AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0019580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0019580 MtrunA17_Chr1g0193431 89.488 742 69 1 1 742 3 735 0.0 1376
Msa0019580 MtrunA17_Chr1g0209631 33.528 513 311 12 223 717 269 769 4.03e-67 236
Msa0019580 MtrunA17_Chr8g0337411 26.906 223 132 7 225 426 55 267 1.99e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0019580 AT5G26710.1 70.421 737 196 6 1 736 1 716 0.0 1087
Msa0019580 AT1G25350.1 32.227 512 320 10 223 717 269 770 4.71e-67 237
Msa0019580 AT1G25350.2 30.368 517 328 11 223 717 269 775 4.67e-58 211

Find 167 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAGGAGAATTTGAAATTA+TGG 0.211763 1_1:+34103840 Msa0019580:CDS
TTGACGACTGGCTGGTCTTT+TGG 0.223662 1_1:-34103362 None:intergenic
CGCAATGACCGCACTGTGTC+TGG 0.265682 1_1:-34104574 None:intergenic
CAATCGCAGATCTAGCTATC+TGG 0.266430 1_1:+34103006 Msa0019580:CDS
CTTATCTATTTCCTTTACTA+TGG 0.280813 1_1:-34104787 None:intergenic
TCAAATTCTCCTCTATACTA+TGG 0.289207 1_1:-34103832 None:intergenic
GCAACTCTTCCTAATTTCTA+TGG 0.300296 1_1:+34101782 Msa0019580:CDS
ACGCTTAAGATTTCGCATAT+TGG 0.307983 1_1:-34105438 None:intergenic
TTACCTCATTACGAAGAAAA+AGG 0.308169 1_1:+34104941 Msa0019580:CDS
TCAGCAAACGAAAGCTTCTA+TGG 0.315812 1_1:+34104191 Msa0019580:CDS
GCTATCTGGGCAGGTCTTGC+AGG 0.316994 1_1:+34103020 Msa0019580:CDS
CGAATTTAGCCGGTTGAATA+TGG 0.317857 1_1:+34104156 Msa0019580:CDS
TGGAGAGAAAGGGATATTTC+AGG 0.324909 1_1:+34105477 Msa0019580:CDS
GATGTCTGCTGCCTGCCATC+TGG 0.343011 1_1:-34105551 None:intergenic
TGAAGATAGCCACTGGGTTC+AGG 0.349425 1_1:-34103503 None:intergenic
GAAGTCACATCAACATATAT+TGG 0.353025 1_1:+34103305 Msa0019580:CDS
CCCAGTGGCTATCTTCATAT+TGG 0.358754 1_1:+34103509 Msa0019580:CDS
AAGCTACCACATATACAAAA+AGG 0.360107 1_1:+34104691 Msa0019580:CDS
GTGGTCTTCACAGATCCTTC+AGG 0.360979 1_1:-34104852 None:intergenic
TCAATGCCTCATCATAGAAT+TGG 0.379838 1_1:+34103974 Msa0019580:CDS
ACCCTGTGACATTCCCATCT+TGG 0.408163 1_1:-34104812 None:intergenic
CTTCCCTGAGTTGATGAAAC+TGG 0.410276 1_1:+34103709 Msa0019580:CDS
GGAAGTAACCTTGATGGATT+GGG 0.417880 1_1:+34104758 Msa0019580:CDS
AGTATTGCAGCTGGAGAGAA+AGG 0.419290 1_1:+34105466 Msa0019580:CDS
AGTTGGATACACTTTATACT+TGG 0.420137 1_1:-34103999 None:intergenic
ACACGATTGGTTTCGAAGGC+CGG 0.426191 1_1:-34105517 None:intergenic
GGATCACGGAGTGATTTGTT+TGG 0.426882 1_1:-34103932 None:intergenic
GCTAACGGTGGCGTGTTGGC+AGG 0.432833 1_1:-34101538 None:intergenic
ACTAGTTAGCCTGACATTGA+TGG 0.433753 1_1:+34104911 Msa0019580:CDS
TGAAGAAAATCCGGCGAGCT+TGG 0.433828 1_1:-34101575 None:intergenic
CTTTGTTTGCAGCTTGAGAA+AGG 0.435061 1_1:+34105326 Msa0019580:intron
GATTTGCAACGATAATAAAC+AGG 0.436698 1_1:-34103953 None:intergenic
AAAAGAGCAAAGTTGAATCA+TGG 0.437459 1_1:+34104221 Msa0019580:CDS
AGGAAGTAACCTTGATGGAT+TGG 0.439791 1_1:+34104757 Msa0019580:CDS
CCACATTTCTCTTCTCCAAC+GGG 0.442745 1_1:+34101632 Msa0019580:CDS
ACGATGGTACAATTCAATAA+TGG 0.446007 1_1:+34103259 Msa0019580:CDS
GATAAAAGATGTTAAGATGT+TGG 0.451442 1_1:+34103649 Msa0019580:CDS
CCACAAAACTGAAGCTCACT+TGG 0.452027 1_1:+34104871 Msa0019580:CDS
GTCAATGGATGAAGAAAATC+CGG 0.453714 1_1:-34101584 None:intergenic
TGCCAACACGCCACCGTTAG+CGG 0.455706 1_1:+34101540 Msa0019580:CDS
CAGCTTGAGAAAGGAAAGAA+TGG 0.456822 1_1:+34105335 Msa0019580:intron
TTATGGAAGGAAATGATTGC+AGG 0.457763 1_1:+34103857 Msa0019580:CDS
ATAAAAGATGTTAAGATGTT+GGG 0.458475 1_1:+34103650 Msa0019580:CDS
AAATCTCAATCTCATGGAAT+GGG 0.463289 1_1:+34104506 Msa0019580:CDS
CAAGTATATTGATGACTACT+TGG 0.468006 1_1:+34102950 Msa0019580:CDS
AGGAGGAAGGGAGGTGTCAA+TGG 0.471796 1_1:-34101599 None:intergenic
AAAATCTCAATCTCATGGAA+TGG 0.472161 1_1:+34104505 Msa0019580:CDS
GATAAAGTGAAGAATGTGAA+TGG 0.472243 1_1:+34103386 Msa0019580:CDS
ATAAAGTGAAGAATGTGAAT+GGG 0.472454 1_1:+34103387 Msa0019580:CDS
GCACTGTGTCTGGGACATAC+AGG 0.473838 1_1:-34104564 None:intergenic
TTCTCATCTACGAATTTAGC+CGG 0.474652 1_1:+34104146 Msa0019580:CDS
TCCAATATGAAGATAGCCAC+TGG 0.476082 1_1:-34103510 None:intergenic
TACTTCCTCACCTGCTGATA+CGG 0.478040 1_1:-34104742 None:intergenic
GCGTGTTGGCAGGGAAGGAA+AGG 0.481059 1_1:-34101528 None:intergenic
TCATGGAATGGGACAAGCTA+TGG 0.483068 1_1:+34104517 Msa0019580:CDS
ATGTCTGCTGCCTGCCATCT+GGG 0.485977 1_1:-34105550 None:intergenic
GGCGGATTCAGGAGGAAGGG+AGG 0.486629 1_1:-34101608 None:intergenic
CCCACATTTCTCTTCTCCAA+CGG 0.489052 1_1:+34101631 Msa0019580:CDS
CGGTGGCGTGTTGGCAGGGA+AGG 0.491112 1_1:-34101533 None:intergenic
