AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0583390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0583390 MtrunA17_Chr7g0246701 96.082 638 25 0 1 638 1 638 0.0 1295
Msa0583390 MtrunA17_Chr8g0350391 74.882 633 155 4 4 633 7 638 0.0 1008
Msa0583390 MtrunA17_Chr6g0472571 63.550 631 215 6 7 633 15 634 0.0 852
Msa0583390 MtrunA17_Chr1g0203741 62.698 630 219 7 1 626 1 618 0.0 832
Msa0583390 MtrunA17_Chr8g0388881 58.880 625 234 6 18 634 20 629 0.0 773
Msa0583390 MtrunA17_Chr4g0055031 56.661 623 243 7 10 627 5 605 0.0 739
Msa0583390 MtrunA17_Chr8g0361791 55.172 609 246 6 23 627 17 602 0.0 715
Msa0583390 MtrunA17_Chr5g0416991 53.571 616 255 7 18 627 11 601 0.0 688
Msa0583390 MtrunA17_Chr3g0092501 51.929 622 263 7 10 627 10 599 0.0 662
Msa0583390 MtrunA17_Chr7g0214551 52.075 530 248 3 95 619 37 565 0.0 613
Msa0583390 MtrunA17_Chr8g0369481 50.566 530 248 10 102 627 71 590 1.04e-180 525
Msa0583390 MtrunA17_Chr5g0409411 44.937 632 297 17 12 636 11 598 7.48e-172 502
Msa0583390 MtrunA17_Chr8g0350351 44.465 542 271 10 93 626 82 601 1.40e-167 491
Msa0583390 MtrunA17_Chr7g0246681 46.981 530 253 9 104 625 78 587 5.69e-167 489
Msa0583390 MtrunA17_Chr1g0183721 41.840 576 297 12 69 629 37 589 1.03e-155 461
Msa0583390 MtrunA17_Chr3g0112341 44.633 531 265 13 103 623 155 666 6.41e-152 454
Msa0583390 MtrunA17_Chr1g0167381 45.117 512 253 10 102 601 93 588 6.29e-150 447
Msa0583390 MtrunA17_Chr1g0187601 43.542 542 273 12 102 627 92 616 1.08e-146 439
Msa0583390 MtrunA17_Chr5g0435751 38.804 652 294 20 25 622 17 617 1.47e-143 431
Msa0583390 MtrunA17_Chr1g0159741 42.669 532 274 14 105 624 146 658 3.37e-140 423
Msa0583390 MtrunA17_Chr3g0130381 40.067 599 310 21 56 631 210 782 3.26e-132 407
Msa0583390 MtrunA17_Chr1g0171781 36.467 617 339 13 27 626 24 604 1.35e-129 394
Msa0583390 MtrunA17_Chr5g0437501 36.076 632 337 22 21 625 14 605 1.85e-127 389
Msa0583390 MtrunA17_Chr8g0384431 39.892 554 293 17 69 602 254 787 2.15e-127 395
Msa0583390 MtrunA17_Chr3g0113981 39.474 532 277 14 110 630 175 672 8.65e-127 389
Msa0583390 MtrunA17_Chr3g0125511 40.374 535 277 18 109 625 232 742 2.92e-125 388
Msa0583390 MtrunA17_Chr8g0372471 39.483 542 279 16 103 625 379 890 1.95e-121 382
Msa0583390 MtrunA17_Chr1g0155141 34.659 528 294 16 111 625 210 699 3.53e-92 300
Msa0583390 MtrunA17_Chr3g0115931 30.745 644 363 20 20 625 90 688 3.46e-90 294
Msa0583390 MtrunA17_Chr5g0426281 29.624 638 368 22 20 625 82 670 1.50e-87 286
Msa0583390 MtrunA17_Chr5g0404771 47.679 237 103 6 103 327 321 548 5.04e-67 229
Msa0583390 MtrunA17_Chr4g0043121 29.929 421 257 12 1 411 5 397 3.48e-53 188
Msa0583390 MtrunA17_Chr5g0404761 33.566 286 160 11 353 625 4 272 1.15e-45 163
Msa0583390 MtrunA17_Chr4g0043131 43.151 146 77 4 482 624 40 182 1.13e-33 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0583390 AT2G45750.1 68.971 622 179 4 18 635 14 625 0.0 921
Msa0583390 AT4G00750.1 68.297 634 183 6 4 633 11 630 0.0 918
Msa0583390 AT4G10440.1 60.267 599 230 3 29 627 28 618 0.0 777
Msa0583390 AT1G33170.1 57.643 628 241 5 19 628 17 637 0.0 774
Msa0583390 AT1G26850.2 56.650 609 244 5 22 627 19 610 0.0 727
Msa0583390 AT1G26850.1 56.650 609 244 5 22 627 19 610 0.0 727
Msa0583390 AT4G18030.1 56.260 615 248 8 14 627 11 605 0.0 705
Msa0583390 AT2G43200.2 52.500 520 241 4 102 620 92 606 0.0 584
Msa0583390 AT2G43200.1 52.500 520 241 4 102 620 92 606 0.0 584
Msa0583390 AT1G26850.3 54.183 502 210 5 22 520 19 503 0.0 564
Msa0583390 AT1G31850.1 46.154 624 298 13 10 627 7 598 0.0 540
Msa0583390 AT1G31850.2 46.154 624 298 13 10 627 7 598 0.0 540
Msa0583390 AT1G31850.4 46.154 624 298 13 10 627 7 598 0.0 540
Msa0583390 AT1G31850.3 46.154 624 298 13 10 627 7 598 0.0 540
Msa0583390 AT4G19120.1 48.295 528 261 9 104 627 73 592 2.74e-177 517
Msa0583390 AT4G19120.2 48.295 528 261 9 104 627 73 592 2.74e-177 517
Msa0583390 AT4G00740.1 46.435 547 259 13 93 628 73 596 3.82e-168 493
Msa0583390 AT4G00740.2 46.435 547 259 13 93 628 73 596 3.82e-168 493
Msa0583390 AT1G04430.1 41.319 576 301 11 81 635 64 623 2.04e-151 451
Msa0583390 AT1G04430.3 41.319 576 301 11 81 635 64 623 2.04e-151 451
Msa0583390 AT1G04430.2 41.319 576 301 11 81 635 64 623 2.04e-151 451
Msa0583390 AT2G39750.1 42.620 542 280 13 93 623 169 690 3.04e-149 448
Msa0583390 AT4G19120.3 49.539 434 208 8 104 533 73 499 5.35e-147 436
Msa0583390 AT4G14360.1 44.727 512 255 10 102 601 77 572 9.00e-147 439
Msa0583390 AT4G14360.2 44.727 512 255 10 102 601 77 572 9.00e-147 439
Msa0583390 AT3G23300.2 42.620 542 281 11 102 629 80 605 9.11e-146 436
Msa0583390 AT3G23300.1 42.620 542 281 11 102 629 80 605 9.11e-146 436
Msa0583390 AT5G06050.1 41.667 552 287 15 90 627 136 666 2.57e-145 437
Msa0583390 AT5G14430.1 41.734 623 313 18 25 628 16 607 8.86e-145 434
Msa0583390 AT1G77260.1 42.726 543 278 14 92 623 134 654 4.16e-143 431
Msa0583390 AT5G14430.2 41.413 623 315 18 25 628 16 607 1.16e-142 428
Msa0583390 AT5G04060.1 40.146 548 287 12 92 626 79 598 6.76e-133 403
Msa0583390 AT3G10200.1 40.556 540 281 14 103 626 74 589 1.38e-131 399
Msa0583390 AT2G40280.1 41.155 537 262 17 110 631 90 587 1.74e-130 396
Msa0583390 AT1G29470.1 37.138 622 339 19 37 634 173 766 6.97e-129 398
Msa0583390 AT1G29470.2 37.138 622 339 19 37 634 173 766 6.97e-129 398
Msa0583390 AT3G56080.1 41.210 529 264 16 110 625 114 608 7.19e-129 393
Msa0583390 AT2G34300.2 40.472 551 286 16 103 637 242 766 4.32e-128 396
Msa0583390 AT2G34300.3 40.472 551 286 16 103 637 242 766 4.32e-128 396
Msa0583390 AT2G34300.1 40.472 551 286 16 103 637 242 766 4.32e-128 396
Msa0583390 AT5G64030.1 39.479 537 276 16 110 625 308 816 1.95e-125 390
Msa0583390 AT3G51070.1 40.183 545 278 19 109 634 380 895 1.69e-124 390
Msa0583390 AT3G10200.2 40.110 546 275 15 103 620 74 595 2.91e-123 378
Msa0583390 AT3G56080.2 42.765 463 226 15 110 559 114 550 6.58e-115 355
Msa0583390 AT3G51070.2 41.239 468 238 16 109 559 380 827 3.75e-107 343
Msa0583390 AT1G19430.1 35.417 528 291 16 111 625 232 722 4.06e-94 306
Msa0583390 AT1G19430.3 35.417 528 291 16 111 625 232 722 4.06e-94 306
Msa0583390 AT1G13860.4 33.333 549 302 15 97 614 77 592 1.22e-90 293
Msa0583390 AT1G13860.3 33.333 549 302 15 97 614 77 592 1.22e-90 293
Msa0583390 AT1G13860.1 33.333 549 302 15 97 614 77 592 1.22e-90 293
Msa0583390 AT1G13860.5 33.333 549 302 15 97 614 77 592 1.22e-90 293
Msa0583390 AT1G78240.1 33.514 555 310 17 104 624 149 678 3.87e-89 291
Msa0583390 AT1G78240.2 33.514 555 310 17 104 624 149 678 3.87e-89 291
Msa0583390 AT2G03480.2 32.616 558 303 15 95 624 80 592 1.24e-87 285
Msa0583390 AT2G03480.1 32.258 558 316 16 95 624 80 603 3.93e-84 276
