AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0349930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0349930 MtrunA17_Chr3g0083901 93.884 327 7 1 1 327 1 314 0.0 616
Msa0349930 MtrunA17_Chr8g0352621 75.229 327 67 2 1 327 1 313 0.0 514
Msa0349930 MtrunA17_Chr8g0352611 69.419 327 86 2 1 327 1 313 1.49e-163 458
Msa0349930 MtrunA17_Chr8g0352591 67.385 325 82 1 1 325 1 301 3.61e-158 444
Msa0349930 MtrunA17_Chr3g0083921 65.138 327 101 1 1 327 1 314 8.31e-156 439
Msa0349930 MtrunA17_Chr2g0293441 44.753 324 166 1 1 324 1 311 6.14e-103 304
Msa0349930 MtrunA17_Chr5g0425971 44.817 328 167 2 1 327 1 315 2.32e-95 285
Msa0349930 MtrunA17_Chr8g0382281 46.319 326 161 2 1 325 1 313 2.84e-93 280
Msa0349930 MtrunA17_Chr8g0352571 39.308 318 177 2 11 325 12 316 2.48e-71 224
Msa0349930 MtrunA17_Chr8g0393281 37.117 326 189 4 1 324 1 312 6.74e-68 215
Msa0349930 MtrunA17_Chr6g0479411 36.778 329 192 4 1 327 28 342 4.46e-65 208
Msa0349930 MtrunA17_Chr6g0479421 37.082 329 191 4 1 327 1 315 1.36e-63 204
Msa0349930 MtrunA17_Chr1g0162071 34.049 326 199 4 1 324 1 312 3.08e-60 195
Msa0349930 MtrunA17_Chr1g0210981 35.366 328 196 4 1 326 1 314 1.44e-58 191
Msa0349930 MtrunA17_Chr6g0479391 34.405 311 189 3 15 324 16 312 1.93e-53 177
Msa0349930 MtrunA17_Chr8g0352581 34.347 329 178 7 14 325 5 312 1.02e-49 168
Msa0349930 MtrunA17_Chr6g0461141 25.667 300 204 4 33 325 23 310 3.38e-28 111
Msa0349930 MtrunA17_Chr3g0084011 65.753 73 25 0 1 73 1 73 7.27e-27 102
Msa0349930 MtrunA17_Chr3g0084021 72.581 62 17 0 160 221 8 69 2.22e-25 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0349930 AT5G12380.1 50.926 324 146 1 1 324 1 311 1.42e-116 339
Msa0349930 AT1G35720.1 48.632 329 154 3 1 327 1 316 1.06e-104 309
Msa0349930 AT5G10230.1 47.866 328 156 3 1 327 1 314 7.14e-101 300
Msa0349930 AT5G65020.1 47.720 329 157 3 1 327 1 316 8.00e-100 297
Msa0349930 AT5G10220.1 47.273 330 157 4 1 327 1 316 2.30e-99 296
Msa0349930 AT5G65020.2 48.026 304 144 2 25 327 11 301 3.37e-94 282
Msa0349930 AT2G38760.1 39.275 331 181 4 1 324 1 318 7.45e-76 236
Msa0349930 AT1G68090.1 35.276 326 196 3 1 324 1 313 6.97e-62 200
Msa0349930 AT2G38750.2 33.333 321 176 8 25 327 2 302 2.15e-44 154
Msa0349930 AT2G38750.1 33.333 321 176 8 25 327 19 319 2.43e-44 154
Msa0349930 AT1G68090.2 33.460 263 160 3 1 261 1 250 7.90e-44 151

Find 74 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGCCATTATCACAATTT+TGG 0.075813 3_1:-14323080 Msa0349930:CDS
CGCAATGCAATCAAGAAATT+TGG 0.087435 3_1:-14321455 Msa0349930:CDS
GCCTCAGTTTGTGCCAATTT+TGG 0.143057 3_1:+14322237 None:intergenic
CTGACCACATAAACATTATT+TGG 0.151017 3_1:+14322457 None:intergenic
GAAGTTCATCCTCACTCTTT+TGG 0.245293 3_1:-14321294 Msa0349930:CDS
TAGCTGTGTGCAATGTCTTC+TGG 0.298653 3_1:+14321742 None:intergenic
TTGGATTGGTGAGCTCATTT+AGG 0.322139 3_1:-14322281 Msa0349930:CDS
ATGACCCAAAATTGTGATAA+TGG 0.326573 3_1:+14323075 None:intergenic
TTCATCTTTGTAGAAATTGC+TGG 0.328883 3_1:-14321784 Msa0349930:intron
AGATGAGATCAATCCAAAAT+TGG 0.364053 3_1:-14322250 Msa0349930:CDS
GGTGAGCTCATTTAGGTATG+AGG 0.370400 3_1:-14322274 Msa0349930:CDS