TGACACTCCACGTGAACAAA+AGG 0.492498 1_1:+34103769 Msa0019580:CDS
TGCTGAGCGATACAAAGGTC+AGG 0.492981 1_1:+34103565 Msa0019580:CDS
TCAGCCAGTTTCATCAACTC+AGG 0.495331 1_1:-34103713 None:intergenic
GACCAAGATGGGAATGTCAC+AGG 0.497471 1_1:+34104810 Msa0019580:CDS
GGACAGGCAAAATCATAAGT+TGG 0.503923 1_1:-34104016 None:intergenic
GAGTGTAGACCATATTCAAC+CGG 0.504461 1_1:-34104165 None:intergenic
GGGATTGCAAATAACACGAT+TGG 0.508386 1_1:-34105530 None:intergenic
GAAATAGATAAGGACCAAGA+TGG 0.508595 1_1:+34104798 Msa0019580:CDS
ATGCGGACAAATGATTTCTC+AGG 0.508905 1_1:-34104630 None:intergenic
CGCACAATTCCTTGCACTGT+GGG 0.509364 1_1:-34104259 None:intergenic
TTCACTTTATCCTTGACGAC+TGG 0.509750 1_1:-34103374 None:intergenic
CATAGTAAAGGAAATAGATA+AGG 0.510740 1_1:+34104788 Msa0019580:CDS
TTTCAGGTGCTGGAAAGAGA+TGG 0.510988 1_1:+34103198 Msa0019580:intron
AATCAAACTCCATCAATGTC+AGG 0.511094 1_1:-34104920 None:intergenic
GACGCAGAGTCCGTATCAGC+AGG 0.511379 1_1:+34104732 Msa0019580:CDS
TCTGATAACATTAAGGGAGG+AGG 0.512500 1_1:+34103416 Msa0019580:CDS
TATGCACATGTACTCTCATC+AGG 0.512531 1_1:+34102906 Msa0019580:CDS
CTTTATCCTTGACGACTGGC+TGG 0.513178 1_1:-34103370 None:intergenic
TTTGTGCAAGGGTTAAGCAC+AGG 0.513222 1_1:-34105389 None:intergenic
GATCTTCCAGATGCTGAAGT+TGG 0.514176 1_1:+34103458 Msa0019580:CDS
AAAATTAATTAGCCAGGGTA+AGG 0.515011 1_1:+34103736 Msa0019580:CDS
GGCATTTCCCCAATCCATCA+AGG 0.517350 1_1:-34104766 None:intergenic
CGTGTTGGCAGGGAAGGAAA+GGG 0.521653 1_1:-34101527 None:intergenic
CCTTCACGAGCATCAACAAA+TGG 0.521928 1_1:-34104037 None:intergenic
AAGGTATCACTCATGCCCTT+CGG 0.524399 1_1:+34104056 Msa0019580:CDS
TCCACGTGAACAAAAGGAAA+AGG 0.526198 1_1:+34103775 Msa0019580:CDS
AATCGCAGATCTAGCTATCT+GGG 0.526585 1_1:+34103007 Msa0019580:CDS
ATGCAGAAACCATAGTATAG+AGG 0.528118 1_1:+34103823 Msa0019580:CDS
TTCAGGTGCTGGAAAGAGAT+GGG 0.528173 1_1:+34103199 Msa0019580:intron
GGTGTGATGTACCCTTCGTC+CGG 0.530625 1_1:+34105498 Msa0019580:CDS
GTGTTATGTCCGTGGGAAGT+TGG 0.531075 1_1:+34103898 Msa0019580:CDS
ATGTAACGCAGAAGAACAAA+TGG 0.533432 1_1:-34101749 None:intergenic
GGAGAATTTGAAATTATGGA+AGG 0.534607 1_1:+34103844 Msa0019580:CDS
GCGTGGAGAAGTATTGCAGC+TGG 0.537955 1_1:+34105457 Msa0019580:CDS
GGGAATGTCACAGGGTTAAG+TGG 0.540528 1_1:+34104819 Msa0019580:CDS
ATCGTAATGCTCAGTATCAC+AGG 0.540697 1_1:+34104095 Msa0019580:CDS
TTGGGGAAATGCCATAGTAA+AGG 0.541795 1_1:+34104776 Msa0019580:CDS
AAAGAGCAAAGTTGAATCAT+GGG 0.544517 1_1:+34104222 Msa0019580:CDS
TTTGTTCTTCTGCGTTACAT+TGG 0.545230 1_1:+34101752 Msa0019580:CDS
GGCTTGCAGTGTTATGTCCG+TGG 0.546395 1_1:+34103890 Msa0019580:CDS
AAATCCGGCGAGCTTGGATG+CGG 0.549060 1_1:-34101569 None:intergenic
AGGTGAGGAAGTAACCTTGA+TGG 0.551874 1_1:+34104752 Msa0019580:CDS
CCACGATTTCCCACAGTGCA+AGG 0.553811 1_1:+34104250 Msa0019580:CDS
CCTTGCACTGTGGGAAATCG+TGG 0.554087 1_1:-34104250 None:intergenic
AAATAGATAAGGACCAAGAT+GGG 0.555380 1_1:+34104799 Msa0019580:CDS
TATTTGCAATCCCAGATGGC+AGG 0.556570 1_1:+34105540 Msa0019580:CDS
GTGTTATTTGCAATCCCAGA+TGG 0.560737 1_1:+34105536 Msa0019580:CDS
GCAATGACCGCACTGTGTCT+GGG 0.562208 1_1:-34104573 None:intergenic
CAGCCAGTTTCATCAACTCA+GGG 0.564927 1_1:-34103712 None:intergenic
TACCGCTAACGGTGGCGTGT+TGG 0.566261 1_1:-34101542 None:intergenic
CCGTTGGAGAAGAGAAATGT+GGG 0.567490 1_1:-34101631 None:intergenic
ACGAGCATCAACAAATGGAC+AGG 0.568037 1_1:-34104032 None:intergenic
TAAGGGAGGAGGCATGCCTT+CGG 0.569498 1_1:+34103427 Msa0019580:CDS
GCAGATCTAGCTATCTGGGC+AGG 0.571047 1_1:+34103011 Msa0019580:CDS
CTAACGGTGGCGTGTTGGCA+GGG 0.573298 1_1:-34101537 None:intergenic
CTAACTAGTTCATCTAACTC+AGG 0.576697 1_1:-34104897 None:intergenic
TCACAGGATTCAAGAGGACA+TGG 0.578665 1_1:+34104111 Msa0019580:CDS
AGCTTGAGAAAGGAAAGAAT+GGG 0.586130 1_1:+34105336 Msa0019580:intron
GGTTTCGAAGGCCGGACGAA+GGG 0.590280 1_1:-34105509 None:intergenic
GCTTGCAGTGTTATGTCCGT+GGG 0.592046 1_1:+34103891 Msa0019580:CDS
AGAGTCCGTATCAGCAGGTG+AGG 0.595755 1_1:+34104737 Msa0019580:CDS
CACTGTGTCTGGGACATACA+GGG 0.597397 1_1:-34104563 None:intergenic
AATAACACGATTGGTTTCGA+AGG 0.600160 1_1:-34105521 None:intergenic
GTGGTATTCACTTGACCGAA+GGG 0.600221 1_1:-34104071 None:intergenic
AATGATTGCAGGATCAGAGA+GGG 0.601106 1_1:+34103868 Msa0019580:CDS
GAAAGAGATGGGAAAGCTTG+AGG 0.602516 1_1:+34103210 Msa0019580:CDS
TTGTGCAAGGGTTAAGCACA+GGG 0.603914 1_1:-34105388 None:intergenic
CATTTGTCCGCATCATACCT+AGG 0.604356 1_1:+34104640 Msa0019580:CDS
CCCGTTGGAGAAGAGAAATG+TGG 0.604923 1_1:-34101632 None:intergenic