Msa0583390 AT1G13860.2 34.430 456 249 13 187 614 3 436 3.12e-79 258
Msa0583390 AT1G19430.2 33.333 396 220 13 111 494 232 595 9.27e-54 194
Msa0583390 AT2G03480.3 30.581 327 208 6 95 411 80 397 3.62e-46 169

Find 217 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAAAATGAACCCAATTT+TGG 0.133779 4_2:-1944821 None:intergenic
TTGCAAACCACCCACATAAA+TGG 0.193676 4_2:-1948996 None:intergenic
TATCAGGGCCACCAATAAAT+TGG 0.228314 4_2:+1946667 Msa0583390:CDS
CAATGGCTCTCCCAATTTAT+TGG 0.228514 4_2:-1946678 None:intergenic
TTCGGACGGACCCATCTTTA+AGG 0.233056 4_2:-1944929 None:intergenic
TTTGACAACTTTGTAATTGA+TGG 0.245277 4_2:-1949074 None:intergenic
CATTCTGGCCCCAAGGAATT+AGG 0.252109 4_2:-1946492 None:intergenic
GTCACACGCGCTGCGGATTC+TGG 0.263634 4_2:-1944552 None:intergenic
GAGAGAAAGAGGGTTTAGTT+TGG 0.291150 4_2:-1944099 None:intergenic
CAAGGATATATTTACCATTC+TGG 0.298743 4_2:-1946507 None:intergenic
CTCACGTTGCCTAATTCCTT+GGG 0.309107 4_2:+1946483 Msa0583390:CDS
AAGGATTAGCAGTGGAAGTT+TGG 0.319848 4_2:+1947541 Msa0583390:CDS
TGTCAAACATGTATCCATTT+TGG 0.323300 4_2:-1947435 None:intergenic
GGAGGGTATTGGATTCTATC+AGG 0.324275 4_2:+1946651 Msa0583390:CDS
TGCAAACCACCCACATAAAT+GGG 0.324448 4_2:-1948995 None:intergenic
GGTGACCGGTTCAGGTTTCC+TGG 0.324820 4_2:+1944843 Msa0583390:CDS
GTGGGTCGGGGACGTTATGA+TGG 0.342914 4_2:-1944530 None:intergenic
AATTAATCAGGTTGCAAGTT+GGG 0.358924 4_2:+1946294 Msa0583390:intron
GCTGCGGATTCTGGTGGGTC+GGG 0.359022 4_2:-1944543 None:intergenic
ACAATATTCATGACCCAAAC+TGG 0.359706 4_2:-1947728 None:intergenic
GATGGCGGCGGAGGTGGTGG+TGG 0.359751 4_2:-1944406 None:intergenic
TTGCAATGAATATGATTAGT+AGG 0.361054 4_2:-1946822 None:intergenic
AGGAAGAAAGAGAGAGAAAG+AGG 0.367208 4_2:-1944110 None:intergenic
GCTCACGTTGCCTAATTCCT+TGG 0.368109 4_2:+1946482 Msa0583390:CDS
GGTGGCCTGAGAGCCGTGAT+TGG 0.371034 4_2:+1944748 Msa0583390:CDS
AAAGAATTAGCCATTGTTGT+TGG 0.377603 4_2:-1944270 None:intergenic
CAATGATTGATGATCCAGTT+TGG 0.380101 4_2:+1947714 Msa0583390:CDS
AGTCTTGAGAGAGGTTTGTT+GGG 0.382054 4_2:-1944315 None:intergenic
GAGTCTTGAGAGAGGTTTGT+TGG 0.382542 4_2:-1944316 None:intergenic
GCCGGAGATGGCGGCGGAGG+TGG 0.383733 4_2:-1944412 None:intergenic
AAATTAGTTTGTGGGCAATC+AGG 0.386232 4_2:-1944465 None:intergenic
GGCGGCGGAGGTGGTGGTGG+AGG 0.387506 4_2:-1944403 None:intergenic
ACCGCTTTAGACACCGGTTG+TGG 0.389827 4_2:+1944951 Msa0583390:CDS
CGAGGAGTTCCAGCTTTGAT+TGG 0.389949 4_2:+1946403 Msa0583390:CDS
CGGAGAGAAAGAGAAAGAAA+AGG 0.393918 4_2:-1944237 None:intergenic
TTGGGTCATGAATATTGTTC+CGG 0.398019 4_2:+1947733 Msa0583390:CDS
GTGGTGGAGGATTGTCCAAT+TGG 0.413518 4_2:+1947492 Msa0583390:CDS
ACTTGATATGAATGCTTACA+TGG 0.416586 4_2:+1947676 Msa0583390:CDS
CGGTTCAGGTTTCCTGGTGG+TGG 0.418362 4_2:+1944849 Msa0583390:CDS
GGAGATGGCGGCGGAGGTGG+TGG 0.420969 4_2:-1944409 None:intergenic
GGTATGTGACGTCGGTTTAT+CGG 0.428548 4_2:+1944584 Msa0583390:CDS
GGAACTGATGTTAGTCTCTC+AGG 0.432324 4_2:-1947515 None:intergenic
AAACTCATCAACCTTAAAGA+TGG 0.440201 4_2:+1944918 Msa0583390:CDS
CAATAAATTGGGAGAGCCAT+TGG 0.441065 4_2:+1946679 Msa0583390:CDS
AGGATCCTTTGCATCACAAA+AGG 0.443703 4_2:-1946874 None:intergenic
TGTTAGTCTCTCAGGCCAAT+TGG 0.446702 4_2:-1947507 None:intergenic
TCAATCGTCAATTCTTTATG+TGG 0.449181 4_2:-1944789 None:intergenic
CGCTGCGGATTCTGGTGGGT+CGG 0.450044 4_2:-1944544 None:intergenic
GGCGGAATGCGGTAGCCATA+TGG 0.458498 4_2:-1944723 None:intergenic
GTATATTACCATGCTGAGTC+AGG 0.460310 4_2:-1946894 None:intergenic
GGAGAGAAAGAGAAAGAAAA+GGG 0.460567 4_2:-1944236 None:intergenic
GGTGCATACATTGATGATAT+CGG 0.460690 4_2:+1944894 Msa0583390:CDS
TGATTATCAGCTAGCAGAGC+CGG 0.461365 4_2:+1947637 Msa0583390:CDS
CATTCATATCAAGTAAATTA+CGG 0.462099 4_2:-1947667 None:intergenic
TGCTACGTCCTGGAGGGTAT+TGG 0.462923 4_2:+1946640 Msa0583390:CDS
AGAAGGGTGACATTGCAATA+TGG 0.465380 4_2:+1946793 Msa0583390:CDS
ATCAGCATGTATAAAGTCAT+AGG 0.466475 4_2:-1948488 None:intergenic
CTGAGAGCCGTGATTGGGCT+TGG 0.467893 4_2:+1944754 Msa0583390:CDS
ATCAGGGCCACCAATAAATT+GGG 0.468994 4_2:+1946668 Msa0583390:CDS
TCCAACCCCATTTATGTGGG+TGG 0.470520 4_2:+1948989 Msa0583390:three_prime_UTR
GTGGCCTGAGAGCCGTGATT+GGG 0.470858 4_2:+1944749 Msa0583390:CDS
CATGAATATTGTTCCGGTCC+AGG 0.471627 4_2:+1947739 Msa0583390:CDS
ACCACCTCCGCCGCCATCTC+CGG 0.471918 4_2:+1944411 Msa0583390:CDS
TCAAAGAAAATACCGAGTTA+TGG 0.474678 4_2:+1947585 Msa0583390:CDS
GAGGGTTTAGTTTGGACTGA+GGG 0.476226 4_2:-1944091 None:intergenic
ACGTATATATAGAGAGAGAA+AGG 0.476648 4_2:-1944134 None:intergenic
GATTCTCCGGTGTCGGATAC+CGG 0.478052 4_2:+1944698 Msa0583390:CDS
GATTATCAGCTAGCAGAGCC+GGG 0.479427 4_2:+1947638 Msa0583390:CDS
GCCATGTCAAAGGCTCTTGA+AGG 0.481184 4_2:-1946454 None:intergenic
GCCATTGGAAAGGGTGGGAG+AGG 0.486448 4_2:+1946694 Msa0583390:CDS
GGTGGAGTGGTGATTATTGC+CGG 0.486771 4_2:-1944430 None:intergenic
TGATCGGAACATATCAGAAC+TGG 0.488249 4_2:+1947801 Msa0583390:CDS
TAGAATTGCAGACCATGAAA+AGG 0.489139 4_2:+1948784 Msa0583390:CDS
GTTTATGAACGCGGATTGAT+CGG 0.489841 4_2:+1947785 Msa0583390:CDS
CAAGCCCAATCACGGCTCTC+AGG 0.490524 4_2:-1944753 None:intergenic
ACATTCTTCTTGAGATGGAT+AGG 0.492398 4_2:+1948669 Msa0583390:CDS
TTGTAGCAGTCAAGCAGTAT+TGG 0.492709 4_2:+1948831 Msa0583390:CDS
ATATATAGAGAGAGAAAGGA+AGG 0.493536 4_2:-1944130 None:intergenic
TGGCTCTCCCAATTTATTGG+TGG 0.493582 4_2:-1946675 None:intergenic
TGAGCTTCATGTGTATCTCT+TGG 0.497157 4_2:-1946361 None:intergenic
CACCACCAGGAAACCTGAAC+CGG 0.497526 4_2:-1944848 None:intergenic
CTGCGGATTCTGGTGGGTCG+GGG 0.498213 4_2:-1944542 None:intergenic
CCGCTTTAGACACCGGTTGT+GGG 0.499535 4_2:+1944952 Msa0583390:CDS
ATTGCCGGAGATGGCGGCGG+AGG 0.500209 4_2:-1944415 None:intergenic
AATGATTGATGATCCAGTTT+GGG 0.502411 4_2:+1947715 Msa0583390:CDS
ATAAAAGAAGTTAGTGGTGG+AGG 0.502506 4_2:+1947479 Msa0583390:CDS
GAGACACTGTCCGGAGAAAG+AGG 0.505810 4_2:+1944674 Msa0583390:CDS
AGCGGTCGTTGAAATTTCCT+CGG 0.506218 4_2:+1944631 Msa0583390:CDS
GTTGATAGAGTGCTACGTCC+TGG 0.506357 4_2:+1946630 Msa0583390:CDS
CAATTTACCTGTCCTCATAG+AGG 0.506394 4_2:-1948522 None:intergenic
CTAATTCCTTGGGGCCAGAA+TGG 0.507755 4_2:+1946493 Msa0583390:CDS
GTCATAGGTTCGAGGATAAG+TGG 0.507789 4_2:-1948473 None:intergenic
ACCATGTTTCCACGTGGCGC+TGG 0.508694 4_2:+1944873 Msa0583390:CDS
CGGAGAATCTCCTCTTTCTC+CGG 0.508889 4_2:-1944684 None:intergenic
GAATTAATCAGGTTGCAAGT+TGG 0.509111 4_2:+1946293 Msa0583390:intron
ATTAGCAGTGGAAGTTTGGA+TGG 0.509258 4_2:+1947545 Msa0583390:CDS
TTGGTGTCATTGCCACAATT+AGG 0.510592 4_2:+1946422 Msa0583390:CDS
TCCTCTCCCACCCTTTCCAA+TGG 0.515898 4_2:-1946695 None:intergenic
TGGGCAATCAGGGCGGATGA+TGG 0.516410 4_2:-1944454 None:intergenic
AGAGGACATTCTTCTTGAGA+TGG 0.516456 4_2:+1948664 Msa0583390:CDS
