AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1377520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1377520 MtrunA17_Chr7g0260971 98.624 218 3 0 1 218 1 218 8.61e-165 452
Msa1377520 MtrunA17_Chr1g0184281 59.649 228 59 10 1 218 1 205 3.04e-79 236
Msa1377520 MtrunA17_Chr7g0261031 74.528 106 27 0 9 114 3 108 4.21e-55 175
Msa1377520 MtrunA17_Chr1g0184271 71.429 105 30 0 14 118 12 116 1.84e-52 169
Msa1377520 MtrunA17_Chr8g0351721 67.857 112 36 0 5 116 9 120 7.19e-51 164
Msa1377520 MtrunA17_Chr8g0351701 55.882 136 60 0 14 149 23 158 6.03e-50 162
Msa1377520 MtrunA17_Chr6g0460951 67.961 103 33 0 13 115 39 141 8.49e-47 154
Msa1377520 MtrunA17_Chr5g0435641 64.000 100 36 0 9 108 2 101 1.50e-45 149
Msa1377520 MtrunA17_Chr7g0245871 66.667 102 34 0 14 115 27 128 3.57e-45 150
Msa1377520 MtrunA17_Chr2g0311601 56.637 113 48 1 5 117 4 115 2.43e-43 143
Msa1377520 MtrunA17_Chr4g0043421 54.237 118 52 2 1 117 1 117 6.11e-41 137
Msa1377520 MtrunA17_Chr7g0227511 60.000 115 42 2 1 115 1 111 1.36e-40 136
Msa1377520 MtrunA17_Chr7g0245861 68.367 98 29 2 6 101 4 101 3.56e-40 134
Msa1377520 MtrunA17_Chr5g0437571 56.604 106 45 1 10 115 2 106 9.37e-39 131
Msa1377520 MtrunA17_Chr3g0117121 57.273 110 46 1 6 115 2 110 2.09e-38 131
Msa1377520 MtrunA17_Chr3g0114061 48.571 140 66 4 11 148 5 140 4.42e-38 129
Msa1377520 MtrunA17_Chr4g0058651 63.542 96 34 1 13 108 10 104 1.04e-37 129
Msa1377520 MtrunA17_Chr3g0106101 56.075 107 45 2 10 115 2 107 1.39e-37 129
Msa1377520 MtrunA17_Chr6g0449641 56.881 109 46 1 7 115 2 109 2.05e-37 127
Msa1377520 MtrunA17_Chr5g0438091 42.767 159 85 4 11 164 36 193 8.29e-37 127
Msa1377520 MtrunA17_Chr5g0402611 55.357 112 49 1 8 119 2 112 4.59e-36 129
Msa1377520 MtrunA17_Chr5g0437401 43.056 144 81 1 5 148 2 144 6.92e-36 124
Msa1377520 MtrunA17_Chr6g0449651 47.761 134 68 2 8 141 61 192 1.23e-34 122
Msa1377520 MtrunA17_Chr3g0097221 54.630 108 48 1 9 116 2 108 2.36e-34 124
Msa1377520 MtrunA17_Chr3g0129071 53.333 105 48 1 11 115 44 147 3.81e-34 122
Msa1377520 MtrunA17_Chr3g0113891 50.000 112 55 1 1 112 1 111 5.83e-34 120
Msa1377520 MtrunA17_Chr5g0432451 56.250 112 48 1 4 115 33 143 7.61e-34 120
Msa1377520 MtrunA17_Chr3g0115431 55.046 109 48 1 8 116 3 110 1.51e-33 120
Msa1377520 MtrunA17_Chr4g0030001 50.000 114 55 2 3 115 13 125 1.85e-33 119
Msa1377520 MtrunA17_Chr8g0353981 56.897 116 42 2 1 116 1 108 5.13e-33 119
Msa1377520 MtrunA17_Chr6g0460941 63.636 88 32 0 14 101 7 94 1.03e-32 114
Msa1377520 MtrunA17_Chr7g0225111 43.363 113 63 1 13 125 4 115 3.36e-30 108
Msa1377520 MtrunA17_Chr5g0444351 42.742 124 69 2 15 137 6 128 7.45e-30 108
Msa1377520 MtrunA17_Chr1g0200201 50.495 101 49 1 15 115 73 172 2.13e-29 109
