AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0190890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0190890 MtrunA17_Chr8g0361451 83.000 200 34 0 45 244 1 200 1.50e-122 347
Msa0190890 MtrunA17_Chr2g0318961 82.000 200 36 0 45 244 1 200 4.46e-120 340
Msa0190890 MtrunA17_Chr4g0048841 80.808 198 38 0 50 247 41 238 1.85e-116 332
Msa0190890 MtrunA17_Chr2g0280641 75.369 203 50 0 45 247 1 203 3.03e-110 315
Msa0190890 MtrunA17_Chr5g0429671 67.839 199 63 1 47 244 4 202 5.89e-98 284
Msa0190890 MtrunA17_Chr4g0034601 67.513 197 63 1 48 243 52 248 6.18e-92 271
Msa0190890 MtrunA17_Chr5g0403681 64.500 200 70 1 48 246 53 252 3.80e-89 264
Msa0190890 MtrunA17_Chr4g0048831 83.333 120 16 1 128 247 1 116 5.33e-67 202
Msa0190890 MtrunA17_Chr8g0361461 76.923 117 27 0 128 244 1 117 6.33e-61 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0190890 AT4G27270.1 81.095 201 38 0 45 245 1 201 5.02e-120 340
Msa0190890 AT5G54500.1 80.693 202 39 0 45 246 1 202 2.80e-119 338
Msa0190890 AT4G27270.3 80.000 190 38 0 56 245 1 190 2.81e-111 318
Msa0190890 AT4G27270.2 80.000 190 38 0 56 245 1 190 2.81e-111 318
Msa0190890 AT5G58800.1 66.332 199 66 1 47 244 4 202 9.26e-95 277
Msa0190890 AT5G58800.2 66.332 199 66 1 47 244 4 202 9.26e-95 277
Msa0190890 AT5G54500.2 79.012 162 34 0 45 206 1 162 4.14e-91 269
Msa0190890 AT4G36750.1 64.975 197 68 1 48 243 74 270 4.61e-90 267
Msa0190890 AT4G27270.4 83.333 150 25 0 96 245 1 150 1.12e-89 262

Find 56 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTCATTTGCTGAAATAAT+TGG 0.177953 2_1:+6404864 None:intergenic
ACCTCTTCTGGCAATATTTC+AGG 0.186131 2_1:+6404924 None:intergenic
TACTCAATTCAAAGCATTTA+TGG 0.233806 2_1:-6404787 Msa0190890:CDS
AGAAACCAAAAGGGCGTTCT+TGG 0.308627 2_1:+6405337 None:intergenic
ATAATTGGAACATCACTCTT+TGG 0.328363 2_1:+6404879 None:intergenic
GTGCATTATATAAATGGAAT+TGG 0.330285 2_1:-6405409 None:intergenic
ACTCACCAAGAACGCCCTTT+TGG 0.367633 2_1:-6405342 Msa0190890:CDS
TTTAGCTACTATTCTATGTA+TGG 0.386282 2_1:-6405138 Msa0190890:intron
CATCAAGGGAAATACTTTGC+GGG 0.388451 2_1:-6403946 Msa0190890:CDS
TGGTGCACACAGAAACTTGC+AGG 0.402973 2_1:-6404747 Msa0190890:CDS
ATCTTCCCAAGAACCTCTTC+TGG 0.413268 2_1:+6404912 None:intergenic
CAAGTTTCTGTGTGCACCAT+AGG 0.415808 2_1:+6404751 None:intergenic
GCCATCATTCCAAATCTTGT+TGG 0.419935 2_1:+6404810 None:intergenic
AAAGCATTTATGGATACAAC+TGG 0.420143 2_1:-6404777 Msa0190890:CDS
TCCAACAAGATTTGGAATGA+TGG 0.421484 2_1:-6404811 Msa0190890:CDS
TATTGCCAGAAGAGGTTCTT+GGG 0.434381 2_1:-6404917 Msa0190890:CDS
GTGCCCGTTGGATACACATT+TGG 0.442396 2_1:-6404081 Msa0190890:CDS
CTGTCTCTATAGAAACCAAA+AGG 0.458141 2_1:+6405327 None:intergenic