AGAAAGTAGAGTCTTGAGAG+AGG 0.518829 4_2:-1944324 None:intergenic
ATGTCAGATACCTCAGGAAG+TGG 0.522438 4_2:-1947458 None:intergenic
TGGAGGTGAAATTAGTTTGT+GGG 0.527107 4_2:-1944473 None:intergenic
TTGTTGTTGGATAAAGAAAA+CGG 0.527945 4_2:-1944257 None:intergenic
GGTTCAGGTTTCCTGGTGGT+GGG 0.530907 4_2:+1944850 Msa0583390:CDS
AAACTTCCACTGCTAATCCT+TGG 0.531039 4_2:-1947539 None:intergenic
ATTGGGAGAGCCATTGGAAA+GGG 0.532321 4_2:+1946685 Msa0583390:CDS
AACTCATCAACCTTAAAGAT+GGG 0.532726 4_2:+1944919 Msa0583390:CDS
TGATGTGGATGTGTTGTTGA+AGG 0.534088 4_2:+1948727 Msa0583390:CDS
CGCTTTAGACACCGGTTGTG+GGG 0.535671 4_2:+1944953 Msa0583390:CDS
TCTGACATAAAAGAAGTTAG+TGG 0.535713 4_2:+1947473 Msa0583390:CDS
AATTAGTTTGTGGGCAATCA+GGG 0.536410 4_2:-1944464 None:intergenic
TGGGTCGGGGACGTTATGAT+GGG 0.536486 4_2:-1944529 None:intergenic
GCGGTCGTTGAAATTTCCTC+GGG 0.540278 4_2:+1944632 Msa0583390:CDS
ATCAGGGCGGATGATGGTGG+TGG 0.540450 4_2:-1944448 None:intergenic
GGCGGATGATGGTGGTGGAG+TGG 0.540502 4_2:-1944443 None:intergenic
AGAATTGCAGACCATGAAAA+GGG 0.540625 4_2:+1948785 Msa0583390:CDS
TCAAAGGCTCTTGAAGGGTA+AGG 0.540759 4_2:-1946448 None:intergenic
CGGAGAAAGAGGAGATTCTC+CGG 0.542225 4_2:+1944685 Msa0583390:CDS
ACCACCCACATAAATGGGGT+TGG 0.543751 4_2:-1948990 None:intergenic
GCAATCAGGGCGGATGATGG+TGG 0.544035 4_2:-1944451 None:intergenic
ATTAATCAGGTTGCAAGTTG+GGG 0.545923 4_2:+1946295 Msa0583390:intron
GTCCGAACCGCTTTAGACAC+CGG 0.546098 4_2:+1944945 Msa0583390:CDS
CTTCCACTGCTAATCCTTGG+TGG 0.547020 4_2:-1947536 None:intergenic
ACCAGCGCCACGTGGAAACA+TGG 0.547702 4_2:-1944874 None:intergenic
AACCGGTGTCTAAAGCGGTT+CGG 0.547844 4_2:-1944947 None:intergenic
GTGTTGATCTCAGCCTGGAC+CGG 0.550617 4_2:-1947752 None:intergenic
AGAGGGTTTAGTTTGGACTG+AGG 0.551393 4_2:-1944092 None:intergenic
CAGGCCACCGCGGCGGAATG+CGG 0.551601 4_2:-1944734 None:intergenic
GCAATGACACCAATCAAAGC+TGG 0.552228 4_2:-1946412 None:intergenic
ACACGCGCTGCGGATTCTGG+TGG 0.554767 4_2:-1944549 None:intergenic
AATTTACCTGTCCTCATAGA+GGG 0.556718 4_2:-1948521 None:intergenic
GGAAACATGGTCCCACCACC+AGG 0.557115 4_2:-1944861 None:intergenic
GGAAGAAAGAGAGAGAAAGA+GGG 0.557775 4_2:-1944109 None:intergenic
CAAATCTTAAGAAGACCAAA+AGG 0.559693 4_2:-1948905 None:intergenic
GTGTGACAGATGTAATATAG+AGG 0.560024 4_2:+1948646 Msa0583390:intron
GTGGAGGTGAAATTAGTTTG+TGG 0.561988 4_2:-1944474 None:intergenic
TCATTGCAAAATAACAAGAA+AGG 0.562481 4_2:+1946836 Msa0583390:CDS
TGTCGGATACCGGCACCATA+TGG 0.563020 4_2:+1944708 Msa0583390:CDS
CGCGTTAGTCACACGCGCTG+CGG 0.563602 4_2:-1944559 None:intergenic
CACGCGCTGCGGATTCTGGT+GGG 0.563714 4_2:-1944548 None:intergenic
TTATCGTGAGAGACACTGTC+CGG 0.564748 4_2:+1944665 Msa0583390:CDS
GAGAAAGAGAAAGAAAAGGG+TGG 0.565117 4_2:-1944233 None:intergenic
TTGAGATGGATAGGATATTG+AGG 0.565653 4_2:+1948678 Msa0583390:CDS
GGATCCTTTGCATCACAAAA+GGG 0.566364 4_2:-1946873 None:intergenic
ATTATTGCCGGAGATGGCGG+CGG 0.566393 4_2:-1944418 None:intergenic
GTGGTGATTATTGCCGGAGA+TGG 0.566414 4_2:-1944424 None:intergenic
CCCTTCAAGAGCCTTTGACA+TGG 0.567074 4_2:+1946453 Msa0583390:CDS
ATTTGCAGATGCAATGCAAT+GGG 0.567404 4_2:+1948757 Msa0583390:CDS
GTGATTATTGCCGGAGATGG+CGG 0.568861 4_2:-1944421 None:intergenic
CGCAATATCACACTCCCTTG+TGG 0.570708 4_2:-1948701 None:intergenic
GGGAGAGCCATTGGAAAGGG+TGG 0.572041 4_2:+1946688 Msa0583390:CDS
TTTACAAATTCATCAAGCAA+AGG 0.572771 4_2:-1949160 None:intergenic
TGTGATATTGCGTGATGATG+TGG 0.575145 4_2:+1948712 Msa0583390:CDS
GATAGGATATTGAGGCCACA+AGG 0.581622 4_2:+1948686 Msa0583390:CDS
GATAAACCGACGTCACATAC+CGG 0.584172 4_2:-1944582 None:intergenic
CTTGATATGAATGCTTACAT+GGG 0.587393 4_2:+1947677 Msa0583390:CDS
GATTTGCAGATGCAATGCAA+TGG 0.589141 4_2:+1948756 Msa0583390:CDS
CAGGCTGAGATCAACACACT+TGG 0.589859 4_2:+1947758 Msa0583390:CDS
GATAGAATCCAATACCCTCC+AGG 0.591531 4_2:-1946648 None:intergenic
GATATGAATGCTTACATGGG+AGG 0.592658 4_2:+1947680 Msa0583390:CDS
GACCGCTGCACGTCCTCACA+CGG 0.592771 4_2:-1944615 None:intergenic
TATTTACCATTCTGGCCCCA+AGG 0.593811 4_2:-1946499 None:intergenic
AACTCTCTTCTTCCATAACT+CGG 0.594085 4_2:-1947597 None:intergenic
AAGAGGAGATTCTCCGGTGT+CGG 0.594261 4_2:+1944691 Msa0583390:CDS
GACATAAAAGAAGTTAGTGG+TGG 0.594804 4_2:+1947476 Msa0583390:CDS
AGGGTTTAGTTTGGACTGAG+GGG 0.599146 4_2:-1944090 None:intergenic
CAAAGGATCCTGACTCAGCA+TGG 0.601524 4_2:+1946886 Msa0583390:CDS
GAGGGTATTGGATTCTATCA+GGG 0.605036 4_2:+1946652 Msa0583390:CDS
CAAGTGTGTTGATCTCAGCC+TGG 0.607724 4_2:-1947757 None:intergenic
AGCGCGTGTGACTAACGCGC+CGG 0.610056 4_2:+1944563 Msa0583390:CDS
AATTGGGAGAGCCATTGGAA+AGG 0.610487 4_2:+1946684 Msa0583390:CDS
AGTAAATTACGGTATCTCCC+CGG 0.611082 4_2:-1947656 None:intergenic
AAGCGTGATGGAAGAAGTAG+TGG 0.611496 4_2:-1944496 None:intergenic
GATGGAAGAAGTAGTGGTGG+AGG 0.612403 4_2:-1944490 None:intergenic
CCATGTCAAAGGCTCTTGAA+GGG 0.615041 4_2:-1946453 None:intergenic
CATGAAACAAGTAACGTCCA+TGG 0.615898 4_2:+1944183 Msa0583390:five_prime_UTR
TAGCATACCAAGCCCAATCA+CGG 0.616099 4_2:-1944761 None:intergenic
TGAGCAATGAGCCATGTCAA+AGG 0.616646 4_2:-1946464 None:intergenic
ATGCGGTAGCCATATGGTGC+CGG 0.617366 4_2:-1944717 None:intergenic
ACAGACTTCAATTGAGAGAG+TGG 0.617914 4_2:+1946740 Msa0583390:CDS
GGAGAGCCATTGGAAAGGGT+GGG 0.618351 4_2:+1946689 Msa0583390:CDS
TCACGTTGCCTAATTCCTTG+GGG 0.618705 4_2:+1946484 Msa0583390:CDS
GTTCAATTTGCTCTTGAACG+AGG 0.620941 4_2:+1946385 Msa0583390:CDS
ATGTTTGACACCACTTCCTG+AGG 0.623014 4_2:+1947448 Msa0583390:CDS
CTTGGTGTCGTTTATGAACG+CGG 0.623640 4_2:+1947776 Msa0583390:CDS
ATGGTGCCGGTATCCGACAC+CGG 0.623922 4_2:-1944704 None:intergenic
CGGCTCTCAGGCCACCGCGG+CGG 0.628544 4_2:-1944741 None:intergenic
CTCCGTGTGAGGACGTGCAG+CGG 0.628570 4_2:+1944613 Msa0583390:CDS
CGTGATGGAAGAAGTAGTGG+TGG 0.629415 4_2:-1944493 None:intergenic
CGATAAATTAAATTCTCCCG+AGG 0.629535 4_2:-1944648 None:intergenic
CAATCAGCTATATGAAACCA+TGG 0.635286 4_2:-1944200 None:intergenic
TGTATAAAGTCATAGGTTCG+AGG 0.642463 4_2:-1948481 None:intergenic
ATAGAGTGCTACGTCCTGGA+GGG 0.642534 4_2:+1946634 Msa0583390:CDS
TCACGGCTCTCAGGCCACCG+CGG 0.646633 4_2:-1944744 None:intergenic
CCCACAACCGGTGTCTAAAG+CGG 0.650759 4_2:-1944952 None:intergenic
GGTGTCTAAAGCGGTTCGGA+CGG 0.653499 4_2:-1944943 None:intergenic
ATGTATGCACCAGCGCCACG+TGG 0.656665 4_2:-1944882 None:intergenic
GGTTCGAGGATAAGTGGACA+TGG 0.656711 4_2:-1948467 None:intergenic
CTTGTTTCATGAGAGTGACG+CGG 0.657630 4_2:-1944171 None:intergenic
GCAAACCACCCACATAAATG+GGG 0.658901 4_2:-1948994 None:intergenic
GTTCCACCAAGGATTAGCAG+TGG 0.659990 4_2:+1947533 Msa0583390:CDS
GATAGAGTGCTACGTCCTGG+AGG 0.664230 4_2:+1946633 Msa0583390:CDS
GGTGCAGAGGATGATGGTGA+AGG 0.675786 4_2:-1944349 None:intergenic