ATCGCCGCATCCAAGCTCGC+CGG 0.606160 1_1:+34101565 Msa0019580:CDS
AAAAGACCAGCCAGTCGTCA+AGG 0.611058 1_1:+34103364 Msa0019580:CDS
CCATTTGTTGATGCTCGTGA+AGG 0.612122 1_1:+34104037 Msa0019580:CDS
TTGGATCCAATTCTATGATG+AGG 0.614189 1_1:-34103980 None:intergenic
TAAAGTGAAGAATGTGAATG+GGG 0.619059 1_1:+34103388 Msa0019580:CDS
GTATTGCAGCTGGAGAGAAA+GGG 0.620537 1_1:+34105467 Msa0019580:CDS
CGTGGTATTCACTTGACCGA+AGG 0.620830 1_1:-34104072 None:intergenic
CCAATATGAAGATAGCCACT+GGG 0.621615 1_1:-34103509 None:intergenic
AACAAAAGGAAAAGGAGACA+AGG 0.625229 1_1:+34103783 Msa0019580:CDS
AATTCAATAATGGCAGAACA+TGG 0.630080 1_1:+34103269 Msa0019580:CDS
TGGTTTCGAAGGCCGGACGA+AGG 0.632020 1_1:-34105510 None:intergenic
GTATTGTTAACCCTCACTGA+TGG 0.633663 1_1:+34104606 Msa0019580:CDS
GATACTGAGCATTACGATCG+TGG 0.634209 1_1:-34104090 None:intergenic
CGTAACAGGTCGAAATTGCG+TGG 0.638158 1_1:+34101725 Msa0019580:intron
ACCAAGATGGGAATGTCACA+GGG 0.639741 1_1:+34104811 Msa0019580:CDS
AAGGAAAAGGAGACAAGGGA+TGG 0.647444 1_1:+34103788 Msa0019580:CDS
CTTGCATATCCAACTTCCCA+CGG 0.647797 1_1:-34103907 None:intergenic
AACGATAATAAACAGGATCA+CGG 0.648773 1_1:-34103946 None:intergenic
CGATTTGCACCTGAACCCAG+TGG 0.648921 1_1:+34103494 Msa0019580:CDS
AATATGCGAAATCTTAAGCG+TGG 0.649648 1_1:+34105440 Msa0019580:CDS
TTTCTCAGGACCATCAGTGA+GGG 0.655675 1_1:-34104616 None:intergenic
GCGCACAATTCCTTGCACTG+TGG 0.656501 1_1:-34104260 None:intergenic
GGAAGATCTATCTCTACCGA+AGG 0.663050 1_1:-34103443 None:intergenic
CAGACACAGTGCGGTCATTG+CGG 0.665880 1_1:+34104575 Msa0019580:CDS
GAAGTAACCTTGATGGATTG+GGG 0.667338 1_1:+34104759 Msa0019580:CDS
GCGGCGATTACCGCTAACGG+TGG 0.670603 1_1:-34101550 None:intergenic
TCAGTATCACAGGATTCAAG+AGG 0.673861 1_1:+34104105 Msa0019580:CDS
GATGCGGCGATTACCGCTAA+CGG 0.676425 1_1:-34101553 None:intergenic
ATTTCTCAGGACCATCAGTG+AGG 0.679162 1_1:-34104617 None:intergenic
ACAAAAGGAAAAGGAGACAA+GGG 0.680867 1_1:+34103784 Msa0019580:CDS
AATATCAAAATCTTGCACGA+TGG 0.684460 1_1:+34103243 Msa0019580:CDS
CACAGGATTCAAGAGGACAT+GGG 0.686727 1_1:+34104112 Msa0019580:CDS
CATCAACATATGCCTTACCC+TGG 0.687143 1_1:-34103748 None:intergenic
AAATGATTGCAGGATCAGAG+AGG 0.689019 1_1:+34103867 Msa0019580:CDS
ATGATTGCAGGATCAGAGAG+GGG 0.699155 1_1:+34103869 Msa0019580:CDS
GTTGGAGAAGAGAAATGTGG+GGG 0.702868 1_1:-34101629 None:intergenic
GTGCAAGGAATTGTGCGCAG+AGG 0.703043 1_1:+34104265 Msa0019580:CDS
CGTTGGAGAAGAGAAATGTG+GGG 0.703973 1_1:-34101630 None:intergenic
TGTATGTCCCAGACACAGTG+CGG 0.743276 1_1:+34104566 Msa0019580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTCTTTTTTTTCTTTAGA+AGG - chr1_1:34103617-34103636 None:intergenic 15.0%
!! TAAAGAAAAAAAAGAATTTG+TGG + chr1_1:34103619-34103638 Msa0019580:CDS 15.0%
!! ATACTTGTTCAAAAATAAAT+TGG - chr1_1:34104312-34104331 None:intergenic 15.0%
!!! TTTCTTCTTTTTTACTTTTT+TGG + chr1_1:34104430-34104449 Msa0019580:intron 15.0%
!!! GTCAATAATTTTTTTATTGA+TGG - chr1_1:34104544-34104563 None:intergenic 15.0%
!! ACAAATTCTTATAACATATA+TGG - chr1_1:34105099-34105118 None:intergenic 15.0%
!!! ATGTTATAAGAATTTGTTAA+CGG + chr1_1:34105102-34105121 Msa0019580:intron 15.0%
!! ATATATCAGAAAATATAACC+TGG - chr1_1:34101829-34101848 None:intergenic 20.0%
!!! ATAATTTTGAGTTTATAGCT+TGG + chr1_1:34102002-34102021 Msa0019580:intron 20.0%
!!! GATTTTTCTGATAACATTAA+GGG + chr1_1:34103410-34103429 Msa0019580:CDS 20.0%
!! ATAAAAGATGTTAAGATGTT+GGG + chr1_1:34103650-34103669 Msa0019580:CDS 20.0%
!! ATAAGAAATACAGTAGAATA+TGG + chr1_1:34104388-34104407 Msa0019580:intron 20.0%
!! TTTGATTCTGTCATTAATAA+AGG + chr1_1:34104981-34105000 Msa0019580:intron 20.0%
!! ATTCTTATAACATATATGGA+AGG - chr1_1:34105095-34105114 None:intergenic 20.0%
!! AGCAAATAAAAACTTAAACA+GGG - chr1_1:34105308-34105327 None:intergenic 20.0%
!! AAGCAAATAAAAACTTAAAC+AGG - chr1_1:34105309-34105328 None:intergenic 20.0%
! AATTTGCAATTATTCGTAAC+AGG + chr1_1:34101711-34101730 Msa0019580:intron 25.0%
!!! ATATTTTGGCCATAGAAATT+AGG - chr1_1:34101794-34101813 None:intergenic 25.0%
!!! GGCTAGTTTGAAAAATATTT+TGG - chr1_1:34101808-34101827 None:intergenic 25.0%
!!! AAATATTTTTCAAACTAGCC+AGG + chr1_1:34101808-34101827 Msa0019580:CDS 25.0%
!! ATAAGTGATGTTGTCTTTTA+AGG + chr1_1:34101890-34101909 Msa0019580:intron 25.0%
! ATAAGTTGTTTAACCAAACA+GGG - chr1_1:34101916-34101935 None:intergenic 25.0%
! AATAAGTTGTTTAACCAAAC+AGG - chr1_1:34101917-34101936 None:intergenic 25.0%
!! TGGTATTTATAGCCTTTTAT+GGG + chr1_1:34102160-34102179 Msa0019580:intron 25.0%