GTAGTCCCCTGAGGTTTCCT+TGG 0.401072 3_1:+14321319 None:intergenic
TCTGGAAATCATCAGATGTT+TGG 0.401366 3_1:+14321760 None:intergenic
CATCTTGAACAGGAGATGTT+TGG 0.417110 3_1:+14324750 None:intergenic
GTTACAAATTTGAGAGAGAA+AGG 0.418117 3_1:-14324828 None:intergenic
ACAGATTAGAAAAGCTTATG+AGG 0.422078 3_1:-14323032 Msa0349930:CDS
AGCAGACACATCTTCTTCAA+TGG 0.467505 3_1:+14322525 None:intergenic
GATTGTGACAAGGGCTGAAA+AGG 0.472813 3_1:-14321405 Msa0349930:CDS
AGAGCCTCAGCATCTTGAAC+AGG 0.477894 3_1:+14324740 None:intergenic
ACGCTTGTAGCGGTTATGAT+AGG 0.478212 3_1:+14322549 None:intergenic
GTCACCAAATAATGTTTATG+TGG 0.488787 3_1:-14322461 Msa0349930:intron
AGAAATCTCTGGTGACTTTG+AGG 0.496880 3_1:-14322972 Msa0349930:intron
GCTATCAACTGAAGAGCTCT+TGG 0.504256 3_1:-14322584 Msa0349930:CDS
GCAACAATGAAGAAGTCGTT+AGG 0.507578 3_1:-14322179 Msa0349930:CDS
CGTCTCGAGTCAGAAATCTC+TGG 0.515167 3_1:-14322983 Msa0349930:CDS
CACCACCGGTCATCTTCGCC+AGG 0.524516 3_1:-14322500 Msa0349930:CDS
TGAACAACAATGGTGGCCAT+TGG 0.524982 3_1:+14324776 None:intergenic
AAAACAGCATCTCGGTCCGC+AGG 0.528440 3_1:+14322670 None:intergenic
GAAAGTGTCAAGGAAAAGAA+AGG 0.529912 3_1:-14322201 Msa0349930:CDS
AAATTTGGAACCGATGAAGA+TGG 0.530403 3_1:-14321440 Msa0349930:CDS
GCAGTGTCCAAGGAAACCTC+AGG 0.532254 3_1:-14321326 Msa0349930:CDS
TGCCATGTTCATCTCGATAA+CGG 0.533113 3_1:+14322112 None:intergenic
ACATGGCATCTCCATTAGTA+AGG 0.533720 3_1:-14322097 Msa0349930:intron
GTGAGCTCATTTAGGTATGA+GGG 0.545690 3_1:-14322273 Msa0349930:CDS
ACTTGCCTGGCGAAGATGAC+CGG 0.547219 3_1:+14322495 None:intergenic
TCGTTAGGATTCTTACTACA+AGG 0.547724 3_1:-14322164 Msa0349930:CDS
TCCAAAATTGGCACAAACTG+AGG 0.551400 3_1:-14322238 Msa0349930:CDS
GCTCTCCGACTTGCTTTCAA+AGG 0.560633 3_1:-14324722 Msa0349930:intron
TCTTGAAGATGCAGTGTCCA+AGG 0.561269 3_1:-14321336 Msa0349930:CDS
TTATTCAGAGGGCTGTGTAC+CGG 0.563269 3_1:-14322705 Msa0349930:intron
ACAATAAAGAATGACTTGCC+TGG 0.575669 3_1:+14322482 None:intergenic
ATCTCCTGTTCAAGATGCTG+AGG 0.576916 3_1:-14324744 Msa0349930:CDS
TTCAGAGGGCTGTGTACCGG+TGG 0.577783 3_1:-14322702 Msa0349930:intron
CAAGGGCTGAAAAGGATCTG+AGG 0.584816 3_1:-14321397 Msa0349930:CDS
AGGATGGGGTGCTGATAACA+AGG 0.586318 3_1:-14323098 Msa0349930:CDS
ATCAATGTAGCAATCAGGAA+TGG 0.588048 3_1:-14322646 Msa0349930:CDS
AAGGGCTGAAAAGGATCTGA+GGG 0.591740 3_1:-14321396 Msa0349930:CDS
GGCTGTGTACCGGTGGATGT+TGG 0.594758 3_1:-14322695 Msa0349930:CDS
CTGAAGAGCTCTTGGCAGTG+AGG 0.598822 3_1:-14322576 Msa0349930:CDS
GAACTTCTTGTAGTCCCCTG+AGG 0.600520 3_1:+14321310 None:intergenic
GATGTGTCTGCTCACACCAC+CGG 0.601797 3_1:-14322514 Msa0349930:CDS
CAGATTAGAAAAGCTTATGA+GGG 0.602704 3_1:-14323031 Msa0349930:CDS
GCGGCTCAGTCCATCTTCAT+CGG 0.605259 3_1:+14321430 None:intergenic
CAAGCTAACTATCACTCCAA+TGG 0.605638 3_1:-14324792 Msa0349930:exon
AACCGTTATCGAGATGAACA+TGG 0.608246 3_1:-14322114 Msa0349930:CDS
CAGCCCTTGTCACAATCACG+CGG 0.616887 3_1:+14321411 None:intergenic
CCGCAGGTTCCAACATCCAC+CGG 0.620787 3_1:+14322686 None:intergenic
CTTCAATGGAACGCTTGTAG+CGG 0.622806 3_1:+14322539 None:intergenic
CATTGATCAAAACAGCATCT+CGG 0.627769 3_1:+14322662 None:intergenic
GTCATAGAAATGTTCATCAG+AGG 0.629014 3_1:-14323057 Msa0349930:CDS
