320:CDS 35.0%
!!! ACAAGAGGGAAGCATTTTAA+AGG - chr1_1:27132819-27132838 Msa0016320:CDS 35.0%
!!! CAAGAGGGAAGCATTTTAAA+GGG - chr1_1:27132820-27132839 Msa0016320:CDS 35.0%
!!! AAGAGGGAAGCATTTTAAAG+GGG - chr1_1:27132821-27132840 Msa0016320:CDS 35.0%
AAATTAGGCTACCAAGAAAC+AGG - chr1_1:27132877-27132896 Msa0016320:CDS 35.0%
ACAGCAGCATATATACTAAG+AGG - chr1_1:27132957-27132976 Msa0016320:CDS 35.0%
AAACTCCAAGCAATATCACA+AGG - chr1_1:27133068-27133087 Msa0016320:CDS 35.0%
AAACACCTTGTGATATTGCT+TGG + chr1_1:27133076-27133095 None:intergenic 35.0%
ACAGAATGAGATATGTGATG+TGG - chr1_1:27133232-27133251 Msa0016320:CDS 35.0%
AACAGAATCCAAGTATTTGG+AGG - chr1_1:27132179-27132198 Msa0016320:CDS 35.0%
TGATGATCATTGAACTTTGC+AGG + chr1_1:27132330-27132349 None:intergenic 35.0%
! ATATCTGAGGCTAAGACATT+AGG + chr1_1:27132417-27132436 None:intergenic 35.0%
!! AAATCTTTTGGAAACTCTCC+CGG - chr1_1:27132458-27132477 Msa0016320:CDS 35.0%
!! AGTTGATGAGTATAGCATCA+TGG + chr1_1:27132589-27132608 None:intergenic 35.0%
!! TTTGTTGATGATGCTGAGTT+AGG + chr1_1:27132680-27132699 None:intergenic 35.0%
CCAATTCTCATTGAAAGACT+TGG + chr1_1:27132763-27132782 None:intergenic 35.0%
CCAAGTCTTTCAATGAGAAT+TGG - chr1_1:27132760-27132779 Msa0016320:CDS 35.0%
AAGACTCAACCTATGAAGTA+TGG - chr1_1:27132795-27132814 Msa0016320:CDS 35.0%
CTATGAAGTATGGTACAAGA+GGG - chr1_1:27132805-27132824 Msa0016320:CDS 35.0%
!!! ACAAGAGGGAAGCATTTTAA+AGG - chr1_1:27132819-27132838 Msa0016320:CDS 35.0%
!!! CAAGAGGGAAGCATTTTAAA+GGG - chr1_1:27132820-27132839 Msa0016320:CDS 35.0%
!!! AAGAGGGAAGCATTTTAAAG+GGG - chr1_1:27132821-27132840 Msa0016320:CDS 35.0%
AAATTAGGCTACCAAGAAAC+AGG - chr1_1:27132877-27132896 Msa0016320:CDS 35.0%
ACAGCAGCATATATACTAAG+AGG - chr1_1:27132957-27132976 Msa0016320:CDS 35.0%
AAACTCCAAGCAATATCACA+AGG - chr1_1:27133068-27133087 Msa0016320:CDS 35.0%
AAACACCTTGTGATATTGCT+TGG + chr1_1:27133076-27133095 None:intergenic 35.0%
ACAGAATGAGATATGTGATG+TGG - chr1_1:27133232-27133251 Msa0016320:CDS 35.0%
!! GAAAAGCTTTTGTGGTGATG+AGG + chr1_1:27132241-27132260 None:intergenic 40.0%
! CATCACCACAAAAGCTTTTC+TGG - chr1_1:27132241-27132260 Msa0016320:CDS 40.0%
! GTACACCAGAAAAGCTTTTG+TGG + chr1_1:27132249-27132268 None:intergenic 40.0%
