AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0233210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0233210 MtrunA17_Chr8g0361451 80.000 200 34 1 45 238 1 200 1.12e-114 327
Msa0233210 MtrunA17_Chr2g0318961 79.000 200 36 1 45 238 1 200 3.75e-112 320
Msa0233210 MtrunA17_Chr4g0048841 78.283 198 37 1 50 241 41 238 1.24e-109 315
Msa0233210 MtrunA17_Chr2g0280641 73.399 203 48 1 45 241 1 203 8.98e-104 299
Msa0233210 MtrunA17_Chr5g0429671 65.327 199 62 2 47 238 4 202 2.00e-90 265
Msa0233210 MtrunA17_Chr4g0034601 64.467 197 63 2 48 237 52 248 3.78e-84 251
Msa0233210 MtrunA17_Chr5g0403681 62.000 200 69 2 48 240 53 252 6.59e-82 245
Msa0233210 MtrunA17_Chr4g0048831 83.333 120 16 1 122 241 1 116 3.40e-67 203
Msa0233210 MtrunA17_Chr8g0361461 76.923 117 27 0 122 238 1 117 4.89e-61 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0233210 AT4G27270.1 78.109 201 38 1 45 239 1 201 3.62e-112 320
Msa0233210 AT5G54500.1 77.723 202 39 1 45 240 1 202 1.50e-111 319
Msa0233210 AT4G27270.3 76.842 190 38 1 56 239 1 190 1.17e-103 298
Msa0233210 AT4G27270.2 76.842 190 38 1 56 239 1 190 1.17e-103 298
Msa0233210 AT5G58800.1 63.819 199 65 2 47 238 4 202 2.43e-87 258
Msa0233210 AT5G58800.2 63.819 199 65 2 47 238 4 202 2.43e-87 258
Msa0233210 AT5G54500.2 75.309 162 34 1 45 200 1 162 2.49e-83 249
Msa0233210 AT4G36750.1 62.437 197 67 2 48 237 74 270 9.12e-83 248
Msa0233210 AT4G27270.4 79.333 150 25 1 96 239 1 150 4.68e-82 242

Find 55 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTCATTTGCTGAAATAAT+TGG 0.177953 2_2:+5520425 None:intergenic
ACCTCTTCTGGCAATATTTC+AGG 0.186131 2_2:+5520485 None:intergenic
TACTCAATTCAAAGCATTTA+TGG 0.233806 2_2:-5520348 Msa0233210:CDS
AGAAACCAAAAGGGCGTTCT+TGG 0.308627 2_2:+5520898 None:intergenic
ATAATTGGAACATCACTCTT+TGG 0.328363 2_2:+5520440 None:intergenic
GTGCATTATATAAATGGAAT+TGG 0.330285 2_2:-5520970 None:intergenic
ACTCACCAAGAACGCCCTTT+TGG 0.367633 2_2:-5520903 Msa0233210:CDS
TTTAGCTACTATTCTATGTA+TGG 0.386282 2_2:-5520699 Msa0233210:intron
CATCAAGGGAAATACTTTGC+GGG 0.388451 2_2:-5519520 Msa0233210:CDS
TGGTGCACACAGAAACTTGC+AGG 0.402973 2_2:-5520308 Msa0233210:CDS
ATCTTCCCAAGAACCTCTTC+TGG 0.413268 2_2:+5520473 None:intergenic
CAAGTTTCTGTGTGCACCAT+AGG 0.415808 2_2:+5520312 None:intergenic
AAAGCATTTATGGATACAAC+TGG 0.420143 2_2:-5520338 Msa0233210:CDS
TCCAACAAGATTTGGAATGA+TGG 0.421484 2_2:-5520372 Msa0233210:intron
TATTGCCAGAAGAGGTTCTT+GGG 0.434381 2_2:-5520478 Msa0233210:CDS
GTGCCCGTTGGATACACATT+TGG 0.442396 2_2:-5519655 Msa0233210:CDS
CTGTCTCTATAGAAACCAAA+AGG 0.458141 2_2:+5520888 None:intergenic
TATTCTATGTATGGACATGT+TGG 0.462480 2_2:-5520690 Msa0233210:CDS
