Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0019580 | sp|O82462|SYEC_ARATH | 70.421 | 737 | 196 | 6 | 1 | 736 | 1 | 716 | 0.0 | 1087 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0019580 | Msa0381610 | -0.803321 | 3.686003e-49 | -8.615850e-47 |
Msa0019580 | Msa0688270 | 0.806062 | 9.871024e-50 | -8.615850e-47 |
Msa0019580 | Msa0817460 | 0.813869 | 2.057266e-51 | -8.615850e-47 |
Msa0019580 | Msa1083840 | 0.807276 | 5.469417e-50 | -8.615850e-47 |
Msa0019580 | Msa1121490 | 0.820470 | 6.743252e-53 | -8.615850e-47 |
Msa0019580 | Msa1162780 | 0.804534 | 2.063103e-49 | -8.615850e-47 |
Msa0019580 | Msa1388930 | 0.807395 | 5.161674e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0019580 | MtrunA17_Chr1g0193431 | 89.488 | 742 | 69 | 1 | 1 | 742 | 3 | 735 | 0.0 | 1376 |
Msa0019580 | MtrunA17_Chr1g0209631 | 33.528 | 513 | 311 | 12 | 223 | 717 | 269 | 769 | 4.03e-67 | 236 |
Msa0019580 | MtrunA17_Chr8g0337411 | 26.906 | 223 | 132 | 7 | 225 | 426 | 55 | 267 | 1.99e-12 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0019580 | AT5G26710.1 | 70.421 | 737 | 196 | 6 | 1 | 736 | 1 | 716 | 0.0 | 1087 |
Msa0019580 | AT1G25350.1 | 32.227 | 512 | 320 | 10 | 223 | 717 | 269 | 770 | 4.71e-67 | 237 |
Msa0019580 | AT1G25350.2 | 30.368 | 517 | 328 | 11 | 223 | 717 | 269 | 775 | 4.67e-58 | 211 |
Find 167 sgRNAs with CRISPR-Local
Find 342 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGAGGAGAATTTGAAATTA+TGG | 0.211763 | 1_1:+34103840 | Msa0019580:CDS |
TTGACGACTGGCTGGTCTTT+TGG | 0.223662 | 1_1:-34103362 | None:intergenic |
CGCAATGACCGCACTGTGTC+TGG | 0.265682 | 1_1:-34104574 | None:intergenic |
CAATCGCAGATCTAGCTATC+TGG | 0.266430 | 1_1:+34103006 | Msa0019580:CDS |
CTTATCTATTTCCTTTACTA+TGG | 0.280813 | 1_1:-34104787 | None:intergenic |
TCAAATTCTCCTCTATACTA+TGG | 0.289207 | 1_1:-34103832 | None:intergenic |
GCAACTCTTCCTAATTTCTA+TGG | 0.300296 | 1_1:+34101782 | Msa0019580:CDS |
ACGCTTAAGATTTCGCATAT+TGG | 0.307983 | 1_1:-34105438 | None:intergenic |
TTACCTCATTACGAAGAAAA+AGG | 0.308169 | 1_1:+34104941 | Msa0019580:CDS |
TCAGCAAACGAAAGCTTCTA+TGG | 0.315812 | 1_1:+34104191 | Msa0019580:CDS |
GCTATCTGGGCAGGTCTTGC+AGG | 0.316994 | 1_1:+34103020 | Msa0019580:CDS |
CGAATTTAGCCGGTTGAATA+TGG | 0.317857 | 1_1:+34104156 | Msa0019580:CDS |
TGGAGAGAAAGGGATATTTC+AGG | 0.324909 | 1_1:+34105477 | Msa0019580:CDS |
GATGTCTGCTGCCTGCCATC+TGG | 0.343011 | 1_1:-34105551 | None:intergenic |
TGAAGATAGCCACTGGGTTC+AGG | 0.349425 | 1_1:-34103503 | None:intergenic |
GAAGTCACATCAACATATAT+TGG | 0.353025 | 1_1:+34103305 | Msa0019580:CDS |
CCCAGTGGCTATCTTCATAT+TGG | 0.358754 | 1_1:+34103509 | Msa0019580:CDS |
AAGCTACCACATATACAAAA+AGG | 0.360107 | 1_1:+34104691 | Msa0019580:CDS |
GTGGTCTTCACAGATCCTTC+AGG | 0.360979 | 1_1:-34104852 | None:intergenic |
TCAATGCCTCATCATAGAAT+TGG | 0.379838 | 1_1:+34103974 | Msa0019580:CDS |
ACCCTGTGACATTCCCATCT+TGG | 0.408163 | 1_1:-34104812 | None:intergenic |
CTTCCCTGAGTTGATGAAAC+TGG | 0.410276 | 1_1:+34103709 | Msa0019580:CDS |
GGAAGTAACCTTGATGGATT+GGG | 0.417880 | 1_1:+34104758 | Msa0019580:CDS |
AGTATTGCAGCTGGAGAGAA+AGG | 0.419290 | 1_1:+34105466 | Msa0019580:CDS |
AGTTGGATACACTTTATACT+TGG | 0.420137 | 1_1:-34103999 | None:intergenic |
ACACGATTGGTTTCGAAGGC+CGG | 0.426191 | 1_1:-34105517 | None:intergenic |
GGATCACGGAGTGATTTGTT+TGG | 0.426882 | 1_1:-34103932 | None:intergenic |
GCTAACGGTGGCGTGTTGGC+AGG | 0.432833 | 1_1:-34101538 | None:intergenic |
ACTAGTTAGCCTGACATTGA+TGG | 0.433753 | 1_1:+34104911 | Msa0019580:CDS |
TGAAGAAAATCCGGCGAGCT+TGG | 0.433828 | 1_1:-34101575 | None:intergenic |
CTTTGTTTGCAGCTTGAGAA+AGG | 0.435061 | 1_1:+34105326 | Msa0019580:intron |
GATTTGCAACGATAATAAAC+AGG | 0.436698 | 1_1:-34103953 | None:intergenic |
AAAAGAGCAAAGTTGAATCA+TGG | 0.437459 | 1_1:+34104221 | Msa0019580:CDS |
AGGAAGTAACCTTGATGGAT+TGG | 0.439791 | 1_1:+34104757 | Msa0019580:CDS |
CCACATTTCTCTTCTCCAAC+GGG | 0.442745 | 1_1:+34101632 | Msa0019580:CDS |
ACGATGGTACAATTCAATAA+TGG | 0.446007 | 1_1:+34103259 | Msa0019580:CDS |
GATAAAAGATGTTAAGATGT+TGG | 0.451442 | 1_1:+34103649 | Msa0019580:CDS |
CCACAAAACTGAAGCTCACT+TGG | 0.452027 | 1_1:+34104871 | Msa0019580:CDS |
GTCAATGGATGAAGAAAATC+CGG | 0.453714 | 1_1:-34101584 | None:intergenic |
TGCCAACACGCCACCGTTAG+CGG | 0.455706 | 1_1:+34101540 | Msa0019580:CDS |
CAGCTTGAGAAAGGAAAGAA+TGG | 0.456822 | 1_1:+34105335 | Msa0019580:intron |
TTATGGAAGGAAATGATTGC+AGG | 0.457763 | 1_1:+34103857 | Msa0019580:CDS |
ATAAAAGATGTTAAGATGTT+GGG | 0.458475 | 1_1:+34103650 | Msa0019580:CDS |
AAATCTCAATCTCATGGAAT+GGG | 0.463289 | 1_1:+34104506 | Msa0019580:CDS |
CAAGTATATTGATGACTACT+TGG | 0.468006 | 1_1:+34102950 | Msa0019580:CDS |
AGGAGGAAGGGAGGTGTCAA+TGG | 0.471796 | 1_1:-34101599 | None:intergenic |
AAAATCTCAATCTCATGGAA+TGG | 0.472161 | 1_1:+34104505 | Msa0019580:CDS |
GATAAAGTGAAGAATGTGAA+TGG | 0.472243 | 1_1:+34103386 | Msa0019580:CDS |
ATAAAGTGAAGAATGTGAAT+GGG | 0.472454 | 1_1:+34103387 | Msa0019580:CDS |
GCACTGTGTCTGGGACATAC+AGG | 0.473838 | 1_1:-34104564 | None:intergenic |
TTCTCATCTACGAATTTAGC+CGG | 0.474652 | 1_1:+34104146 | Msa0019580:CDS |
TCCAATATGAAGATAGCCAC+TGG | 0.476082 | 1_1:-34103510 | None:intergenic |
TACTTCCTCACCTGCTGATA+CGG | 0.478040 | 1_1:-34104742 | None:intergenic |
GCGTGTTGGCAGGGAAGGAA+AGG | 0.481059 | 1_1:-34101528 | None:intergenic |
TCATGGAATGGGACAAGCTA+TGG | 0.483068 | 1_1:+34104517 | Msa0019580:CDS |
ATGTCTGCTGCCTGCCATCT+GGG | 0.485977 | 1_1:-34105550 | None:intergenic |
GGCGGATTCAGGAGGAAGGG+AGG | 0.486629 | 1_1:-34101608 | None:intergenic |
CCCACATTTCTCTTCTCCAA+CGG | 0.489052 | 1_1:+34101631 | Msa0019580:CDS |
CGGTGGCGTGTTGGCAGGGA+AGG | 0.491112 | 1_1:-34101533 | None:intergenic |