TGAGGCTAAGACATTAGGAT+TGG + chr1_1:27132412-27132431 None:intergenic 40.0%
GAAGAAGCTAAAGATACTGC+AGG + chr1_1:27132513-27132532 None:intergenic 40.0%
GATGAGTATAGCATCATGGA+TGG + chr1_1:27132585-27132604 None:intergenic 40.0%
GTTAGGCCAAATTGAGACAT+AGG + chr1_1:27132663-27132682 None:intergenic 40.0%
! CTTCATAGGTTGAGTCTTTG+TGG + chr1_1:27132793-27132812 None:intergenic 40.0%
CCTCTTGTACCATACTTCAT+AGG + chr1_1:27132807-27132826 None:intergenic 40.0%
CCTATGAAGTATGGTACAAG+AGG - chr1_1:27132804-27132823 Msa0016320:CDS 40.0%
!! GGAAATGGGTTGCTGAAATT+AGG - chr1_1:27132862-27132881 Msa0016320:CDS 40.0%
! AACAACTGCTTCACTTGTTG+AGG - chr1_1:27133043-27133062 Msa0016320:CDS 40.0%
AGCAAGGTGATTCATCAGAA+AGG - chr1_1:27133111-27133130 Msa0016320:CDS 40.0%
ATAAAGGAGTTGAAGGTTGC+AGG - chr1_1:27133182-27133201 Msa0016320:CDS 40.0%
!! GAAAAGCTTTTGTGGTGATG+AGG + chr1_1:27132241-27132260 None:intergenic 40.0%
! CATCACCACAAAAGCTTTTC+TGG - chr1_1:27132241-27132260 Msa0016320:CDS 40.0%
! GTACACCAGAAAAGCTTTTG+TGG + chr1_1:27132249-27132268 None:intergenic 40.0%
TGAGGCTAAGACATTAGGAT+TGG + chr1_1:27132412-27132431 None:intergenic 40.0%
GAAGAAGCTAAAGATACTGC+AGG + chr1_1:27132513-27132532 None:intergenic 40.0%
GATGAGTATAGCATCATGGA+TGG + chr1_1:27132585-27132604 None:intergenic 40.0%
GTTAGGCCAAATTGAGACAT+AGG + chr1_1:27132663-27132682 None:intergenic 40.0%
! CTTCATAGGTTGAGTCTTTG+TGG + chr1_1:27132793-27132812 None:intergenic 40.0%
CCTCTTGTACCATACTTCAT+AGG + chr1_1:27132807-27132826 None:intergenic 40.0%
CCTATGAAGTATGGTACAAG+AGG - chr1_1:27132804-27132823 Msa0016320:CDS 40.0%
!! GGAAATGGGTTGCTGAAATT+AGG - chr1_1:27132862-27132881 Msa0016320:CDS 40.0%
! AACAACTGCTTCACTTGTTG+AGG - chr1_1:27133043-27133062 Msa0016320:CDS 40.0%
AGCAAGGTGATTCATCAGAA+AGG - chr1_1:27133111-27133130 Msa0016320:CDS 40.0%
ATAAAGGAGTTGAAGGTTGC+AGG - chr1_1:27133182-27133201 Msa0016320:CDS 40.0%
TTTAACCGTAGCTCCGATGT+CGG - chr1_1:27132482-27132501 Msa0016320:CDS 45.0%
!!! GGAAGCATTTTAAAGGGGTG+AGG - chr1_1:27132826-27132845 Msa0016320:CDS 45.0%
GCTACCAAGAAACAGGACTA+GGG - chr1_1:27132884-27132903 Msa0016320:CDS 45.0%
TTTAACCGTAGCTCCGATGT+CGG - chr1_1:27132482-27132501 Msa0016320:CDS 45.0%
!!! GGAAGCATTTTAAAGGGGTG+AGG - chr1_1:27132826-27132845 Msa0016320:CDS 45.0%