AATGGAGTTGAATCCATAGA+AGG 0.462725 2_2:-5520645 Msa0233210:CDS
TATGGTGCTGGAACTTATGC+AGG 0.483004 2_2:-5519589 Msa0233210:CDS
ATATTGCCAGAAGAGGTTCT+TGG 0.489085 2_2:-5520479 Msa0233210:CDS
GCATAAGTTCCAGCACCATA+TGG 0.494566 2_2:+5519592 None:intergenic
TCATCAAGGGAAATACTTTG+CGG 0.497889 2_2:-5519521 Msa0233210:CDS
ACAGCCCACTGGATTAGAAC+TGG 0.499934 2_2:-5519554 Msa0233210:CDS
AATGAGCTTCTTGAGGCTGA+TGG 0.504019 2_2:-5520410 Msa0233210:CDS
GTGAAAGGTGGCTCACCATA+TGG 0.504157 2_2:-5519607 Msa0233210:CDS
GCACCAAATGTGTATCCAAC+GGG 0.505966 2_2:+5519652 None:intergenic
GTTGGATACACATTTGGTGC+TGG 0.509879 2_2:-5519649 Msa0233210:CDS
ATTGGAACATCACTCTTTGG+AGG 0.524679 2_2:+5520443 None:intergenic
ATTCTATGTATGGACATGTT+GGG 0.527530 2_2:-5520689 Msa0233210:CDS
GTGCTGTAAAAGATGCCAGC+AGG 0.530472 2_2:+5520281 None:intergenic
CTTCAAGTTACTAGCAGCAA+TGG 0.533135 2_2:-5520844 Msa0233210:CDS
GCTGGAACTTATGCAGGGGA+TGG 0.539914 2_2:-5519583 Msa0233210:CDS
GGTGGCTCACCATATGGTGC+TGG 0.541107 2_2:-5519601 Msa0233210:CDS
GAATTGCAAAGAAGCTCAAA+GGG 0.547992 2_2:-5519498 Msa0233210:CDS
AAACTTGCAGGAAAGCCTGC+TGG 0.549934 2_2:-5520296 Msa0233210:CDS
TGTAGAAGCAAAACTCTGGC+AGG 0.555434 2_2:-5520622 Msa0233210:intron
TTCAGCAAATGAGCTTCTTG+AGG 0.559049 2_2:-5520417 Msa0233210:CDS
TGGATACAACTGGAGACCTA+TGG 0.560259 2_2:-5520328 Msa0233210:CDS
GGAATTGCAAAGAAGCTCAA+AGG 0.567048 2_2:-5519499 Msa0233210:CDS
GATGGCTCAAGACAGCCCAC+TGG 0.577022 2_2:-5519565 Msa0233210:CDS
TGGAATGTTTGAGATAGAAA+AGG 0.585194 2_2:-5519629 Msa0233210:CDS
GCCTGAAATATTGCCAGAAG+AGG 0.587723 2_2:-5520486 Msa0233210:CDS
TACAGCACTGCTTGTCAAGG+AGG 0.588851 2_2:-5520266 Msa0233210:CDS
AGCACCAAATGTGTATCCAA+CGG 0.594733 2_2:+5519651 None:intergenic
TTGAGCCAGTTCTAATCCAG+TGG 0.603213 2_2:+5519549 None:intergenic
AGCACTGCTTGTCAAGGAGG+TGG 0.606846 2_2:-5520263 Msa0233210:CDS
TTTGAGATAGAAAAGGTGAA+AGG 0.612381 2_2:-5519622 Msa0233210:CDS
AAGGTGTAGAAGCAAAACTC+TGG 0.618036 2_2:-5520626 Msa0233210:CDS
TGTCTCTATAGAAACCAAAA+GGG 0.625559 2_2:+5520889 None:intergenic
ATGGTGCTGGAACTTATGCA+GGG 0.634036 2_2:-5519588 Msa0233210:CDS
ATTACACAACTTGTTCACCA+TGG 0.638391 2_2:-5519688 Msa0233210:CDS
TGAGCCAGTTCTAATCCAGT+GGG 0.641145 2_2:+5519550 None:intergenic
GAGATAGAAAAGGTGAAAGG+TGG 0.645866 2_2:-5519619 Msa0233210:CDS
TGGTGCTGGAACTTATGCAG+GGG 0.770860 2_2:-5519587 Msa0233210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGAATTCAATAATAAT+TGG - chr2_2:5520283-5520302 Msa0233210:CDS 10.0%
!!! TTTTAGAATTCAATAATAAT+TGG - chr2_2:5520283-5520302 Msa0233210:CDS 10.0%
!!! TATTGAATTCTAAAAACATT+TGG + chr2_2:5520278-5520297 None:intergenic 15.0%
!!! TAAATTAACTATTTTCGATT+TGG - chr2_2:5520469-5520488 Msa0233210:CDS 15.0%