TGACACTCCACGTGAACAAA+AGG | 0.492498 | 1_1:+34103769 | Msa0019580:CDS |
TGCTGAGCGATACAAAGGTC+AGG | 0.492981 | 1_1:+34103565 | Msa0019580:CDS |
TCAGCCAGTTTCATCAACTC+AGG | 0.495331 | 1_1:-34103713 | None:intergenic |
GACCAAGATGGGAATGTCAC+AGG | 0.497471 | 1_1:+34104810 | Msa0019580:CDS |
GGACAGGCAAAATCATAAGT+TGG | 0.503923 | 1_1:-34104016 | None:intergenic |
GAGTGTAGACCATATTCAAC+CGG | 0.504461 | 1_1:-34104165 | None:intergenic |
GGGATTGCAAATAACACGAT+TGG | 0.508386 | 1_1:-34105530 | None:intergenic |
GAAATAGATAAGGACCAAGA+TGG | 0.508595 | 1_1:+34104798 | Msa0019580:CDS |
ATGCGGACAAATGATTTCTC+AGG | 0.508905 | 1_1:-34104630 | None:intergenic |
CGCACAATTCCTTGCACTGT+GGG | 0.509364 | 1_1:-34104259 | None:intergenic |
TTCACTTTATCCTTGACGAC+TGG | 0.509750 | 1_1:-34103374 | None:intergenic |
CATAGTAAAGGAAATAGATA+AGG | 0.510740 | 1_1:+34104788 | Msa0019580:CDS |
TTTCAGGTGCTGGAAAGAGA+TGG | 0.510988 | 1_1:+34103198 | Msa0019580:intron |
AATCAAACTCCATCAATGTC+AGG | 0.511094 | 1_1:-34104920 | None:intergenic |
GACGCAGAGTCCGTATCAGC+AGG | 0.511379 | 1_1:+34104732 | Msa0019580:CDS |
TCTGATAACATTAAGGGAGG+AGG | 0.512500 | 1_1:+34103416 | Msa0019580:CDS |
TATGCACATGTACTCTCATC+AGG | 0.512531 | 1_1:+34102906 | Msa0019580:CDS |
CTTTATCCTTGACGACTGGC+TGG | 0.513178 | 1_1:-34103370 | None:intergenic |
TTTGTGCAAGGGTTAAGCAC+AGG | 0.513222 | 1_1:-34105389 | None:intergenic |
GATCTTCCAGATGCTGAAGT+TGG | 0.514176 | 1_1:+34103458 | Msa0019580:CDS |
AAAATTAATTAGCCAGGGTA+AGG | 0.515011 | 1_1:+34103736 | Msa0019580:CDS |
GGCATTTCCCCAATCCATCA+AGG | 0.517350 | 1_1:-34104766 | None:intergenic |
CGTGTTGGCAGGGAAGGAAA+GGG | 0.521653 | 1_1:-34101527 | None:intergenic |
CCTTCACGAGCATCAACAAA+TGG | 0.521928 | 1_1:-34104037 | None:intergenic |
AAGGTATCACTCATGCCCTT+CGG | 0.524399 | 1_1:+34104056 | Msa0019580:CDS |
TCCACGTGAACAAAAGGAAA+AGG | 0.526198 | 1_1:+34103775 | Msa0019580:CDS |
AATCGCAGATCTAGCTATCT+GGG | 0.526585 | 1_1:+34103007 | Msa0019580:CDS |
ATGCAGAAACCATAGTATAG+AGG | 0.528118 | 1_1:+34103823 | Msa0019580:CDS |
TTCAGGTGCTGGAAAGAGAT+GGG | 0.528173 | 1_1:+34103199 | Msa0019580:intron |
GGTGTGATGTACCCTTCGTC+CGG | 0.530625 | 1_1:+34105498 | Msa0019580:CDS |
GTGTTATGTCCGTGGGAAGT+TGG | 0.531075 | 1_1:+34103898 | Msa0019580:CDS |
ATGTAACGCAGAAGAACAAA+TGG | 0.533432 | 1_1:-34101749 | None:intergenic |
GGAGAATTTGAAATTATGGA+AGG | 0.534607 | 1_1:+34103844 | Msa0019580:CDS |
GCGTGGAGAAGTATTGCAGC+TGG | 0.537955 | 1_1:+34105457 | Msa0019580:CDS |
GGGAATGTCACAGGGTTAAG+TGG | 0.540528 | 1_1:+34104819 | Msa0019580:CDS |
ATCGTAATGCTCAGTATCAC+AGG | 0.540697 | 1_1:+34104095 | Msa0019580:CDS |
TTGGGGAAATGCCATAGTAA+AGG | 0.541795 | 1_1:+34104776 | Msa0019580:CDS |
AAAGAGCAAAGTTGAATCAT+GGG | 0.544517 | 1_1:+34104222 | Msa0019580:CDS |
TTTGTTCTTCTGCGTTACAT+TGG | 0.545230 | 1_1:+34101752 | Msa0019580:CDS |
GGCTTGCAGTGTTATGTCCG+TGG | 0.546395 | 1_1:+34103890 | Msa0019580:CDS |
AAATCCGGCGAGCTTGGATG+CGG | 0.549060 | 1_1:-34101569 | None:intergenic |
AGGTGAGGAAGTAACCTTGA+TGG | 0.551874 | 1_1:+34104752 | Msa0019580:CDS |
CCACGATTTCCCACAGTGCA+AGG | 0.553811 | 1_1:+34104250 | Msa0019580:CDS |
CCTTGCACTGTGGGAAATCG+TGG | 0.554087 | 1_1:-34104250 | None:intergenic |
AAATAGATAAGGACCAAGAT+GGG | 0.555380 | 1_1:+34104799 | Msa0019580:CDS |
TATTTGCAATCCCAGATGGC+AGG | 0.556570 | 1_1:+34105540 | Msa0019580:CDS |
GTGTTATTTGCAATCCCAGA+TGG | 0.560737 | 1_1:+34105536 | Msa0019580:CDS |
GCAATGACCGCACTGTGTCT+GGG | 0.562208 | 1_1:-34104573 | None:intergenic |
CAGCCAGTTTCATCAACTCA+GGG | 0.564927 | 1_1:-34103712 | None:intergenic |
TACCGCTAACGGTGGCGTGT+TGG | 0.566261 | 1_1:-34101542 | None:intergenic |
CCGTTGGAGAAGAGAAATGT+GGG | 0.567490 | 1_1:-34101631 | None:intergenic |
ACGAGCATCAACAAATGGAC+AGG | 0.568037 | 1_1:-34104032 | None:intergenic |
TAAGGGAGGAGGCATGCCTT+CGG | 0.569498 | 1_1:+34103427 | Msa0019580:CDS |
GCAGATCTAGCTATCTGGGC+AGG | 0.571047 | 1_1:+34103011 | Msa0019580:CDS |
CTAACGGTGGCGTGTTGGCA+GGG | 0.573298 | 1_1:-34101537 | None:intergenic |
CTAACTAGTTCATCTAACTC+AGG | 0.576697 | 1_1:-34104897 | None:intergenic |
TCACAGGATTCAAGAGGACA+TGG | 0.578665 | 1_1:+34104111 | Msa0019580:CDS |
AGCTTGAGAAAGGAAAGAAT+GGG | 0.586130 | 1_1:+34105336 | Msa0019580:intron |
GGTTTCGAAGGCCGGACGAA+GGG | 0.590280 | 1_1:-34105509 | None:intergenic |
GCTTGCAGTGTTATGTCCGT+GGG | 0.592046 | 1_1:+34103891 | Msa0019580:CDS |
AGAGTCCGTATCAGCAGGTG+AGG | 0.595755 | 1_1:+34104737 | Msa0019580:CDS |
CACTGTGTCTGGGACATACA+GGG | 0.597397 | 1_1:-34104563 | None:intergenic |
AATAACACGATTGGTTTCGA+AGG | 0.600160 | 1_1:-34105521 | None:intergenic |
GTGGTATTCACTTGACCGAA+GGG | 0.600221 | 1_1:-34104071 | None:intergenic |
AATGATTGCAGGATCAGAGA+GGG | 0.601106 | 1_1:+34103868 | Msa0019580:CDS |
GAAAGAGATGGGAAAGCTTG+AGG | 0.602516 | 1_1:+34103210 | Msa0019580:CDS |
TTGTGCAAGGGTTAAGCACA+GGG | 0.603914 | 1_1:-34105388 | None:intergenic |
CATTTGTCCGCATCATACCT+AGG | 0.604356 | 1_1:+34104640 | Msa0019580:CDS |
CCCGTTGGAGAAGAGAAATG+TGG | 0.604923 | 1_1:-34101632 | None:intergenic |
ATCGCCGCATCCAAGCTCGC+CGG | 0.606160 | 1_1:+34101565 | Msa0019580:CDS |
AAAAGACCAGCCAGTCGTCA+AGG | 0.611058 | 1_1:+34103364 | Msa0019580:CDS |
CCATTTGTTGATGCTCGTGA+AGG | 0.612122 | 1_1:+34104037 | Msa0019580:CDS |
TTGGATCCAATTCTATGATG+AGG | 0.614189 | 1_1:-34103980 | None:intergenic |
TAAAGTGAAGAATGTGAATG+GGG | 0.619059 | 1_1:+34103388 | Msa0019580:CDS |
GTATTGCAGCTGGAGAGAAA+GGG | 0.620537 | 1_1:+34105467 | Msa0019580:CDS |
CGTGGTATTCACTTGACCGA+AGG | 0.620830 | 1_1:-34104072 | None:intergenic |
CCAATATGAAGATAGCCACT+GGG | 0.621615 | 1_1:-34103509 | None:intergenic |
AACAAAAGGAAAAGGAGACA+AGG | 0.625229 | 1_1:+34103783 | Msa0019580:CDS |