TATTATTCATGAAAGTGTCA+AGG 0.631217 3_1:-14322211 Msa0349930:CDS
CCGGTGGATGTTGGAACCTG+CGG 0.642806 3_1:-14322686 Msa0349930:CDS
CATGTTTCCCCAAAAGAGTG+AGG 0.645029 3_1:+14321285 None:intergenic
CAGTGTCCAAGGAAACCTCA+GGG 0.646874 3_1:-14321325 Msa0349930:CDS
AGATTAGAAAAGCTTATGAG+GGG 0.656382 3_1:-14323030 Msa0349930:CDS
ATTCACCTTTGAAAGCAAGT+CGG 0.657051 3_1:+14324717 None:intergenic
TGAGCCGCGTGATTGTGACA+AGG 0.658507 3_1:-14321415 Msa0349930:CDS
TGCCTGGCGAAGATGACCGG+TGG 0.667284 3_1:+14322498 None:intergenic
AAGGAGCAAAACTCAACTTG+TGG 0.671520 3_1:-14322145 Msa0349930:CDS
GAGCCGCGTGATTGTGACAA+GGG 0.685501 3_1:-14321414 Msa0349930:CDS
TGGCAACAAAGATTATCATG+TGG 0.699113 3_1:-14322626 Msa0349930:CDS
TTGGCTATGAACAACAATGG+TGG 0.770123 3_1:+14324769 None:intergenic
AGTGTCCAAGGAAACCTCAG+GGG 0.777060 3_1:-14321324 Msa0349930:CDS
TGTTTGGCTATGAACAACAA+TGG 0.778872 3_1:+14324766 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATTGATATACTTTAA+AGG - chr3_1:14321785-14321804 Msa0349930:intron 10.0%
!! ATTTCAAAATAATACAATTT+AGG + chr3_1:14321888-14321907 None:intergenic 10.0%
!! AAAAAATTAAACTTGTAAAA+GGG + chr3_1:14322221-14322240 None:intergenic 10.0%
!! TAAAAAATTAAACTTGTAAA+AGG + chr3_1:14322222-14322241 None:intergenic 10.0%
!!! ATTTTCTTTTCTATAAAAAA+AGG + chr3_1:14322380-14322399 None:intergenic 10.0%
!!! AAAAGTACATTAAAAAAAAT+AGG + chr3_1:14323364-14323383 None:intergenic 10.0%
!! ATTGATTAATCATAATAATG+TGG - chr3_1:14321471-14321490 Msa0349930:intron 15.0%
!!! CTTTTTTTTTTTCGAAAATA+AGG + chr3_1:14321707-14321726 None:intergenic 15.0%
!!! TCGAAAAAAAAAAAGATTTT+AGG - chr3_1:14321712-14321731 Msa0349930:CDS 15.0%
!!! ATAACATACACTTTTTTTTA+AGG - chr3_1:14322003-14322022 Msa0349930:intron 15.0%
!!! TTTTTATAGAACATTTTTAC+CGG - chr3_1:14322236-14322255 Msa0349930:CDS 15.0%
!! TTAAAAAAAATAGGAAAACA+AGG + chr3_1:14323355-14323374 None:intergenic 15.0%
!!! ATTGTTTTATAAAAGACTTT+CGG + chr3_1:14324117-14324136 None:intergenic 15.0%
!!! TTTTATTTATTTGATGTGCT+AGG - chr3_1:14321443-14321462 Msa0349930:CDS 20.0%
!!! CTTTAAAGAAAATATATCTC+TGG + chr3_1:14321565-14321584 None:intergenic 20.0%
!!! TAATACAATTTAGGTTTTAG+TGG + chr3_1:14321879-14321898 None:intergenic 20.0%
!! ACCATTAATTTATTCATCAA+CGG + chr3_1:14323233-14323252 None:intergenic 20.0%
!! TTTGATTATAGTTGTACTAA+CGG - chr3_1:14323766-14323785 Msa0349930:intron 20.0%
!!! TTTATTTTGTACCTTACTAA+TGG + chr3_1:14324021-14324040 None:intergenic 20.0%
!!! ACTTTTTCCATTTAAAGATA+AGG - chr3_1:14324043-14324062 Msa0349930:intron 20.0%
!!! ATAATTTTCCAAATATGTCT+AGG - chr3_1:14324621-14324640 Msa0349930:intron 20.0%
!!! ATTTTAACCATGCTAGATTA+TGG - chr3_1:14321512-14321531 Msa0349930:intron 25.0%
!! TTTTAACCATGCTAGATTAT+GGG - chr3_1:14321513-14321532 Msa0349930:intron 25.0%
! TACAATTTGAGAAATCAAAC+CGG + chr3_1:14322258-14322277 None:intergenic 25.0%
! AGGAACATAAAAAAAGCTTA+TGG + chr3_1:14322304-14322323 None:intergenic 25.0%
!!! GAAAATCATTTTTGTTAGCT+AGG - chr3_1:14322394-14322413 Msa0349930:intron 25.0%
! TGAATGAATAATCAATACCA+AGG + chr3_1:14322459-14322478 None:intergenic 25.0%
!! ATTTCTTTTAAGCAAAGTCT+CGG + chr3_1:14322943-14322962 None:intergenic 25.0%