!!! TATTGAATTCTAAAAACATT+TGG + chr2_2:5520278-5520297 None:intergenic 15.0%
!!! TAAATTAACTATTTTCGATT+TGG - chr2_2:5520469-5520488 Msa0233210:CDS 15.0%
!! ACATTAAATATAACTTCTGA+AGG + chr2_2:5519699-5519718 None:intergenic 20.0%
!! TTTCAAAAAATAAAGTGTGA+TGG + chr2_2:5520247-5520266 None:intergenic 20.0%
!! CATAAAATTACTAACAAAAG+AGG + chr2_2:5520405-5520424 None:intergenic 20.0%
!! ACATTAAATATAACTTCTGA+AGG + chr2_2:5519699-5519718 None:intergenic 20.0%
!! TTTCAAAAAATAAAGTGTGA+TGG + chr2_2:5520247-5520266 None:intergenic 20.0%
!! CATAAAATTACTAACAAAAG+AGG + chr2_2:5520405-5520424 None:intergenic 20.0%
!! TTAAATATAACTTCTGAAGG+AGG + chr2_2:5519696-5519715 None:intergenic 25.0%
! TTTAGCTACTATTCTATGTA+TGG - chr2_2:5519747-5519766 Msa0233210:intron 25.0%
!! TACTCAATTCAAAGCATTTA+TGG - chr2_2:5520098-5520117 Msa0233210:intron 25.0%
! ACCTCAAATCAGAAAATAAA+TGG + chr2_2:5520730-5520749 None:intergenic 25.0%
!! TTAAATATAACTTCTGAAGG+AGG + chr2_2:5519696-5519715 None:intergenic 25.0%
! TTTAGCTACTATTCTATGTA+TGG - chr2_2:5519747-5519766 Msa0233210:intron 25.0%
!! TACTCAATTCAAAGCATTTA+TGG - chr2_2:5520098-5520117 Msa0233210:intron 25.0%
! ACCTCAAATCAGAAAATAAA+TGG + chr2_2:5520730-5520749 None:intergenic 25.0%
TGTCTCTATAGAAACCAAAA+GGG + chr2_2:5519560-5519579 None:intergenic 30.0%
TATTCTATGTATGGACATGT+TGG - chr2_2:5519756-5519775 Msa0233210:intron 30.0%
ATTCTATGTATGGACATGTT+GGG - chr2_2:5519757-5519776 Msa0233210:intron 30.0%
ATAATTGGAACATCACTCTT+TGG + chr2_2:5520009-5520028 None:intergenic 30.0%
! AGCTCATTTGCTGAAATAAT+TGG + chr2_2:5520024-5520043 None:intergenic 30.0%
!!! TTTGGTTTTCCAACAAGATT+TGG - chr2_2:5520066-5520085 Msa0233210:intron 30.0%
! AAAGCATTTATGGATACAAC+TGG - chr2_2:5520108-5520127 Msa0233210:intron 30.0%
CATTCATTTCTAATTGATGC+GGG + chr2_2:5520314-5520333 None:intergenic 30.0%
CCATTCATTTCTAATTGATG+CGG + chr2_2:5520315-5520334 None:intergenic 30.0%
! GATACATTTATGGACTATAG+TGG + chr2_2:5520358-5520377 None:intergenic 30.0%
TTGCAGTTACGATACATTTA+TGG + chr2_2:5520368-5520387 None:intergenic 30.0%
!! TACTAACAAAAGAGGTACTA+GGG + chr2_2:5520397-5520416 None:intergenic 30.0%
!! TTACTAACAAAAGAGGTACT+AGG + chr2_2:5520398-5520417 None:intergenic 30.0%
!! GCCATTTATTTTCTGATTTG+AGG - chr2_2:5520726-5520745 Msa0233210:intron 30.0%
! TGGAATGTTTGAGATAGAAA+AGG - chr2_2:5520817-5520836 Msa0233210:intron 30.0%
! TTTGAGATAGAAAAGGTGAA+AGG - chr2_2:5520824-5520843 Msa0233210:intron 30.0%
TGTCTCTATAGAAACCAAAA+GGG + chr2_2:5519560-5519579 None:intergenic 30.0%
TATTCTATGTATGGACATGT+TGG - chr2_2:5519756-5519775 Msa0233210:intron 30.0%
ATTCTATGTATGGACATGTT+GGG - chr2_2:5519757-5519776 Msa0233210:intron 30.0%