AATTCAATAATGGCAGAACA+TGG | 0.630080 | 1_1:+34103269 | Msa0019580:CDS |
TGGTTTCGAAGGCCGGACGA+AGG | 0.632020 | 1_1:-34105510 | None:intergenic |
GTATTGTTAACCCTCACTGA+TGG | 0.633663 | 1_1:+34104606 | Msa0019580:CDS |
GATACTGAGCATTACGATCG+TGG | 0.634209 | 1_1:-34104090 | None:intergenic |
CGTAACAGGTCGAAATTGCG+TGG | 0.638158 | 1_1:+34101725 | Msa0019580:intron |
ACCAAGATGGGAATGTCACA+GGG | 0.639741 | 1_1:+34104811 | Msa0019580:CDS |
AAGGAAAAGGAGACAAGGGA+TGG | 0.647444 | 1_1:+34103788 | Msa0019580:CDS |
CTTGCATATCCAACTTCCCA+CGG | 0.647797 | 1_1:-34103907 | None:intergenic |
AACGATAATAAACAGGATCA+CGG | 0.648773 | 1_1:-34103946 | None:intergenic |
CGATTTGCACCTGAACCCAG+TGG | 0.648921 | 1_1:+34103494 | Msa0019580:CDS |
AATATGCGAAATCTTAAGCG+TGG | 0.649648 | 1_1:+34105440 | Msa0019580:CDS |
TTTCTCAGGACCATCAGTGA+GGG | 0.655675 | 1_1:-34104616 | None:intergenic |
GCGCACAATTCCTTGCACTG+TGG | 0.656501 | 1_1:-34104260 | None:intergenic |
GGAAGATCTATCTCTACCGA+AGG | 0.663050 | 1_1:-34103443 | None:intergenic |
CAGACACAGTGCGGTCATTG+CGG | 0.665880 | 1_1:+34104575 | Msa0019580:CDS |
GAAGTAACCTTGATGGATTG+GGG | 0.667338 | 1_1:+34104759 | Msa0019580:CDS |
GCGGCGATTACCGCTAACGG+TGG | 0.670603 | 1_1:-34101550 | None:intergenic |
TCAGTATCACAGGATTCAAG+AGG | 0.673861 | 1_1:+34104105 | Msa0019580:CDS |
GATGCGGCGATTACCGCTAA+CGG | 0.676425 | 1_1:-34101553 | None:intergenic |
ATTTCTCAGGACCATCAGTG+AGG | 0.679162 | 1_1:-34104617 | None:intergenic |
ACAAAAGGAAAAGGAGACAA+GGG | 0.680867 | 1_1:+34103784 | Msa0019580:CDS |
AATATCAAAATCTTGCACGA+TGG | 0.684460 | 1_1:+34103243 | Msa0019580:CDS |
CACAGGATTCAAGAGGACAT+GGG | 0.686727 | 1_1:+34104112 | Msa0019580:CDS |
CATCAACATATGCCTTACCC+TGG | 0.687143 | 1_1:-34103748 | None:intergenic |
AAATGATTGCAGGATCAGAG+AGG | 0.689019 | 1_1:+34103867 | Msa0019580:CDS |
ATGATTGCAGGATCAGAGAG+GGG | 0.699155 | 1_1:+34103869 | Msa0019580:CDS |
GTTGGAGAAGAGAAATGTGG+GGG | 0.702868 | 1_1:-34101629 | None:intergenic |
GTGCAAGGAATTGTGCGCAG+AGG | 0.703043 | 1_1:+34104265 | Msa0019580:CDS |
CGTTGGAGAAGAGAAATGTG+GGG | 0.703973 | 1_1:-34101630 | None:intergenic |
TGTATGTCCCAGACACAGTG+CGG | 0.743276 | 1_1:+34104566 | Msa0019580:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTCTTTTTTTTCTTTAGA+AGG | - | chr1_1:34103617-34103636 | None:intergenic | 15.0% |
!! | TAAAGAAAAAAAAGAATTTG+TGG | + | chr1_1:34103619-34103638 | Msa0019580:CDS | 15.0% |
!! | ATACTTGTTCAAAAATAAAT+TGG | - | chr1_1:34104312-34104331 | None:intergenic | 15.0% |
!!! | TTTCTTCTTTTTTACTTTTT+TGG | + | chr1_1:34104430-34104449 | Msa0019580:intron | 15.0% |
!!! | GTCAATAATTTTTTTATTGA+TGG | - | chr1_1:34104544-34104563 | None:intergenic | 15.0% |
!! | ACAAATTCTTATAACATATA+TGG | - | chr1_1:34105099-34105118 | None:intergenic | 15.0% |
!!! | ATGTTATAAGAATTTGTTAA+CGG | + | chr1_1:34105102-34105121 | Msa0019580:intron | 15.0% |
!! | ATATATCAGAAAATATAACC+TGG | - | chr1_1:34101829-34101848 | None:intergenic | 20.0% |
!!! | ATAATTTTGAGTTTATAGCT+TGG | + | chr1_1:34102002-34102021 | Msa0019580:intron | 20.0% |
!!! | GATTTTTCTGATAACATTAA+GGG | + | chr1_1:34103410-34103429 | Msa0019580:CDS | 20.0% |
!! | ATAAAAGATGTTAAGATGTT+GGG | + | chr1_1:34103650-34103669 | Msa0019580:CDS | 20.0% |
!! | ATAAGAAATACAGTAGAATA+TGG | + | chr1_1:34104388-34104407 | Msa0019580:intron | 20.0% |
!! | TTTGATTCTGTCATTAATAA+AGG | + | chr1_1:34104981-34105000 | Msa0019580:intron | 20.0% |
!! | ATTCTTATAACATATATGGA+AGG | - | chr1_1:34105095-34105114 | None:intergenic | 20.0% |
!! | AGCAAATAAAAACTTAAACA+GGG | - | chr1_1:34105308-34105327 | None:intergenic | 20.0% |
!! | AAGCAAATAAAAACTTAAAC+AGG | - | chr1_1:34105309-34105328 | None:intergenic | 20.0% |
! | AATTTGCAATTATTCGTAAC+AGG | + | chr1_1:34101711-34101730 | Msa0019580:intron | 25.0% |
!!! | ATATTTTGGCCATAGAAATT+AGG | - | chr1_1:34101794-34101813 | None:intergenic | 25.0% |
!!! | GGCTAGTTTGAAAAATATTT+TGG | - | chr1_1:34101808-34101827 | None:intergenic | 25.0% |
!!! | AAATATTTTTCAAACTAGCC+AGG | + | chr1_1:34101808-34101827 | Msa0019580:CDS | 25.0% |
!! | ATAAGTGATGTTGTCTTTTA+AGG | + | chr1_1:34101890-34101909 | Msa0019580:intron | 25.0% |
! | ATAAGTTGTTTAACCAAACA+GGG | - | chr1_1:34101916-34101935 | None:intergenic | 25.0% |
! | AATAAGTTGTTTAACCAAAC+AGG | - | chr1_1:34101917-34101936 | None:intergenic | 25.0% |
!! | TGGTATTTATAGCCTTTTAT+GGG | + | chr1_1:34102160-34102179 | Msa0019580:intron | 25.0% |
!! | AGTCTTTAGGAATATATTGA+CGG | + | chr1_1:34102347-34102366 | Msa0019580:intron | 25.0% |
! | TATTTACTGCTTATTTGGAT+TGG | - | chr1_1:34102537-34102556 | None:intergenic | 25.0% |
! | AGCAATATTTACTGCTTATT+TGG | - | chr1_1:34102542-34102561 | None:intergenic | 25.0% |
!! | ATGATATTTCTGTAGTTCAA+GGG | - | chr1_1:34102608-34102627 | None:intergenic | 25.0% |
!! | TATGATATTTCTGTAGTTCA+AGG | - | chr1_1:34102609-34102628 | None:intergenic | 25.0% |
! | TGATTGTTTGACAATAGTTT+AGG | + | chr1_1:34102711-34102730 | Msa0019580:intron | 25.0% |
! | GATTGTTTGACAATAGTTTA+GGG | + | chr1_1:34102712-34102731 | Msa0019580:intron | 25.0% |
! | TCAAAGAAACAATTGAATGA+AGG | - | chr1_1:34102860-34102879 | None:intergenic | 25.0% |
! | TCAACATATATTGGCAAAAA+AGG | + | chr1_1:34103314-34103333 | Msa0019580:CDS | 25.0% |
! | ATATATTGGCAAAAAAGGAT+CGG | + | chr1_1:34103319-34103338 | Msa0019580:CDS | 25.0% |
! | ATAAAGTGAAGAATGTGAAT+GGG | + | chr1_1:34103387-34103406 | Msa0019580:CDS | 25.0% |
!! | GGATTTTTCTGATAACATTA+AGG | + | chr1_1:34103409-34103428 | Msa0019580:CDS | 25.0% |
! | GATAAAAGATGTTAAGATGT+TGG | + | chr1_1:34103649-34103668 | Msa0019580:CDS | 25.0% |
!! | TAGAGGAGAATTTGAAATTA+TGG | + | chr1_1:34103840-34103859 | Msa0019580:CDS | 25.0% |