ATTATCAGCTAGCAGAGCCG+GGG 0.679309 4_2:+1947639 Msa0583390:CDS
AACGCGCCGGTATGTGACGT+CGG 0.682271 4_2:+1944576 Msa0583390:CDS
ATCGGAGTATACTCCGTGTG+AGG 0.687381 4_2:+1944602 Msa0583390:CDS
GCTACCGCATTCCGCCGCGG+TGG 0.688347 4_2:+1944730 Msa0583390:CDS
TAGTTTGTGGGCAATCAGGG+CGG 0.688675 4_2:-1944461 None:intergenic
GACACTGCTAATATGTCACG+TGG 0.691648 4_2:-1946331 None:intergenic
GACTAACATCAGTTCCACCA+AGG 0.691717 4_2:+1947522 Msa0583390:CDS
GACCGGTTCAGGTTTCCTGG+TGG 0.693052 4_2:+1944846 Msa0583390:CDS
AGGGTGGGAGAGGACTCGTG+AGG 0.694135 4_2:+1946704 Msa0583390:CDS
ATGGCTACCGCATTCCGCCG+CGG 0.698700 4_2:+1944727 Msa0583390:CDS
ATAGGATATTGAGGCCACAA+GGG 0.708060 4_2:+1948687 Msa0583390:CDS
AGGGTAAGGAAGCCTAATTG+TGG 0.711879 4_2:-1946434 None:intergenic
GGTGGGACCATGTTTCCACG+TGG 0.790969 4_2:+1944867 Msa0583390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTCAATTAACTTTTTT+AGG + chr4_2:1945178-1945197 Msa0583390:intron 10.0%
!!! TTTATAAATGTATATGATTT+TGG + chr4_2:1945368-1945387 Msa0583390:intron 10.0%
!!! ATGAAAATTGTATATAATTT+TGG + chr4_2:1945405-1945424 Msa0583390:intron 10.0%
!!! TAAGTTACAAATATTTTAAT+TGG + chr4_2:1946248-1946267 Msa0583390:intron 10.0%
!!! ATAAATTATTTTTTTTGGAA+TGG - chr4_2:1947337-1947356 None:intergenic 10.0%
!!! GTTAATTGAAATTTTTCAAT+TGG - chr4_2:1945172-1945191 None:intergenic 15.0%
!! TTTAAACACTAAACTAAAAA+TGG + chr4_2:1945677-1945696 Msa0583390:intron 15.0%
!! ATGTTATAATTCGATATATA+TGG + chr4_2:1945702-1945721 Msa0583390:intron 15.0%
!! AATTGATATATAGTTAGTTA+AGG + chr4_2:1945770-1945789 Msa0583390:intron 15.0%
!!! CTAAATTGTATTTTTTTTGA+AGG + chr4_2:1946003-1946022 Msa0583390:intron 15.0%
!! ATATTTAAAAGAATAGGAAA+AGG - chr4_2:1946919-1946938 None:intergenic 15.0%
!!! TAATCTATTTATTTGTTAGT+TGG + chr4_2:1947274-1947293 Msa0583390:intron 15.0%
!!! AATTTTCTTTTCTTCATTTT+AGG + chr4_2:1947408-1947427 Msa0583390:intron 15.0%
!!! TATTTACCTTTCTTTAAAAT+TGG - chr4_2:1947897-1947916 None:intergenic 15.0%
!! ACTTTAAATTTAATTATTGG+TGG - chr4_2:1948135-1948154 None:intergenic 15.0%
!! TGCACTTTAAATTTAATTAT+TGG - chr4_2:1948138-1948157 None:intergenic 15.0%
!!! TTATAATTTGATTTTCCTTT+TGG + chr4_2:1948890-1948909 Msa0583390:exon 15.0%
!! TTGAGAAAAAAAACCAAAAT+TGG + chr4_2:1944808-1944827 Msa0583390:CDS 20.0%
!! TGAGAAAAAAAACCAAAATT+GGG + chr4_2:1944809-1944828 Msa0583390:CDS 20.0%
!!! TTGAAATTTTTCAATTGGTT+GGG - chr4_2:1945167-1945186 None:intergenic 20.0%
!!! ATTGAAATTTTTCAATTGGT+TGG - chr4_2:1945168-1945187 None:intergenic 20.0%
!!! TTTTAGGTTGATTTTAGTTT+TGG + chr4_2:1945194-1945213 Msa0583390:intron 20.0%
!! AGAAAAATAAAGTCAAATGT+AGG - chr4_2:1945534-1945553 None:intergenic 20.0%
!! TATATTTCAATTTCAAAGCA+TGG - chr4_2:1945729-1945748 None:intergenic 20.0%
!! AAACAATCTTCTTAAATTCT+TGG + chr4_2:1945896-1945915 Msa0583390:intron 20.0%
!! TTGAAGTTTATATTGTTTGT+TGG + chr4_2:1946093-1946112 Msa0583390:intron 20.0%
!! TGAAGTTTATATTGTTTGTT+GGG + chr4_2:1946094-1946113 Msa0583390:intron 20.0%
!! TTGTTACAATTGAATTAATC+AGG + chr4_2:1946282-1946301 Msa0583390:intron 20.0%
!! CTTTCAAATTAAAATTTGTC+GGG - chr4_2:1946540-1946559 None:intergenic 20.0%
!! GCTTTCAAATTAAAATTTGT+CGG - chr4_2:1946541-1946560 None:intergenic 20.0%
!!! TTGTTTTATGTATTTGTAGA+TGG + chr4_2:1946591-1946610 Msa0583390:intron 20.0%
!! CATTCATATCAAGTAAATTA+CGG - chr4_2:1947670-1947689 None:intergenic 20.0%
!! TTGTTGTTGGATAAAGAAAA+CGG - chr4_2:1944260-1944279 None:intergenic 25.0%
!! TTTTCTTTATCCAACAACAA+TGG + chr4_2:1944260-1944279 Msa0583390:exon 25.0%
!! TATTTAGAACGTTTGAGAAT+TGG + chr4_2:1945241-1945260 Msa0583390:intron 25.0%
! TATAGTTAGTTAAGGTATGT+TGG + chr4_2:1945778-1945797 Msa0583390:intron 25.0%
! TTGCAATGAATATGATTAGT+AGG - chr4_2:1946825-1946844 None:intergenic 25.0%
! TCATTGCAAAATAACAAGAA+AGG + chr4_2:1946836-1946855 Msa0583390:CDS 25.0%
! GTCACAATTCAATATCTTAA+AGG - chr4_2:1946951-1946970 None:intergenic 25.0%
! ACAAGTAACTAAAGAGAAAA+GGG - chr4_2:1947375-1947394 None:intergenic 25.0%
! AACAAGTAACTAAAGAGAAA+AGG - chr4_2:1947376-1947395 None:intergenic 25.0%
! TTAACAACTGCTATTAGAAA+GGG - chr4_2:1947839-1947858 None:intergenic 25.0%
!!! AACCAACCAATTTTAAAGAA+AGG + chr4_2:1947888-1947907 Msa0583390:intron 25.0%
!!! TACCTTTCTTTAAAATTGGT+TGG - chr4_2:1947893-1947912 None:intergenic 25.0%
!!! AATTTTAGTGAGCTAAGATT+AGG - chr4_2:1948162-1948181 None:intergenic 25.0%
! GATAAAGCTATACTATAAGT+GGG - chr4_2:1948259-1948278 None:intergenic 25.0%
! TCACAAAGTTATTATATGAG+TGG - chr4_2:1948615-1948634 None:intergenic 25.0%
!!! TTTCTTTGTTGATTTTGTTC+AGG - chr4_2:1948869-1948888 None:intergenic 25.0%
! AAGTTGACATGAAAAAAGAA+AGG - chr4_2:1948944-1948963 None:intergenic 25.0%
!! TCATGTCAACTTAAATTTTC+AGG + chr4_2:1948952-1948971 Msa0583390:three_prime_UTR 25.0%
!!! TAAACCCCAAACAATTTTTT+GGG - chr4_2:1949053-1949072 None:intergenic 25.0%
!!! ATAAACCCCAAACAATTTTT+TGG - chr4_2:1949054-1949073 None:intergenic 25.0%
! TTTGACAACTTTGTAATTGA+TGG - chr4_2:1949077-1949096 None:intergenic 25.0%
ATATATAGAGAGAGAAAGGA+AGG - chr4_2:1944133-1944152 None:intergenic 30.0%
ACGTATATATAGAGAGAGAA+AGG - chr4_2:1944137-1944156 None:intergenic 30.0%
AAAGAATTAGCCATTGTTGT+TGG - chr4_2:1944273-1944292 None:intergenic 30.0%
TCAATCGTCAATTCTTTATG+TGG - chr4_2:1944792-1944811 None:intergenic 30.0%
! CTTCAAAATGAACCCAATTT+TGG - chr4_2:1944824-1944843 None:intergenic 30.0%
! CAAAATTGGGTTCATTTTGA+AGG + chr4_2:1944822-1944841 Msa0583390:CDS 30.0%
AAACTCATCAACCTTAAAGA+TGG + chr4_2:1944918-1944937 Msa0583390:CDS 30.0%
AACTCATCAACCTTAAAGAT+GGG + chr4_2:1944919-1944938 Msa0583390:CDS 30.0%
TGCATGATAGTAAAAGAAAC+CGG - chr4_2:1945017-1945036 None:intergenic 30.0%
! CATTTTCAATGTCAATGAAC+CGG + chr4_2:1945047-1945066 Msa0583390:intron 30.0%
! ATTTTCAATGTCAATGAACC+GGG + chr4_2:1945048-1945067 Msa0583390:intron 30.0%
AAAGGGAATGTAGGTTAATT+GGG + chr4_2:1945264-1945283 Msa0583390:intron 30.0%
! TTTTCATAAGAAACGATTCC+TGG - chr4_2:1945346-1945365 None:intergenic 30.0%
TAATCATTGTGCAAAACAGA+CGG + chr4_2:1945428-1945447 Msa0583390:intron 30.0%
GTCTATTATTGTGACTTAGT+TGG + chr4_2:1945622-1945641 Msa0583390:intron 30.0%
CTACGAAAAGGATAGATTTA+CGG - chr4_2:1945824-1945843 None:intergenic 30.0%
CATGAAGTAACTTAGAAATC+AGG - chr4_2:1946143-1946162 None:intergenic 30.0%
TTCTAAGTTACTTCATGTTG+CGG + chr4_2:1946146-1946165 Msa0583390:intron 30.0%
! AATTAATCAGGTTGCAAGTT+GGG + chr4_2:1946294-1946313 Msa0583390:intron 30.0%
CAAGGATATATTTACCATTC+TGG - chr4_2:1946510-1946529 None:intergenic 30.0%
TTGGAAAAAACTAGTTCAGA+AGG + chr4_2:1946776-1946795 Msa0583390:CDS 30.0%
TGGAAAAAACTAGTTCAGAA+GGG + chr4_2:1946777-1946796 Msa0583390:CDS 30.0%