GCTACCAAGAAACAGGACTA+GGG - chr1_1:27132884-27132903 Msa0016320:CDS 45.0%
ATCGGAGCTACGGTTAAAGC+CGG + chr1_1:27132480-27132499 None:intergenic 50.0%
GCAGAGACATTGGGGGAAAT+GGG - chr1_1:27132848-27132867 Msa0016320:CDS 50.0%
GGCTACCAAGAAACAGGACT+AGG - chr1_1:27132883-27132902 Msa0016320:CDS 50.0%
! CAGACCCTAGTCCTGTTTCT+TGG + chr1_1:27132891-27132910 None:intergenic 50.0%
CAAGAAACAGGACTAGGGTC+TGG - chr1_1:27132889-27132908 Msa0016320:CDS 50.0%
AACAGGACTAGGGTCTGGTT+AGG - chr1_1:27132894-27132913 Msa0016320:CDS 50.0%
ACAGGACTAGGGTCTGGTTA+GGG - chr1_1:27132895-27132914 Msa0016320:CDS 50.0%
ATCGGAGCTACGGTTAAAGC+CGG + chr1_1:27132480-27132499 None:intergenic 50.0%
GCAGAGACATTGGGGGAAAT+GGG - chr1_1:27132848-27132867 Msa0016320:CDS 50.0%
GGCTACCAAGAAACAGGACT+AGG - chr1_1:27132883-27132902 Msa0016320:CDS 50.0%
! CAGACCCTAGTCCTGTTTCT+TGG + chr1_1:27132891-27132910 None:intergenic 50.0%
CAAGAAACAGGACTAGGGTC+TGG - chr1_1:27132889-27132908 Msa0016320:CDS 50.0%
AACAGGACTAGGGTCTGGTT+AGG - chr1_1:27132894-27132913 Msa0016320:CDS 50.0%
ACAGGACTAGGGTCTGGTTA+GGG - chr1_1:27132895-27132914 Msa0016320:CDS 50.0%
TCGGAGCTACGGTTAAAGCC+GGG + chr1_1:27132479-27132498 None:intergenic 55.0%
CTCATCCGACATCGGAGCTA+CGG + chr1_1:27132490-27132509 None:intergenic 55.0%
ACTGCAGGCTCATCCGACAT+CGG + chr1_1:27132498-27132517 None:intergenic 55.0%
AAGGGGTGAGGCAGAGACAT+TGG - chr1_1:27132838-27132857 Msa0016320:CDS 55.0%
AGGGGTGAGGCAGAGACATT+GGG - chr1_1:27132839-27132858 Msa0016320:CDS 55.0%
GGCAGAGACATTGGGGGAAA+TGG - chr1_1:27132847-27132866 Msa0016320:CDS 55.0%
TCGGAGCTACGGTTAAAGCC+GGG + chr1_1:27132479-27132498 None:intergenic 55.0%
CTCATCCGACATCGGAGCTA+CGG + chr1_1:27132490-27132509 None:intergenic 55.0%
ACTGCAGGCTCATCCGACAT+CGG + chr1_1:27132498-27132517 None:intergenic 55.0%
AAGGGGTGAGGCAGAGACAT+TGG - chr1_1:27132838-27132857 Msa0016320:CDS 55.0%
AGGGGTGAGGCAGAGACATT+GGG - chr1_1:27132839-27132858 Msa0016320:CDS 55.0%
GGCAGAGACATTGGGGGAAA+TGG - chr1_1:27132847-27132866 Msa0016320:CDS 55.0%
GGGGTGAGGCAGAGACATTG+GGG - chr1_1:27132840-27132859 Msa0016320:CDS 60.0%
GGGTGAGGCAGAGACATTGG+GGG - chr1_1:27132841-27132860 Msa0016320:CDS 60.0%
GGGGTGAGGCAGAGACATTG+GGG - chr1_1:27132840-27132859 Msa0016320:CDS 60.0%