! | ATCAAAAAATCTCAATCTCA+TGG | + | chr1_1:34104500-34104519 | Msa0019580:CDS | 25.0% |
! | CTTATCTATTTCCTTTACTA+TGG | - | chr1_1:34104790-34104809 | None:intergenic | 25.0% |
! | CATAGTAAAGGAAATAGATA+AGG | + | chr1_1:34104788-34104807 | Msa0019580:CDS | 25.0% |
ATTGATAGATCATAGAAACG+AGG | - | chr1_1:34101691-34101710 | None:intergenic | 30.0% | |
ATGATAAACACTTACGTAGT+AGG | + | chr1_1:34101963-34101982 | Msa0019580:intron | 30.0% | |
TGATAAACACTTACGTAGTA+GGG | + | chr1_1:34101964-34101983 | Msa0019580:intron | 30.0% | |
! | TACTTGCAAAAAGCACAATA+AGG | + | chr1_1:34102066-34102085 | Msa0019580:intron | 30.0% |
AAAGCACAATAAGGAATACT+AGG | + | chr1_1:34102075-34102094 | Msa0019580:intron | 30.0% | |
AAGCACAATAAGGAATACTA+GGG | + | chr1_1:34102076-34102095 | Msa0019580:intron | 30.0% | |
! | GTGGTATTTATAGCCTTTTA+TGG | + | chr1_1:34102159-34102178 | Msa0019580:intron | 30.0% |
TCCTTGGTTTCTTTCAAAAT+AGG | + | chr1_1:34102659-34102678 | Msa0019580:intron | 30.0% | |
!! | TCCTATTTTGAAAGAAACCA+AGG | - | chr1_1:34102663-34102682 | None:intergenic | 30.0% |
AATAGGAGAGTGATAGTTTA+AGG | + | chr1_1:34102676-34102695 | Msa0019580:intron | 30.0% | |
GTCAAACAATCAGTCAATTT+GGG | - | chr1_1:34102703-34102722 | None:intergenic | 30.0% | |
TGTCAAACAATCAGTCAATT+TGG | - | chr1_1:34102704-34102723 | None:intergenic | 30.0% | |
TTGTTTAGGGATCAAATTGA+AGG | + | chr1_1:34102785-34102804 | Msa0019580:intron | 30.0% | |
! | CAAGTATATTGATGACTACT+TGG | + | chr1_1:34102950-34102969 | Msa0019580:CDS | 30.0% |
TTTAGTAGTAGTAGTATCAC+AGG | - | chr1_1:34103085-34103104 | None:intergenic | 30.0% | |
AGAGAAAGAATCACTAAACA+AGG | - | chr1_1:34103122-34103141 | None:intergenic | 30.0% | |
CCATCAAGTTTCATAGATTA+AGG | - | chr1_1:34103149-34103168 | None:intergenic | 30.0% | |
CCTTAATCTATGAAACTTGA+TGG | + | chr1_1:34103146-34103165 | Msa0019580:intron | 30.0% | |
AATATCAAAATCTTGCACGA+TGG | + | chr1_1:34103243-34103262 | Msa0019580:CDS | 30.0% | |
ACGATGGTACAATTCAATAA+TGG | + | chr1_1:34103259-34103278 | Msa0019580:CDS | 30.0% | |
AATTCAATAATGGCAGAACA+TGG | + | chr1_1:34103269-34103288 | Msa0019580:CDS | 30.0% | |
GAAGTCACATCAACATATAT+TGG | + | chr1_1:34103305-34103324 | Msa0019580:CDS | 30.0% | |
TATATTGGCAAAAAAGGATC+GGG | + | chr1_1:34103320-34103339 | Msa0019580:CDS | 30.0% | |
GATAAAGTGAAGAATGTGAA+TGG | + | chr1_1:34103386-34103405 | Msa0019580:CDS | 30.0% | |
TAAAGTGAAGAATGTGAATG+GGG | + | chr1_1:34103388-34103407 | Msa0019580:CDS | 30.0% | |
! | TTTTCTGATAACATTAAGGG+AGG | + | chr1_1:34103413-34103432 | Msa0019580:CDS | 30.0% |
GCTGAAAAATTAATTAGCCA+GGG | + | chr1_1:34103731-34103750 | Msa0019580:CDS | 30.0% | |
AAAATTAATTAGCCAGGGTA+AGG | + | chr1_1:34103736-34103755 | Msa0019580:CDS | 30.0% | |
TCAAATTCTCCTCTATACTA+TGG | - | chr1_1:34103835-34103854 | None:intergenic | 30.0% | |
! | GGAGAATTTGAAATTATGGA+AGG | + | chr1_1:34103844-34103863 | Msa0019580:CDS | 30.0% |
AACGATAATAAACAGGATCA+CGG | - | chr1_1:34103949-34103968 | None:intergenic | 30.0% | |
GATTTGCAACGATAATAAAC+AGG | - | chr1_1:34103956-34103975 | None:intergenic | 30.0% | |
AGTTGGATACACTTTATACT+TGG | - | chr1_1:34104002-34104021 | None:intergenic | 30.0% | |
AAAAGAGCAAAGTTGAATCA+TGG | + | chr1_1:34104221-34104240 | Msa0019580:CDS | 30.0% | |
AAAGAGCAAAGTTGAATCAT+GGG | + | chr1_1:34104222-34104241 | Msa0019580:CDS | 30.0% | |
! | AGTGATCAACATTTTAAGCA+TGG | - | chr1_1:34104463-34104482 | None:intergenic | 30.0% |
AAAATCTCAATCTCATGGAA+TGG | + | chr1_1:34104505-34104524 | Msa0019580:CDS | 30.0% | |
AAATCTCAATCTCATGGAAT+GGG | + | chr1_1:34104506-34104525 | Msa0019580:CDS | 30.0% | |
AAGCTACCACATATACAAAA+AGG | + | chr1_1:34104691-34104710 | Msa0019580:CDS | 30.0% | |
! | CCATATCCTTTTTGTATATG+TGG | - | chr1_1:34104700-34104719 | None:intergenic | 30.0% |
CCACATATACAAAAAGGATA+TGG | + | chr1_1:34104697-34104716 | Msa0019580:CDS | 30.0% | |
AAATAGATAAGGACCAAGAT+GGG | + | chr1_1:34104799-34104818 | Msa0019580:CDS | 30.0% | |
TTACCTCATTACGAAGAAAA+AGG | + | chr1_1:34104941-34104960 | Msa0019580:CDS | 30.0% | |
! | ATACCTTTTTCTTCGTAATG+AGG | - | chr1_1:34104947-34104966 | None:intergenic | 30.0% |
ATATATGGAAGGTTCATGAA+AGG | - | chr1_1:34105084-34105103 | None:intergenic | 30.0% | |
TATAAAACTAGTTCCATGGA+AGG | - | chr1_1:34105150-34105169 | None:intergenic | 30.0% | |
GGACAATAATAAGGACAATA+TGG | - | chr1_1:34105176-34105195 | None:intergenic | 30.0% | |
!! | GTATGCACTTTTAAGAGAAT+GGG | - | chr1_1:34105207-34105226 | None:intergenic | 30.0% |
AAAAAGGAGATTCTAGCATA+TGG | + | chr1_1:34105410-34105429 | Msa0019580:CDS | 30.0% | |
GTCAATGGATGAAGAAAATC+CGG | - | chr1_1:34101587-34101606 | None:intergenic | 35.0% | |
GATCATAGAAACGAGGAAAA+GGG | - | chr1_1:34101684-34101703 | None:intergenic | 35.0% | |
AGATCATAGAAACGAGGAAA+AGG | - | chr1_1:34101685-34101704 | None:intergenic | 35.0% | |
ATGTAACGCAGAAGAACAAA+TGG | - | chr1_1:34101752-34101771 | None:intergenic | 35.0% | |
TTTGTTCTTCTGCGTTACAT+TGG | + | chr1_1:34101752-34101771 | Msa0019580:CDS | 35.0% | |
GCAACTCTTCCTAATTTCTA+TGG | + | chr1_1:34101782-34101801 | Msa0019580:CDS | 35.0% | |
AGGGTTTAGTATCGTATTCT+AGG | + | chr1_1:34102095-34102114 | Msa0019580:intron | 35.0% | |
GGGTTTAGTATCGTATTCTA+GGG | + | chr1_1:34102096-34102115 | Msa0019580:intron | 35.0% | |
CTAGGGTTTAGACTGATTAT+TGG | + | chr1_1:34102113-34102132 | Msa0019580:intron | 35.0% | |
! | TTTATAGCCTTTTATGGGTC+TGG | + | chr1_1:34102165-34102184 | Msa0019580:intron | 35.0% |
TTACTTAGGCAGCAAGTAAT+AGG | + | chr1_1:34102195-34102214 | Msa0019580:intron | 35.0% | |
TACTTAGGCAGCAAGTAATA+GGG | + | chr1_1:34102196-34102215 | Msa0019580:intron | 35.0% | |
ATCGAGAATAGTTTCAAGAC+TGG | - | chr1_1:34102633-34102652 | None:intergenic | 35.0% | |