ATAATTGGAACATCACTCTT+TGG + chr2_2:5520009-5520028 None:intergenic 30.0%
! AGCTCATTTGCTGAAATAAT+TGG + chr2_2:5520024-5520043 None:intergenic 30.0%
!!! TTTGGTTTTCCAACAAGATT+TGG - chr2_2:5520066-5520085 Msa0233210:intron 30.0%
! AAAGCATTTATGGATACAAC+TGG - chr2_2:5520108-5520127 Msa0233210:intron 30.0%
CATTCATTTCTAATTGATGC+GGG + chr2_2:5520314-5520333 None:intergenic 30.0%
CCATTCATTTCTAATTGATG+CGG + chr2_2:5520315-5520334 None:intergenic 30.0%
! GATACATTTATGGACTATAG+TGG + chr2_2:5520358-5520377 None:intergenic 30.0%
TTGCAGTTACGATACATTTA+TGG + chr2_2:5520368-5520387 None:intergenic 30.0%
!! TACTAACAAAAGAGGTACTA+GGG + chr2_2:5520397-5520416 None:intergenic 30.0%
!! TTACTAACAAAAGAGGTACT+AGG + chr2_2:5520398-5520417 None:intergenic 30.0%
!! GCCATTTATTTTCTGATTTG+AGG - chr2_2:5520726-5520745 Msa0233210:intron 30.0%
! TGGAATGTTTGAGATAGAAA+AGG - chr2_2:5520817-5520836 Msa0233210:intron 30.0%
! TTTGAGATAGAAAAGGTGAA+AGG - chr2_2:5520824-5520843 Msa0233210:intron 30.0%
CTGTCTCTATAGAAACCAAA+AGG + chr2_2:5519561-5519580 None:intergenic 35.0%
AGATTCGTGAAAATAGAGAG+AGG + chr2_2:5519662-5519681 None:intergenic 35.0%
CTAGCTGAAGAGATCAAAAA+TGG - chr2_2:5519783-5519802 Msa0233210:intron 35.0%
AATGGAGTTGAATCCATAGA+AGG - chr2_2:5519801-5519820 Msa0233210:intron 35.0%
! TTTTGCTTCTACACCTTCTA+TGG + chr2_2:5519817-5519836 None:intergenic 35.0%
!! TGTTTGAGAAGTGTTCAGTT+TGG + chr2_2:5519868-5519887 None:intergenic 35.0%
! TCCAACAAGATTTGGAATGA+TGG - chr2_2:5520074-5520093 Msa0233210:intron 35.0%
ACAGAAGAATGAGAAACTCA+CGG + chr2_2:5520222-5520241 None:intergenic 35.0%
CCGCATCAATTAGAAATGAA+TGG - chr2_2:5520312-5520331 Msa0233210:CDS 35.0%
GTGTTCAAAAGTTTACTCGT+TGG + chr2_2:5520439-5520458 None:intergenic 35.0%
TAACAGCGTCTCATACATTT+AGG - chr2_2:5520501-5520520 Msa0233210:intron 35.0%
AACAGCGTCTCATACATTTA+GGG - chr2_2:5520502-5520521 Msa0233210:intron 35.0%
! CTAAGGTTTTTCTTACACTC+TGG - chr2_2:5520632-5520651 Msa0233210:CDS 35.0%
! ATTACACAACTTGTTCACCA+TGG - chr2_2:5520758-5520777 Msa0233210:intron 35.0%
TCATCAAGGGAAATACTTTG+CGG - chr2_2:5520925-5520944 Msa0233210:CDS 35.0%
GAATTGCAAAGAAGCTCAAA+GGG - chr2_2:5520948-5520967 Msa0233210:CDS 35.0%
CTGTCTCTATAGAAACCAAA+AGG + chr2_2:5519561-5519580 None:intergenic 35.0%
AGATTCGTGAAAATAGAGAG+AGG + chr2_2:5519662-5519681 None:intergenic 35.0%
CTAGCTGAAGAGATCAAAAA+TGG - chr2_2:5519783-5519802 Msa0233210:intron 35.0%
AATGGAGTTGAATCCATAGA+AGG - chr2_2:5519801-5519820 Msa0233210:intron 35.0%
! TTTTGCTTCTACACCTTCTA+TGG + chr2_2:5519817-5519836 None:intergenic 35.0%
!! TGTTTGAGAAGTGTTCAGTT+TGG + chr2_2:5519868-5519887 None:intergenic 35.0%