!! AGTCTTTAGGAATATATTGA+CGG + chr1_1:34102347-34102366 Msa0019580:intron 25.0%
! TATTTACTGCTTATTTGGAT+TGG - chr1_1:34102537-34102556 None:intergenic 25.0%
! AGCAATATTTACTGCTTATT+TGG - chr1_1:34102542-34102561 None:intergenic 25.0%
!! ATGATATTTCTGTAGTTCAA+GGG - chr1_1:34102608-34102627 None:intergenic 25.0%
!! TATGATATTTCTGTAGTTCA+AGG - chr1_1:34102609-34102628 None:intergenic 25.0%
! TGATTGTTTGACAATAGTTT+AGG + chr1_1:34102711-34102730 Msa0019580:intron 25.0%
! GATTGTTTGACAATAGTTTA+GGG + chr1_1:34102712-34102731 Msa0019580:intron 25.0%
! TCAAAGAAACAATTGAATGA+AGG - chr1_1:34102860-34102879 None:intergenic 25.0%
! TCAACATATATTGGCAAAAA+AGG + chr1_1:34103314-34103333 Msa0019580:CDS 25.0%
! ATATATTGGCAAAAAAGGAT+CGG + chr1_1:34103319-34103338 Msa0019580:CDS 25.0%
! ATAAAGTGAAGAATGTGAAT+GGG + chr1_1:34103387-34103406 Msa0019580:CDS 25.0%
!! GGATTTTTCTGATAACATTA+AGG + chr1_1:34103409-34103428 Msa0019580:CDS 25.0%
! GATAAAAGATGTTAAGATGT+TGG + chr1_1:34103649-34103668 Msa0019580:CDS 25.0%
!! TAGAGGAGAATTTGAAATTA+TGG + chr1_1:34103840-34103859 Msa0019580:CDS 25.0%
! ATCAAAAAATCTCAATCTCA+TGG + chr1_1:34104500-34104519 Msa0019580:CDS 25.0%
! CTTATCTATTTCCTTTACTA+TGG - chr1_1:34104790-34104809 None:intergenic 25.0%
! CATAGTAAAGGAAATAGATA+AGG + chr1_1:34104788-34104807 Msa0019580:CDS 25.0%
ATTGATAGATCATAGAAACG+AGG - chr1_1:34101691-34101710 None:intergenic 30.0%
ATGATAAACACTTACGTAGT+AGG + chr1_1:34101963-34101982 Msa0019580:intron 30.0%
TGATAAACACTTACGTAGTA+GGG + chr1_1:34101964-34101983 Msa0019580:intron 30.0%
! TACTTGCAAAAAGCACAATA+AGG + chr1_1:34102066-34102085 Msa0019580:intron 30.0%
AAAGCACAATAAGGAATACT+AGG + chr1_1:34102075-34102094 Msa0019580:intron 30.0%
AAGCACAATAAGGAATACTA+GGG + chr1_1:34102076-34102095 Msa0019580:intron 30.0%
! GTGGTATTTATAGCCTTTTA+TGG + chr1_1:34102159-34102178 Msa0019580:intron 30.0%
TCCTTGGTTTCTTTCAAAAT+AGG + chr1_1:34102659-34102678 Msa0019580:intron 30.0%
!! TCCTATTTTGAAAGAAACCA+AGG - chr1_1:34102663-34102682 None:intergenic 30.0%
AATAGGAGAGTGATAGTTTA+AGG + chr1_1:34102676-34102695 Msa0019580:intron 30.0%
GTCAAACAATCAGTCAATTT+GGG - chr1_1:34102703-34102722 None:intergenic 30.0%
TGTCAAACAATCAGTCAATT+TGG - chr1_1:34102704-34102723 None:intergenic 30.0%
TTGTTTAGGGATCAAATTGA+AGG + chr1_1:34102785-34102804 Msa0019580:intron 30.0%
! CAAGTATATTGATGACTACT+TGG + chr1_1:34102950-34102969 Msa0019580:CDS 30.0%
TTTAGTAGTAGTAGTATCAC+AGG - chr1_1:34103085-34103104 None:intergenic 30.0%
AGAGAAAGAATCACTAAACA+AGG - chr1_1:34103122-34103141 None:intergenic 30.0%
CCATCAAGTTTCATAGATTA+AGG - chr1_1:34103149-34103168 None:intergenic 30.0%
CCTTAATCTATGAAACTTGA+TGG + chr1_1:34103146-34103165 Msa0019580:intron 30.0%
AATATCAAAATCTTGCACGA+TGG + chr1_1:34103243-34103262 Msa0019580:CDS 30.0%
ACGATGGTACAATTCAATAA+TGG + chr1_1:34103259-34103278 Msa0019580:CDS 30.0%
AATTCAATAATGGCAGAACA+TGG + chr1_1:34103269-34103288 Msa0019580:CDS 30.0%
GAAGTCACATCAACATATAT+TGG + chr1_1:34103305-34103324 Msa0019580:CDS 30.0%
TATATTGGCAAAAAAGGATC+GGG + chr1_1:34103320-34103339 Msa0019580:CDS 30.0%
GATAAAGTGAAGAATGTGAA+TGG + chr1_1:34103386-34103405 Msa0019580:CDS 30.0%
TAAAGTGAAGAATGTGAATG+GGG + chr1_1:34103388-34103407 Msa0019580:CDS 30.0%
! TTTTCTGATAACATTAAGGG+AGG + chr1_1:34103413-34103432 Msa0019580:CDS 30.0%
GCTGAAAAATTAATTAGCCA+GGG + chr1_1:34103731-34103750 Msa0019580:CDS 30.0%
AAAATTAATTAGCCAGGGTA+AGG + chr1_1:34103736-34103755 Msa0019580:CDS 30.0%
TCAAATTCTCCTCTATACTA+TGG - chr1_1:34103835-34103854 None:intergenic 30.0%
! GGAGAATTTGAAATTATGGA+AGG + chr1_1:34103844-34103863 Msa0019580:CDS 30.0%
AACGATAATAAACAGGATCA+CGG - chr1_1:34103949-34103968 None:intergenic 30.0%
GATTTGCAACGATAATAAAC+AGG - chr1_1:34103956-34103975 None:intergenic 30.0%
AGTTGGATACACTTTATACT+TGG - chr1_1:34104002-34104021 None:intergenic 30.0%
AAAAGAGCAAAGTTGAATCA+TGG + chr1_1:34104221-34104240 Msa0019580:CDS 30.0%
AAAGAGCAAAGTTGAATCAT+GGG + chr1_1:34104222-34104241 Msa0019580:CDS 30.0%
! AGTGATCAACATTTTAAGCA+TGG - chr1_1:34104463-34104482 None:intergenic 30.0%
AAAATCTCAATCTCATGGAA+TGG + chr1_1:34104505-34104524 Msa0019580:CDS 30.0%
AAATCTCAATCTCATGGAAT+GGG + chr1_1:34104506-34104525 Msa0019580:CDS 30.0%
AAGCTACCACATATACAAAA+AGG + chr1_1:34104691-34104710 Msa0019580:CDS 30.0%
! CCATATCCTTTTTGTATATG+TGG - chr1_1:34104700-34104719 None:intergenic 30.0%
CCACATATACAAAAAGGATA+TGG + chr1_1:34104697-34104716 Msa0019580:CDS 30.0%