Msa1377520 MtrunA17_Chr4g0059901 41.509 106 61 1 10 115 6 110 1.41e-23 95.1
Msa1377520 MtrunA17_Chr8g0374601 43.689 103 57 1 14 116 26 127 2.67e-23 94.7
Msa1377520 MtrunA17_Chr8g0374591 41.748 103 59 1 14 116 8 109 1.37e-21 86.3
Msa1377520 MtrunA17_Chr8g0342351 40.566 106 62 1 11 116 9 113 9.25e-21 87.4
Msa1377520 MtrunA17_Chr2g0330201 37.383 107 66 1 10 116 15 120 7.83e-20 85.5
Msa1377520 MtrunA17_Chr6g0452671 32.824 131 87 1 11 141 8 137 1.59e-19 82.8
Msa1377520 MtrunA17_Chr6g0452691 30.645 186 117 6 15 199 10 184 8.21e-19 80.5
Msa1377520 MtrunA17_Chr6g0452661 35.780 109 68 2 15 122 10 117 1.56e-17 78.6
Msa1377520 MtrunA17_Chr8g0374581 39.806 103 60 2 14 115 8 109 3.33e-17 77.4
Msa1377520 MtrunA17_Chr4g0040831 34.188 117 66 2 8 114 9 124 2.32e-16 74.3
Msa1377520 MtrunA17_Chr4g0055441 35.780 109 68 2 15 122 3 110 5.91e-16 72.4
Msa1377520 MtrunA17_Chr2g0326041 56.250 48 20 1 13 60 32 78 1.77e-13 63.9
Msa1377520 MtrunA17_Chr5g0439111 33.654 104 67 2 15 117 10 112 4.79e-13 65.9
Msa1377520 MtrunA17_Chr2g0326051 50.000 54 27 0 62 115 7 60 3.39e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1377520 AT2G42430.1 55.645 248 77 9 1 218 1 245 2.62e-79 238
Msa1377520 AT3G58190.1 62.205 127 40 1 14 132 11 137 1.73e-53 171
Msa1377520 AT4G00210.1 57.971 138 58 0 5 142 2 139 7.67e-52 167
Msa1377520 AT3G03760.1 76.699 103 24 0 13 115 50 152 1.06e-51 168
Msa1377520 AT2G45420.1 76.000 100 24 0 17 116 40 139 1.59e-50 165
Msa1377520 AT2G42440.1 61.600 125 40 1 9 125 2 126 1.93e-50 164
Msa1377520 AT2G31310.1 61.404 114 44 0 10 123 3 116 2.74e-50 162
Msa1377520 AT5G06080.1 60.331 121 47 1 12 132 5 124 1.63e-47 154
Msa1377520 AT4G00220.1 69.000 100 31 0 17 116 20 119 1.33e-45 151
Msa1377520 AT2G45410.1 68.000 100 32 0 17 116 19 118 8.58e-45 148
Msa1377520 AT5G63090.4 58.120 117 45 2 1 117 1 113 3.52e-39 134
Msa1377520 AT5G63090.3 58.120 117 45 2 1 117 1 113 3.52e-39 134
Msa1377520 AT5G63090.2 58.120 117 45 2 1 117 1 113 3.52e-39 134
Msa1377520 AT5G63090.1 58.120 117 45 2 1 117 1 113 3.52e-39 134
Msa1377520 AT3G27650.1 56.481 108 46 1 8 115 33 139 3.79e-38 130
Msa1377520 AT2G30130.1 57.009 107 44 2 10 115 3 108 9.36e-37 127
Msa1377520 AT1G31320.1 58.696 92 37 1 10 101 9 99 4.53e-36 125
Msa1377520 AT2G30340.1 46.970 132 68 2 1 131 39 169 6.07e-36 127
Msa1377520 AT2G30340.2 46.970 132 68 2 1 131 40 170 7.86e-36 127
Msa1377520 AT1G07900.1 53.398 103 47 1 13 115 32 133 1.53e-34 122
Msa1377520 AT2G28500.1 53.398 103 47 1 13 115 54 155 1.00e-33 121
Msa1377520 AT3G11090.1 46.457 127 66 2 6 131 3 128 1.65e-33 118
Msa1377520 AT5G66870.1 39.306 173 89 4 9 180 2 159 7.32e-33 120
Msa1377520 AT1G16530.1 51.852 108 50 2 11 117 11 117 9.03e-33 116