! TCCAACAAGATTTGGAATGA+TGG - chr2_2:5520074-5520093 Msa0233210:intron 35.0%
ACAGAAGAATGAGAAACTCA+CGG + chr2_2:5520222-5520241 None:intergenic 35.0%
CCGCATCAATTAGAAATGAA+TGG - chr2_2:5520312-5520331 Msa0233210:CDS 35.0%
GTGTTCAAAAGTTTACTCGT+TGG + chr2_2:5520439-5520458 None:intergenic 35.0%
TAACAGCGTCTCATACATTT+AGG - chr2_2:5520501-5520520 Msa0233210:intron 35.0%
AACAGCGTCTCATACATTTA+GGG - chr2_2:5520502-5520521 Msa0233210:intron 35.0%
! CTAAGGTTTTTCTTACACTC+TGG - chr2_2:5520632-5520651 Msa0233210:CDS 35.0%
! ATTACACAACTTGTTCACCA+TGG - chr2_2:5520758-5520777 Msa0233210:intron 35.0%
TCATCAAGGGAAATACTTTG+CGG - chr2_2:5520925-5520944 Msa0233210:CDS 35.0%
GAATTGCAAAGAAGCTCAAA+GGG - chr2_2:5520948-5520967 Msa0233210:CDS 35.0%
! CTTCAAGTTACTAGCAGCAA+TGG - chr2_2:5519602-5519621 Msa0233210:CDS 40.0%
AAGGTGTAGAAGCAAAACTC+TGG - chr2_2:5519820-5519839 Msa0233210:intron 40.0%
!! GAGAAGTGTTCAGTTTGGTT+TGG + chr2_2:5519863-5519882 None:intergenic 40.0%
ACCTCTTCTGGCAATATTTC+AGG + chr2_2:5519964-5519983 None:intergenic 40.0%
ATATTGCCAGAAGAGGTTCT+TGG - chr2_2:5519967-5519986 Msa0233210:intron 40.0%
TATTGCCAGAAGAGGTTCTT+GGG - chr2_2:5519968-5519987 Msa0233210:intron 40.0%
ATTGGAACATCACTCTTTGG+AGG + chr2_2:5520006-5520025 None:intergenic 40.0%
TTCAGCAAATGAGCTTCTTG+AGG - chr2_2:5520029-5520048 Msa0233210:intron 40.0%
!!! GAGGCTGATGGTTTTTTGTT+TGG - chr2_2:5520048-5520067 Msa0233210:intron 40.0%
GCCATCATTCCAAATCTTGT+TGG + chr2_2:5520078-5520097 None:intergenic 40.0%
! TTTTACAGCACTGCTTGTCA+AGG - chr2_2:5520177-5520196 Msa0233210:intron 40.0%
CTGAGAAATTGCTACTGCTA+AGG - chr2_2:5520615-5520634 Msa0233210:intron 40.0%
AGCACCAAATGTGTATCCAA+CGG + chr2_2:5520798-5520817 None:intergenic 40.0%
GAGATAGAAAAGGTGAAAGG+TGG - chr2_2:5520827-5520846 Msa0233210:CDS 40.0%
! TGGCTCAAGCTTTTCATCAA+GGG - chr2_2:5520912-5520931 Msa0233210:CDS 40.0%
CATCAAGGGAAATACTTTGC+GGG - chr2_2:5520926-5520945 Msa0233210:CDS 40.0%
GGAATTGCAAAGAAGCTCAA+AGG - chr2_2:5520947-5520966 Msa0233210:CDS 40.0%
! CTTCAAGTTACTAGCAGCAA+TGG - chr2_2:5519602-5519621 Msa0233210:CDS 40.0%
AAGGTGTAGAAGCAAAACTC+TGG - chr2_2:5519820-5519839 Msa0233210:intron 40.0%
!! GAGAAGTGTTCAGTTTGGTT+TGG + chr2_2:5519863-5519882 None:intergenic 40.0%
ACCTCTTCTGGCAATATTTC+AGG + chr2_2:5519964-5519983 None:intergenic 40.0%
ATATTGCCAGAAGAGGTTCT+TGG - chr2_2:5519967-5519986 Msa0233210:intron 40.0%
TATTGCCAGAAGAGGTTCTT+GGG - chr2_2:5519968-5519987 Msa0233210:intron 40.0%
ATTGGAACATCACTCTTTGG+AGG + chr2_2:5520006-5520025 None:intergenic 40.0%
TTCAGCAAATGAGCTTCTTG+AGG - chr2_2:5520029-5520048 Msa0233210:intron 40.0%
!!! GAGGCTGATGGTTTTTTGTT+TGG - chr2_2:5520048-5520067 Msa0233210:intron 40.0%