AAGATATTGAATTGTGACCA+CGG + chr4_2:1946953-1946972 Msa0583390:intron 30.0%
ACCAAAAAAAACTGATGTCA+CGG + chr4_2:1947051-1947070 Msa0583390:intron 30.0%
! CTTTATCATCTAAGTGGTTT+TGG - chr4_2:1947241-1947260 None:intergenic 30.0%
CAAACTCTTTATCATCTAAG+TGG - chr4_2:1947247-1947266 None:intergenic 30.0%
CAAGTAACTAAAGAGAAAAG+GGG - chr4_2:1947374-1947393 None:intergenic 30.0%
!! TCATTTTAGGTACACCAAAA+TGG + chr4_2:1947421-1947440 Msa0583390:intron 30.0%
! TGTCAAACATGTATCCATTT+TGG - chr4_2:1947438-1947457 None:intergenic 30.0%
TCTGACATAAAAGAAGTTAG+TGG + chr4_2:1947473-1947492 Msa0583390:CDS 30.0%
TCAAAGAAAATACCGAGTTA+TGG + chr4_2:1947585-1947604 Msa0583390:CDS 30.0%
ACTTGATATGAATGCTTACA+TGG + chr4_2:1947676-1947695 Msa0583390:CDS 30.0%
CTTGATATGAATGCTTACAT+GGG + chr4_2:1947677-1947696 Msa0583390:CDS 30.0%
! AATGATTGATGATCCAGTTT+GGG + chr4_2:1947715-1947734 Msa0583390:CDS 30.0%
GTTAACAACTGCTATTAGAA+AGG - chr4_2:1947840-1947859 None:intergenic 30.0%
TCTAATAGCAGTTGTTAACT+AGG + chr4_2:1947841-1947860 Msa0583390:intron 30.0%
CTGATTACAAAAAATGAGAG+AGG + chr4_2:1947981-1948000 Msa0583390:intron 30.0%
! AGCTCACTAAAATTTAGAGT+TGG + chr4_2:1948168-1948187 Msa0583390:intron 30.0%
! ACTTTATAACTGTGCACTTT+TGG + chr4_2:1948194-1948213 Msa0583390:intron 30.0%
CGATAAAGCTATACTATAAG+TGG - chr4_2:1948260-1948279 None:intergenic 30.0%
CTATTGTCAAGGACAAAATT+AGG - chr4_2:1948330-1948349 None:intergenic 30.0%
! CAATTTTCTGTCTATTGTCA+AGG - chr4_2:1948341-1948360 None:intergenic 30.0%
ATCAGCATGTATAAAGTCAT+AGG - chr4_2:1948491-1948510 None:intergenic 30.0%
GGACAGGTAAATTGTAAAAT+TGG + chr4_2:1948531-1948550 Msa0583390:intron 30.0%
! CTACAAGTATCTTTTCTCTT+TGG - chr4_2:1948817-1948836 None:intergenic 30.0%
CAAATCTTAAGAAGACCAAA+AGG - chr4_2:1948908-1948927 None:intergenic 30.0%
ATTGACCCCAAAAAATTGTT+TGG + chr4_2:1949044-1949063 Msa0583390:three_prime_UTR 30.0%
TTGACCCCAAAAAATTGTTT+GGG + chr4_2:1949045-1949064 Msa0583390:three_prime_UTR 30.0%
!!! AAACCCCAAACAATTTTTTG+GGG - chr4_2:1949052-1949071 None:intergenic 30.0%
CAATCAGCTATATGAAACCA+TGG - chr4_2:1944203-1944222 None:intergenic 35.0%
GGAGAGAAAGAGAAAGAAAA+GGG - chr4_2:1944239-1944258 None:intergenic 35.0%
!! AATTAGTTTGTGGGCAATCA+GGG - chr4_2:1944467-1944486 None:intergenic 35.0%
!! AAATTAGTTTGTGGGCAATC+AGG - chr4_2:1944468-1944487 None:intergenic 35.0%
!! TGGAGGTGAAATTAGTTTGT+GGG - chr4_2:1944476-1944495 None:intergenic 35.0%
CGATAAATTAAATTCTCCCG+AGG - chr4_2:1944651-1944670 None:intergenic 35.0%
! GGTGCATACATTGATGATAT+CGG + chr4_2:1944894-1944913 Msa0583390:CDS 35.0%
GGTTCAAGAAAACTTAAACC+GGG - chr4_2:1944996-1945015 None:intergenic 35.0%
CGGTTCAAGAAAACTTAAAC+CGG - chr4_2:1944997-1945016 None:intergenic 35.0%
!! CGGTTTAAGTTTTCTTGAAC+CGG + chr4_2:1944995-1945014 Msa0583390:intron 35.0%
TTGTTGAACTAACCATAGAG+GGG - chr4_2:1945084-1945103 None:intergenic 35.0%
GTTGTTGAACTAACCATAGA+GGG - chr4_2:1945085-1945104 None:intergenic 35.0%
TGTTGTTGAACTAACCATAG+AGG - chr4_2:1945086-1945105 None:intergenic 35.0%
TAGAAAAATGAACCATGAGC+AGG + chr4_2:1945110-1945129 Msa0583390:intron 35.0%
AGAACGTTTGAGAATTGGAA+AGG + chr4_2:1945246-1945265 Msa0583390:intron 35.0%
GAACGTTTGAGAATTGGAAA+GGG + chr4_2:1945247-1945266 Msa0583390:intron 35.0%
GAAAGGGAATGTAGGTTAAT+TGG + chr4_2:1945263-1945282 Msa0583390:intron 35.0%
AATCATTGTGCAAAACAGAC+GGG + chr4_2:1945429-1945448 Msa0583390:intron 35.0%
GAAAATTTCGTCACGTCTAT+AGG - chr4_2:1945657-1945676 None:intergenic 35.0%
! TCCTTTTCGTAGAGAGAAAA+AGG + chr4_2:1945832-1945851 Msa0583390:intron 35.0%
! CCTTTTCGTAGAGAGAAAAA+GGG + chr4_2:1945833-1945852 Msa0583390:intron 35.0%
! CTTTTCGTAGAGAGAAAAAG+GGG + chr4_2:1945834-1945853 Msa0583390:intron 35.0%
AGAGAAAAAGGGGAACATAT+AGG + chr4_2:1945844-1945863 Msa0583390:intron 35.0%
!! GCACAAATTTGTTGTATCAC+TGG + chr4_2:1946192-1946211 Msa0583390:intron 35.0%
! GAATTAATCAGGTTGCAAGT+TGG + chr4_2:1946293-1946312 Msa0583390:intron 35.0%
! ATTAATCAGGTTGCAAGTTG+GGG + chr4_2:1946295-1946314 Msa0583390:intron 35.0%
GTTTGTGATCGTTAAGATTG+CGG + chr4_2:1946999-1947018 Msa0583390:intron 35.0%
! GTTAAGATTGCGGAGAATTT+TGG + chr4_2:1947009-1947028 Msa0583390:intron 35.0%
TTGGTCAAATGAGACTGATA+TGG + chr4_2:1947028-1947047 Msa0583390:intron 35.0%
!!! ACCGTGACATCAGTTTTTTT+TGG - chr4_2:1947055-1947074 None:intergenic 35.0%
!!! GGTCGCGGATTTTTTTTATA+AGG + chr4_2:1947072-1947091 Msa0583390:intron 35.0%
TATCACTGCCAAACTCTATT+TGG - chr4_2:1947218-1947237 None:intergenic 35.0%
! TTTATGCACCTTTTCGAAAG+TGG + chr4_2:1947297-1947316 Msa0583390:intron 35.0%
AAGAATCTCCACTTTCGAAA+AGG - chr4_2:1947308-1947327 None:intergenic 35.0%
! TCGAAAGTGGAGATTCTTTT+TGG + chr4_2:1947310-1947329 Msa0583390:intron 35.0%
! TCTTTTATGTCAGATACCTC+AGG - chr4_2:1947467-1947486 None:intergenic 35.0%
GACATAAAAGAAGTTAGTGG+TGG + chr4_2:1947476-1947495 Msa0583390:CDS 35.0%
ATAAAAGAAGTTAGTGGTGG+AGG + chr4_2:1947479-1947498 Msa0583390:CDS 35.0%
AACTCTCTTCTTCCATAACT+CGG - chr4_2:1947600-1947619 None:intergenic 35.0%
! CAATGATTGATGATCCAGTT+TGG + chr4_2:1947714-1947733 Msa0583390:CDS 35.0%
ACAATATTCATGACCCAAAC+TGG - chr4_2:1947731-1947750 None:intergenic 35.0%
TTGGGTCATGAATATTGTTC+CGG + chr4_2:1947733-1947752 Msa0583390:CDS 35.0%
!! AAATGAGAGAGGTTTGCTAA+AGG + chr4_2:1947992-1948011 Msa0583390:intron 35.0%
! TTATAACTGTGCACTTTTGG+AGG + chr4_2:1948197-1948216 Msa0583390:intron 35.0%
GCTTTACACATTTCATCACA+TGG + chr4_2:1948390-1948409 Msa0583390:intron 35.0%
TGTATAAAGTCATAGGTTCG+AGG - chr4_2:1948484-1948503 None:intergenic 35.0%
! TTCTCTTTTTACCCTCTATG+AGG + chr4_2:1948510-1948529 Msa0583390:CDS 35.0%
AATTTACCTGTCCTCATAGA+GGG - chr4_2:1948524-1948543 None:intergenic 35.0%
GTGTGACAGATGTAATATAG+AGG + chr4_2:1948646-1948665 Msa0583390:intron 35.0%
ACATTCTTCTTGAGATGGAT+AGG + chr4_2:1948669-1948688 Msa0583390:CDS 35.0%
TTGAGATGGATAGGATATTG+AGG + chr4_2:1948678-1948697 Msa0583390:CDS 35.0%
ATTTGCAGATGCAATGCAAT+GGG + chr4_2:1948757-1948776 Msa0583390:CDS 35.0%
TAGAATTGCAGACCATGAAA+AGG + chr4_2:1948784-1948803 Msa0583390:CDS 35.0%
AGAATTGCAGACCATGAAAA+GGG + chr4_2:1948785-1948804 Msa0583390:CDS 35.0%
! AGTATCTTTTCTCTTTGGTG+TGG - chr4_2:1948812-1948831 None:intergenic 35.0%
!!! TTGATTTTGTTCAGGTTGTG+GGG - chr4_2:1948861-1948880 None:intergenic 35.0%
!!! GTTGATTTTGTTCAGGTTGT+GGG - chr4_2:1948862-1948881 None:intergenic 35.0%
!!! TGTTGATTTTGTTCAGGTTG+TGG - chr4_2:1948863-1948882 None:intergenic 35.0%
! TTTTCCAACCCCATTTATGT+GGG + chr4_2:1948986-1949005 Msa0583390:three_prime_UTR 35.0%
TGACCCCAAAAAATTGTTTG+GGG + chr4_2:1949046-1949065 Msa0583390:three_prime_UTR 35.0%
GAGAGAAAGAGGGTTTAGTT+TGG - chr4_2:1944102-1944121 None:intergenic 40.0%