!!! ATTTATTTTTCAAACTCTGC+AGG - chr3_1:14322986-14323005 Msa0349930:CDS 25.0%
!! ACCGTTGATGAATAAATTAA+TGG - chr3_1:14323229-14323248 Msa0349930:intron 25.0%
! TACAACTATAATCAAAACCA+TGG + chr3_1:14323762-14323781 None:intergenic 25.0%
!!! TATTATTCATGAAAGTGTCA+AGG - chr3_1:14323893-14323912 Msa0349930:intron 25.0%
!! AATTATTTTCCGTATGAACA+AGG + chr3_1:14324276-14324295 None:intergenic 25.0%
! TGAGATATTTGATCATAGAA+AGG + chr3_1:14324441-14324460 None:intergenic 25.0%
!! AAATCACTAAATTTTCTCCA+TGG - chr3_1:14324529-14324548 Msa0349930:intron 25.0%
TTTATGGGTAGTAAACAAAC+AGG + chr3_1:14321638-14321657 None:intergenic 30.0%
!! GTTCATATTCTTAGTTTTCG+TGG + chr3_1:14321839-14321858 None:intergenic 30.0%
!! TAGGTTTTAGTGGAAATCAT+GGG + chr3_1:14321869-14321888 None:intergenic 30.0%
!! TTAGGTTTTAGTGGAAATCA+TGG + chr3_1:14321870-14321889 None:intergenic 30.0%
AGGAACATAAAAAGAGCTTA+TGG + chr3_1:14322342-14322361 None:intergenic 30.0%
!! AAAGGTTAACTTTTTCTGAG+AGG + chr3_1:14322362-14322381 None:intergenic 30.0%
TCTTGGTATTTAGTTGAACT+GGG + chr3_1:14322436-14322455 None:intergenic 30.0%
AATAATCAATACCAAGGTCT+TGG + chr3_1:14322453-14322472 None:intergenic 30.0%
ATTCATTCAATAATAACGCC+AGG - chr3_1:14322470-14322489 Msa0349930:CDS 30.0%
TACTACGTAACACCATTTAT+GGG - chr3_1:14322515-14322534 Msa0349930:CDS 30.0%
CTTATGATTGATCAATGTGA+TGG - chr3_1:14322788-14322807 Msa0349930:intron 30.0%
! TTTCTTTTAAGCAAAGTCTC+GGG + chr3_1:14322942-14322961 None:intergenic 30.0%
! AAGGCCATTATCACAATTTT+GGG - chr3_1:14323025-14323044 Msa0349930:CDS 30.0%
ATGACCCAAAATTGTGATAA+TGG + chr3_1:14323032-14323051 None:intergenic 30.0%
ACAGATTAGAAAAGCTTATG+AGG - chr3_1:14323072-14323091 Msa0349930:CDS 30.0%
CAGATTAGAAAAGCTTATGA+GGG - chr3_1:14323073-14323092 Msa0349930:CDS 30.0%
AGATTAGAAAAGCTTATGAG+GGG - chr3_1:14323074-14323093 Msa0349930:CDS 30.0%
!! AAGTGAGTTGGTCAATTTAA+AGG + chr3_1:14323185-14323204 None:intergenic 30.0%
!! GTACTTTTTGCATAATCTTG+TGG - chr3_1:14323376-14323395 Msa0349930:intron 30.0%
ATAATCTTGTGGTTATTCAG+AGG - chr3_1:14323387-14323406 Msa0349930:intron 30.0%
TAATCTTGTGGTTATTCAGA+GGG - chr3_1:14323388-14323407 Msa0349930:intron 30.0%
! TTTTGATCAATGTAGCAATC+AGG - chr3_1:14323453-14323472 Msa0349930:intron 30.0%
GTCACCAAATAATGTTTATG+TGG - chr3_1:14323643-14323662 Msa0349930:intron 30.0%
CTGACCACATAAACATTATT+TGG + chr3_1:14323650-14323669 None:intergenic 30.0%
!! GATTCGACTGAGTTTTATAT+TGG + chr3_1:14323676-14323695 None:intergenic 30.0%
CGAATCGAATTATGACATAA+CGG - chr3_1:14323690-14323709 Msa0349930:intron 30.0%
GAATCGAATTATGACATAAC+GGG - chr3_1:14323691-14323710 Msa0349930:intron 30.0%
AGATGAGATCAATCCAAAAT+TGG - chr3_1:14323854-14323873 Msa0349930:intron 30.0%
AACAGATATCTCAACTATGT+TGG + chr3_1:14324071-14324090 None:intergenic 30.0%
! ATCAATTTGCCTTGTTCATA+CGG - chr3_1:14324264-14324283 Msa0349930:intron 30.0%
TTCATCTTTGTAGAAATTGC+TGG - chr3_1:14324320-14324339 Msa0349930:intron 30.0%
!! AAAAGTACTATGAGAAGGTT+AGG - chr3_1:14324406-14324425 Msa0349930:intron 30.0%
! TCTCAATGATTTTGTCATGT+TGG + chr3_1:14324570-14324589 None:intergenic 30.0%