GCCATCATTCCAAATCTTGT+TGG + chr2_2:5520078-5520097 None:intergenic 40.0%
! TTTTACAGCACTGCTTGTCA+AGG - chr2_2:5520177-5520196 Msa0233210:intron 40.0%
CTGAGAAATTGCTACTGCTA+AGG - chr2_2:5520615-5520634 Msa0233210:intron 40.0%
AGCACCAAATGTGTATCCAA+CGG + chr2_2:5520798-5520817 None:intergenic 40.0%
GAGATAGAAAAGGTGAAAGG+TGG - chr2_2:5520827-5520846 Msa0233210:CDS 40.0%
! TGGCTCAAGCTTTTCATCAA+GGG - chr2_2:5520912-5520931 Msa0233210:CDS 40.0%
CATCAAGGGAAATACTTTGC+GGG - chr2_2:5520926-5520945 Msa0233210:CDS 40.0%
GGAATTGCAAAGAAGCTCAA+AGG - chr2_2:5520947-5520966 Msa0233210:CDS 40.0%
!! AGAAACCAAAAGGGCGTTCT+TGG + chr2_2:5519551-5519570 None:intergenic 45.0%
TGTAGAAGCAAAACTCTGGC+AGG - chr2_2:5519824-5519843 Msa0233210:intron 45.0%
GCCTGAAATATTGCCAGAAG+AGG - chr2_2:5519960-5519979 Msa0233210:intron 45.0%
ATCTTCCCAAGAACCTCTTC+TGG + chr2_2:5519976-5519995 None:intergenic 45.0%
AATGAGCTTCTTGAGGCTGA+TGG - chr2_2:5520036-5520055 Msa0233210:intron 45.0%
TGGATACAACTGGAGACCTA+TGG - chr2_2:5520118-5520137 Msa0233210:intron 45.0%
CAAGTTTCTGTGTGCACCAT+AGG + chr2_2:5520137-5520156 None:intergenic 45.0%
ATAGCACTTGCGGAAAGTCT+GGG + chr2_2:5520662-5520681 None:intergenic 45.0%
CATGACTCTGATAGCACTTG+CGG + chr2_2:5520672-5520691 None:intergenic 45.0%
CGGGCACAAAAATCATTCCA+TGG + chr2_2:5520778-5520797 None:intergenic 45.0%
! GGAATGATTTTTGTGCCCGT+TGG - chr2_2:5520779-5520798 Msa0233210:intron 45.0%
GCACCAAATGTGTATCCAAC+GGG + chr2_2:5520797-5520816 None:intergenic 45.0%
!! GTTGGATACACATTTGGTGC+TGG - chr2_2:5520797-5520816 Msa0233210:intron 45.0%
GCATAAGTTCCAGCACCATA+TGG + chr2_2:5520857-5520876 None:intergenic 45.0%
! TATGGTGCTGGAACTTATGC+AGG - chr2_2:5520857-5520876 Msa0233210:CDS 45.0%
! ATGGTGCTGGAACTTATGCA+GGG - chr2_2:5520858-5520877 Msa0233210:CDS 45.0%
! TGAGCCAGTTCTAATCCAGT+GGG + chr2_2:5520899-5520918 None:intergenic 45.0%
! TTGAGCCAGTTCTAATCCAG+TGG + chr2_2:5520900-5520919 None:intergenic 45.0%
! CTGGCTCAAGCTTTTCATCA+AGG - chr2_2:5520911-5520930 Msa0233210:CDS 45.0%
!! AGAAACCAAAAGGGCGTTCT+TGG + chr2_2:5519551-5519570 None:intergenic 45.0%
TGTAGAAGCAAAACTCTGGC+AGG - chr2_2:5519824-5519843 Msa0233210:intron 45.0%
GCCTGAAATATTGCCAGAAG+AGG - chr2_2:5519960-5519979 Msa0233210:intron 45.0%
ATCTTCCCAAGAACCTCTTC+TGG + chr2_2:5519976-5519995 None:intergenic 45.0%
AATGAGCTTCTTGAGGCTGA+TGG - chr2_2:5520036-5520055 Msa0233210:intron 45.0%
TGGATACAACTGGAGACCTA+TGG - chr2_2:5520118-5520137 Msa0233210:intron 45.0%
CAAGTTTCTGTGTGCACCAT+AGG + chr2_2:5520137-5520156 None:intergenic 45.0%
ATAGCACTTGCGGAAAGTCT+GGG + chr2_2:5520662-5520681 None:intergenic 45.0%
CATGACTCTGATAGCACTTG+CGG + chr2_2:5520672-5520691 None:intergenic 45.0%