GGAAGAAAGAGAGAGAAAGA+GGG - chr4_2:1944112-1944131 None:intergenic 40.0%
AGGAAGAAAGAGAGAGAAAG+AGG - chr4_2:1944113-1944132 None:intergenic 40.0%
CATGAAACAAGTAACGTCCA+TGG + chr4_2:1944183-1944202 Msa0583390:five_prime_UTR 40.0%
GAGAAAGAGAAAGAAAAGGG+TGG - chr4_2:1944236-1944255 None:intergenic 40.0%
CGGAGAGAAAGAGAAAGAAA+AGG - chr4_2:1944240-1944259 None:intergenic 40.0%
! AGTCTTGAGAGAGGTTTGTT+GGG - chr4_2:1944318-1944337 None:intergenic 40.0%
AGAAAGTAGAGTCTTGAGAG+AGG - chr4_2:1944327-1944346 None:intergenic 40.0%
! AAAAAAGGTGCAGAGGATGA+TGG - chr4_2:1944358-1944377 None:intergenic 40.0%
!!! TGCACCTTTTTTTACCTCCT+TGG + chr4_2:1944366-1944385 Msa0583390:CDS 40.0%
! GTGGAGGTGAAATTAGTTTG+TGG - chr4_2:1944477-1944496 None:intergenic 40.0%
! GTACGTTTTTCTTGAACTCC+CGG + chr4_2:1944975-1944994 Msa0583390:intron 40.0%
TTGGGTCCAAACCTTGAATA+GGG - chr4_2:1945149-1945168 None:intergenic 40.0%
GAGAATTGGAAAGGGAATGT+AGG + chr4_2:1945255-1945274 Msa0583390:intron 40.0%
TTCTTTCCTTAGTTGCTTCC+AGG + chr4_2:1945325-1945344 Msa0583390:intron 40.0%
! CCCTTTTTCTCTCTACGAAA+AGG - chr4_2:1945836-1945855 None:intergenic 40.0%
TGAGCTTCATGTGTATCTCT+TGG - chr4_2:1946364-1946383 None:intergenic 40.0%
! GTTCAATTTGCTCTTGAACG+AGG + chr4_2:1946385-1946404 Msa0583390:CDS 40.0%
!! TTGGTGTCATTGCCACAATT+AGG + chr4_2:1946422-1946441 Msa0583390:CDS 40.0%
!! GAGGGTATTGGATTCTATCA+GGG + chr4_2:1946652-1946671 Msa0583390:CDS 40.0%
TATCAGGGCCACCAATAAAT+TGG + chr4_2:1946667-1946686 Msa0583390:CDS 40.0%
ATCAGGGCCACCAATAAATT+GGG + chr4_2:1946668-1946687 Msa0583390:CDS 40.0%
CAATGGCTCTCCCAATTTAT+TGG - chr4_2:1946681-1946700 None:intergenic 40.0%
CAATAAATTGGGAGAGCCAT+TGG + chr4_2:1946679-1946698 Msa0583390:CDS 40.0%
ACAGACTTCAATTGAGAGAG+TGG + chr4_2:1946740-1946759 Msa0583390:CDS 40.0%
GAGTGGCAAAAAGTCTTTGT+TGG + chr4_2:1946757-1946776 Msa0583390:CDS 40.0%
AGAAGGGTGACATTGCAATA+TGG + chr4_2:1946793-1946812 Msa0583390:CDS 40.0%
! TAGACCCTTTTGTGATGCAA+AGG + chr4_2:1946869-1946888 Msa0583390:CDS 40.0%
GGATCCTTTGCATCACAAAA+GGG - chr4_2:1946876-1946895 None:intergenic 40.0%
AGGATCCTTTGCATCACAAA+AGG - chr4_2:1946877-1946896 None:intergenic 40.0%
GTATATTACCATGCTGAGTC+AGG - chr4_2:1946897-1946916 None:intergenic 40.0%
AAACTTCCACTGCTAATCCT+TGG - chr4_2:1947542-1947561 None:intergenic 40.0%
! AAGGATTAGCAGTGGAAGTT+TGG + chr4_2:1947541-1947560 Msa0583390:CDS 40.0%
ATTAGCAGTGGAAGTTTGGA+TGG + chr4_2:1947545-1947564 Msa0583390:CDS 40.0%
AGTAAATTACGGTATCTCCC+CGG - chr4_2:1947659-1947678 None:intergenic 40.0%
GATATGAATGCTTACATGGG+AGG + chr4_2:1947680-1947699 Msa0583390:CDS 40.0%
! GTTTATGAACGCGGATTGAT+CGG + chr4_2:1947785-1947804 Msa0583390:CDS 40.0%
TGATCGGAACATATCAGAAC+TGG + chr4_2:1947801-1947820 Msa0583390:CDS 40.0%
! TTTTTACCCTCTATGAGGAC+AGG + chr4_2:1948515-1948534 Msa0583390:CDS 40.0%
CAATTTACCTGTCCTCATAG+AGG - chr4_2:1948525-1948544 None:intergenic 40.0%
AGAGGACATTCTTCTTGAGA+TGG + chr4_2:1948664-1948683 Msa0583390:CDS 40.0%
ATAGGATATTGAGGCCACAA+GGG + chr4_2:1948687-1948706 Msa0583390:CDS 40.0%
! TGTGATATTGCGTGATGATG+TGG + chr4_2:1948712-1948731 Msa0583390:CDS 40.0%
! TGATGTGGATGTGTTGTTGA+AGG + chr4_2:1948727-1948746 Msa0583390:CDS 40.0%
GATTTGCAGATGCAATGCAA+TGG + chr4_2:1948756-1948775 Msa0583390:CDS 40.0%
TTGTAGCAGTCAAGCAGTAT+TGG + chr4_2:1948831-1948850 Msa0583390:CDS 40.0%
! CTTTTCCAACCCCATTTATG+TGG + chr4_2:1948985-1949004 Msa0583390:three_prime_UTR 40.0%
TGCAAACCACCCACATAAAT+GGG - chr4_2:1948998-1949017 None:intergenic 40.0%
TTGCAAACCACCCACATAAA+TGG - chr4_2:1948999-1949018 None:intergenic 40.0%
!! AGGGTTTAGTTTGGACTGAG+GGG - chr4_2:1944093-1944112 None:intergenic 45.0%
!! GAGGGTTTAGTTTGGACTGA+GGG - chr4_2:1944094-1944113 None:intergenic 45.0%
!! AGAGGGTTTAGTTTGGACTG+AGG - chr4_2:1944095-1944114 None:intergenic 45.0%
CTTGTTTCATGAGAGTGACG+CGG - chr4_2:1944174-1944193 None:intergenic 45.0%
GAGTCTTGAGAGAGGTTTGT+TGG - chr4_2:1944319-1944338 None:intergenic 45.0%
! GGAGGTAAAAAAAGGTGCAG+AGG - chr4_2:1944365-1944384 None:intergenic 45.0%
GAGGCCAAGGAGGTAAAAAA+AGG - chr4_2:1944373-1944392 None:intergenic 45.0%
!!! TTTTTTACCTCCTTGGCCTC+TGG + chr4_2:1944373-1944392 Msa0583390:CDS 45.0%
! AAGCGTGATGGAAGAAGTAG+TGG - chr4_2:1944499-1944518 None:intergenic 45.0%
GGCTGAAAAATCAAGCGTGA+TGG - chr4_2:1944511-1944530 None:intergenic 45.0%
GATAAACCGACGTCACATAC+CGG - chr4_2:1944585-1944604 None:intergenic 45.0%
!! GGTATGTGACGTCGGTTTAT+CGG + chr4_2:1944584-1944603 Msa0583390:CDS 45.0%
AGCGGTCGTTGAAATTTCCT+CGG + chr4_2:1944631-1944650 Msa0583390:CDS 45.0%
TTATCGTGAGAGACACTGTC+CGG + chr4_2:1944665-1944684 Msa0583390:CDS 45.0%
TAGCATACCAAGCCCAATCA+CGG - chr4_2:1944764-1944783 None:intergenic 45.0%
!! GGGTTCATTTTGAAGGTGAC+CGG + chr4_2:1944829-1944848 Msa0583390:CDS 45.0%
!! ATTTTGAAGGTGACCGGTTC+AGG + chr4_2:1944835-1944854 Msa0583390:CDS 45.0%
AGAAAAACGTACCCCACAAC+CGG - chr4_2:1944967-1944986 None:intergenic 45.0%
TTCAATGTCAATGAACCGGG+TGG + chr4_2:1945051-1945070 Msa0583390:intron 45.0%
ACCATGAGCAGGAATGTGAT+TGG + chr4_2:1945121-1945140 Msa0583390:intron 45.0%
ACCAATCACATTCCTGCTCA+TGG - chr4_2:1945125-1945144 None:intergenic 45.0%
! TGTGATTGGTCCCCTATTCA+AGG + chr4_2:1945135-1945154 Msa0583390:intron 45.0%
TTGGTCCCCTATTCAAGGTT+TGG + chr4_2:1945140-1945159 Msa0583390:intron 45.0%
TGGGTCCAAACCTTGAATAG+GGG - chr4_2:1945148-1945167 None:intergenic 45.0%
GTTGGGTCCAAACCTTGAAT+AGG - chr4_2:1945150-1945169 None:intergenic 45.0%
ACGATTCCTGGAAGCAACTA+AGG - chr4_2:1945334-1945353 None:intergenic 45.0%
GACACTGCTAATATGTCACG+TGG - chr4_2:1946334-1946353 None:intergenic 45.0%
GCAATGACACCAATCAAAGC+TGG - chr4_2:1946415-1946434 None:intergenic 45.0%
AGGGTAAGGAAGCCTAATTG+TGG - chr4_2:1946437-1946456 None:intergenic 45.0%
TCAAAGGCTCTTGAAGGGTA+AGG - chr4_2:1946451-1946470 None:intergenic 45.0%
CCATGTCAAAGGCTCTTGAA+GGG - chr4_2:1946456-1946475 None:intergenic 45.0%
TGAGCAATGAGCCATGTCAA+AGG - chr4_2:1946467-1946486 None:intergenic 45.0%
CTCACGTTGCCTAATTCCTT+GGG + chr4_2:1946483-1946502 Msa0583390:CDS 45.0%
TCACGTTGCCTAATTCCTTG+GGG + chr4_2:1946484-1946503 Msa0583390:CDS 45.0%
TATTTACCATTCTGGCCCCA+AGG - chr4_2:1946502-1946521 None:intergenic 45.0%
GATAGAATCCAATACCCTCC+AGG - chr4_2:1946651-1946670 None:intergenic 45.0%
!! GGAGGGTATTGGATTCTATC+AGG + chr4_2:1946651-1946670 Msa0583390:CDS 45.0%
TGGCTCTCCCAATTTATTGG+TGG - chr4_2:1946678-1946697 None:intergenic 45.0%
AATTGGGAGAGCCATTGGAA+AGG + chr4_2:1946684-1946703 Msa0583390:CDS 45.0%
ATTGGGAGAGCCATTGGAAA+GGG + chr4_2:1946685-1946704 Msa0583390:CDS 45.0%
AAAAACTGATGTCACGGTCG+CGG + chr4_2:1947057-1947076 Msa0583390:intron 45.0%