Msa1377520 AT1G65620.1 59.091 110 44 1 7 116 2 110 9.52e-33 117
Msa1377520 AT1G65620.4 59.091 110 44 1 7 116 2 110 9.52e-33 117
Msa1377520 AT1G65620.3 59.091 110 44 1 7 116 2 110 9.52e-33 117
Msa1377520 AT1G65620.5 59.091 110 44 1 7 116 2 110 9.52e-33 117
Msa1377520 AT1G65620.2 59.091 110 44 1 7 116 2 110 9.52e-33 117
Msa1377520 AT2G23660.2 50.485 103 50 1 13 115 4 105 2.16e-31 117
Msa1377520 AT2G23660.3 50.485 103 50 1 13 115 4 105 2.16e-31 117
Msa1377520 AT2G23660.1 50.485 103 50 1 13 115 4 105 2.16e-31 117
Msa1377520 AT2G40470.2 56.190 105 45 1 11 115 17 120 3.83e-30 110
Msa1377520 AT2G40470.1 56.190 105 45 1 11 115 42 145 5.28e-30 111
Msa1377520 AT3G26660.1 44.118 102 56 1 15 116 6 106 5.05e-29 105
Msa1377520 AT3G26620.1 44.118 102 56 1 15 116 6 106 8.10e-29 105
Msa1377520 AT3G50510.1 47.115 104 54 1 13 116 11 113 1.52e-24 96.3
Msa1377520 AT3G50510.2 47.115 104 54 1 13 116 11 113 1.52e-24 96.3
Msa1377520 AT3G47870.1 38.679 106 64 1 10 115 32 136 1.76e-20 88.2
Msa1377520 AT3G13850.1 42.157 102 58 1 15 116 37 137 2.72e-20 86.7
Msa1377520 AT5G35900.1 38.532 109 66 1 15 123 6 113 4.39e-18 79.3
Msa1377520 AT1G72980.1 37.037 108 67 1 8 115 7 113 1.86e-17 78.2
Msa1377520 AT1G06280.1 41.772 79 37 2 15 89 25 98 3.42e-14 68.9
Msa1377520 AT4G22700.1 42.529 87 45 3 15 100 6 88 1.93e-12 63.9

Find 31 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATGTAAGTTGGACAAAA+TGG 0.286192 tig0019933:+61637 None:intergenic
AGTGAACTTTGAGGAGATAT+AGG 0.327596 tig0019933:+61613 None:intergenic
TGAATAGCTGCAAATCTTGC+AGG 0.329259 tig0019933:+62475 None:intergenic
ATCAATATGGCTTCTTCAAA+TGG 0.350219 tig0019933:-62601 None:intergenic
GCAGCTATTCATAAAGTGTT+TGG 0.364830 tig0019933:-62463 Msa1377520:CDS
TGTTGTCACAATTGCTTATG+AGG 0.389067 tig0019933:-62383 Msa1377520:CDS
CGTATTAGAGACCCTGTATA+TGG 0.390387 tig0019933:-62352 Msa1377520:CDS
GTGAACTTTGAGGAGATATA+GGG 0.398352 tig0019933:+61614 None:intergenic
TATGCAGGTAGCATGCTTGC+AGG 0.403290 tig0019933:-61764 Msa1377520:intron
GATATAGGGTTCATGTAAGT+TGG 0.426071 tig0019933:+61628 None:intergenic
GATGACTCAAGTGAACTTTG+AGG 0.443078 tig0019933:+61604 None:intergenic
TGAGAGACACAGCCATATAC+AGG 0.444019 tig0019933:+62340 None:intergenic
TCTTCAAATGGAACTAGCTC+TGG 0.444575 tig0019933:-62589 Msa1377520:CDS
TCTTATAATTATTACAACCT+TGG 0.449925 tig0019933:+61503 None:intergenic
CAATAATAATGATCATGACT+TGG 0.461238 tig0019933:-61464 Msa1377520:CDS
GAGAATAATAATCAATGGAC+AGG 0.471919 tig0019933:-61700 Msa1377520:CDS
ATTGTGTACCTGTTGTTGTA+AGG 0.501180 tig0019933:+62309 None:intergenic
CATAGCAGCAGCATGAATGA+TGG 0.514545 tig0019933:-61574 Msa1377520:CDS
ACATAGAGAATAATAATCAA+TGG 0.518649 tig0019933:-61705 Msa1377520:CDS