TATTCTATGTATGGACATGT+TGG 0.462480 2_1:-6405129 Msa0190890:CDS
AATGGAGTTGAATCCATAGA+AGG 0.462725 2_1:-6405084 Msa0190890:CDS
TATGGTGCTGGAACTTATGC+AGG 0.483004 2_1:-6404015 Msa0190890:CDS
ATATTGCCAGAAGAGGTTCT+TGG 0.489085 2_1:-6404918 Msa0190890:CDS
GCATAAGTTCCAGCACCATA+TGG 0.494566 2_1:+6404018 None:intergenic
TCATCAAGGGAAATACTTTG+CGG 0.497889 2_1:-6403947 Msa0190890:CDS
ACAGCCCACTGGATTAGAAC+TGG 0.499934 2_1:-6403980 Msa0190890:CDS
AATGAGCTTCTTGAGGCTGA+TGG 0.504019 2_1:-6404849 Msa0190890:CDS
GTGAAAGGTGGCTCACCATA+TGG 0.504157 2_1:-6404033 Msa0190890:CDS
GCACCAAATGTGTATCCAAC+GGG 0.505966 2_1:+6404078 None:intergenic
GTTGGATACACATTTGGTGC+TGG 0.509879 2_1:-6404075 Msa0190890:CDS
ATTGGAACATCACTCTTTGG+AGG 0.524679 2_1:+6404882 None:intergenic
ATTCTATGTATGGACATGTT+GGG 0.527530 2_1:-6405128 Msa0190890:CDS
GTGCTGTAAAAGATGCCAGC+AGG 0.530472 2_1:+6404720 None:intergenic
CTTCAAGTTACTAGCAGCAA+TGG 0.533135 2_1:-6405283 Msa0190890:CDS
GCTGGAACTTATGCAGGGGA+TGG 0.539914 2_1:-6404009 Msa0190890:CDS
GGTGGCTCACCATATGGTGC+TGG 0.541107 2_1:-6404027 Msa0190890:CDS
GAATTGCAAAGAAGCTCAAA+GGG 0.547992 2_1:-6403924 Msa0190890:CDS
AAACTTGCAGGAAAGCCTGC+TGG 0.549934 2_1:-6404735 Msa0190890:CDS
TGTAGAAGCAAAACTCTGGC+AGG 0.555434 2_1:-6405061 Msa0190890:intron
TTCAGCAAATGAGCTTCTTG+AGG 0.559049 2_1:-6404856 Msa0190890:CDS
TGGATACAACTGGAGACCTA+TGG 0.560259 2_1:-6404767 Msa0190890:CDS
GGAATTGCAAAGAAGCTCAA+AGG 0.567048 2_1:-6403925 Msa0190890:CDS
GATGGCTCAAGACAGCCCAC+TGG 0.577022 2_1:-6403991 Msa0190890:CDS
TGGAATGTTTGAGATAGAAA+AGG 0.585194 2_1:-6404055 Msa0190890:CDS
GCCTGAAATATTGCCAGAAG+AGG 0.587723 2_1:-6404925 Msa0190890:CDS
TACAGCACTGCTTGTCAAGG+AGG 0.588851 2_1:-6404705 Msa0190890:CDS
AGCACCAAATGTGTATCCAA+CGG 0.594733 2_1:+6404077 None:intergenic
TTGAGCCAGTTCTAATCCAG+TGG 0.603213 2_1:+6403975 None:intergenic
AGCACTGCTTGTCAAGGAGG+TGG 0.606846 2_1:-6404702 Msa0190890:CDS
TTTGAGATAGAAAAGGTGAA+AGG 0.612381 2_1:-6404048 Msa0190890:CDS
AAGGTGTAGAAGCAAAACTC+TGG 0.618036 2_1:-6405065 Msa0190890:CDS
TGTCTCTATAGAAACCAAAA+GGG 0.625559 2_1:+6405328 None:intergenic
ATGGTGCTGGAACTTATGCA+GGG 0.634036 2_1:-6404014 Msa0190890:CDS
ATTACACAACTTGTTCACCA+TGG 0.638391 2_1:-6404114 Msa0190890:CDS
TGAGCCAGTTCTAATCCAGT+GGG 0.641145 2_1:+6403976 None:intergenic
GAGATAGAAAAGGTGAAAGG+TGG 0.645866 2_1:-6404045 Msa0190890:CDS
TGGTGCTGGAACTTATGCAG+GGG 0.770860 2_1:-6404013 Msa0190890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGAATTCAATAATAAT+TGG - chr2_1:6404709-6404728 Msa0190890:CDS 10.0%
!!! TTTTAGAATTCAATAATAAT+TGG - chr2_1:6404709-6404728 Msa0190890:CDS 10.0%
!!! TATTGAATTCTAAAAACATT+TGG + chr2_1:6404704-6404723 None:intergenic 15.0%