TGTTTGGCTATGAACAACAA+TGG + chr3_1:14321341-14321360 None:intergenic 35.0%
! ATTCACCTTTGAAAGCAAGT+CGG + chr3_1:14321390-14321409 None:intergenic 35.0%
!! ATTCTTAGTTTTCGTGGATC+AGG + chr3_1:14321833-14321852 None:intergenic 35.0%
!! AGGTTTTAGTGGAAATCATG+GGG + chr3_1:14321868-14321887 None:intergenic 35.0%
!! TGCTAGTTTGTTTCTTATCG+TGG - chr3_1:14321929-14321948 Msa0349930:intron 35.0%
TGCTGCAAGTAAAGAACATA+AGG + chr3_1:14322118-14322137 None:intergenic 35.0%
TATGGTATCTCAAATCTGAG+AGG + chr3_1:14322324-14322343 None:intergenic 35.0%
GTCTTGGTATTTAGTTGAAC+TGG + chr3_1:14322437-14322456 None:intergenic 35.0%
TCAACTAAATACCAAGACCT+TGG - chr3_1:14322439-14322458 Msa0349930:intron 35.0%
ATTCAATAATAACGCCAGGT+AGG - chr3_1:14322474-14322493 Msa0349930:CDS 35.0%
!! CATAAATGGTGTTACGTAGT+AGG + chr3_1:14322516-14322535 None:intergenic 35.0%
CTACTACGTAACACCATTTA+TGG - chr3_1:14322514-14322533 Msa0349930:CDS 35.0%
ACTACGTAACACCATTTATG+GGG - chr3_1:14322516-14322535 Msa0349930:CDS 35.0%
TAACACCATTTATGGGGATA+AGG - chr3_1:14322522-14322541 Msa0349930:CDS 35.0%
AGCTATAGTGCTATGTTAGT+AGG + chr3_1:14322612-14322631 None:intergenic 35.0%
!! ATTTTTCAAACTCTGCAGGA+TGG - chr3_1:14322990-14323009 Msa0349930:CDS 35.0%
!! TTTTTCAAACTCTGCAGGAT+GGG - chr3_1:14322991-14323010 Msa0349930:CDS 35.0%
! CAAGGCCATTATCACAATTT+TGG - chr3_1:14323024-14323043 Msa0349930:CDS 35.0%
GTCATAGAAATGTTCATCAG+AGG - chr3_1:14323047-14323066 Msa0349930:CDS 35.0%
CATTGATCAAAACAGCATCT+CGG + chr3_1:14323445-14323464 None:intergenic 35.0%
ATCAATGTAGCAATCAGGAA+TGG - chr3_1:14323458-14323477 Msa0349930:intron 35.0%
TGGCAACAAAGATTATCATG+TGG - chr3_1:14323478-14323497 Msa0349930:intron 35.0%
! ACAATAAAGAATGACTTGCC+TGG + chr3_1:14323625-14323644 None:intergenic 35.0%
! CAGATCGCAATTTAAAACCA+TGG - chr3_1:14323742-14323761 Msa0349930:intron 35.0%
!! GAAAGTGTCAAGGAAAAGAA+AGG - chr3_1:14323903-14323922 Msa0349930:intron 35.0%
TCGTTAGGATTCTTACTACA+AGG - chr3_1:14323940-14323959 Msa0349930:intron 35.0%
GTTGGCACCTTATCTTTAAA+TGG + chr3_1:14324053-14324072 None:intergenic 35.0%
GGTTCAAGTCAGATGTAAAA+TGG + chr3_1:14324199-14324218 None:intergenic 35.0%
! GTTGTAAATCTAAAGCGCTA+GGG + chr3_1:14324220-14324239 None:intergenic 35.0%
ACAACGTCAAATTCATACCA+CGG - chr3_1:14324235-14324254 Msa0349930:intron 35.0%
TCTGGAAATCATCAGATGTT+TGG + chr3_1:14324347-14324366 None:intergenic 35.0%
!! CCTTCTCATAGTACTTTTTG+TGG + chr3_1:14324404-14324423 None:intergenic 35.0%
!! CCACAAAAAGTACTATGAGA+AGG - chr3_1:14324401-14324420 Msa0349930:intron 35.0%
CGCAATGCAATCAAGAAATT+TGG - chr3_1:14324649-14324668 Msa0349930:intron 35.0%
! AAATTTGGAACCGATGAAGA+TGG - chr3_1:14324664-14324683 Msa0349930:intron 35.0%
! AAGTTCATCCTCACTCTTTT+GGG - chr3_1:14324811-14324830 Msa0349930:five_prime_UTR 35.0%
CAAGCTAACTATCACTCCAA+TGG - chr3_1:14321312-14321331 Msa0349930:CDS 40.0%
TTGGCTATGAACAACAATGG+TGG + chr3_1:14321338-14321357 None:intergenic 40.0%
CATCTTGAACAGGAGATGTT+TGG + chr3_1:14321357-14321376 None:intergenic 40.0%
AACACACCCATAATCTAGCA+TGG + chr3_1:14321522-14321541 None:intergenic 40.0%
GAAAACACTGTTTCCTACGA+AGG - chr3_1:14321807-14321826 Msa0349930:intron 40.0%