CCTTGTTCTGAGCAAAAGTA+AGG 0.518854 tig0019933:+62499 None:intergenic
AATGGAACTAGCTCTGGAAC+TGG 0.534733 tig0019933:-62583 Msa1377520:CDS
AGAGAAGATTTCTCATTCCA+AGG 0.536983 tig0019933:-61520 Msa1377520:CDS
AATAATAATGATCATGACTT+GGG 0.555968 tig0019933:-61463 Msa1377520:CDS
GCTTCACAACGTTCATGAGC+TGG 0.566405 tig0019933:+62406 None:intergenic
TCTGGAACTGGTTCTCCTTG+TGG 0.567515 tig0019933:-62571 Msa1377520:CDS
AGCTGCAAGAAATAGCGCTT+AGG 0.579306 tig0019933:-61438 Msa1377520:CDS
AAATAGCGCTTAGGATGATG+AGG 0.606714 tig0019933:-61429 Msa1377520:CDS
GAATAGCTGCAAATCTTGCA+GGG 0.610026 tig0019933:+62476 None:intergenic
AGGAACTTGCATGCTCCACA+AGG 0.611585 tig0019933:+62556 None:intergenic
TGGATAATTCATTGCTTGTG+TGG 0.639988 tig0019933:+61657 None:intergenic
GAGAGACACAGCCATATACA+GGG 0.671769 tig0019933:+62341 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATTAAAAAAATAAA+GGG + tig0019933:62017-62036 None:intergenic 0.0%
!! AATATATATTAAAAAAATAA+AGG + tig0019933:62018-62037 None:intergenic 0.0%
!! ATATATATTAAAAAAATAAA+GGG + tig0019933:62017-62036 None:intergenic 0.0%
!! AATATATATTAAAAAAATAA+AGG + tig0019933:62018-62037 None:intergenic 0.0%
!! AATTATATAAACTTCACATT+TGG - tig0019933:61738-61757 Msa1377520:CDS 15.0%
!! AATAAATAATATTCTTTGAC+TGG + tig0019933:62119-62138 None:intergenic 15.0%
!! AATTATATAAACTTCACATT+TGG - tig0019933:61738-61757 Msa1377520:CDS 15.0%
!! AATAAATAATATTCTTTGAC+TGG + tig0019933:62119-62138 None:intergenic 15.0%
!!! AGTTTTCTTTTTAATTATGC+AGG - tig0019933:62239-62258 Msa1377520:intron 20.0%
!! ACATAGAGAATAATAATCAA+TGG - tig0019933:62313-62332 Msa1377520:intron 20.0%
!! TCTTATAATTATTACAACCT+TGG + tig0019933:62518-62537 None:intergenic 20.0%
!! AATAATAATGATCATGACTT+GGG - tig0019933:62555-62574 Msa1377520:CDS 20.0%
!!! AGTTTTCTTTTTAATTATGC+AGG - tig0019933:62239-62258 Msa1377520:intron 20.0%
!! ACATAGAGAATAATAATCAA+TGG - tig0019933:62313-62332 Msa1377520:intron 20.0%
!! TCTTATAATTATTACAACCT+TGG + tig0019933:62518-62537 None:intergenic 20.0%
!! AATAATAATGATCATGACTT+GGG - tig0019933:62555-62574 Msa1377520:CDS 20.0%
!!! TTCTAATTAAAGGTGTTGTT+AGG - tig0019933:61852-61871 Msa1377520:intron 25.0%
!!! AGTTCTAAAAAAAACTTTGG+TGG + tig0019933:61963-61982 None:intergenic 25.0%
!!! GCAAGTTCTAAAAAAAACTT+TGG + tig0019933:61966-61985 None:intergenic 25.0%
! ATCACCTTAATGAATTCTAT+TGG - tig0019933:62201-62220 Msa1377520:intron 25.0%
! TGTACCAATAGAATTCATTA+AGG + tig0019933:62208-62227 None:intergenic 25.0%
! CAATAATAATGATCATGACT+TGG - tig0019933:62554-62573 Msa1377520:CDS 25.0%
!!! TTCTAATTAAAGGTGTTGTT+AGG - tig0019933:61852-61871 Msa1377520:intron 25.0%
!!! AGTTCTAAAAAAAACTTTGG+TGG + tig0019933:61963-61982 None:intergenic 25.0%