!!! TAAATTAACTATTTTCGATT+TGG - chr2_1:6404895-6404914 Msa0190890:CDS 15.0%
!! TTGTAAAATCAGAAAATAAA+TGG + chr2_1:6405156-6405175 None:intergenic 15.0%
!!! TATTGAATTCTAAAAACATT+TGG + chr2_1:6404704-6404723 None:intergenic 15.0%
!!! TAAATTAACTATTTTCGATT+TGG - chr2_1:6404895-6404914 Msa0190890:CDS 15.0%
!! TTGTAAAATCAGAAAATAAA+TGG + chr2_1:6405156-6405175 None:intergenic 15.0%
!! ACATTAAATATAACTTCTGA+AGG + chr2_1:6404125-6404144 None:intergenic 20.0%
!! TTTCAAAAAATAAAGTGTGA+TGG + chr2_1:6404673-6404692 None:intergenic 20.0%
!! CATAAAATTACTAACAAAAG+AGG + chr2_1:6404831-6404850 None:intergenic 20.0%
!! ACATTAAATATAACTTCTGA+AGG + chr2_1:6404125-6404144 None:intergenic 20.0%
!! TTTCAAAAAATAAAGTGTGA+TGG + chr2_1:6404673-6404692 None:intergenic 20.0%
!! CATAAAATTACTAACAAAAG+AGG + chr2_1:6404831-6404850 None:intergenic 20.0%
!! TTAAATATAACTTCTGAAGG+AGG + chr2_1:6404122-6404141 None:intergenic 25.0%
! TTTAGCTACTATTCTATGTA+TGG - chr2_1:6404173-6404192 Msa0190890:intron 25.0%
!! TACTCAATTCAAAGCATTTA+TGG - chr2_1:6404524-6404543 Msa0190890:intron 25.0%
!! TTAAATATAACTTCTGAAGG+AGG + chr2_1:6404122-6404141 None:intergenic 25.0%
! TTTAGCTACTATTCTATGTA+TGG - chr2_1:6404173-6404192 Msa0190890:intron 25.0%
!! TACTCAATTCAAAGCATTTA+TGG - chr2_1:6404524-6404543 Msa0190890:intron 25.0%
TGTCTCTATAGAAACCAAAA+GGG + chr2_1:6403986-6404005 None:intergenic 30.0%
TATTCTATGTATGGACATGT+TGG - chr2_1:6404182-6404201 Msa0190890:intron 30.0%
ATTCTATGTATGGACATGTT+GGG - chr2_1:6404183-6404202 Msa0190890:intron 30.0%
ATAATTGGAACATCACTCTT+TGG + chr2_1:6404435-6404454 None:intergenic 30.0%
! AGCTCATTTGCTGAAATAAT+TGG + chr2_1:6404450-6404469 None:intergenic 30.0%
!!! TTTGGTTTTCCAACAAGATT+TGG - chr2_1:6404492-6404511 Msa0190890:intron 30.0%
! AAAGCATTTATGGATACAAC+TGG - chr2_1:6404534-6404553 Msa0190890:intron 30.0%
CATTCATTTCTAATTGATGC+GGG + chr2_1:6404740-6404759 None:intergenic 30.0%
CCATTCATTTCTAATTGATG+CGG + chr2_1:6404741-6404760 None:intergenic 30.0%
! GATACATTTATGGACTATAG+TGG + chr2_1:6404784-6404803 None:intergenic 30.0%
TTGCAGTTACGATACATTTA+TGG + chr2_1:6404794-6404813 None:intergenic 30.0%
!! TACTAACAAAAGAGGTACTA+GGG + chr2_1:6404823-6404842 None:intergenic 30.0%
!! TTACTAACAAAAGAGGTACT+AGG + chr2_1:6404824-6404843 None:intergenic 30.0%
! TGGAATGTTTGAGATAGAAA+AGG - chr2_1:6405256-6405275 Msa0190890:intron 30.0%
! TTTGAGATAGAAAAGGTGAA+AGG - chr2_1:6405263-6405282 Msa0190890:intron 30.0%
TGTCTCTATAGAAACCAAAA+GGG + chr2_1:6403986-6404005 None:intergenic 30.0%
TATTCTATGTATGGACATGT+TGG - chr2_1:6404182-6404201 Msa0190890:intron 30.0%
ATTCTATGTATGGACATGTT+GGG - chr2_1:6404183-6404202 Msa0190890:intron 30.0%