!! GGTTTTAGTGGAAATCATGG+GGG + chr3_1:14321867-14321886 None:intergenic 40.0%
! GTTTCTTATCGTGGTTTTCG+TGG - chr3_1:14321938-14321957 Msa0349930:intron 40.0%
TTCGTGGATGTATTGTTTCG+TGG - chr3_1:14321954-14321973 Msa0349930:intron 40.0%
!!! CTAGGTTGTTTTTTCCTACC+TGG + chr3_1:14322491-14322510 None:intergenic 40.0%
!! GTTAGCCTTATCCCCATAAA+TGG + chr3_1:14322530-14322549 None:intergenic 40.0%
TATGGGGATAAGGCTAACTT+CGG - chr3_1:14322532-14322551 Msa0349930:CDS 40.0%
! TTTTCAAACTCTGCAGGATG+GGG - chr3_1:14322992-14323011 Msa0349930:CDS 40.0%
AGAAATCTCTGGTGACTTTG+AGG - chr3_1:14323132-14323151 Msa0349930:intron 40.0%
! CTTTAGCGTCTAAAGTGAGT+TGG + chr3_1:14323197-14323216 None:intergenic 40.0%
AGCAGACACATCTTCTTCAA+TGG + chr3_1:14323582-14323601 None:intergenic 40.0%
! ACTTGATTTTGCGCAGCTTT+TGG - chr3_1:14323800-14323819 Msa0349930:intron 40.0%
!! TTGGATTGGTGAGCTCATTT+AGG - chr3_1:14323823-14323842 Msa0349930:intron 40.0%
GTGAGCTCATTTAGGTATGA+GGG - chr3_1:14323831-14323850 Msa0349930:intron 40.0%
TCCAAAATTGGCACAAACTG+AGG - chr3_1:14323866-14323885 Msa0349930:intron 40.0%
GCAACAATGAAGAAGTCGTT+AGG - chr3_1:14323925-14323944 Msa0349930:intron 40.0%
AAGGAGCAAAACTCAACTTG+TGG - chr3_1:14323959-14323978 Msa0349930:intron 40.0%
AACCGTTATCGAGATGAACA+TGG - chr3_1:14323990-14324009 Msa0349930:intron 40.0%
TGCCATGTTCATCTCGATAA+CGG + chr3_1:14323995-14324014 None:intergenic 40.0%
ACATGGCATCTCCATTAGTA+AGG - chr3_1:14324007-14324026 Msa0349930:intron 40.0%
! CGTTGTAAATCTAAAGCGCT+AGG + chr3_1:14324221-14324240 None:intergenic 40.0%
TGTCATGTTGGACATCTATC+TGG + chr3_1:14324558-14324577 None:intergenic 40.0%
GCGCAAAACCTAGACATATT+TGG + chr3_1:14324632-14324651 None:intergenic 40.0%
! GAAGTTCATCCTCACTCTTT+TGG - chr3_1:14324810-14324829 Msa0349930:five_prime_UTR 40.0%
! AGTTCATCCTCACTCTTTTG+GGG - chr3_1:14324812-14324831 Msa0349930:five_prime_UTR 40.0%
TGAACAACAATGGTGGCCAT+TGG + chr3_1:14321331-14321350 None:intergenic 45.0%
ATCTCCTGTTCAAGATGCTG+AGG - chr3_1:14321360-14321379 Msa0349930:CDS 45.0%
TTTAGTGGAAATCATGGGGG+TGG + chr3_1:14321864-14321883 None:intergenic 45.0%
! GGTGTTACGTAGTAGGTACT+AGG + chr3_1:14322509-14322528 None:intergenic 45.0%
GAGTCTAGATCCTCAGTATC+CGG - chr3_1:14322830-14322849 Msa0349930:intron 45.0%
AATGTGACTTCCGGATACTG+AGG + chr3_1:14322843-14322862 None:intergenic 45.0%
TCGGAGTCTAATGTGACTTC+CGG + chr3_1:14322852-14322871 None:intergenic 45.0%
! ATGAGTCGGTGGGTTCATAT+AGG - chr3_1:14322880-14322899 Msa0349930:intron 45.0%
! TTATGAGGGGCTTTTCGAAG+AGG - chr3_1:14323087-14323106 Msa0349930:CDS 45.0%
TTATTCAGAGGGCTGTGTAC+CGG - chr3_1:14323399-14323418 Msa0349930:intron 45.0%
GCTATCAACTGAAGAGCTCT+TGG - chr3_1:14323520-14323539 Msa0349930:intron 45.0%
ACGCTTGTAGCGGTTATGAT+AGG + chr3_1:14323558-14323577 None:intergenic 45.0%
CTTCAATGGAACGCTTGTAG+CGG + chr3_1:14323568-14323587 None:intergenic 45.0%
! GATTTTGCGCAGCTTTTGGT+TGG - chr3_1:14323804-14323823 Msa0349930:intron 45.0%
GGTGAGCTCATTTAGGTATG+AGG - chr3_1:14323830-14323849 Msa0349930:intron 45.0%
! GCCTCAGTTTGTGCCAATTT+TGG + chr3_1:14323870-14323889 None:intergenic 45.0%
CTTTCGGCATGCAAAGATGT+CGG + chr3_1:14324101-14324120 None:intergenic 45.0%