!!! GCAAGTTCTAAAAAAAACTT+TGG + tig0019933:61966-61985 None:intergenic 25.0%
! ATCACCTTAATGAATTCTAT+TGG - tig0019933:62201-62220 Msa1377520:intron 25.0%
! TGTACCAATAGAATTCATTA+AGG + tig0019933:62208-62227 None:intergenic 25.0%
! CAATAATAATGATCATGACT+TGG - tig0019933:62554-62573 Msa1377520:CDS 25.0%
GCACTAACACTTCTAATTAA+AGG - tig0019933:61842-61861 Msa1377520:intron 30.0%
GAGAATAATAATCAATGGAC+AGG - tig0019933:62318-62337 Msa1377520:CDS 30.0%
! TTCATGTAAGTTGGACAAAA+TGG + tig0019933:62384-62403 None:intergenic 30.0%
GCACTAACACTTCTAATTAA+AGG - tig0019933:61842-61861 Msa1377520:intron 30.0%
GAGAATAATAATCAATGGAC+AGG - tig0019933:62318-62337 Msa1377520:CDS 30.0%
! TTCATGTAAGTTGGACAAAA+TGG + tig0019933:62384-62403 None:intergenic 30.0%
TAAGGTGCAAAAATGCAATC+AGG + tig0019933:61504-61523 None:intergenic 35.0%
! GCAGCTATTCATAAAGTGTT+TGG - tig0019933:61555-61574 Msa1377520:CDS 35.0%
TGTTGTCACAATTGCTTATG+AGG - tig0019933:61635-61654 Msa1377520:CDS 35.0%
! CATTTTTGCCTTACAACAAC+AGG - tig0019933:61701-61720 Msa1377520:CDS 35.0%
ATTGTGTACCTGTTGTTGTA+AGG + tig0019933:61712-61731 None:intergenic 35.0%
ATGTGATCAATCACATGTGT+AGG + tig0019933:61901-61920 None:intergenic 35.0%
! CTACTCCTGTCTTTTTCTTA+AGG - tig0019933:62074-62093 Msa1377520:intron 35.0%
AAGAGCCTTAAGAAAAAGAC+AGG + tig0019933:62082-62101 None:intergenic 35.0%
TGGATAATTCATTGCTTGTG+TGG + tig0019933:62364-62383 None:intergenic 35.0%
GATATAGGGTTCATGTAAGT+TGG + tig0019933:62393-62412 None:intergenic 35.0%
! GTGAACTTTGAGGAGATATA+GGG + tig0019933:62407-62426 None:intergenic 35.0%
! AGTGAACTTTGAGGAGATAT+AGG + tig0019933:62408-62427 None:intergenic 35.0%
AGAGAAGATTTCTCATTCCA+AGG - tig0019933:62498-62517 Msa1377520:CDS 35.0%
TAAGGTGCAAAAATGCAATC+AGG + tig0019933:61504-61523 None:intergenic 35.0%
! GCAGCTATTCATAAAGTGTT+TGG - tig0019933:61555-61574 Msa1377520:CDS 35.0%
TGTTGTCACAATTGCTTATG+AGG - tig0019933:61635-61654 Msa1377520:CDS 35.0%
! CATTTTTGCCTTACAACAAC+AGG - tig0019933:61701-61720 Msa1377520:CDS 35.0%
ATTGTGTACCTGTTGTTGTA+AGG + tig0019933:61712-61731 None:intergenic 35.0%
ATGTGATCAATCACATGTGT+AGG + tig0019933:61901-61920 None:intergenic 35.0%
! CTACTCCTGTCTTTTTCTTA+AGG - tig0019933:62074-62093 Msa1377520:intron 35.0%
AAGAGCCTTAAGAAAAAGAC+AGG + tig0019933:62082-62101 None:intergenic 35.0%
TGGATAATTCATTGCTTGTG+TGG + tig0019933:62364-62383 None:intergenic 35.0%
GATATAGGGTTCATGTAAGT+TGG + tig0019933:62393-62412 None:intergenic 35.0%
! GTGAACTTTGAGGAGATATA+GGG + tig0019933:62407-62426 None:intergenic 35.0%
! AGTGAACTTTGAGGAGATAT+AGG + tig0019933:62408-62427 None:intergenic 35.0%
AGAGAAGATTTCTCATTCCA+AGG - tig0019933:62498-62517 Msa1377520:CDS 35.0%
TCTTCAAATGGAACTAGCTC+TGG - tig0019933:61429-61448 Msa1377520:CDS 40.0%