ATAATTGGAACATCACTCTT+TGG + chr2_1:6404435-6404454 None:intergenic 30.0%
! AGCTCATTTGCTGAAATAAT+TGG + chr2_1:6404450-6404469 None:intergenic 30.0%
!!! TTTGGTTTTCCAACAAGATT+TGG - chr2_1:6404492-6404511 Msa0190890:intron 30.0%
! AAAGCATTTATGGATACAAC+TGG - chr2_1:6404534-6404553 Msa0190890:intron 30.0%
CATTCATTTCTAATTGATGC+GGG + chr2_1:6404740-6404759 None:intergenic 30.0%
CCATTCATTTCTAATTGATG+CGG + chr2_1:6404741-6404760 None:intergenic 30.0%
! GATACATTTATGGACTATAG+TGG + chr2_1:6404784-6404803 None:intergenic 30.0%
TTGCAGTTACGATACATTTA+TGG + chr2_1:6404794-6404813 None:intergenic 30.0%
!! TACTAACAAAAGAGGTACTA+GGG + chr2_1:6404823-6404842 None:intergenic 30.0%
!! TTACTAACAAAAGAGGTACT+AGG + chr2_1:6404824-6404843 None:intergenic 30.0%
! TGGAATGTTTGAGATAGAAA+AGG - chr2_1:6405256-6405275 Msa0190890:intron 30.0%
! TTTGAGATAGAAAAGGTGAA+AGG - chr2_1:6405263-6405282 Msa0190890:intron 30.0%
CTGTCTCTATAGAAACCAAA+AGG + chr2_1:6403987-6404006 None:intergenic 35.0%
AGATTCGTGAAAATAGAGAG+AGG + chr2_1:6404088-6404107 None:intergenic 35.0%
CTAGCTGAAGAGATCAAAAA+TGG - chr2_1:6404209-6404228 Msa0190890:intron 35.0%
AATGGAGTTGAATCCATAGA+AGG - chr2_1:6404227-6404246 Msa0190890:intron 35.0%
! TTTTGCTTCTACACCTTCTA+TGG + chr2_1:6404243-6404262 None:intergenic 35.0%
!! TGTTTGAGAAGTGTTCAGTT+TGG + chr2_1:6404294-6404313 None:intergenic 35.0%
! TCCAACAAGATTTGGAATGA+TGG - chr2_1:6404500-6404519 Msa0190890:intron 35.0%
ACAGAAGAATGAGAAACTCA+CGG + chr2_1:6404648-6404667 None:intergenic 35.0%
CCGCATCAATTAGAAATGAA+TGG - chr2_1:6404738-6404757 Msa0190890:CDS 35.0%
GTGTTCAAAAGTTTACTCGT+TGG + chr2_1:6404865-6404884 None:intergenic 35.0%
TAACAGCGTCTCATACATTT+AGG - chr2_1:6404927-6404946 Msa0190890:CDS 35.0%
AACAGCGTCTCATACATTTA+GGG - chr2_1:6404928-6404947 Msa0190890:CDS 35.0%
CTGATTAATTGCTACTGCTA+AGG - chr2_1:6405041-6405060 Msa0190890:intron 35.0%
! CTAAGGTTTTTCTTACACTC+TGG - chr2_1:6405058-6405077 Msa0190890:intron 35.0%
! TGATTTTACAATGTACCTGC+AGG - chr2_1:6405165-6405184 Msa0190890:intron 35.0%
! ATTACACAACTTGTTCACCA+TGG - chr2_1:6405197-6405216 Msa0190890:intron 35.0%
TCATCAAGGGAAATACTTTG+CGG - chr2_1:6405364-6405383 Msa0190890:CDS 35.0%
GAATTGCAAAGAAGCTCAAA+GGG - chr2_1:6405387-6405406 Msa0190890:CDS 35.0%
CTGTCTCTATAGAAACCAAA+AGG + chr2_1:6403987-6404006 None:intergenic 35.0%
AGATTCGTGAAAATAGAGAG+AGG + chr2_1:6404088-6404107 None:intergenic 35.0%
CTAGCTGAAGAGATCAAAAA+TGG - chr2_1:6404209-6404228 Msa0190890:intron 35.0%
AATGGAGTTGAATCCATAGA+AGG - chr2_1:6404227-6404246 Msa0190890:intron 35.0%
! TTTTGCTTCTACACCTTCTA+TGG + chr2_1:6404243-6404262 None:intergenic 35.0%
!! TGTTTGAGAAGTGTTCAGTT+TGG + chr2_1:6404294-6404313 None:intergenic 35.0%