AAATAGATAAGGACCAAGAT+GGG + chr1_1:34104799-34104818 Msa0019580:CDS 30.0%
TTACCTCATTACGAAGAAAA+AGG + chr1_1:34104941-34104960 Msa0019580:CDS 30.0%
! ATACCTTTTTCTTCGTAATG+AGG - chr1_1:34104947-34104966 None:intergenic 30.0%
ATATATGGAAGGTTCATGAA+AGG - chr1_1:34105084-34105103 None:intergenic 30.0%
TATAAAACTAGTTCCATGGA+AGG - chr1_1:34105150-34105169 None:intergenic 30.0%
GGACAATAATAAGGACAATA+TGG - chr1_1:34105176-34105195 None:intergenic 30.0%
!! GTATGCACTTTTAAGAGAAT+GGG - chr1_1:34105207-34105226 None:intergenic 30.0%
AAAAAGGAGATTCTAGCATA+TGG + chr1_1:34105410-34105429 Msa0019580:CDS 30.0%
GTCAATGGATGAAGAAAATC+CGG - chr1_1:34101587-34101606 None:intergenic 35.0%
GATCATAGAAACGAGGAAAA+GGG - chr1_1:34101684-34101703 None:intergenic 35.0%
AGATCATAGAAACGAGGAAA+AGG - chr1_1:34101685-34101704 None:intergenic 35.0%
ATGTAACGCAGAAGAACAAA+TGG - chr1_1:34101752-34101771 None:intergenic 35.0%
TTTGTTCTTCTGCGTTACAT+TGG + chr1_1:34101752-34101771 Msa0019580:CDS 35.0%
GCAACTCTTCCTAATTTCTA+TGG + chr1_1:34101782-34101801 Msa0019580:CDS 35.0%
AGGGTTTAGTATCGTATTCT+AGG + chr1_1:34102095-34102114 Msa0019580:intron 35.0%
GGGTTTAGTATCGTATTCTA+GGG + chr1_1:34102096-34102115 Msa0019580:intron 35.0%
CTAGGGTTTAGACTGATTAT+TGG + chr1_1:34102113-34102132 Msa0019580:intron 35.0%
! TTTATAGCCTTTTATGGGTC+TGG + chr1_1:34102165-34102184 Msa0019580:intron 35.0%
TTACTTAGGCAGCAAGTAAT+AGG + chr1_1:34102195-34102214 Msa0019580:intron 35.0%
TACTTAGGCAGCAAGTAATA+GGG + chr1_1:34102196-34102215 Msa0019580:intron 35.0%
ATCGAGAATAGTTTCAAGAC+TGG - chr1_1:34102633-34102652 None:intergenic 35.0%
TATTCTCGATAGTTAGTCCT+TGG + chr1_1:34102643-34102662 Msa0019580:intron 35.0%
!! TGTTAGTTGTTGTTTGCTTC+TGG + chr1_1:34102825-34102844 Msa0019580:intron 35.0%
! TGCATCCATTTTCAAAAGCA+GGG - chr1_1:34102932-34102951 None:intergenic 35.0%
! TTGCATCCATTTTCAAAAGC+AGG - chr1_1:34102933-34102952 None:intergenic 35.0%
!!! GAGAAGCGTACATTTTTAGT+TGG + chr1_1:34102972-34102991 Msa0019580:CDS 35.0%
AGGTGAAGATGAATAGGTAT+AGG - chr1_1:34103065-34103084 None:intergenic 35.0%
TATCACAGGTGAAGATGAAT+AGG - chr1_1:34103071-34103090 None:intergenic 35.0%
! TATTTTGCTGAGCGATACAA+AGG + chr1_1:34103560-34103579 Msa0019580:CDS 35.0%
GGCTGAAAAATTAATTAGCC+AGG + chr1_1:34103730-34103749 Msa0019580:CDS 35.0%
AACAAAAGGAAAAGGAGACA+AGG + chr1_1:34103783-34103802 Msa0019580:CDS 35.0%
ACAAAAGGAAAAGGAGACAA+GGG + chr1_1:34103784-34103803 Msa0019580:CDS 35.0%
ATGCAGAAACCATAGTATAG+AGG + chr1_1:34103823-34103842 Msa0019580:CDS 35.0%
TTATGGAAGGAAATGATTGC+AGG + chr1_1:34103857-34103876 Msa0019580:CDS 35.0%
TCAATGCCTCATCATAGAAT+TGG + chr1_1:34103974-34103993 Msa0019580:CDS 35.0%
TTGGATCCAATTCTATGATG+AGG - chr1_1:34103983-34104002 None:intergenic 35.0%
TTCTCATCTACGAATTTAGC+CGG + chr1_1:34104146-34104165 Msa0019580:CDS 35.0%
TTGATCACTGTTGTTGTACA+GGG + chr1_1:34104474-34104493 Msa0019580:intron 35.0%
ACAAAAACTATGAAGCTGCT+GGG + chr1_1:34104664-34104683 Msa0019580:CDS 35.0%
GAAATAGATAAGGACCAAGA+TGG + chr1_1:34104798-34104817 Msa0019580:CDS 35.0%
CTAACTAGTTCATCTAACTC+AGG - chr1_1:34104900-34104919 None:intergenic 35.0%
AATCAAACTCCATCAATGTC+AGG - chr1_1:34104923-34104942 None:intergenic 35.0%
TTGTGTCAGTAGAAATCGTA+TGG - chr1_1:34105050-34105069 None:intergenic 35.0%
GTTCATGAAAGGTTCATGAT+TGG - chr1_1:34105073-34105092 None:intergenic 35.0%
GTGCTATAAAACTAGTTCCA+TGG - chr1_1:34105154-34105173 None:intergenic 35.0%
GATCAGGATGGACAATAATA+AGG - chr1_1:34105185-34105204 None:intergenic 35.0%
!! ACTTTTAAGAGAATGGGATC+AGG - chr1_1:34105201-34105220 None:intergenic 35.0%
!! GGTATGCACTTTTAAGAGAA+TGG - chr1_1:34105208-34105227 None:intergenic 35.0%
AACCAAAGTGTGTATGCATA+GGG - chr1_1:34105229-34105248 None:intergenic 35.0%
AGCTTGAGAAAGGAAAGAAT+GGG + chr1_1:34105336-34105355 Msa0019580:intron 35.0%
!!! GAATCTCCTTTTTTGTGCAA+GGG - chr1_1:34105403-34105422 None:intergenic 35.0%
!!! AGAATCTCCTTTTTTGTGCA+AGG - chr1_1:34105404-34105423 None:intergenic 35.0%
ACGCTTAAGATTTCGCATAT+TGG - chr1_1:34105441-34105460 None:intergenic 35.0%
AATATGCGAAATCTTAAGCG+TGG + chr1_1:34105440-34105459 Msa0019580:CDS 35.0%
!! AATAACACGATTGGTTTCGA+AGG - chr1_1:34105524-34105543 None:intergenic 35.0%
GGGTGAAGAGATATGAGAAA+GGG - chr1_1:34101664-34101683 None:intergenic 40.0%
AGGGTGAAGAGATATGAGAA+AGG - chr1_1:34101665-34101684 None:intergenic 40.0%
!!! TTGTCTTTTAAGGCCCTGTT+TGG + chr1_1:34101900-34101919 Msa0019580:intron 40.0%
AGGCTATAAATACCACCCTT+GGG - chr1_1:34102155-34102174 None:intergenic 40.0%