! CAGGTGCACATTTTCTTCTA+AGG + tig0019933:61485-61504 None:intergenic 40.0%
! CCTTGTTCTGAGCAAAAGTA+AGG + tig0019933:61522-61541 None:intergenic 40.0%
!! CCTTACTTTTGCTCAGAACA+AGG - tig0019933:61519-61538 Msa1377520:CDS 40.0%
GAATAGCTGCAAATCTTGCA+GGG + tig0019933:61545-61564 None:intergenic 40.0%
TGAATAGCTGCAAATCTTGC+AGG + tig0019933:61546-61565 None:intergenic 40.0%
CGTATTAGAGACCCTGTATA+TGG - tig0019933:61666-61685 Msa1377520:CDS 40.0%
ACTACACTTACTCACGTATC+TGG - tig0019933:61820-61839 Msa1377520:intron 40.0%
AGAAAAAGACAGGAGTAGTG+TGG + tig0019933:62072-62091 None:intergenic 40.0%
TAAGGCTCTTTGATGCTTCA+AGG - tig0019933:62092-62111 Msa1377520:intron 40.0%
AAGGCTCTTTGATGCTTCAA+GGG - tig0019933:62093-62112 Msa1377520:intron 40.0%
GATGACTCAAGTGAACTTTG+AGG + tig0019933:62417-62436 None:intergenic 40.0%
AAATAGCGCTTAGGATGATG+AGG - tig0019933:62589-62608 Msa1377520:CDS 40.0%
TCTTCAAATGGAACTAGCTC+TGG - tig0019933:61429-61448 Msa1377520:CDS 40.0%
! CAGGTGCACATTTTCTTCTA+AGG + tig0019933:61485-61504 None:intergenic 40.0%
! CCTTGTTCTGAGCAAAAGTA+AGG + tig0019933:61522-61541 None:intergenic 40.0%
!! CCTTACTTTTGCTCAGAACA+AGG - tig0019933:61519-61538 Msa1377520:CDS 40.0%
GAATAGCTGCAAATCTTGCA+GGG + tig0019933:61545-61564 None:intergenic 40.0%
TGAATAGCTGCAAATCTTGC+AGG + tig0019933:61546-61565 None:intergenic 40.0%
CGTATTAGAGACCCTGTATA+TGG - tig0019933:61666-61685 Msa1377520:CDS 40.0%
ACTACACTTACTCACGTATC+TGG - tig0019933:61820-61839 Msa1377520:intron 40.0%
AGAAAAAGACAGGAGTAGTG+TGG + tig0019933:62072-62091 None:intergenic 40.0%
TAAGGCTCTTTGATGCTTCA+AGG - tig0019933:62092-62111 Msa1377520:intron 40.0%
AAGGCTCTTTGATGCTTCAA+GGG - tig0019933:62093-62112 Msa1377520:intron 40.0%
GATGACTCAAGTGAACTTTG+AGG + tig0019933:62417-62436 None:intergenic 40.0%
AAATAGCGCTTAGGATGATG+AGG - tig0019933:62589-62608 Msa1377520:CDS 40.0%
!! AATGGAACTAGCTCTGGAAC+TGG - tig0019933:61435-61454 Msa1377520:CDS 45.0%
GAGAGACACAGCCATATACA+GGG + tig0019933:61680-61699 None:intergenic 45.0%
TGAGAGACACAGCCATATAC+AGG + tig0019933:61681-61700 None:intergenic 45.0%
CATAGCAGCAGCATGAATGA+TGG - tig0019933:62444-62463 Msa1377520:CDS 45.0%
AGCTGCAAGAAATAGCGCTT+AGG - tig0019933:62580-62599 Msa1377520:CDS 45.0%
!! AATGGAACTAGCTCTGGAAC+TGG - tig0019933:61435-61454 Msa1377520:CDS 45.0%
GAGAGACACAGCCATATACA+GGG + tig0019933:61680-61699 None:intergenic 45.0%
TGAGAGACACAGCCATATAC+AGG + tig0019933:61681-61700 None:intergenic 45.0%
CATAGCAGCAGCATGAATGA+TGG - tig0019933:62444-62463 Msa1377520:CDS 45.0%
AGCTGCAAGAAATAGCGCTT+AGG - tig0019933:62580-62599 Msa1377520:CDS 45.0%
!! TATATATTAAAAAAATAAAG+GGG + tig0019933:62016-62035 None:intergenic 5.0%