GGGTGAGGCAGAGACATTGG+GGG - chr1_1:27132841-27132860 Msa0016320:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 27132126 27133331 27132126 ID=Msa0016320;Name=Msa0016320
chr1_1 mRNA 27132126 27133331 27132126 ID=Msa0016320-mRNA-1;Parent=Msa0016320;Name=Msa0016320-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|-1|0|1|-1|1|1|0|401
chr1_1 exon 27132126 27133331 27132126 ID=Msa0016320-mRNA-1:exon:9155;Parent=Msa0016320-mRNA-1
chr1_1 CDS 27132126 27133331 27132126 ID=Msa0016320-mRNA-1:cds;Parent=Msa0016320-mRNA-1
Gene Sequence

>Msa0016320

ATGGAAATCTTTACACAAAAGGAATTACCAACTTGTTTTCAAGAAATAGTAACAACAGAATCCAAGTATTTGGAGGATACAATTATAAGAAGAGGCTCTTACTCTCTCACTTCCTCATCACCACAAAAGCTTTTCTGGTGTACTTCAAATTCTACTTCAATGAAACAAGAGGTACCTTTAACCACTTTAGTTAATCAAATACCTGCAAAGTTCAATGATCATCATGATGACATGAAGAATATGAAAGCTATAAACCAATCCATTTCTGAATTCAATTCTATTTCCAATCCTAATGTCTTAGCCTCAGATATAAAACATAGTTTTGTTCCTCTAAATCTTTTGGAAACTCTCCCGGCTTTAACCGTAGCTCCGATGTCGGATGAGCCTGCAGTATCTTTAGCTTCTTCTACTTGCGCTACGCCGAAATCTCCAAACTTGACTTTGTTTTTGCAGGAACCATCCATGATGCTATACTCATCAACTTCAAATATCAAAAGTAGTGAAATCATGTCAACAACTTCAAATCCCACATATCCTATGTCTCAATTTGGCCTAACTCAGCATCATCAACAAAGTGCTTATGAATTTTATGATTCAAACAAAATGGACAGGAATATGATGACAAATCTACAATCCAAGTCTTTCAATGAGAATTGGTTGAGTACCACAAAGACTCAACCTATGAAGTATGGTACAAGAGGGAAGCATTTTAAAGGGGTGAGGCAGAGACATTGGGGGAAATGGGTTGCTGAAATTAGGCTACCAAGAAACAGGACTAGGGTCTGGTTAGGGACATTTGAAACAGCTGAAGATGCTGCAATTGCATATGATACAGCAGCATATATACTAAGAGGAGAATGTGCTCAGTTAAATTTTCCAAATCTAAAGCATGTGATTCAAGCAAATTCATTGAATGGAACAACTGCTTCACTTGTTGAGGCAAAACTCCAAGCAATATCACAAGGTGTTTCTTCTTCTCATAAAAAGCAAGGTGATTCATCAGAAAGGTTAAACAATAAGCACATTGATGAGATTAAAAATGGAAAGGATGAAAGTATAAAGGAGTTGAAGGTTGCAGGTGACATAATTGAGAGAAGCAAAAGTACACAGAATGAGATATGTGATGTGGAAACTGTTCAGTTAAGTAGAATGCCATCTTTAGATATGGATATCATTTGGAATGAACTTCTAGTTTCTGATTCATGA
Protein sequence

>Msa0016320

MEIFTQKELPTCFQEIVTTESKYLEDTIIRRGSYSLTSSSPQKLFWCTSNSTSMKQEVPLTTLVNQIPAKFNDHHDDMKNMKAINQSISEFNSISNPNVLASDIKHSFVPLNLLETLPALTVAPMSDEPAVSLASSTCATPKSPNLTLFLQEPSMMLYSSTSNIKSSEIMSTTSNPTYPMSQFGLTQHHQQSAYEFYDSNKMDRNMMTNLQSKSFNENWLSTTKTQPMKYGTRGKHFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEDAAIAYDTAAYILRGECAQLNFPNLKHVIQANSLNGTTASLVEAKLQAISQGVSSSHKKQGDSSERLNNKHIDEIKNGKDESIKELKVAGDIIERSKSTQNEICDVETVQLSRMPSLDMDIIWNELLVSDS*