! TCCAACAAGATTTGGAATGA+TGG - chr2_1:6404500-6404519 Msa0190890:intron 35.0%
ACAGAAGAATGAGAAACTCA+CGG + chr2_1:6404648-6404667 None:intergenic 35.0%
CCGCATCAATTAGAAATGAA+TGG - chr2_1:6404738-6404757 Msa0190890:CDS 35.0%
GTGTTCAAAAGTTTACTCGT+TGG + chr2_1:6404865-6404884 None:intergenic 35.0%
TAACAGCGTCTCATACATTT+AGG - chr2_1:6404927-6404946 Msa0190890:CDS 35.0%
AACAGCGTCTCATACATTTA+GGG - chr2_1:6404928-6404947 Msa0190890:CDS 35.0%
CTGATTAATTGCTACTGCTA+AGG - chr2_1:6405041-6405060 Msa0190890:intron 35.0%
! CTAAGGTTTTTCTTACACTC+TGG - chr2_1:6405058-6405077 Msa0190890:intron 35.0%
! TGATTTTACAATGTACCTGC+AGG - chr2_1:6405165-6405184 Msa0190890:intron 35.0%
! ATTACACAACTTGTTCACCA+TGG - chr2_1:6405197-6405216 Msa0190890:intron 35.0%
TCATCAAGGGAAATACTTTG+CGG - chr2_1:6405364-6405383 Msa0190890:CDS 35.0%
GAATTGCAAAGAAGCTCAAA+GGG - chr2_1:6405387-6405406 Msa0190890:CDS 35.0%
! CTTCAAGTTACTAGCAGCAA+TGG - chr2_1:6404028-6404047 Msa0190890:CDS 40.0%
AAGGTGTAGAAGCAAAACTC+TGG - chr2_1:6404246-6404265 Msa0190890:intron 40.0%
!! GAGAAGTGTTCAGTTTGGTT+TGG + chr2_1:6404289-6404308 None:intergenic 40.0%
ACCTCTTCTGGCAATATTTC+AGG + chr2_1:6404390-6404409 None:intergenic 40.0%
ATATTGCCAGAAGAGGTTCT+TGG - chr2_1:6404393-6404412 Msa0190890:intron 40.0%
TATTGCCAGAAGAGGTTCTT+GGG - chr2_1:6404394-6404413 Msa0190890:intron 40.0%
ATTGGAACATCACTCTTTGG+AGG + chr2_1:6404432-6404451 None:intergenic 40.0%
TTCAGCAAATGAGCTTCTTG+AGG - chr2_1:6404455-6404474 Msa0190890:intron 40.0%
!!! GAGGCTGATGGTTTTTTGTT+TGG - chr2_1:6404474-6404493 Msa0190890:intron 40.0%
GCCATCATTCCAAATCTTGT+TGG + chr2_1:6404504-6404523 None:intergenic 40.0%
! TTTTACAGCACTGCTTGTCA+AGG - chr2_1:6404603-6404622 Msa0190890:intron 40.0%
TGTAATAGATGTCAACCTGC+AGG + chr2_1:6405183-6405202 None:intergenic 40.0%
AGCACCAAATGTGTATCCAA+CGG + chr2_1:6405237-6405256 None:intergenic 40.0%
GAGATAGAAAAGGTGAAAGG+TGG - chr2_1:6405266-6405285 Msa0190890:CDS 40.0%
! TGGCTCAAGCTTTTCATCAA+GGG - chr2_1:6405351-6405370 Msa0190890:CDS 40.0%
CATCAAGGGAAATACTTTGC+GGG - chr2_1:6405365-6405384 Msa0190890:CDS 40.0%
GGAATTGCAAAGAAGCTCAA+AGG - chr2_1:6405386-6405405 Msa0190890:CDS 40.0%
! CTTCAAGTTACTAGCAGCAA+TGG - chr2_1:6404028-6404047 Msa0190890:CDS 40.0%
AAGGTGTAGAAGCAAAACTC+TGG - chr2_1:6404246-6404265 Msa0190890:intron 40.0%
!! GAGAAGTGTTCAGTTTGGTT+TGG + chr2_1:6404289-6404308 None:intergenic 40.0%
ACCTCTTCTGGCAATATTTC+AGG + chr2_1:6404390-6404409 None:intergenic 40.0%
ATATTGCCAGAAGAGGTTCT+TGG - chr2_1:6404393-6404412 Msa0190890:intron 40.0%
TATTGCCAGAAGAGGTTCTT+GGG - chr2_1:6404394-6404413 Msa0190890:intron 40.0%
ATTGGAACATCACTCTTTGG+AGG + chr2_1:6404432-6404451 None:intergenic 40.0%