TAGCTGTGTGCAATGTCTTC+TGG + chr3_1:14324365-14324384 None:intergenic 45.0%
GGACATCTATCTGGTAACCA+TGG + chr3_1:14324549-14324568 None:intergenic 45.0%
GATTGTGACAAGGGCTGAAA+AGG - chr3_1:14324699-14324718 Msa0349930:intron 45.0%
AAGGGCTGAAAAGGATCTGA+GGG - chr3_1:14324708-14324727 Msa0349930:intron 45.0%
TCTTGAAGATGCAGTGTCCA+AGG - chr3_1:14324768-14324787 Msa0349930:CDS 45.0%
CATGTTTCCCCAAAAGAGTG+AGG + chr3_1:14324822-14324841 None:intergenic 45.0%
!!! TTTTAAAATTTGATTTTTAT+GGG + chr3_1:14321653-14321672 None:intergenic 5.0%
!!! TTTTTAAAATTTGATTTTTA+TGG + chr3_1:14321654-14321673 None:intergenic 5.0%
!! TTAAATGTTATAAAAAAAAA+TGG + chr3_1:14322169-14322188 None:intergenic 5.0%
!!! ACAATTTTTTTTTTTTAATT+TGG - chr3_1:14324132-14324151 Msa0349930:intron 5.0%
!!! CAATTTTTTTTTTTTAATTT+GGG - chr3_1:14324133-14324152 Msa0349930:intron 5.0%
!!! AATTTTTTTTTTTTAATTTG+GGG - chr3_1:14324134-14324153 Msa0349930:intron 5.0%
AGAGCCTCAGCATCTTGAAC+AGG + chr3_1:14321367-14321386 None:intergenic 50.0%
! GCTCTCCGACTTGCTTTCAA+AGG - chr3_1:14321382-14321401 Msa0349930:CDS 50.0%
CTCCGACCAGTCTAATGAGT+CGG - chr3_1:14322866-14322885 Msa0349930:intron 50.0%
!! CACCGACTCATTAGACTGGT+CGG + chr3_1:14322871-14322890 None:intergenic 50.0%
GACCAGTCTAATGAGTCGGT+GGG - chr3_1:14322870-14322889 Msa0349930:intron 50.0%
!! AACCCACCGACTCATTAGAC+TGG + chr3_1:14322875-14322894 None:intergenic 50.0%
!! AGGATGGGGTGCTGATAACA+AGG - chr3_1:14323006-14323025 Msa0349930:CDS 50.0%
CGTCTCGAGTCAGAAATCTC+TGG - chr3_1:14323121-14323140 Msa0349930:intron 50.0%
!! TGCGCAGCTTTTGGTTGGAT+TGG - chr3_1:14323809-14323828 Msa0349930:intron 50.0%
CAAGGGCTGAAAAGGATCTG+AGG - chr3_1:14324707-14324726 Msa0349930:intron 50.0%
CAGTGTCCAAGGAAACCTCA+GGG - chr3_1:14324779-14324798 Msa0349930:exon 50.0%
AGTGTCCAAGGAAACCTCAG+GGG - chr3_1:14324780-14324799 Msa0349930:exon 50.0%
GAACTTCTTGTAGTCCCCTG+AGG + chr3_1:14324797-14324816 None:intergenic 50.0%
TTCGTGGATCAGGCCTTCGT+AGG + chr3_1:14321823-14321842 None:intergenic 55.0%
CGACCAGTCTAATGAGTCGG+TGG - chr3_1:14322869-14322888 Msa0349930:intron 55.0%
AAAACAGCATCTCGGTCCGC+AGG + chr3_1:14323437-14323456 None:intergenic 55.0%
CTGAAGAGCTCTTGGCAGTG+AGG - chr3_1:14323528-14323547 Msa0349930:intron 55.0%
GATGTGTCTGCTCACACCAC+CGG - chr3_1:14323590-14323609 Msa0349930:intron 55.0%
ACTTGCCTGGCGAAGATGAC+CGG + chr3_1:14323612-14323631 None:intergenic 55.0%
GGCAAATTGATGTCGTGCCG+TGG + chr3_1:14324255-14324274 None:intergenic 55.0%
GCGGCTCAGTCCATCTTCAT+CGG + chr3_1:14324677-14324696 None:intergenic 55.0%
TGAGCCGCGTGATTGTGACA+AGG - chr3_1:14324689-14324708 Msa0349930:intron 55.0%
GAGCCGCGTGATTGTGACAA+GGG - chr3_1:14324690-14324709 Msa0349930:intron 55.0%
CAGCCCTTGTCACAATCACG+CGG + chr3_1:14324696-14324715 None:intergenic 55.0%
GCAGTGTCCAAGGAAACCTC+AGG - chr3_1:14324778-14324797 Msa0349930:exon 55.0%
GTAGTCCCCTGAGGTTTCCT+TGG + chr3_1:14324788-14324807 None:intergenic 55.0%
TTCAGAGGGCTGTGTACCGG+TGG - chr3_1:14323402-14323421 Msa0349930:intron 60.0%
! GGCTGTGTACCGGTGGATGT+TGG - chr3_1:14323409-14323428 Msa0349930:intron 60.0%