! GCTTGCTGCCAAATAGAGTT+TGG + chr4_2:1947207-1947226 Msa0583390:intron 45.0%
ATGTTTGACACCACTTCCTG+AGG + chr4_2:1947448-1947467 Msa0583390:CDS 45.0%
ATGTCAGATACCTCAGGAAG+TGG - chr4_2:1947461-1947480 None:intergenic 45.0%
! TGTTAGTCTCTCAGGCCAAT+TGG - chr4_2:1947510-1947529 None:intergenic 45.0%
! GGAACTGATGTTAGTCTCTC+AGG - chr4_2:1947518-1947537 None:intergenic 45.0%
GACTAACATCAGTTCCACCA+AGG + chr4_2:1947522-1947541 Msa0583390:CDS 45.0%
TGATTATCAGCTAGCAGAGC+CGG + chr4_2:1947637-1947656 Msa0583390:CDS 45.0%
CATGAATATTGTTCCGGTCC+AGG + chr4_2:1947739-1947758 Msa0583390:CDS 45.0%
!! CTTGGTGTCGTTTATGAACG+CGG + chr4_2:1947776-1947795 Msa0583390:CDS 45.0%
GTCATAGGTTCGAGGATAAG+TGG - chr4_2:1948476-1948495 None:intergenic 45.0%
GATAGGATATTGAGGCCACA+AGG + chr4_2:1948686-1948705 Msa0583390:CDS 45.0%
!! TTTGGTGTGGTCCCTTTTCA+TGG - chr4_2:1948799-1948818 None:intergenic 45.0%
GCAAACCACCCACATAAATG+GGG - chr4_2:1948997-1949016 None:intergenic 45.0%
!! TAATTAATATTTAAAAGAAT+AGG - chr4_2:1946925-1946944 None:intergenic 5.0%
!!! AACAAATAAATTATTTTTTT+TGG - chr4_2:1947342-1947361 None:intergenic 5.0%
GTGATTATTGCCGGAGATGG+CGG - chr4_2:1944424-1944443 None:intergenic 50.0%
GTGGTGATTATTGCCGGAGA+TGG - chr4_2:1944427-1944446 None:intergenic 50.0%
GGTGGAGTGGTGATTATTGC+CGG - chr4_2:1944433-1944452 None:intergenic 50.0%
! TAGTTTGTGGGCAATCAGGG+CGG - chr4_2:1944464-1944483 None:intergenic 50.0%
GATGGAAGAAGTAGTGGTGG+AGG - chr4_2:1944493-1944512 None:intergenic 50.0%
! CGTGATGGAAGAAGTAGTGG+TGG - chr4_2:1944496-1944515 None:intergenic 50.0%
ATCGGAGTATACTCCGTGTG+AGG + chr4_2:1944602-1944621 Msa0583390:CDS 50.0%
GCGGTCGTTGAAATTTCCTC+GGG + chr4_2:1944632-1944651 Msa0583390:CDS 50.0%
CGGAGAATCTCCTCTTTCTC+CGG - chr4_2:1944687-1944706 None:intergenic 50.0%
CGGAGAAAGAGGAGATTCTC+CGG + chr4_2:1944685-1944704 Msa0583390:CDS 50.0%
AAGAGGAGATTCTCCGGTGT+CGG + chr4_2:1944691-1944710 Msa0583390:CDS 50.0%
TTCGGACGGACCCATCTTTA+AGG - chr4_2:1944932-1944951 None:intergenic 50.0%
! AACCGGTGTCTAAAGCGGTT+CGG - chr4_2:1944950-1944969 None:intergenic 50.0%
! CGAGGAGTTCCAGCTTTGAT+TGG + chr4_2:1946403-1946422 Msa0583390:CDS 50.0%
CCCTTCAAGAGCCTTTGACA+TGG + chr4_2:1946453-1946472 Msa0583390:CDS 50.0%
GCCATGTCAAAGGCTCTTGA+AGG - chr4_2:1946457-1946476 None:intergenic 50.0%
GCTCACGTTGCCTAATTCCT+TGG + chr4_2:1946482-1946501 Msa0583390:CDS 50.0%
CATTCTGGCCCCAAGGAATT+AGG - chr4_2:1946495-1946514 None:intergenic 50.0%
CTAATTCCTTGGGGCCAGAA+TGG + chr4_2:1946493-1946512 Msa0583390:CDS 50.0%
AATTTGTCGGGCACACGACA+AGG - chr4_2:1946528-1946547 None:intergenic 50.0%
! GTTGATAGAGTGCTACGTCC+TGG + chr4_2:1946630-1946649 Msa0583390:CDS 50.0%
! ATAGAGTGCTACGTCCTGGA+GGG + chr4_2:1946634-1946653 Msa0583390:CDS 50.0%
CAAAGGATCCTGACTCAGCA+TGG + chr4_2:1946886-1946905 Msa0583390:CDS 50.0%
TGAATTCTCGATTGCGACCG+TGG - chr4_2:1946973-1946992 None:intergenic 50.0%
! GTGGTGGAGGATTGTCCAAT+TGG + chr4_2:1947492-1947511 Msa0583390:CDS 50.0%
! GTTCCACCAAGGATTAGCAG+TGG + chr4_2:1947533-1947552 Msa0583390:CDS 50.0%
CTTCCACTGCTAATCCTTGG+TGG - chr4_2:1947539-1947558 None:intergenic 50.0%
GATTATCAGCTAGCAGAGCC+GGG + chr4_2:1947638-1947657 Msa0583390:CDS 50.0%
ATTATCAGCTAGCAGAGCCG+GGG + chr4_2:1947639-1947658 Msa0583390:CDS 50.0%
! CAAGTGTGTTGATCTCAGCC+TGG - chr4_2:1947760-1947779 None:intergenic 50.0%
CAGGCTGAGATCAACACACT+TGG + chr4_2:1947758-1947777 Msa0583390:CDS 50.0%
!!! ACTGCTTTTTGTCTCCACCC+AGG + chr4_2:1948437-1948456 Msa0583390:intron 50.0%
GGTTCGAGGATAAGTGGACA+TGG - chr4_2:1948470-1948489 None:intergenic 50.0%
CGCAATATCACACTCCCTTG+TGG - chr4_2:1948704-1948723 None:intergenic 50.0%
TCCAACCCCATTTATGTGGG+TGG + chr4_2:1948989-1949008 Msa0583390:three_prime_UTR 50.0%
ACCACCCACATAAATGGGGT+TGG - chr4_2:1948993-1949012 None:intergenic 50.0%
! GGTGCAGAGGATGATGGTGA+AGG - chr4_2:1944352-1944371 None:intergenic 55.0%
! AGTTTTGCCAGAGGCCAAGG+AGG - chr4_2:1944383-1944402 None:intergenic 55.0%
! AGGAGTTTTGCCAGAGGCCA+AGG - chr4_2:1944386-1944405 None:intergenic 55.0%
! TGGTGGAGGAGTTTTGCCAG+AGG - chr4_2:1944392-1944411 None:intergenic 55.0%
! ATTATTGCCGGAGATGGCGG+CGG - chr4_2:1944421-1944440 None:intergenic 55.0%
TGGGTCGGGGACGTTATGAT+GGG - chr4_2:1944532-1944551 None:intergenic 55.0%
GAGACACTGTCCGGAGAAAG+AGG + chr4_2:1944674-1944693 Msa0583390:CDS 55.0%
! GATTCTCCGGTGTCGGATAC+CGG + chr4_2:1944698-1944717 Msa0583390:CDS 55.0%
TGTCGGATACCGGCACCATA+TGG + chr4_2:1944708-1944727 Msa0583390:CDS 55.0%
ATGCGGTAGCCATATGGTGC+CGG - chr4_2:1944720-1944739 None:intergenic 55.0%
CACCACCAGGAAACCTGAAC+CGG - chr4_2:1944851-1944870 None:intergenic 55.0%
! GGTTCAGGTTTCCTGGTGGT+GGG + chr4_2:1944850-1944869 Msa0583390:CDS 55.0%
! GGTGTCTAAAGCGGTTCGGA+CGG - chr4_2:1944946-1944965 None:intergenic 55.0%
! GTCCGAACCGCTTTAGACAC+CGG + chr4_2:1944945-1944964 Msa0583390:CDS 55.0%
! ACCGCTTTAGACACCGGTTG+TGG + chr4_2:1944951-1944970 Msa0583390:CDS 55.0%
CCCACAACCGGTGTCTAAAG+CGG - chr4_2:1944955-1944974 None:intergenic 55.0%
! CCGCTTTAGACACCGGTTGT+GGG + chr4_2:1944952-1944971 Msa0583390:CDS 55.0%
! CGCTTTAGACACCGGTTGTG+GGG + chr4_2:1944953-1944972 Msa0583390:CDS 55.0%
TAGAGGGGAAGTGAACCACC+CGG - chr4_2:1945069-1945088 None:intergenic 55.0%
GGTGGTTCACTTCCCCTCTA+TGG + chr4_2:1945069-1945088 Msa0583390:intron 55.0%
! GATAGAGTGCTACGTCCTGG+AGG + chr4_2:1946633-1946652 Msa0583390:CDS 55.0%
! TGCTACGTCCTGGAGGGTAT+TGG + chr4_2:1946640-1946659 Msa0583390:CDS 55.0%
GGAGAGCCATTGGAAAGGGT+GGG + chr4_2:1946689-1946708 Msa0583390:CDS 55.0%
TCCTCTCCCACCCTTTCCAA+TGG - chr4_2:1946698-1946717 None:intergenic 55.0%
! GTGTTGATCTCAGCCTGGAC+CGG - chr4_2:1947755-1947774 None:intergenic 55.0%
GTGGACATGGCTTCACACCT+GGG - chr4_2:1948457-1948476 None:intergenic 55.0%
AGTGGACATGGCTTCACACC+TGG - chr4_2:1948458-1948477 None:intergenic 55.0%
!! ATCAGGGCGGATGATGGTGG+TGG - chr4_2:1944451-1944470 None:intergenic 60.0%
! GCAATCAGGGCGGATGATGG+TGG - chr4_2:1944454-1944473 None:intergenic 60.0%
TGGGCAATCAGGGCGGATGA+TGG - chr4_2:1944457-1944476 None:intergenic 60.0%
GTGGGTCGGGGACGTTATGA+TGG - chr4_2:1944533-1944552 None:intergenic 60.0%
! AACGCGCCGGTATGTGACGT+CGG + chr4_2:1944576-1944595 Msa0583390:CDS 60.0%
!! ATGGTGCCGGTATCCGACAC+CGG - chr4_2:1944707-1944726 None:intergenic 60.0%
GGCGGAATGCGGTAGCCATA+TGG - chr4_2:1944726-1944745 None:intergenic 60.0%
GTGGCCTGAGAGCCGTGATT+GGG + chr4_2:1944749-1944768 Msa0583390:CDS 60.0%
CAAGCCCAATCACGGCTCTC+AGG - chr4_2:1944756-1944775 None:intergenic 60.0%
CTGAGAGCCGTGATTGGGCT+TGG + chr4_2:1944754-1944773 Msa0583390:CDS 60.0%
! GGTGACCGGTTCAGGTTTCC+TGG + chr4_2:1944843-1944862 Msa0583390:CDS 60.0%
! GACCGGTTCAGGTTTCCTGG+TGG + chr4_2:1944846-1944865 Msa0583390:CDS 60.0%