CGGGCACAAAAATCATTCCA+TGG + chr2_2:5520778-5520797 None:intergenic 45.0%
! GGAATGATTTTTGTGCCCGT+TGG - chr2_2:5520779-5520798 Msa0233210:intron 45.0%
GCACCAAATGTGTATCCAAC+GGG + chr2_2:5520797-5520816 None:intergenic 45.0%
!! GTTGGATACACATTTGGTGC+TGG - chr2_2:5520797-5520816 Msa0233210:intron 45.0%
GCATAAGTTCCAGCACCATA+TGG + chr2_2:5520857-5520876 None:intergenic 45.0%
! TATGGTGCTGGAACTTATGC+AGG - chr2_2:5520857-5520876 Msa0233210:CDS 45.0%
! ATGGTGCTGGAACTTATGCA+GGG - chr2_2:5520858-5520877 Msa0233210:CDS 45.0%
! TGAGCCAGTTCTAATCCAGT+GGG + chr2_2:5520899-5520918 None:intergenic 45.0%
! TTGAGCCAGTTCTAATCCAG+TGG + chr2_2:5520900-5520919 None:intergenic 45.0%
! CTGGCTCAAGCTTTTCATCA+AGG - chr2_2:5520911-5520930 Msa0233210:CDS 45.0%
!! ATTTATTTATATATATGTAT+AGG - chr2_2:5519936-5519955 Msa0233210:intron 5.0%
!! ATTTATTTATATATATGTAT+AGG - chr2_2:5519936-5519955 Msa0233210:intron 5.0%
! ACTCACCAAGAACGCCCTTT+TGG - chr2_2:5519543-5519562 Msa0233210:CDS 50.0%
TGGTGCACACAGAAACTTGC+AGG - chr2_2:5520138-5520157 Msa0233210:intron 50.0%
AAACTTGCAGGAAAGCCTGC+TGG - chr2_2:5520150-5520169 Msa0233210:intron 50.0%
GTGCTGTAAAAGATGCCAGC+AGG + chr2_2:5520168-5520187 None:intergenic 50.0%
TACAGCACTGCTTGTCAAGG+AGG - chr2_2:5520180-5520199 Msa0233210:intron 50.0%
GATAGCACTTGCGGAAAGTC+TGG + chr2_2:5520663-5520682 None:intergenic 50.0%
CGCAAGTGCTATCAGAGTCA+TGG - chr2_2:5520670-5520689 Msa0233210:CDS 50.0%
GTGCCCGTTGGATACACATT+TGG - chr2_2:5520791-5520810 Msa0233210:intron 50.0%
GTGAAAGGTGGCTCACCATA+TGG - chr2_2:5520839-5520858 Msa0233210:CDS 50.0%
! TGGTGCTGGAACTTATGCAG+GGG - chr2_2:5520859-5520878 Msa0233210:CDS 50.0%
! ACAGCCCACTGGATTAGAAC+TGG - chr2_2:5520892-5520911 Msa0233210:CDS 50.0%
! ACTCACCAAGAACGCCCTTT+TGG - chr2_2:5519543-5519562 Msa0233210:CDS 50.0%
TGGTGCACACAGAAACTTGC+AGG - chr2_2:5520138-5520157 Msa0233210:intron 50.0%
AAACTTGCAGGAAAGCCTGC+TGG - chr2_2:5520150-5520169 Msa0233210:intron 50.0%
GTGCTGTAAAAGATGCCAGC+AGG + chr2_2:5520168-5520187 None:intergenic 50.0%
TACAGCACTGCTTGTCAAGG+AGG - chr2_2:5520180-5520199 Msa0233210:intron 50.0%
GATAGCACTTGCGGAAAGTC+TGG + chr2_2:5520663-5520682 None:intergenic 50.0%
CGCAAGTGCTATCAGAGTCA+TGG - chr2_2:5520670-5520689 Msa0233210:CDS 50.0%
GTGCCCGTTGGATACACATT+TGG - chr2_2:5520791-5520810 Msa0233210:intron 50.0%
GTGAAAGGTGGCTCACCATA+TGG - chr2_2:5520839-5520858 Msa0233210:CDS 50.0%
! TGGTGCTGGAACTTATGCAG+GGG - chr2_2:5520859-5520878 Msa0233210:CDS 50.0%
! ACAGCCCACTGGATTAGAAC+TGG - chr2_2:5520892-5520911 Msa0233210:CDS 50.0%
AGCACTGCTTGTCAAGGAGG+TGG - chr2_2:5520183-5520202 Msa0233210:intron 55.0%
GCTGGAACTTATGCAGGGGA+TGG - chr2_2:5520863-5520882 Msa0233210:CDS 55.0%