TTCAGCAAATGAGCTTCTTG+AGG - chr2_1:6404455-6404474 Msa0190890:intron 40.0%
!!! GAGGCTGATGGTTTTTTGTT+TGG - chr2_1:6404474-6404493 Msa0190890:intron 40.0%
GCCATCATTCCAAATCTTGT+TGG + chr2_1:6404504-6404523 None:intergenic 40.0%
! TTTTACAGCACTGCTTGTCA+AGG - chr2_1:6404603-6404622 Msa0190890:intron 40.0%
TGTAATAGATGTCAACCTGC+AGG + chr2_1:6405183-6405202 None:intergenic 40.0%
AGCACCAAATGTGTATCCAA+CGG + chr2_1:6405237-6405256 None:intergenic 40.0%
GAGATAGAAAAGGTGAAAGG+TGG - chr2_1:6405266-6405285 Msa0190890:CDS 40.0%
! TGGCTCAAGCTTTTCATCAA+GGG - chr2_1:6405351-6405370 Msa0190890:CDS 40.0%
CATCAAGGGAAATACTTTGC+GGG - chr2_1:6405365-6405384 Msa0190890:CDS 40.0%
GGAATTGCAAAGAAGCTCAA+AGG - chr2_1:6405386-6405405 Msa0190890:CDS 40.0%
!! AGAAACCAAAAGGGCGTTCT+TGG + chr2_1:6403977-6403996 None:intergenic 45.0%
TGTAGAAGCAAAACTCTGGC+AGG - chr2_1:6404250-6404269 Msa0190890:intron 45.0%
GCCTGAAATATTGCCAGAAG+AGG - chr2_1:6404386-6404405 Msa0190890:intron 45.0%
ATCTTCCCAAGAACCTCTTC+TGG + chr2_1:6404402-6404421 None:intergenic 45.0%
AATGAGCTTCTTGAGGCTGA+TGG - chr2_1:6404462-6404481 Msa0190890:intron 45.0%
TGGATACAACTGGAGACCTA+TGG - chr2_1:6404544-6404563 Msa0190890:intron 45.0%
CAAGTTTCTGTGTGCACCAT+AGG + chr2_1:6404563-6404582 None:intergenic 45.0%
ATAGCACTTGCGGAAAGTCT+GGG + chr2_1:6405088-6405107 None:intergenic 45.0%
CATGACTCTGATAGCACTTG+CGG + chr2_1:6405098-6405117 None:intergenic 45.0%
CGGGCACAAAAATCATTCCA+TGG + chr2_1:6405217-6405236 None:intergenic 45.0%
! GGAATGATTTTTGTGCCCGT+TGG - chr2_1:6405218-6405237 Msa0190890:intron 45.0%
GCACCAAATGTGTATCCAAC+GGG + chr2_1:6405236-6405255 None:intergenic 45.0%
!! GTTGGATACACATTTGGTGC+TGG - chr2_1:6405236-6405255 Msa0190890:intron 45.0%
GCATAAGTTCCAGCACCATA+TGG + chr2_1:6405296-6405315 None:intergenic 45.0%
! TATGGTGCTGGAACTTATGC+AGG - chr2_1:6405296-6405315 Msa0190890:CDS 45.0%
! ATGGTGCTGGAACTTATGCA+GGG - chr2_1:6405297-6405316 Msa0190890:CDS 45.0%
! TGAGCCAGTTCTAATCCAGT+GGG + chr2_1:6405338-6405357 None:intergenic 45.0%
! TTGAGCCAGTTCTAATCCAG+TGG + chr2_1:6405339-6405358 None:intergenic 45.0%
! CTGGCTCAAGCTTTTCATCA+AGG - chr2_1:6405350-6405369 Msa0190890:CDS 45.0%
!! AGAAACCAAAAGGGCGTTCT+TGG + chr2_1:6403977-6403996 None:intergenic 45.0%
TGTAGAAGCAAAACTCTGGC+AGG - chr2_1:6404250-6404269 Msa0190890:intron 45.0%
GCCTGAAATATTGCCAGAAG+AGG - chr2_1:6404386-6404405 Msa0190890:intron 45.0%
ATCTTCCCAAGAACCTCTTC+TGG + chr2_1:6404402-6404421 None:intergenic 45.0%
AATGAGCTTCTTGAGGCTGA+TGG - chr2_1:6404462-6404481 Msa0190890:intron 45.0%
TGGATACAACTGGAGACCTA+TGG - chr2_1:6404544-6404563 Msa0190890:intron 45.0%
CAAGTTTCTGTGTGCACCAT+AGG + chr2_1:6404563-6404582 None:intergenic 45.0%