! CGGTTCAGGTTTCCTGGTGG+TGG + chr4_2:1944849-1944868 Msa0583390:CDS 60.0%
GGAAACATGGTCCCACCACC+AGG - chr4_2:1944864-1944883 None:intergenic 60.0%
GGTGGGACCATGTTTCCACG+TGG + chr4_2:1944867-1944886 Msa0583390:CDS 60.0%
ACCATGTTTCCACGTGGCGC+TGG + chr4_2:1944873-1944892 Msa0583390:CDS 60.0%
ACCAGCGCCACGTGGAAACA+TGG - chr4_2:1944877-1944896 None:intergenic 60.0%
ATGTATGCACCAGCGCCACG+TGG - chr4_2:1944885-1944904 None:intergenic 60.0%
GGGAGAGCCATTGGAAAGGG+TGG + chr4_2:1946688-1946707 Msa0583390:CDS 60.0%
GCCATTGGAAAGGGTGGGAG+AGG + chr4_2:1946694-1946713 Msa0583390:CDS 60.0%
GACATGGCTTCACACCTGGG+TGG - chr4_2:1948454-1948473 None:intergenic 60.0%
!! GGCGGATGATGGTGGTGGAG+TGG - chr4_2:1944446-1944465 None:intergenic 65.0%
! CTGCGGATTCTGGTGGGTCG+GGG - chr4_2:1944545-1944564 None:intergenic 65.0%
! GCTGCGGATTCTGGTGGGTC+GGG - chr4_2:1944546-1944565 None:intergenic 65.0%
! CGCTGCGGATTCTGGTGGGT+CGG - chr4_2:1944547-1944566 None:intergenic 65.0%
CACGCGCTGCGGATTCTGGT+GGG - chr4_2:1944551-1944570 None:intergenic 65.0%
ACACGCGCTGCGGATTCTGG+TGG - chr4_2:1944552-1944571 None:intergenic 65.0%
GTCACACGCGCTGCGGATTC+TGG - chr4_2:1944555-1944574 None:intergenic 65.0%
CGCGTTAGTCACACGCGCTG+CGG - chr4_2:1944562-1944581 None:intergenic 65.0%
AGCGCGTGTGACTAACGCGC+CGG + chr4_2:1944563-1944582 Msa0583390:CDS 65.0%
CTCCGTGTGAGGACGTGCAG+CGG + chr4_2:1944613-1944632 Msa0583390:CDS 65.0%
GACCGCTGCACGTCCTCACA+CGG - chr4_2:1944618-1944637 None:intergenic 65.0%
ATGGCTACCGCATTCCGCCG+CGG + chr4_2:1944727-1944746 Msa0583390:CDS 65.0%
GGTGGCCTGAGAGCCGTGAT+TGG + chr4_2:1944748-1944767 Msa0583390:CDS 65.0%
AGGGTGGGAGAGGACTCGTG+AGG + chr4_2:1946704-1946723 Msa0583390:CDS 65.0%
ACCACCTCCGCCGCCATCTC+CGG + chr4_2:1944411-1944430 Msa0583390:CDS 70.0%
! ATTGCCGGAGATGGCGGCGG+AGG - chr4_2:1944418-1944437 None:intergenic 70.0%
TCACGGCTCTCAGGCCACCG+CGG - chr4_2:1944747-1944766 None:intergenic 70.0%
! GATGGCGGCGGAGGTGGTGG+TGG - chr4_2:1944409-1944428 None:intergenic 75.0%
! GGAGATGGCGGCGGAGGTGG+TGG - chr4_2:1944412-1944431 None:intergenic 75.0%
GCTACCGCATTCCGCCGCGG+TGG + chr4_2:1944730-1944749 Msa0583390:CDS 75.0%
CAGGCCACCGCGGCGGAATG+CGG - chr4_2:1944737-1944756 None:intergenic 75.0%
!!! GGCGGCGGAGGTGGTGGTGG+AGG - chr4_2:1944406-1944425 None:intergenic 80.0%
!! GCCGGAGATGGCGGCGGAGG+TGG - chr4_2:1944415-1944434 None:intergenic 80.0%
! CGGCTCTCAGGCCACCGCGG+CGG - chr4_2:1944744-1944763 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 1944081 1949180 1944081 ID=Msa0583390;Name=Msa0583390
chr4_2 mRNA 1944081 1949180 1944081 ID=Msa0583390-mRNA-1;Parent=Msa0583390;Name=Msa0583390-mRNA-1;_AED=0.04;_eAED=0.04;_QI=198|1|1|1|1|1|6|285|638
chr4_2 exon 1944081 1944974 1944081 ID=Msa0583390-mRNA-1:exon:480;Parent=Msa0583390-mRNA-1
chr4_2 exon 1946304 1946514 1946304 ID=Msa0583390-mRNA-1:exon:481;Parent=Msa0583390-mRNA-1
chr4_2 exon 1946610 1946907 1946610 ID=Msa0583390-mRNA-1:exon:482;Parent=Msa0583390-mRNA-1
chr4_2 exon 1947430 1947822 1947430 ID=Msa0583390-mRNA-1:exon:483;Parent=Msa0583390-mRNA-1
chr4_2 exon 1948459 1948536 1948459 ID=Msa0583390-mRNA-1:exon:484;Parent=Msa0583390-mRNA-1
chr4_2 exon 1948655 1949180 1948655 ID=Msa0583390-mRNA-1:exon:485;Parent=Msa0583390-mRNA-1
chr4_2 five_prime_UTR 1944081 1944278 1944081 ID=Msa0583390-mRNA-1:five_prime_utr;Parent=Msa0583390-mRNA-1
chr4_2 CDS 1944279 1944974 1944279 ID=Msa0583390-mRNA-1:cds;Parent=Msa0583390-mRNA-1
chr4_2 CDS 1946304 1946514 1946304 ID=Msa0583390-mRNA-1:cds;Parent=Msa0583390-mRNA-1
chr4_2 CDS 1946610 1946907 1946610 ID=Msa0583390-mRNA-1:cds;Parent=Msa0583390-mRNA-1
chr4_2 CDS 1947430 1947822 1947430 ID=Msa0583390-mRNA-1:cds;Parent=Msa0583390-mRNA-1
chr4_2 CDS 1948459 1948536 1948459 ID=Msa0583390-mRNA-1:cds;Parent=Msa0583390-mRNA-1
chr4_2 CDS 1948655 1948895 1948655 ID=Msa0583390-mRNA-1:cds;Parent=Msa0583390-mRNA-1
chr4_2 three_prime_UTR 1948896 1949180 1948896 ID=Msa0583390-mRNA-1:three_prime_utr;Parent=Msa0583390-mRNA-1
Gene Sequence

>Msa0583390

ATGGCTAATTCTTTCTTATCAATTTTCAACAAGAAACCCAACAAACCTCTCTCAAGACTCTACTTTCTCACCTTCACCATCATCCTCTGCACCTTTTTTTACCTCCTTGGCCTCTGGCAAAACTCCTCCACCACCACCTCCGCCGCCATCTCCGGCAATAATCACCACTCCACCACCATCATCCGCCCTGATTGCCCACAAACTAATTTCACCTCCACCACTACTTCTTCCATCACGCTTGATTTTTCAGCCCATCATAACGTCCCCGACCCACCAGAATCCGCAGCGCGTGTGACTAACGCGCCGGTATGTGACGTCGGTTTATCGGAGTATACTCCGTGTGAGGACGTGCAGCGGTCGTTGAAATTTCCTCGGGAGAATTTAATTTATCGTGAGAGACACTGTCCGGAGAAAGAGGAGATTCTCCGGTGTCGGATACCGGCACCATATGGCTACCGCATTCCGCCGCGGTGGCCTGAGAGCCGTGATTGGGCTTGGTATGCTAATGTGCCACATAAAGAATTGACGATTGAGAAAAAAAACCAAAATTGGGTTCATTTTGAAGGTGACCGGTTCAGGTTTCCTGGTGGTGGGACCATGTTTCCACGTGGCGCTGGTGCATACATTGATGATATCGGAAAACTCATCAACCTTAAAGATGGGTCCGTCCGAACCGCTTTAGACACCGGTTGTGGGGTTGCAAGTTGGGGAGCATATCTTTTGCCACGTGACATATTAGCAGTGTCATTTGCACCAAGAGATACACATGAAGCTCAAGTTCAATTTGCTCTTGAACGAGGAGTTCCAGCTTTGATTGGTGTCATTGCCACAATTAGGCTTCCTTACCCTTCAAGAGCCTTTGACATGGCTCATTGCTCACGTTGCCTAATTCCTTGGGGCCAGAATGATGGAATTTATTTAACTGAAGTTGATAGAGTGCTACGTCCTGGAGGGTATTGGATTCTATCAGGGCCACCAATAAATTGGGAGAGCCATTGGAAAGGGTGGGAGAGGACTCGTGAGGATCTAAATGCTGAACAGACTTCAATTGAGAGAGTGGCAAAAAGTCTTTGTTGGAAAAAACTAGTTCAGAAGGGTGACATTGCAATATGGCAAAAGCCTACTAATCATATTCATTGCAAAATAACAAGAAAGGTCTTCAAGAATAGACCCTTTTGTGATGCAAAGGATCCTGACTCAGCATGGTACACCAAAATGGATACATGTTTGACACCACTTCCTGAGGTATCTGACATAAAAGAAGTTAGTGGTGGAGGATTGTCCAATTGGCCTGAGAGACTAACATCAGTTCCACCAAGGATTAGCAGTGGAAGTTTGGATGGAATCACAGCTGAGATGTTCAAAGAAAATACCGAGTTATGGAAGAAGAGAGTTGCATACTACAAGACACTTGATTATCAGCTAGCAGAGCCGGGGAGATACCGTAATTTACTTGATATGAATGCTTACATGGGAGGATTTGCAGCTGCAATGATTGATGATCCAGTTTGGGTCATGAATATTGTTCCGGTCCAGGCTGAGATCAACACACTTGGTGTCGTTTATGAACGCGGATTGATCGGAACATATCAGAACTGGTGTGAAGCCATGTCCACTTATCCTCGAACCTATGACTTTATACATGCTGATTCTCTTTTTACCCTCTATGAGGACAGATGTAATATAGAGGACATTCTTCTTGAGATGGATAGGATATTGAGGCCACAAGGGAGTGTGATATTGCGTGATGATGTGGATGTGTTGTTGAAGGTAAAAAGATTTGCAGATGCAATGCAATGGGATGCTAGAATTGCAGACCATGAAAAGGGACCACACCAAAGAGAAAAGATACTTGTAGCAGTCAAGCAGTATTGGACATCCCCACAACCTGAACAAAATCAACAAAGAAAGTTATAA
Protein sequence

>Msa0583390

MANSFLSIFNKKPNKPLSRLYFLTFTIILCTFFYLLGLWQNSSTTTSAAISGNNHHSTTIIRPDCPQTNFTSTTTSSITLDFSAHHNVPDPPESAARVTNAPVCDVGLSEYTPCEDVQRSLKFPRENLIYRERHCPEKEEILRCRIPAPYGYRIPPRWPESRDWAWYANVPHKELTIEKKNQNWVHFEGDRFRFPGGGTMFPRGAGAYIDDIGKLINLKDGSVRTALDTGCGVASWGAYLLPRDILAVSFAPRDTHEAQVQFALERGVPALIGVIATIRLPYPSRAFDMAHCSRCLIPWGQNDGIYLTEVDRVLRPGGYWILSGPPINWESHWKGWERTREDLNAEQTSIERVAKSLCWKKLVQKGDIAIWQKPTNHIHCKITRKVFKNRPFCDAKDPDSAWYTKMDTCLTPLPEVSDIKEVSGGGLSNWPERLTSVPPRISSGSLDGITAEMFKENTELWKKRVAYYKTLDYQLAEPGRYRNLLDMNAYMGGFAAAMIDDPVWVMNIVPVQAEINTLGVVYERGLIGTYQNWCEAMSTYPRTYDFIHADSLFTLYEDRCNIEDILLEMDRILRPQGSVILRDDVDVLLKVKRFADAMQWDARIADHEKGPHQREKILVAVKQYWTSPQPEQNQQRKL*