CCGCAGGTTCCAACATCCAC+CGG + chr3_1:14323421-14323440 None:intergenic 60.0%
CCGGTGGATGTTGGAACCTG+CGG - chr3_1:14323418-14323437 Msa0349930:intron 60.0%
CACCACCGGTCATCTTCGCC+AGG - chr3_1:14323604-14323623 Msa0349930:intron 65.0%
TGCCTGGCGAAGATGACCGG+TGG + chr3_1:14323609-14323628 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 14321280 14324846 14321280 ID=Msa0349930;Name=Msa0349930
chr3_1 mRNA 14321280 14324846 14321280 ID=Msa0349930-mRNA-1;Parent=Msa0349930;Name=Msa0349930-mRNA-1;_AED=0.30;_eAED=0.30;_QI=51|0.8|0.66|1|1|1|6|0|327
chr3_1 exon 14321280 14321483 14321280 ID=Msa0349930-mRNA-1:exon:3534;Parent=Msa0349930-mRNA-1
chr3_1 exon 14321704 14321793 14321704 ID=Msa0349930-mRNA-1:exon:3533;Parent=Msa0349930-mRNA-1
chr3_1 exon 14322098 14322310 14322098 ID=Msa0349930-mRNA-1:exon:3532;Parent=Msa0349930-mRNA-1
chr3_1 exon 14322462 14322719 14322462 ID=Msa0349930-mRNA-1:exon:3531;Parent=Msa0349930-mRNA-1
chr3_1 exon 14322973 14323118 14322973 ID=Msa0349930-mRNA-1:exon:3530;Parent=Msa0349930-mRNA-1
chr3_1 exon 14324723 14324846 14324723 ID=Msa0349930-mRNA-1:exon:3529;Parent=Msa0349930-mRNA-1
chr3_1 five_prime_UTR 14324796 14324846 14324796 ID=Msa0349930-mRNA-1:five_prime_utr;Parent=Msa0349930-mRNA-1
chr3_1 CDS 14324723 14324795 14324723 ID=Msa0349930-mRNA-1:cds;Parent=Msa0349930-mRNA-1
chr3_1 CDS 14322973 14323118 14322973 ID=Msa0349930-mRNA-1:cds;Parent=Msa0349930-mRNA-1
chr3_1 CDS 14322462 14322719 14322462 ID=Msa0349930-mRNA-1:cds;Parent=Msa0349930-mRNA-1
chr3_1 CDS 14322098 14322310 14322098 ID=Msa0349930-mRNA-1:cds;Parent=Msa0349930-mRNA-1
chr3_1 CDS 14321704 14321793 14321704 ID=Msa0349930-mRNA-1:cds;Parent=Msa0349930-mRNA-1
chr3_1 CDS 14321280 14321483 14321280 ID=Msa0349930-mRNA-1:cds;Parent=Msa0349930-mRNA-1
Gene Sequence

>Msa0349930

ATGGCCACCATTGTTGTTCATAGCCAAACATCTCCTGTTCAAGATGCTGAGGCTCTCCGACTTGCTTTCAAAGGATGGGGTGCTGATAACAAGGCCATTATCACAATTTTGGGTCATAGAAATGTTCATCAGAGGCAACAGATTAGAAAAGCTTATGAGGGGCTTTTCGAAGAGGATCTCATCAAACGTCTCGAGTCAGAAATCTCTGGTGACTTTGAGAGGGCTGTGTACCGGTGGATGTTGGAACCTGCGGACCGAGATGCTGTTTTGATCAATGTAGCAATCAGGAATGGCAACAAAGATTATCATGTGGTTGCTGAAATTGCTTCTGTGCTATCAACTGAAGAGCTCTTGGCAGTGAGGTGCGCCTATCATAACCGCTACAAGCGTTCCATTGAAGAAGATGTGTCTGCTCACACCACCGGTCATCTTCGCCAGGCAAGTCATTCTTTATTGTCACCAAATAATGTTTATGTGCTTTTGGTTGGATTGGTGAGCTCATTTAGGTATGAGGGAGATGAGATCAATCCAAAATTGGCACAAACTGAGGCTAATATTATTCATGAAAGTGTCAAGGAAAAGAAAGGCAACAATGAAGAAGTCGTTAGGATTCTTACTACAAGGAGCAAAACTCAACTTGTGGCAACTTTCAACCGTTATCGAGATGAACATGGCATCTCCATTAGTAAGAAATTGCTGGACCAAACATCTGATGATTTCCAGAAGACATTGCACACAGCTATTCGTTGCATCAATGACCACAAAAAGTACTATGAGAAGGTTTTGCGCAATGCAATCAAGAAATTTGGAACCGATGAAGATGGACTGAGCCGCGTGATTGTGACAAGGGCTGAAAAGGATCTGAGGGACATCAAAGAGCTGTACTACAAGAGAAACAGTGTTCATCTTGAAGATGCAGTGTCCAAGGAAACCTCAGGGGACTACAAGAAGTTCATCCTCACTCTTTTGGGGAAACATGATTAA

Protein sequence

>Msa0349930

MATIVVHSQTSPVQDAEALRLAFKGWGADNKAIITILGHRNVHQRQQIRKAYEGLFEEDLIKRLESEISGDFERAVYRWMLEPADRDAVLINVAIRNGNKDYHVVAEIASVLSTEELLAVRCAYHNRYKRSIEEDVSAHTTGHLRQASHSLLSPNNVYVLLVGLVSSFRYEGDEINPKLAQTEANIIHESVKEKKGNNEEVVRILTTRSKTQLVATFNRYRDEHGISISKKLLDQTSDDFQKTLHTAIRCINDHKKYYEKVLRNAIKKFGTDEDGLSRVIVTRAEKDLRDIKELYYKRNSVHLEDAVSKETSGDYKKFILTLLGKHD*