AAGGCTATAAATACCACCCT+TGG - chr1_1:34102156-34102175 None:intergenic 40.0%
ACTTAGGCAGCAAGTAATAG+GGG + chr1_1:34102197-34102216 Msa0019580:intron 40.0%
!!! AGCAAGTAATAGGGGTGTTT+TGG + chr1_1:34102205-34102224 Msa0019580:intron 40.0%
!!! GCAAGTAATAGGGGTGTTTT+GGG + chr1_1:34102206-34102225 Msa0019580:intron 40.0%
!!! TAGGGGTGTTTTGGGTATTT+AGG + chr1_1:34102214-34102233 Msa0019580:intron 40.0%
!!! AGGGGTGTTTTGGGTATTTA+GGG + chr1_1:34102215-34102234 Msa0019580:intron 40.0%
CAAGTTCTTCCAAACAGTCT+CGG + chr1_1:34102479-34102498 Msa0019580:intron 40.0%
! ATACGTTTTCCGAGACTGTT+TGG - chr1_1:34102491-34102510 None:intergenic 40.0%
CTTGAGTGAACCTTCAGTTT+GGG + chr1_1:34102560-34102579 Msa0019580:intron 40.0%
TAGTTCAGAGACAAAGTTCG+AGG + chr1_1:34102754-34102773 Msa0019580:intron 40.0%
AGTTCAGAGACAAAGTTCGA+GGG + chr1_1:34102755-34102774 Msa0019580:intron 40.0%
TATGCACATGTACTCTCATC+AGG + chr1_1:34102906-34102925 Msa0019580:CDS 40.0%
AATCGCAGATCTAGCTATCT+GGG + chr1_1:34103007-34103026 Msa0019580:CDS 40.0%
! GATCTACACTATGCCTTTTC+AGG + chr1_1:34103182-34103201 Msa0019580:intron 40.0%
TTCACTTTATCCTTGACGAC+TGG - chr1_1:34103377-34103396 None:intergenic 40.0%
TCTGATAACATTAAGGGAGG+AGG + chr1_1:34103416-34103435 Msa0019580:CDS 40.0%
! ACTTTTCCAACTTCAGCATC+TGG - chr1_1:34103467-34103486 None:intergenic 40.0%
CCAATATGAAGATAGCCACT+GGG - chr1_1:34103512-34103531 None:intergenic 40.0%
TCCAATATGAAGATAGCCAC+TGG - chr1_1:34103513-34103532 None:intergenic 40.0%
TCCACGTGAACAAAAGGAAA+AGG + chr1_1:34103775-34103794 Msa0019580:CDS 40.0%
! TCCTTTTCCTTTTGTTCACG+TGG - chr1_1:34103779-34103798 None:intergenic 40.0%
AAATGATTGCAGGATCAGAG+AGG + chr1_1:34103867-34103886 Msa0019580:CDS 40.0%
AATGATTGCAGGATCAGAGA+GGG + chr1_1:34103868-34103887 Msa0019580:CDS 40.0%
GGACAGGCAAAATCATAAGT+TGG - chr1_1:34104019-34104038 None:intergenic 40.0%
ATCGTAATGCTCAGTATCAC+AGG + chr1_1:34104095-34104114 Msa0019580:CDS 40.0%
TCAGTATCACAGGATTCAAG+AGG + chr1_1:34104105-34104124 Msa0019580:CDS 40.0%
CGAATTTAGCCGGTTGAATA+TGG + chr1_1:34104156-34104175 Msa0019580:CDS 40.0%
GAGTGTAGACCATATTCAAC+CGG - chr1_1:34104168-34104187 None:intergenic 40.0%
TCAGCAAACGAAAGCTTCTA+TGG + chr1_1:34104191-34104210 Msa0019580:CDS 40.0%
GTTGATCACTGTTGTTGTAC+AGG + chr1_1:34104473-34104492 Msa0019580:intron 40.0%
TGATCACTGTTGTTGTACAG+GGG + chr1_1:34104475-34104494 Msa0019580:intron 40.0%
GTATTGTTAACCCTCACTGA+TGG + chr1_1:34104606-34104625 Msa0019580:CDS 40.0%
ATGCGGACAAATGATTTCTC+AGG - chr1_1:34104633-34104652 None:intergenic 40.0%
! TTTTGTGCCTAGGTATGATG+CGG - chr1_1:34104650-34104669 None:intergenic 40.0%
! GCTTCATAGTTTTTGTGCCT+AGG - chr1_1:34104660-34104679 None:intergenic 40.0%
CACAAAAACTATGAAGCTGC+TGG + chr1_1:34104663-34104682 Msa0019580:CDS 40.0%
! AGGAAGTAACCTTGATGGAT+TGG + chr1_1:34104757-34104776 Msa0019580:CDS 40.0%
!! GGAAGTAACCTTGATGGATT+GGG + chr1_1:34104758-34104777 Msa0019580:CDS 40.0%
!! GAAGTAACCTTGATGGATTG+GGG + chr1_1:34104759-34104778 Msa0019580:CDS 40.0%
TTGGGGAAATGCCATAGTAA+AGG + chr1_1:34104776-34104795 Msa0019580:CDS 40.0%
! AGTGGTGTTTTACATCCTGA+AGG + chr1_1:34104837-34104856 Msa0019580:CDS 40.0%
! ACTAGTTAGCCTGACATTGA+TGG + chr1_1:34104911-34104930 Msa0019580:CDS 40.0%
! CGAAGAAAAAGGTATGTGCT+TGG + chr1_1:34104952-34104971 Msa0019580:intron 40.0%
TTCCATGGAAGGTTCATGAA+AGG - chr1_1:34105139-34105158 None:intergenic 40.0%
TTAAGAGAATGGGATCAGGA+TGG - chr1_1:34105197-34105216 None:intergenic 40.0%
TACCCTATGCATACACACTT+TGG + chr1_1:34105224-34105243 Msa0019580:intron 40.0%
GAACCAAAGTGTGTATGCAT+AGG - chr1_1:34105230-34105249 None:intergenic 40.0%
ACTTAAACAGGGAAGAAAGC+AGG - chr1_1:34105297-34105316 None:intergenic 40.0%
! CTTTGTTTGCAGCTTGAGAA+AGG + chr1_1:34105326-34105345 Msa0019580:intron 40.0%
CAGCTTGAGAAAGGAAAGAA+TGG + chr1_1:34105335-34105354 Msa0019580:intron 40.0%
GCTTAACCCTTGCACAAAAA+AGG + chr1_1:34105394-34105413 Msa0019580:CDS 40.0%
TGGAGAGAAAGGGATATTTC+AGG + chr1_1:34105477-34105496 Msa0019580:CDS 40.0%
GGGATTGCAAATAACACGAT+TGG - chr1_1:34105533-34105552 None:intergenic 40.0%
!! GTGTTATTTGCAATCCCAGA+TGG + chr1_1:34105536-34105555 Msa0019580:CDS 40.0%
GTTGGAGAAGAGAAATGTGG+GGG - chr1_1:34101632-34101651 None:intergenic 45.0%
CGTTGGAGAAGAGAAATGTG+GGG - chr1_1:34101633-34101652 None:intergenic 45.0%
CCGTTGGAGAAGAGAAATGT+GGG - chr1_1:34101634-34101653 None:intergenic 45.0%
CCCACATTTCTCTTCTCCAA+CGG + chr1_1:34101631-34101650 Msa0019580:CDS 45.0%