ATAGCACTTGCGGAAAGTCT+GGG + chr2_1:6405088-6405107 None:intergenic 45.0%
CATGACTCTGATAGCACTTG+CGG + chr2_1:6405098-6405117 None:intergenic 45.0%
CGGGCACAAAAATCATTCCA+TGG + chr2_1:6405217-6405236 None:intergenic 45.0%
! GGAATGATTTTTGTGCCCGT+TGG - chr2_1:6405218-6405237 Msa0190890:intron 45.0%
GCACCAAATGTGTATCCAAC+GGG + chr2_1:6405236-6405255 None:intergenic 45.0%
!! GTTGGATACACATTTGGTGC+TGG - chr2_1:6405236-6405255 Msa0190890:intron 45.0%
GCATAAGTTCCAGCACCATA+TGG + chr2_1:6405296-6405315 None:intergenic 45.0%
! TATGGTGCTGGAACTTATGC+AGG - chr2_1:6405296-6405315 Msa0190890:CDS 45.0%
! ATGGTGCTGGAACTTATGCA+GGG - chr2_1:6405297-6405316 Msa0190890:CDS 45.0%
! TGAGCCAGTTCTAATCCAGT+GGG + chr2_1:6405338-6405357 None:intergenic 45.0%
! TTGAGCCAGTTCTAATCCAG+TGG + chr2_1:6405339-6405358 None:intergenic 45.0%
! CTGGCTCAAGCTTTTCATCA+AGG - chr2_1:6405350-6405369 Msa0190890:CDS 45.0%
!! ATTTATTTATATATATGTAT+AGG - chr2_1:6404362-6404381 Msa0190890:intron 5.0%
!! ATTTATTTATATATATGTAT+AGG - chr2_1:6404362-6404381 Msa0190890:intron 5.0%
! ACTCACCAAGAACGCCCTTT+TGG - chr2_1:6403969-6403988 Msa0190890:CDS 50.0%
TGGTGCACACAGAAACTTGC+AGG - chr2_1:6404564-6404583 Msa0190890:intron 50.0%
AAACTTGCAGGAAAGCCTGC+TGG - chr2_1:6404576-6404595 Msa0190890:intron 50.0%
GTGCTGTAAAAGATGCCAGC+AGG + chr2_1:6404594-6404613 None:intergenic 50.0%
TACAGCACTGCTTGTCAAGG+AGG - chr2_1:6404606-6404625 Msa0190890:intron 50.0%
GATAGCACTTGCGGAAAGTC+TGG + chr2_1:6405089-6405108 None:intergenic 50.0%
CGCAAGTGCTATCAGAGTCA+TGG - chr2_1:6405096-6405115 Msa0190890:CDS 50.0%
GTGCCCGTTGGATACACATT+TGG - chr2_1:6405230-6405249 Msa0190890:intron 50.0%
GTGAAAGGTGGCTCACCATA+TGG - chr2_1:6405278-6405297 Msa0190890:CDS 50.0%
! TGGTGCTGGAACTTATGCAG+GGG - chr2_1:6405298-6405317 Msa0190890:CDS 50.0%
! ACAGCCCACTGGATTAGAAC+TGG - chr2_1:6405331-6405350 Msa0190890:CDS 50.0%
! ACTCACCAAGAACGCCCTTT+TGG - chr2_1:6403969-6403988 Msa0190890:CDS 50.0%
TGGTGCACACAGAAACTTGC+AGG - chr2_1:6404564-6404583 Msa0190890:intron 50.0%
AAACTTGCAGGAAAGCCTGC+TGG - chr2_1:6404576-6404595 Msa0190890:intron 50.0%
GTGCTGTAAAAGATGCCAGC+AGG + chr2_1:6404594-6404613 None:intergenic 50.0%
TACAGCACTGCTTGTCAAGG+AGG - chr2_1:6404606-6404625 Msa0190890:intron 50.0%
GATAGCACTTGCGGAAAGTC+TGG + chr2_1:6405089-6405108 None:intergenic 50.0%
CGCAAGTGCTATCAGAGTCA+TGG - chr2_1:6405096-6405115 Msa0190890:CDS 50.0%
GTGCCCGTTGGATACACATT+TGG - chr2_1:6405230-6405249 Msa0190890:intron 50.0%
GTGAAAGGTGGCTCACCATA+TGG - chr2_1:6405278-6405297 Msa0190890:CDS 50.0%
! TGGTGCTGGAACTTATGCAG+GGG - chr2_1:6405298-6405317 Msa0190890:CDS 50.0%