TATTCTCGATAGTTAGTCCT+TGG | + | chr1_1:34102643-34102662 | Msa0019580:intron | 35.0% | |
!! | TGTTAGTTGTTGTTTGCTTC+TGG | + | chr1_1:34102825-34102844 | Msa0019580:intron | 35.0% |
! | TGCATCCATTTTCAAAAGCA+GGG | - | chr1_1:34102932-34102951 | None:intergenic | 35.0% |
! | TTGCATCCATTTTCAAAAGC+AGG | - | chr1_1:34102933-34102952 | None:intergenic | 35.0% |
!!! | GAGAAGCGTACATTTTTAGT+TGG | + | chr1_1:34102972-34102991 | Msa0019580:CDS | 35.0% |
AGGTGAAGATGAATAGGTAT+AGG | - | chr1_1:34103065-34103084 | None:intergenic | 35.0% | |
TATCACAGGTGAAGATGAAT+AGG | - | chr1_1:34103071-34103090 | None:intergenic | 35.0% | |
! | TATTTTGCTGAGCGATACAA+AGG | + | chr1_1:34103560-34103579 | Msa0019580:CDS | 35.0% |
GGCTGAAAAATTAATTAGCC+AGG | + | chr1_1:34103730-34103749 | Msa0019580:CDS | 35.0% | |
AACAAAAGGAAAAGGAGACA+AGG | + | chr1_1:34103783-34103802 | Msa0019580:CDS | 35.0% | |
ACAAAAGGAAAAGGAGACAA+GGG | + | chr1_1:34103784-34103803 | Msa0019580:CDS | 35.0% | |
ATGCAGAAACCATAGTATAG+AGG | + | chr1_1:34103823-34103842 | Msa0019580:CDS | 35.0% | |
TTATGGAAGGAAATGATTGC+AGG | + | chr1_1:34103857-34103876 | Msa0019580:CDS | 35.0% | |
TCAATGCCTCATCATAGAAT+TGG | + | chr1_1:34103974-34103993 | Msa0019580:CDS | 35.0% | |
TTGGATCCAATTCTATGATG+AGG | - | chr1_1:34103983-34104002 | None:intergenic | 35.0% | |
TTCTCATCTACGAATTTAGC+CGG | + | chr1_1:34104146-34104165 | Msa0019580:CDS | 35.0% | |
TTGATCACTGTTGTTGTACA+GGG | + | chr1_1:34104474-34104493 | Msa0019580:intron | 35.0% | |
ACAAAAACTATGAAGCTGCT+GGG | + | chr1_1:34104664-34104683 | Msa0019580:CDS | 35.0% | |
GAAATAGATAAGGACCAAGA+TGG | + | chr1_1:34104798-34104817 | Msa0019580:CDS | 35.0% | |
CTAACTAGTTCATCTAACTC+AGG | - | chr1_1:34104900-34104919 | None:intergenic | 35.0% | |
AATCAAACTCCATCAATGTC+AGG | - | chr1_1:34104923-34104942 | None:intergenic | 35.0% | |
TTGTGTCAGTAGAAATCGTA+TGG | - | chr1_1:34105050-34105069 | None:intergenic | 35.0% | |
GTTCATGAAAGGTTCATGAT+TGG | - | chr1_1:34105073-34105092 | None:intergenic | 35.0% | |
GTGCTATAAAACTAGTTCCA+TGG | - | chr1_1:34105154-34105173 | None:intergenic | 35.0% | |
GATCAGGATGGACAATAATA+AGG | - | chr1_1:34105185-34105204 | None:intergenic | 35.0% | |
!! | ACTTTTAAGAGAATGGGATC+AGG | - | chr1_1:34105201-34105220 | None:intergenic | 35.0% |
!! | GGTATGCACTTTTAAGAGAA+TGG | - | chr1_1:34105208-34105227 | None:intergenic | 35.0% |
AACCAAAGTGTGTATGCATA+GGG | - | chr1_1:34105229-34105248 | None:intergenic | 35.0% | |
AGCTTGAGAAAGGAAAGAAT+GGG | + | chr1_1:34105336-34105355 | Msa0019580:intron | 35.0% | |
!!! | GAATCTCCTTTTTTGTGCAA+GGG | - | chr1_1:34105403-34105422 | None:intergenic | 35.0% |
!!! | AGAATCTCCTTTTTTGTGCA+AGG | - | chr1_1:34105404-34105423 | None:intergenic | 35.0% |
ACGCTTAAGATTTCGCATAT+TGG | - | chr1_1:34105441-34105460 | None:intergenic | 35.0% | |
AATATGCGAAATCTTAAGCG+TGG | + | chr1_1:34105440-34105459 | Msa0019580:CDS | 35.0% | |
!! | AATAACACGATTGGTTTCGA+AGG | - | chr1_1:34105524-34105543 | None:intergenic | 35.0% |
GGGTGAAGAGATATGAGAAA+GGG | - | chr1_1:34101664-34101683 | None:intergenic | 40.0% | |
AGGGTGAAGAGATATGAGAA+AGG | - | chr1_1:34101665-34101684 | None:intergenic | 40.0% | |
!!! | TTGTCTTTTAAGGCCCTGTT+TGG | + | chr1_1:34101900-34101919 | Msa0019580:intron | 40.0% |
AGGCTATAAATACCACCCTT+GGG | - | chr1_1:34102155-34102174 | None:intergenic | 40.0% | |
AAGGCTATAAATACCACCCT+TGG | - | chr1_1:34102156-34102175 | None:intergenic | 40.0% | |
ACTTAGGCAGCAAGTAATAG+GGG | + | chr1_1:34102197-34102216 | Msa0019580:intron | 40.0% | |
!!! | AGCAAGTAATAGGGGTGTTT+TGG | + | chr1_1:34102205-34102224 | Msa0019580:intron | 40.0% |
!!! | GCAAGTAATAGGGGTGTTTT+GGG | + | chr1_1:34102206-34102225 | Msa0019580:intron | 40.0% |
!!! | TAGGGGTGTTTTGGGTATTT+AGG | + | chr1_1:34102214-34102233 | Msa0019580:intron | 40.0% |
!!! | AGGGGTGTTTTGGGTATTTA+GGG | + | chr1_1:34102215-34102234 | Msa0019580:intron | 40.0% |
CAAGTTCTTCCAAACAGTCT+CGG | + | chr1_1:34102479-34102498 | Msa0019580:intron | 40.0% | |
! | ATACGTTTTCCGAGACTGTT+TGG | - | chr1_1:34102491-34102510 | None:intergenic | 40.0% |
CTTGAGTGAACCTTCAGTTT+GGG | + | chr1_1:34102560-34102579 | Msa0019580:intron | 40.0% | |
TAGTTCAGAGACAAAGTTCG+AGG | + | chr1_1:34102754-34102773 | Msa0019580:intron | 40.0% | |
AGTTCAGAGACAAAGTTCGA+GGG | + | chr1_1:34102755-34102774 | Msa0019580:intron | 40.0% | |
TATGCACATGTACTCTCATC+AGG | + | chr1_1:34102906-34102925 | Msa0019580:CDS | 40.0% | |
AATCGCAGATCTAGCTATCT+GGG | + | chr1_1:34103007-34103026 | Msa0019580:CDS | 40.0% | |
! | GATCTACACTATGCCTTTTC+AGG | + | chr1_1:34103182-34103201 | Msa0019580:intron | 40.0% |
TTCACTTTATCCTTGACGAC+TGG | - | chr1_1:34103377-34103396 | None:intergenic | 40.0% | |
TCTGATAACATTAAGGGAGG+AGG | + | chr1_1:34103416-34103435 | Msa0019580:CDS | 40.0% | |
! | ACTTTTCCAACTTCAGCATC+TGG | - | chr1_1:34103467-34103486 | None:intergenic | 40.0% |
CCAATATGAAGATAGCCACT+GGG | - | chr1_1:34103512-34103531 | None:intergenic | 40.0% | |
TCCAATATGAAGATAGCCAC+TGG | - | chr1_1:34103513-34103532 | None:intergenic | 40.0% | |
TCCACGTGAACAAAAGGAAA+AGG | + | chr1_1:34103775-34103794 | Msa0019580:CDS | 40.0% | |
! | TCCTTTTCCTTTTGTTCACG+TGG | - | chr1_1:34103779-34103798 | None:intergenic | 40.0% |
AAATGATTGCAGGATCAGAG+AGG | + | chr1_1:34103867-34103886 | Msa0019580:CDS | 40.0% | |
AATGATTGCAGGATCAGAGA+GGG | + | chr1_1:34103868-34103887 | Msa0019580:CDS | 40.0% | |
GGACAGGCAAAATCATAAGT+TGG | - | chr1_1:34104019-34104038 | None:intergenic | 40.0% | |
ATCGTAATGCTCAGTATCAC+AGG | + | chr1_1:34104095-34104114 | Msa0019580:CDS | 40.0% | |
TCAGTATCACAGGATTCAAG+AGG | + | chr1_1:34104105-34104124 | Msa0019580:CDS | 40.0% | |