CCACATTTCTCTTCTCCAAC+GGG + chr1_1:34101632-34101651 Msa0019580:CDS 45.0%
CTTACGTAGTAGGGTCTGTT+TGG + chr1_1:34101973-34101992 Msa0019580:intron 45.0%
CCACAAACCAGACCCATAAA+AGG - chr1_1:34102175-34102194 None:intergenic 45.0%
!! CCTTTTATGGGTCTGGTTTG+TGG + chr1_1:34102172-34102191 Msa0019580:intron 45.0%
! GGTCTGGTTTGTGGTTACTT+AGG + chr1_1:34102181-34102200 Msa0019580:intron 45.0%
!! GGGGTGTTTTGGGTATTTAG+GGG + chr1_1:34102216-34102235 Msa0019580:intron 45.0%
! AGGCTTCTAGAAGCGAACAA+AGG + chr1_1:34102250-34102269 Msa0019580:intron 45.0%
! CTTCTAGAAGCGAACAAAGG+CGG + chr1_1:34102253-34102272 Msa0019580:intron 45.0%
AAACGCGTCTTTGAGCCTTA+TGG + chr1_1:34102287-34102306 Msa0019580:intron 45.0%
GCTTGAGTGAACCTTCAGTT+TGG + chr1_1:34102559-34102578 Msa0019580:intron 45.0%
GTCCCACTTTCTCTCCTATT+GGG + chr1_1:34102582-34102601 Msa0019580:intron 45.0%
TCGAGGGTGAGTGATTGTTT+AGG + chr1_1:34102771-34102790 Msa0019580:intron 45.0%
CGAGGGTGAGTGATTGTTTA+GGG + chr1_1:34102772-34102791 Msa0019580:intron 45.0%
!! TCAGGCCCTGCTTTTGAAAA+TGG + chr1_1:34102924-34102943 Msa0019580:CDS 45.0%
CAATCGCAGATCTAGCTATC+TGG + chr1_1:34103006-34103025 Msa0019580:CDS 45.0%
TCTCTTTCCAGCACCTGAAA+AGG - chr1_1:34103198-34103217 None:intergenic 45.0%
!! TTTCAGGTGCTGGAAAGAGA+TGG + chr1_1:34103198-34103217 Msa0019580:intron 45.0%
!! TTCAGGTGCTGGAAAGAGAT+GGG + chr1_1:34103199-34103218 Msa0019580:intron 45.0%
GAAAGAGATGGGAAAGCTTG+AGG + chr1_1:34103210-34103229 Msa0019580:CDS 45.0%
GGAAGATCTATCTCTACCGA+AGG - chr1_1:34103446-34103465 None:intergenic 45.0%
GATCTTCCAGATGCTGAAGT+TGG + chr1_1:34103458-34103477 Msa0019580:CDS 45.0%
CCCAGTGGCTATCTTCATAT+TGG + chr1_1:34103509-34103528 Msa0019580:CDS 45.0%
!! CTTCCCTGAGTTGATGAAAC+TGG + chr1_1:34103709-34103728 Msa0019580:CDS 45.0%
CAGCCAGTTTCATCAACTCA+GGG - chr1_1:34103715-34103734 None:intergenic 45.0%
TCAGCCAGTTTCATCAACTC+AGG - chr1_1:34103716-34103735 None:intergenic 45.0%
CATCAACATATGCCTTACCC+TGG - chr1_1:34103751-34103770 None:intergenic 45.0%
TGACACTCCACGTGAACAAA+AGG + chr1_1:34103769-34103788 Msa0019580:CDS 45.0%
AAGGAAAAGGAGACAAGGGA+TGG + chr1_1:34103788-34103807 Msa0019580:CDS 45.0%
ATGATTGCAGGATCAGAGAG+GGG + chr1_1:34103869-34103888 Msa0019580:CDS 45.0%
CTTGCATATCCAACTTCCCA+CGG - chr1_1:34103910-34103929 None:intergenic 45.0%
!! GGATCACGGAGTGATTTGTT+TGG - chr1_1:34103935-34103954 None:intergenic 45.0%
ACGAGCATCAACAAATGGAC+AGG - chr1_1:34104035-34104054 None:intergenic 45.0%
CCTTCACGAGCATCAACAAA+TGG - chr1_1:34104040-34104059 None:intergenic 45.0%
! CCATTTGTTGATGCTCGTGA+AGG + chr1_1:34104037-34104056 Msa0019580:CDS 45.0%
! AAGGTATCACTCATGCCCTT+CGG + chr1_1:34104056-34104075 Msa0019580:CDS 45.0%
GTGGTATTCACTTGACCGAA+GGG - chr1_1:34104074-34104093 None:intergenic 45.0%
GATACTGAGCATTACGATCG+TGG - chr1_1:34104093-34104112 None:intergenic 45.0%
TCACAGGATTCAAGAGGACA+TGG + chr1_1:34104111-34104130 Msa0019580:CDS 45.0%
CACAGGATTCAAGAGGACAT+GGG + chr1_1:34104112-34104131 Msa0019580:CDS 45.0%
GATCACTGTTGTTGTACAGG+GGG + chr1_1:34104476-34104495 Msa0019580:intron 45.0%
TCATGGAATGGGACAAGCTA+TGG + chr1_1:34104517-34104536 Msa0019580:CDS 45.0%
TTTCTCAGGACCATCAGTGA+GGG - chr1_1:34104619-34104638 None:intergenic 45.0%
ATTTCTCAGGACCATCAGTG+AGG - chr1_1:34104620-34104639 None:intergenic 45.0%
CATTTGTCCGCATCATACCT+AGG + chr1_1:34104640-34104659 Msa0019580:CDS 45.0%
TACTTCCTCACCTGCTGATA+CGG - chr1_1:34104745-34104764 None:intergenic 45.0%
AGGTGAGGAAGTAACCTTGA+TGG + chr1_1:34104752-34104771 Msa0019580:CDS 45.0%
ACCAAGATGGGAATGTCACA+GGG + chr1_1:34104811-34104830 Msa0019580:CDS 45.0%
! CCAAGTGAGCTTCAGTTTTG+TGG - chr1_1:34104874-34104893 None:intergenic 45.0%
CCACAAAACTGAAGCTCACT+TGG + chr1_1:34104871-34104890 Msa0019580:CDS 45.0%
GACCTTTCATGAACCTTCCA+TGG + chr1_1:34105134-34105153 Msa0019580:intron 45.0%
TTGTGCAAGGGTTAAGCACA+GGG - chr1_1:34105391-34105410 None:intergenic 45.0%
TTTGTGCAAGGGTTAAGCAC+AGG - chr1_1:34105392-34105411 None:intergenic 45.0%
AGTATTGCAGCTGGAGAGAA+AGG + chr1_1:34105466-34105485 Msa0019580:CDS 45.0%
GTATTGCAGCTGGAGAGAAA+GGG + chr1_1:34105467-34105486 Msa0019580:CDS 45.0%
TATTTGCAATCCCAGATGGC+AGG + chr1_1:34105540-34105559 Msa0019580:CDS 45.0%
TGAAGAAAATCCGGCGAGCT+TGG - chr1_1:34101578-34101597 None:intergenic 50.0%
CCCGTTGGAGAAGAGAAATG+TGG - chr1_1:34101635-34101654 None:intergenic 50.0%
CGTAACAGGTCGAAATTGCG+TGG + chr1_1:34101725-34101744 Msa0019580:intron 50.0%
ATGCCTTGAGATCACTCCCA+AGG + chr1_1:34102136-34102155 Msa0019580:intron 50.0%