!! TTTAATATATATTAGAAATT+TGG - tig0019933:62025-62044 Msa1377520:intron 5.0%
!! TATATATTAAAAAAATAAAG+GGG + tig0019933:62016-62035 None:intergenic 5.0%
!! TTTAATATATATTAGAAATT+TGG - tig0019933:62025-62044 Msa1377520:intron 5.0%
! TCTGGAACTGGTTCTCCTTG+TGG - tig0019933:61447-61466 Msa1377520:CDS 50.0%
AGGAACTTGCATGCTCCACA+AGG + tig0019933:61465-61484 None:intergenic 50.0%
GCTTCACAACGTTCATGAGC+TGG + tig0019933:61615-61634 None:intergenic 50.0%
TATGCAGGTAGCATGCTTGC+AGG - tig0019933:62254-62273 Msa1377520:intron 50.0%
! TCTGGAACTGGTTCTCCTTG+TGG - tig0019933:61447-61466 Msa1377520:CDS 50.0%
AGGAACTTGCATGCTCCACA+AGG + tig0019933:61465-61484 None:intergenic 50.0%
GCTTCACAACGTTCATGAGC+TGG + tig0019933:61615-61634 None:intergenic 50.0%
TATGCAGGTAGCATGCTTGC+AGG - tig0019933:62254-62273 Msa1377520:intron 50.0%
GTTAGGTGTTCGACACGTGC+AGG - tig0019933:61869-61888 Msa1377520:intron 55.0%
GTTAGGTGTTCGACACGTGC+AGG - tig0019933:61869-61888 Msa1377520:intron 55.0%
AGGTGTTCGACACGTGCAGG+CGG - tig0019933:61872-61891 Msa1377520:intron 60.0%
AGGTGTTCGACACGTGCAGG+CGG - tig0019933:61872-61891 Msa1377520:intron 60.0%
Chromosome Type Strat End Strand Name
tig0019933 gene 61423 62617 61423 ID=Msa1377520;Name=Msa1377520
tig0019933 mRNA 61423 62617 61423 ID=Msa1377520-mRNA-1;Parent=Msa1377520;Name=Msa1377520-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|2|0|218
tig0019933 exon 62318 62617 62318 ID=Msa1377520-mRNA-1:exon:5695;Parent=Msa1377520-mRNA-1
tig0019933 exon 61423 61779 61423 ID=Msa1377520-mRNA-1:exon:5694;Parent=Msa1377520-mRNA-1
tig0019933 CDS 62318 62617 62318 ID=Msa1377520-mRNA-1:cds;Parent=Msa1377520-mRNA-1
tig0019933 CDS 61423 61779 61423 ID=Msa1377520-mRNA-1:cds;Parent=Msa1377520-mRNA-1
Gene Sequence

>Msa1377520

ATGGCTTCTTCAAATGGAACTAGCTCTGGAACTGGTTCTCCTTGTGGAGCATGCAAGTTCCTTAGAAGAAAATGTGCACCTGATTGCATTTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCAAGATTTGCAGCTATTCATAAAGTGTTTGGTGCTAGCAATGTTTCTAAGTTGCTTTTGCATATACCAGCTCATGAACGTTGTGAAGCTGTTGTCACAATTGCTTATGAGGCTCAAGCTCGTATTAGAGACCCTGTATATGGCTGTGTCTCTCACATTTTTGCCTTACAACAACAGGTAGCATGCTTGCAGGCACAATTGATGCAAGTGAAATCTCAGCTGTCACATAACATAGAGAATAATAATCAATGGACAGGAAACAATAATAATGTTGCTGCCACACAAGCAATGAATTATCCATTTTGTCCAACTTACATGAACCCTATATCTCCTCAAAGTTCACTTGAGTCATCAATTGATCATAGCAGCAGCATGAATGATGGAATGATGAGCATGCAAGATGTACAAAGTAGCAGAGAAGATTTCTCATTCCAAGGTTGTAATAATTATAAGAAAAGAATGTCACATAACAATAATAATGATCATGACTTGGGTGAGCTGCAAGAAATAGCGCTTAGGATGATGAGGAACTAA

Protein sequence

>Msa1377520

MASSNGTSSGTGSPCGACKFLRRKCAPDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHERCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKSQLSHNIENNNQWTGNNNNVAATQAMNYPFCPTYMNPISPQSSLESSIDHSSSMNDGMMSMQDVQSSREDFSFQGCNNYKKRMSHNNNNDHDLGELQEIALRMMRN*