CGAATTTAGCCGGTTGAATA+TGG | + | chr1_1:34104156-34104175 | Msa0019580:CDS | 40.0% | |
GAGTGTAGACCATATTCAAC+CGG | - | chr1_1:34104168-34104187 | None:intergenic | 40.0% | |
TCAGCAAACGAAAGCTTCTA+TGG | + | chr1_1:34104191-34104210 | Msa0019580:CDS | 40.0% | |
GTTGATCACTGTTGTTGTAC+AGG | + | chr1_1:34104473-34104492 | Msa0019580:intron | 40.0% | |
TGATCACTGTTGTTGTACAG+GGG | + | chr1_1:34104475-34104494 | Msa0019580:intron | 40.0% | |
GTATTGTTAACCCTCACTGA+TGG | + | chr1_1:34104606-34104625 | Msa0019580:CDS | 40.0% | |
ATGCGGACAAATGATTTCTC+AGG | - | chr1_1:34104633-34104652 | None:intergenic | 40.0% | |
! | TTTTGTGCCTAGGTATGATG+CGG | - | chr1_1:34104650-34104669 | None:intergenic | 40.0% |
! | GCTTCATAGTTTTTGTGCCT+AGG | - | chr1_1:34104660-34104679 | None:intergenic | 40.0% |
CACAAAAACTATGAAGCTGC+TGG | + | chr1_1:34104663-34104682 | Msa0019580:CDS | 40.0% | |
! | AGGAAGTAACCTTGATGGAT+TGG | + | chr1_1:34104757-34104776 | Msa0019580:CDS | 40.0% |
!! | GGAAGTAACCTTGATGGATT+GGG | + | chr1_1:34104758-34104777 | Msa0019580:CDS | 40.0% |
!! | GAAGTAACCTTGATGGATTG+GGG | + | chr1_1:34104759-34104778 | Msa0019580:CDS | 40.0% |
TTGGGGAAATGCCATAGTAA+AGG | + | chr1_1:34104776-34104795 | Msa0019580:CDS | 40.0% | |
! | AGTGGTGTTTTACATCCTGA+AGG | + | chr1_1:34104837-34104856 | Msa0019580:CDS | 40.0% |
! | ACTAGTTAGCCTGACATTGA+TGG | + | chr1_1:34104911-34104930 | Msa0019580:CDS | 40.0% |
! | CGAAGAAAAAGGTATGTGCT+TGG | + | chr1_1:34104952-34104971 | Msa0019580:intron | 40.0% |
TTCCATGGAAGGTTCATGAA+AGG | - | chr1_1:34105139-34105158 | None:intergenic | 40.0% | |
TTAAGAGAATGGGATCAGGA+TGG | - | chr1_1:34105197-34105216 | None:intergenic | 40.0% | |
TACCCTATGCATACACACTT+TGG | + | chr1_1:34105224-34105243 | Msa0019580:intron | 40.0% | |
GAACCAAAGTGTGTATGCAT+AGG | - | chr1_1:34105230-34105249 | None:intergenic | 40.0% | |
ACTTAAACAGGGAAGAAAGC+AGG | - | chr1_1:34105297-34105316 | None:intergenic | 40.0% | |
! | CTTTGTTTGCAGCTTGAGAA+AGG | + | chr1_1:34105326-34105345 | Msa0019580:intron | 40.0% |
CAGCTTGAGAAAGGAAAGAA+TGG | + | chr1_1:34105335-34105354 | Msa0019580:intron | 40.0% | |
GCTTAACCCTTGCACAAAAA+AGG | + | chr1_1:34105394-34105413 | Msa0019580:CDS | 40.0% | |
TGGAGAGAAAGGGATATTTC+AGG | + | chr1_1:34105477-34105496 | Msa0019580:CDS | 40.0% | |
GGGATTGCAAATAACACGAT+TGG | - | chr1_1:34105533-34105552 | None:intergenic | 40.0% | |
!! | GTGTTATTTGCAATCCCAGA+TGG | + | chr1_1:34105536-34105555 | Msa0019580:CDS | 40.0% |
GTTGGAGAAGAGAAATGTGG+GGG | - | chr1_1:34101632-34101651 | None:intergenic | 45.0% | |
CGTTGGAGAAGAGAAATGTG+GGG | - | chr1_1:34101633-34101652 | None:intergenic | 45.0% | |
CCGTTGGAGAAGAGAAATGT+GGG | - | chr1_1:34101634-34101653 | None:intergenic | 45.0% | |
CCCACATTTCTCTTCTCCAA+CGG | + | chr1_1:34101631-34101650 | Msa0019580:CDS | 45.0% | |
CCACATTTCTCTTCTCCAAC+GGG | + | chr1_1:34101632-34101651 | Msa0019580:CDS | 45.0% | |
CTTACGTAGTAGGGTCTGTT+TGG | + | chr1_1:34101973-34101992 | Msa0019580:intron | 45.0% | |
CCACAAACCAGACCCATAAA+AGG | - | chr1_1:34102175-34102194 | None:intergenic | 45.0% | |
!! | CCTTTTATGGGTCTGGTTTG+TGG | + | chr1_1:34102172-34102191 | Msa0019580:intron | 45.0% |
! | GGTCTGGTTTGTGGTTACTT+AGG | + | chr1_1:34102181-34102200 | Msa0019580:intron | 45.0% |
!! | GGGGTGTTTTGGGTATTTAG+GGG | + | chr1_1:34102216-34102235 | Msa0019580:intron | 45.0% |
! | AGGCTTCTAGAAGCGAACAA+AGG | + | chr1_1:34102250-34102269 | Msa0019580:intron | 45.0% |
! | CTTCTAGAAGCGAACAAAGG+CGG | + | chr1_1:34102253-34102272 | Msa0019580:intron | 45.0% |
AAACGCGTCTTTGAGCCTTA+TGG | + | chr1_1:34102287-34102306 | Msa0019580:intron | 45.0% | |
GCTTGAGTGAACCTTCAGTT+TGG | + | chr1_1:34102559-34102578 | Msa0019580:intron | 45.0% | |
GTCCCACTTTCTCTCCTATT+GGG | + | chr1_1:34102582-34102601 | Msa0019580:intron | 45.0% | |
TCGAGGGTGAGTGATTGTTT+AGG | + | chr1_1:34102771-34102790 | Msa0019580:intron | 45.0% | |
CGAGGGTGAGTGATTGTTTA+GGG | + | chr1_1:34102772-34102791 | Msa0019580:intron | 45.0% | |
!! | TCAGGCCCTGCTTTTGAAAA+TGG | + | chr1_1:34102924-34102943 | Msa0019580:CDS | 45.0% |
CAATCGCAGATCTAGCTATC+TGG | + | chr1_1:34103006-34103025 | Msa0019580:CDS | 45.0% | |
TCTCTTTCCAGCACCTGAAA+AGG | - | chr1_1:34103198-34103217 | None:intergenic | 45.0% | |
!! | TTTCAGGTGCTGGAAAGAGA+TGG | + | chr1_1:34103198-34103217 | Msa0019580:intron | 45.0% |
!! | TTCAGGTGCTGGAAAGAGAT+GGG | + | chr1_1:34103199-34103218 | Msa0019580:intron | 45.0% |
GAAAGAGATGGGAAAGCTTG+AGG | + | chr1_1:34103210-34103229 | Msa0019580:CDS | 45.0% | |
GGAAGATCTATCTCTACCGA+AGG | - | chr1_1:34103446-34103465 | None:intergenic | 45.0% | |
GATCTTCCAGATGCTGAAGT+TGG | + | chr1_1:34103458-34103477 | Msa0019580:CDS | 45.0% | |
CCCAGTGGCTATCTTCATAT+TGG | + | chr1_1:34103509-34103528 | Msa0019580:CDS | 45.0% | |
!! | CTTCCCTGAGTTGATGAAAC+TGG | + | chr1_1:34103709-34103728 | Msa0019580:CDS | 45.0% |
CAGCCAGTTTCATCAACTCA+GGG | - | chr1_1:34103715-34103734 | None:intergenic | 45.0% | |
TCAGCCAGTTTCATCAACTC+AGG | - | chr1_1:34103716-34103735 | None:intergenic | 45.0% | |
CATCAACATATGCCTTACCC+TGG | - | chr1_1:34103751-34103770 | None:intergenic | 45.0% | |
TGACACTCCACGTGAACAAA+AGG | + | chr1_1:34103769-34103788 | Msa0019580:CDS | 45.0% | |
AAGGAAAAGGAGACAAGGGA+TGG | + | chr1_1:34103788-34103807 | Msa0019580:CDS | 45.0% | |
ATGATTGCAGGATCAGAGAG+GGG | + | chr1_1:34103869-34103888 | Msa0019580:CDS | 45.0% | |
CTTGCATATCCAACTTCCCA+CGG | - | chr1_1:34103910-34103929 | None:intergenic | 45.0% | |
!! | GGATCACGGAGTGATTTGTT+TGG | - | chr1_1:34103935-34103954 | None:intergenic | 45.0% |
ACGAGCATCAACAAATGGAC+AGG | - | chr1_1:34104035-34104054 | None:intergenic | 45.0% | |