! ACAGCCCACTGGATTAGAAC+TGG - chr2_1:6405331-6405350 Msa0190890:CDS 50.0%
AGCACTGCTTGTCAAGGAGG+TGG - chr2_1:6404609-6404628 Msa0190890:intron 55.0%
GCTGGAACTTATGCAGGGGA+TGG - chr2_1:6405302-6405321 Msa0190890:CDS 55.0%
AGCACTGCTTGTCAAGGAGG+TGG - chr2_1:6404609-6404628 Msa0190890:intron 55.0%
GCTGGAACTTATGCAGGGGA+TGG - chr2_1:6405302-6405321 Msa0190890:CDS 55.0%
GGTGGCTCACCATATGGTGC+TGG - chr2_1:6405284-6405303 Msa0190890:CDS 60.0%
GATGGCTCAAGACAGCCCAC+TGG - chr2_1:6405320-6405339 Msa0190890:CDS 60.0%
GGTGGCTCACCATATGGTGC+TGG - chr2_1:6405284-6405303 Msa0190890:CDS 60.0%
GATGGCTCAAGACAGCCCAC+TGG - chr2_1:6405320-6405339 Msa0190890:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 6403915 6405418 6403915 ID=Msa0190890;Name=Msa0190890
chr2_1 mRNA 6403915 6405418 6403915 ID=Msa0190890-mRNA-1;Parent=Msa0190890;Name=Msa0190890-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|1|1|4|0|247
chr2_1 exon 6405264 6405418 6405264 ID=Msa0190890-mRNA-1:exon:2922;Parent=Msa0190890-mRNA-1
chr2_1 exon 6405062 6405155 6405062 ID=Msa0190890-mRNA-1:exon:2921;Parent=Msa0190890-mRNA-1
chr2_1 exon 6404687 6404949 6404687 ID=Msa0190890-mRNA-1:exon:2920;Parent=Msa0190890-mRNA-1
chr2_1 exon 6403915 6404146 6403915 ID=Msa0190890-mRNA-1:exon:2919;Parent=Msa0190890-mRNA-1
chr2_1 CDS 6405264 6405418 6405264 ID=Msa0190890-mRNA-1:cds;Parent=Msa0190890-mRNA-1
chr2_1 CDS 6405062 6405155 6405062 ID=Msa0190890-mRNA-1:cds;Parent=Msa0190890-mRNA-1
chr2_1 CDS 6404687 6404949 6404687 ID=Msa0190890-mRNA-1:cds;Parent=Msa0190890-mRNA-1
chr2_1 CDS 6403915 6404146 6403915 ID=Msa0190890-mRNA-1:cds;Parent=Msa0190890-mRNA-1
Gene Sequence

>Msa0190890

ATGGAATTGGTTTTGTGTATAAAAATATGCAAGCTGCATACACTTCACGTTCACACTCACCAAGAACGCCCTTTTGGTTTCTATAGAGACAGAGAGAACAGAGCAGTTCAAGACTTCAAGTTACTAGCAGCAATGGCTACTAAAGTTTACATTGTCTACTATTCTATGTATGGACATGTTGGGAAGCTAGCTGAAGAGATCAAAAATGGAGTTGAATCCATAGAAGGTGTAGAAGCAAAACTCTGGCAGGTGCCTGAAATATTGCCAGAAGAGGTTCTTGGGAAGATGAAAGCACCTCCAAAGAGTGATGTTCCAATTATTTCAGCAAATGAGCTTCTTGAGGCTGATGGTTTTTTGTTTGGTTTTCCAACAAGATTTGGAATGATGGCTACTCAATTCAAAGCATTTATGGATACAACTGGAGACCTATGGTGCACACAGAAACTTGCAGGAAAGCCTGCTGGCATCTTTTACAGCACTGCTTGTCAAGGAGGTGGTCAAGAAACTACACCGTTGACATCTATTACACAACTTGTTCACCATGGAATGATTTTTGTGCCCGTTGGATACACATTTGGTGCTGGAATGTTTGAGATAGAAAAGGTGAAAGGTGGCTCACCATATGGTGCTGGAACTTATGCAGGGGATGGCTCAAGACAGCCCACTGGATTAGAACTGGCTCAAGCTTTTCATCAAGGGAAATACTTTGCGGGAATTGCAAAGAAGCTCAAAGGGTCACAGTGA

Protein sequence

>Msa0190890

MELVLCIKICKLHTLHVHTHQERPFGFYRDRENRAVQDFKLLAAMATKVYIVYYSMYGHVGKLAEEIKNGVESIEGVEAKLWQVPEILPEEVLGKMKAPPKSDVPIISANELLEADGFLFGFPTRFGMMATQFKAFMDTTGDLWCTQKLAGKPAGIFYSTACQGGGQETTPLTSITQLVHHGMIFVPVGYTFGAGMFEIEKVKGGSPYGAGTYAGDGSRQPTGLELAQAFHQGKYFAGIAKKLKGSQ*