AGCACTGCTTGTCAAGGAGG+TGG - chr2_2:5520183-5520202 Msa0233210:intron 55.0%
GCTGGAACTTATGCAGGGGA+TGG - chr2_2:5520863-5520882 Msa0233210:CDS 55.0%
GGTGGCTCACCATATGGTGC+TGG - chr2_2:5520845-5520864 Msa0233210:CDS 60.0%
GATGGCTCAAGACAGCCCAC+TGG - chr2_2:5520881-5520900 Msa0233210:CDS 60.0%
GGTGGCTCACCATATGGTGC+TGG - chr2_2:5520845-5520864 Msa0233210:CDS 60.0%
GATGGCTCAAGACAGCCCAC+TGG - chr2_2:5520881-5520900 Msa0233210:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 5519489 5520979 5519489 ID=Msa0233210;Name=Msa0233210
chr2_2 mRNA 5519489 5520979 5519489 ID=Msa0233210-mRNA-1;Parent=Msa0233210;Name=Msa0233210-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|0.5|0.4|5|0|241
chr2_2 exon 5520825 5520979 5520825 ID=Msa0233210-mRNA-1:exon:2425;Parent=Msa0233210-mRNA-1
chr2_2 exon 5520623 5520716 5520623 ID=Msa0233210-mRNA-1:exon:2424;Parent=Msa0233210-mRNA-1
chr2_2 exon 5520404 5520510 5520404 ID=Msa0233210-mRNA-1:exon:2423;Parent=Msa0233210-mRNA-1
chr2_2 exon 5520248 5520385 5520248 ID=Msa0233210-mRNA-1:exon:2422;Parent=Msa0233210-mRNA-1
chr2_2 exon 5519489 5519720 5519489 ID=Msa0233210-mRNA-1:exon:2421;Parent=Msa0233210-mRNA-1
chr2_2 CDS 5520825 5520979 5520825 ID=Msa0233210-mRNA-1:cds;Parent=Msa0233210-mRNA-1
chr2_2 CDS 5520623 5520716 5520623 ID=Msa0233210-mRNA-1:cds;Parent=Msa0233210-mRNA-1
chr2_2 CDS 5520404 5520510 5520404 ID=Msa0233210-mRNA-1:cds;Parent=Msa0233210-mRNA-1
chr2_2 CDS 5520248 5520385 5520248 ID=Msa0233210-mRNA-1:cds;Parent=Msa0233210-mRNA-1
chr2_2 CDS 5519489 5519720 5519489 ID=Msa0233210-mRNA-1:cds;Parent=Msa0233210-mRNA-1
Gene Sequence

>Msa0233210

ATGGAATTGGTTTTGTGTATAAAAATATGCAAGCTGCATACACTTCACGTTCACACTCACCAAGAACGCCCTTTTGGTTTCTATAGAGACAGAGAGAACAGAGCAGTTCAAGACTTCAAGTTACTAGCAGCAATGGCTACTAAAGTTTACATTGTCTACTATTCTATGTATGGACATGTTGGGAAGCTAGCTGAAGAGATCAAAAATGGAGTTGAATCCATAGAAGGTGTAGAAGCAAAACTCTGGCAGGTGCCTGAAATATTGCCAGAAGAGGTTCTTGGGAAGATGAAAGCACCTCCAAAGAGTGATGTTCCAATTATTTCAGCAAATGAGCTTCTTGAGGCTGATGGTTTTTTATTTGGAATGATGGCTACTCAATTCAAAGCATTTATGGATACAACTGGAGACCTATGGTGCACACAGAAACTTGCAGGAAAGCCTGCTGGCATCTTTTACAGCACTGCTTGTCAAGGAGGTGGTCAAGAAACTACACCGTTGACATCTATTACACAACTTGTTCACCATGGAATGATTTTTGTGCCCGTTGGATACACATTTGGTGCTGGAATGTTTGAGATAGAAAAGGTGAAAGGTGGCTCACCATATGGTGCTGGAACTTATGCAGGGGATGGCTCAAGACAGCCCACTGGATTAGAACTGGCTCAAGCTTTTCATCAAGGGAAATACTTTGCGGGAATTGCAAAGAAGCTCAAAGGGTCACAGTGA

Protein sequence

>Msa0233210

MELVLCIKICKLHTLHVHTHQERPFGFYRDRENRAVQDFKLLAAMATKVYIVYYSMYGHVGKLAEEIKNGVESIEGVEAKLWQVPEILPEEVLGKMKAPPKSDVPIISANELLEADGFLFGMMATQFKAFMDTTGDLWCTQKLAGKPAGIFYSTACQGGGQETTPLTSITQLVHHGMIFVPVGYTFGAGMFEIEKVKGGSPYGAGTYAGDGSRQPTGLELAQAFHQGKYFAGIAKKLKGSQ*