CCTTCACGAGCATCAACAAA+TGG | - | chr1_1:34104040-34104059 | None:intergenic | 45.0% | |
! | CCATTTGTTGATGCTCGTGA+AGG | + | chr1_1:34104037-34104056 | Msa0019580:CDS | 45.0% |
! | AAGGTATCACTCATGCCCTT+CGG | + | chr1_1:34104056-34104075 | Msa0019580:CDS | 45.0% |
GTGGTATTCACTTGACCGAA+GGG | - | chr1_1:34104074-34104093 | None:intergenic | 45.0% | |
GATACTGAGCATTACGATCG+TGG | - | chr1_1:34104093-34104112 | None:intergenic | 45.0% | |
TCACAGGATTCAAGAGGACA+TGG | + | chr1_1:34104111-34104130 | Msa0019580:CDS | 45.0% | |
CACAGGATTCAAGAGGACAT+GGG | + | chr1_1:34104112-34104131 | Msa0019580:CDS | 45.0% | |
GATCACTGTTGTTGTACAGG+GGG | + | chr1_1:34104476-34104495 | Msa0019580:intron | 45.0% | |
TCATGGAATGGGACAAGCTA+TGG | + | chr1_1:34104517-34104536 | Msa0019580:CDS | 45.0% | |
TTTCTCAGGACCATCAGTGA+GGG | - | chr1_1:34104619-34104638 | None:intergenic | 45.0% | |
ATTTCTCAGGACCATCAGTG+AGG | - | chr1_1:34104620-34104639 | None:intergenic | 45.0% | |
CATTTGTCCGCATCATACCT+AGG | + | chr1_1:34104640-34104659 | Msa0019580:CDS | 45.0% | |
TACTTCCTCACCTGCTGATA+CGG | - | chr1_1:34104745-34104764 | None:intergenic | 45.0% | |
AGGTGAGGAAGTAACCTTGA+TGG | + | chr1_1:34104752-34104771 | Msa0019580:CDS | 45.0% | |
ACCAAGATGGGAATGTCACA+GGG | + | chr1_1:34104811-34104830 | Msa0019580:CDS | 45.0% | |
! | CCAAGTGAGCTTCAGTTTTG+TGG | - | chr1_1:34104874-34104893 | None:intergenic | 45.0% |
CCACAAAACTGAAGCTCACT+TGG | + | chr1_1:34104871-34104890 | Msa0019580:CDS | 45.0% | |
GACCTTTCATGAACCTTCCA+TGG | + | chr1_1:34105134-34105153 | Msa0019580:intron | 45.0% | |
TTGTGCAAGGGTTAAGCACA+GGG | - | chr1_1:34105391-34105410 | None:intergenic | 45.0% | |
TTTGTGCAAGGGTTAAGCAC+AGG | - | chr1_1:34105392-34105411 | None:intergenic | 45.0% | |
AGTATTGCAGCTGGAGAGAA+AGG | + | chr1_1:34105466-34105485 | Msa0019580:CDS | 45.0% | |
GTATTGCAGCTGGAGAGAAA+GGG | + | chr1_1:34105467-34105486 | Msa0019580:CDS | 45.0% | |
TATTTGCAATCCCAGATGGC+AGG | + | chr1_1:34105540-34105559 | Msa0019580:CDS | 45.0% | |
TGAAGAAAATCCGGCGAGCT+TGG | - | chr1_1:34101578-34101597 | None:intergenic | 50.0% | |
CCCGTTGGAGAAGAGAAATG+TGG | - | chr1_1:34101635-34101654 | None:intergenic | 50.0% | |
CGTAACAGGTCGAAATTGCG+TGG | + | chr1_1:34101725-34101744 | Msa0019580:intron | 50.0% | |
ATGCCTTGAGATCACTCCCA+AGG | + | chr1_1:34102136-34102155 | Msa0019580:intron | 50.0% | |
TGCCTTGAGATCACTCCCAA+GGG | + | chr1_1:34102137-34102156 | Msa0019580:intron | 50.0% | |
!! | GGTATTTAGGGGCGTTCTAG+AGG | + | chr1_1:34102227-34102246 | Msa0019580:intron | 50.0% |
!! | ATTTAGGGGCGTTCTAGAGG+AGG | + | chr1_1:34102230-34102249 | Msa0019580:intron | 50.0% |
GAACAAAGGCGGTGTCCTAA+CGG | + | chr1_1:34102264-34102283 | Msa0019580:intron | 50.0% | |
CTCAAAGACGCGTTTCCGTT+AGG | - | chr1_1:34102282-34102301 | None:intergenic | 50.0% | |
! | TTTGAGCCTTATGGCCCTTC+TGG | + | chr1_1:34102296-34102315 | Msa0019580:intron | 50.0% |
! | CTGGGAGGGTCTTAGTCTTT+AGG | + | chr1_1:34102334-34102353 | Msa0019580:intron | 50.0% |
GAAAGTGGGACCCAAACTGA+AGG | - | chr1_1:34102573-34102592 | None:intergenic | 50.0% | |
GGTCCCACTTTCTCTCCTAT+TGG | + | chr1_1:34102581-34102600 | Msa0019580:intron | 50.0% | |
GGCCCAATAGGAGAGAAAGT+GGG | - | chr1_1:34102587-34102606 | None:intergenic | 50.0% | |
CTGTAGTTCAAGGGCCCAAT+AGG | - | chr1_1:34102599-34102618 | None:intergenic | 50.0% | |
!!! | CACTATGCCTTTTCAGGTGC+TGG | + | chr1_1:34103188-34103207 | Msa0019580:intron | 50.0% |
!!! | TCTTTTGGCTTGGCTGCAGA+TGG | - | chr1_1:34103350-34103369 | None:intergenic | 50.0% |
!!! | TTGACGACTGGCTGGTCTTT+TGG | - | chr1_1:34103365-34103384 | None:intergenic | 50.0% |
AAAAGACCAGCCAGTCGTCA+AGG | + | chr1_1:34103364-34103383 | Msa0019580:CDS | 50.0% | |
CTTTATCCTTGACGACTGGC+TGG | - | chr1_1:34103373-34103392 | None:intergenic | 50.0% | |
TGAAGATAGCCACTGGGTTC+AGG | - | chr1_1:34103506-34103525 | None:intergenic | 50.0% | |
TGCTGAGCGATACAAAGGTC+AGG | + | chr1_1:34103565-34103584 | Msa0019580:CDS | 50.0% | |
GCTTGCAGTGTTATGTCCGT+GGG | + | chr1_1:34103891-34103910 | Msa0019580:CDS | 50.0% | |
GTGTTATGTCCGTGGGAAGT+TGG | + | chr1_1:34103898-34103917 | Msa0019580:CDS | 50.0% | |
CGTGGTATTCACTTGACCGA+AGG | - | chr1_1:34104075-34104094 | None:intergenic | 50.0% | |
CGCACAATTCCTTGCACTGT+GGG | - | chr1_1:34104262-34104281 | None:intergenic | 50.0% | |
! | CACTGTGTCTGGGACATACA+GGG | - | chr1_1:34104566-34104585 | None:intergenic | 50.0% |
TGTATGTCCCAGACACAGTG+CGG | + | chr1_1:34104566-34104585 | Msa0019580:CDS | 50.0% | |
GGCATTTCCCCAATCCATCA+AGG | - | chr1_1:34104769-34104788 | None:intergenic | 50.0% | |
GACCAAGATGGGAATGTCAC+AGG | + | chr1_1:34104810-34104829 | Msa0019580:CDS | 50.0% | |
ACCCTGTGACATTCCCATCT+TGG | - | chr1_1:34104815-34104834 | None:intergenic | 50.0% | |
GGGAATGTCACAGGGTTAAG+TGG | + | chr1_1:34104819-34104838 | Msa0019580:CDS | 50.0% | |
GTGGTCTTCACAGATCCTTC+AGG | - | chr1_1:34104855-34104874 | None:intergenic | 50.0% | |
ATGGACACGTGAATTGCTCG+TGG | - | chr1_1:34105031-34105050 | None:intergenic | 50.0% | |
!! | ACACGATTGGTTTCGAAGGC+CGG | - | chr1_1:34105520-34105539 | None:intergenic | 50.0% |
! | CGTGTTGGCAGGGAAGGAAA+GGG | - | chr1_1:34101530-34101549 | None:intergenic | 55.0% |
GATGCGGCGATTACCGCTAA+CGG | - | chr1_1:34101556-34101575 | None:intergenic | 55.0% | |
AAATCCGGCGAGCTTGGATG+CGG | - | chr1_1:34101572-34101591 | None:intergenic | 55.0% | |
!! | AGGAGGAAGGGAGGTGTCAA+TGG | - | chr1_1:34101602-34101621 | None:intergenic | 55.0% |
! | AGAAATGTGGGGGCGGATTC+AGG | - | chr1_1:34101622-34101641 | None:intergenic | 55.0% |
GGAGAAGAGAAATGTGGGGG+CGG | - | chr1_1:34101629-34101648 | None:intergenic | 55.0% | |
GAGAAAGGGAACGTACCCGT+TGG | - | chr1_1:34101650-34101669 | None:intergenic | 55.0% | |
CACCCTTGGGAGTGATCTCA+AGG | - | chr1_1:34102142-34102161 | None:intergenic | 55.0% | |
CTTGAGATCACTCCCAAGGG+TGG | + | chr1_1:34102140-34102159 | Msa0019580:intron | 55.0% | |
GGGCCCAATAGGAGAGAAAG+TGG | - | chr1_1:34102588-34102607 | None:intergenic | 55.0% | |
GCAGATCTAGCTATCTGGGC+AGG | + | chr1_1:34103011-34103030 | Msa0019580:CDS | 55.0% | |
!!! | GACTGGCTGGTCTTTTGGCT+TGG | - | chr1_1:34103360-34103379 | None:intergenic | 55.0% |
! | TAAGGGAGGAGGCATGCCTT+CGG | + | chr1_1:34103427-34103446 | Msa0019580:CDS | 55.0% |
CGATTTGCACCTGAACCCAG+TGG | + | chr1_1:34103494-34103513 | Msa0019580:CDS | 55.0% | |
GGCTTGCAGTGTTATGTCCG+TGG | + | chr1_1:34103890-34103909 | Msa0019580:CDS | 55.0% | |
CCTTGCACTGTGGGAAATCG+TGG | - | chr1_1:34104253-34104272 | None:intergenic | 55.0% | |
CCACGATTTCCCACAGTGCA+AGG | + | chr1_1:34104250-34104269 | Msa0019580:CDS | 55.0% | |
GCGCACAATTCCTTGCACTG+TGG | - | chr1_1:34104263-34104282 | None:intergenic | 55.0% | |
GTGCAAGGAATTGTGCGCAG+AGG | + | chr1_1:34104265-34104284 | Msa0019580:CDS | 55.0% | |
! | GCACTGTGTCTGGGACATAC+AGG | - | chr1_1:34104567-34104586 | None:intergenic | 55.0% |
GCAATGACCGCACTGTGTCT+GGG | - | chr1_1:34104576-34104595 | None:intergenic | 55.0% | |
CAGACACAGTGCGGTCATTG+CGG | + | chr1_1:34104575-34104594 | Msa0019580:CDS | 55.0% | |
AGAGTCCGTATCAGCAGGTG+AGG | + | chr1_1:34104737-34104756 | Msa0019580:CDS | 55.0% | |
!! | GCGTGGAGAAGTATTGCAGC+TGG | + | chr1_1:34105457-34105476 | Msa0019580:CDS | 55.0% |
GGTGTGATGTACCCTTCGTC+CGG | + | chr1_1:34105498-34105517 | Msa0019580:CDS | 55.0% | |
ATGTCTGCTGCCTGCCATCT+GGG | - | chr1_1:34105553-34105572 | None:intergenic | 55.0% | |
! | GCGTGTTGGCAGGGAAGGAA+AGG | - | chr1_1:34101531-34101550 | None:intergenic | 60.0% |
! | CTAACGGTGGCGTGTTGGCA+GGG | - | chr1_1:34101540-34101559 | None:intergenic | 60.0% |
TGCCAACACGCCACCGTTAG+CGG | + | chr1_1:34101540-34101559 | Msa0019580:CDS | 60.0% | |
TACCGCTAACGGTGGCGTGT+TGG | - | chr1_1:34101545-34101564 | None:intergenic | 60.0% | |
! | AATGTGGGGGCGGATTCAGG+AGG | - | chr1_1:34101619-34101638 | None:intergenic | 60.0% |
! | GAGCCTTATGGCCCTTCTGG+AGG | + | chr1_1:34102299-34102318 | Msa0019580:intron | 60.0% |
CGTCCTCCAGAAGGGCCATA+AGG | - | chr1_1:34102305-34102324 | None:intergenic | 60.0% | |
GACCTCAGCGTCCTCCAGAA+GGG | - | chr1_1:34102313-34102332 | None:intergenic | 60.0% | |
AGACCTCAGCGTCCTCCAGA+AGG | - | chr1_1:34102314-34102333 | None:intergenic | 60.0% | |
TGGAGGACGCTGAGGTCTCT+GGG | + | chr1_1:34102316-34102335 | Msa0019580:intron | 60.0% | |
GCTATCTGGGCAGGTCTTGC+AGG | + | chr1_1:34103020-34103039 | Msa0019580:CDS | 60.0% | |
CGCAATGACCGCACTGTGTC+TGG | - | chr1_1:34104577-34104596 | None:intergenic | 60.0% | |
GACGCAGAGTCCGTATCAGC+AGG | + | chr1_1:34104732-34104751 | Msa0019580:CDS | 60.0% | |
GGTTTCGAAGGCCGGACGAA+GGG | - | chr1_1:34105512-34105531 | None:intergenic | 60.0% | |
TGGTTTCGAAGGCCGGACGA+AGG | - | chr1_1:34105513-34105532 | None:intergenic | 60.0% | |
GATGTCTGCTGCCTGCCATC+TGG | - | chr1_1:34105554-34105573 | None:intergenic | 60.0% | |
! | GCTAACGGTGGCGTGTTGGC+AGG | - | chr1_1:34101541-34101560 | None:intergenic | 65.0% |
GCGGCGATTACCGCTAACGG+TGG | - | chr1_1:34101553-34101572 | None:intergenic | 65.0% | |
ATCGCCGCATCCAAGCTCGC+CGG | + | chr1_1:34101565-34101584 | Msa0019580:CDS | 65.0% | |
! | GGCGGATTCAGGAGGAAGGG+AGG | - | chr1_1:34101611-34101630 | None:intergenic | 65.0% |
! | GGGGGCGGATTCAGGAGGAA+GGG | - | chr1_1:34101614-34101633 | None:intergenic | 65.0% |
! | TGGGGGCGGATTCAGGAGGA+AGG | - | chr1_1:34101615-34101634 | None:intergenic | 65.0% |
CTGGAGGACGCTGAGGTCTC+TGG | + | chr1_1:34102315-34102334 | Msa0019580:intron | 65.0% | |
AGGACGCTGAGGTCTCTGGG+AGG | + | chr1_1:34102319-34102338 | Msa0019580:intron | 65.0% | |
! | GGACGCTGAGGTCTCTGGGA+GGG | + | chr1_1:34102320-34102339 | Msa0019580:intron | 65.0% |
! | CGGTGGCGTGTTGGCAGGGA+AGG | - | chr1_1:34101536-34101555 | None:intergenic | 70.0% |
! | GGCCCTTCTGGAGGACGCTG+AGG | + | chr1_1:34102308-34102327 | Msa0019580:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_1 | gene | 34101514 | 34105583 | 34101514 | ID=Msa0019580;Name=Msa0019580 |
chr1_1 | mRNA | 34101514 | 34105583 | 34101514 | ID=Msa0019580-mRNA-1;Parent=Msa0019580;Name=Msa0019580-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.6|0.33|1|1|1|6|0|742 |
chr1_1 | exon | 34101514 | 34101653 | 34101514 | ID=Msa0019580-mRNA-1:exon:10843;Parent=Msa0019580-mRNA-1 |
chr1_1 | exon | 34101733 | 34101829 | 34101733 | ID=Msa0019580-mRNA-1:exon:10844;Parent=Msa0019580-mRNA-1 |
chr1_1 | exon | 34102888 | 34103041 | 34102888 | ID=Msa0019580-mRNA-1:exon:10845;Parent=Msa0019580-mRNA-1 |
chr1_1 | exon | 34103204 | 34104327 | 34103204 | ID=Msa0019580-mRNA-1:exon:10846;Parent=Msa0019580-mRNA-1 |
chr1_1 | exon | 34104495 | 34104962 | 34104495 | ID=Msa0019580-mRNA-1:exon:10847;Parent=Msa0019580-mRNA-1 |
chr1_1 | exon | 34105338 | 34105583 | 34105338 | ID=Msa0019580-mRNA-1:exon:10848;Parent=Msa0019580-mRNA-1 |
chr1_1 | CDS | 34101514 | 34101653 | 34101514 | ID=Msa0019580-mRNA-1:cds;Parent=Msa0019580-mRNA-1 |
chr1_1 | CDS | 34101733 | 34101829 | 34101733 | ID=Msa0019580-mRNA-1:cds;Parent=Msa0019580-mRNA-1 |
chr1_1 | CDS | 34102888 | 34103041 | 34102888 | ID=Msa0019580-mRNA-1:cds;Parent=Msa0019580-mRNA-1 |
chr1_1 | CDS | 34103204 | 34104327 | 34103204 | ID=Msa0019580-mRNA-1:cds;Parent=Msa0019580-mRNA-1 |
chr1_1 | CDS | 34104495 | 34104962 | 34104495 | ID=Msa0019580-mRNA-1:cds;Parent=Msa0019580-mRNA-1 |
chr1_1 | CDS | 34105338 | 34105583 | 34105338 | ID=Msa0019580-mRNA-1:cds;Parent=Msa0019580-mRNA-1 |
Gene Sequence |
Protein sequence |