TGCCTTGAGATCACTCCCAA+GGG + chr1_1:34102137-34102156 Msa0019580:intron 50.0%
!! GGTATTTAGGGGCGTTCTAG+AGG + chr1_1:34102227-34102246 Msa0019580:intron 50.0%
!! ATTTAGGGGCGTTCTAGAGG+AGG + chr1_1:34102230-34102249 Msa0019580:intron 50.0%
GAACAAAGGCGGTGTCCTAA+CGG + chr1_1:34102264-34102283 Msa0019580:intron 50.0%
CTCAAAGACGCGTTTCCGTT+AGG - chr1_1:34102282-34102301 None:intergenic 50.0%
! TTTGAGCCTTATGGCCCTTC+TGG + chr1_1:34102296-34102315 Msa0019580:intron 50.0%
! CTGGGAGGGTCTTAGTCTTT+AGG + chr1_1:34102334-34102353 Msa0019580:intron 50.0%
GAAAGTGGGACCCAAACTGA+AGG - chr1_1:34102573-34102592 None:intergenic 50.0%
GGTCCCACTTTCTCTCCTAT+TGG + chr1_1:34102581-34102600 Msa0019580:intron 50.0%
GGCCCAATAGGAGAGAAAGT+GGG - chr1_1:34102587-34102606 None:intergenic 50.0%
CTGTAGTTCAAGGGCCCAAT+AGG - chr1_1:34102599-34102618 None:intergenic 50.0%
!!! CACTATGCCTTTTCAGGTGC+TGG + chr1_1:34103188-34103207 Msa0019580:intron 50.0%
!!! TCTTTTGGCTTGGCTGCAGA+TGG - chr1_1:34103350-34103369 None:intergenic 50.0%
!!! TTGACGACTGGCTGGTCTTT+TGG - chr1_1:34103365-34103384 None:intergenic 50.0%
AAAAGACCAGCCAGTCGTCA+AGG + chr1_1:34103364-34103383 Msa0019580:CDS 50.0%
CTTTATCCTTGACGACTGGC+TGG - chr1_1:34103373-34103392 None:intergenic 50.0%
TGAAGATAGCCACTGGGTTC+AGG - chr1_1:34103506-34103525 None:intergenic 50.0%
TGCTGAGCGATACAAAGGTC+AGG + chr1_1:34103565-34103584 Msa0019580:CDS 50.0%
GCTTGCAGTGTTATGTCCGT+GGG + chr1_1:34103891-34103910 Msa0019580:CDS 50.0%
GTGTTATGTCCGTGGGAAGT+TGG + chr1_1:34103898-34103917 Msa0019580:CDS 50.0%
CGTGGTATTCACTTGACCGA+AGG - chr1_1:34104075-34104094 None:intergenic 50.0%
CGCACAATTCCTTGCACTGT+GGG - chr1_1:34104262-34104281 None:intergenic 50.0%
! CACTGTGTCTGGGACATACA+GGG - chr1_1:34104566-34104585 None:intergenic 50.0%
TGTATGTCCCAGACACAGTG+CGG + chr1_1:34104566-34104585 Msa0019580:CDS 50.0%
GGCATTTCCCCAATCCATCA+AGG - chr1_1:34104769-34104788 None:intergenic 50.0%
GACCAAGATGGGAATGTCAC+AGG + chr1_1:34104810-34104829 Msa0019580:CDS 50.0%
ACCCTGTGACATTCCCATCT+TGG - chr1_1:34104815-34104834 None:intergenic 50.0%
GGGAATGTCACAGGGTTAAG+TGG + chr1_1:34104819-34104838 Msa0019580:CDS 50.0%
GTGGTCTTCACAGATCCTTC+AGG - chr1_1:34104855-34104874 None:intergenic 50.0%
ATGGACACGTGAATTGCTCG+TGG - chr1_1:34105031-34105050 None:intergenic 50.0%
!! ACACGATTGGTTTCGAAGGC+CGG - chr1_1:34105520-34105539 None:intergenic 50.0%
! CGTGTTGGCAGGGAAGGAAA+GGG - chr1_1:34101530-34101549 None:intergenic 55.0%
GATGCGGCGATTACCGCTAA+CGG - chr1_1:34101556-34101575 None:intergenic 55.0%
AAATCCGGCGAGCTTGGATG+CGG - chr1_1:34101572-34101591 None:intergenic 55.0%
!! AGGAGGAAGGGAGGTGTCAA+TGG - chr1_1:34101602-34101621 None:intergenic 55.0%
! AGAAATGTGGGGGCGGATTC+AGG - chr1_1:34101622-34101641 None:intergenic 55.0%
GGAGAAGAGAAATGTGGGGG+CGG - chr1_1:34101629-34101648 None:intergenic 55.0%
GAGAAAGGGAACGTACCCGT+TGG - chr1_1:34101650-34101669 None:intergenic 55.0%
CACCCTTGGGAGTGATCTCA+AGG - chr1_1:34102142-34102161 None:intergenic 55.0%
CTTGAGATCACTCCCAAGGG+TGG + chr1_1:34102140-34102159 Msa0019580:intron 55.0%
GGGCCCAATAGGAGAGAAAG+TGG - chr1_1:34102588-34102607 None:intergenic 55.0%
GCAGATCTAGCTATCTGGGC+AGG + chr1_1:34103011-34103030 Msa0019580:CDS 55.0%
!!! GACTGGCTGGTCTTTTGGCT+TGG - chr1_1:34103360-34103379 None:intergenic 55.0%
! TAAGGGAGGAGGCATGCCTT+CGG + chr1_1:34103427-34103446 Msa0019580:CDS 55.0%
CGATTTGCACCTGAACCCAG+TGG + chr1_1:34103494-34103513 Msa0019580:CDS 55.0%
GGCTTGCAGTGTTATGTCCG+TGG + chr1_1:34103890-34103909 Msa0019580:CDS 55.0%
CCTTGCACTGTGGGAAATCG+TGG - chr1_1:34104253-34104272 None:intergenic 55.0%
CCACGATTTCCCACAGTGCA+AGG + chr1_1:34104250-34104269 Msa0019580:CDS 55.0%
GCGCACAATTCCTTGCACTG+TGG - chr1_1:34104263-34104282 None:intergenic 55.0%
GTGCAAGGAATTGTGCGCAG+AGG + chr1_1:34104265-34104284 Msa0019580:CDS 55.0%
! GCACTGTGTCTGGGACATAC+AGG - chr1_1:34104567-34104586 None:intergenic 55.0%
GCAATGACCGCACTGTGTCT+GGG - chr1_1:34104576-34104595 None:intergenic 55.0%
CAGACACAGTGCGGTCATTG+CGG + chr1_1:34104575-34104594 Msa0019580:CDS 55.0%
AGAGTCCGTATCAGCAGGTG+AGG + chr1_1:34104737-34104756 Msa0019580:CDS 55.0%
!! GCGTGGAGAAGTATTGCAGC+TGG + chr1_1:34105457-34105476 Msa0019580:CDS 55.0%
GGTGTGATGTACCCTTCGTC+CGG + chr1_1:34105498-34105517 Msa0019580:CDS 55.0%
ATGTCTGCTGCCTGCCATCT+GGG - chr1_1:34105553-34105572 None:intergenic 55.0%
! GCGTGTTGGCAGGGAAGGAA+AGG - chr1_1:34101531-34101550 None:intergenic 60.0%
! CTAACGGTGGCGTGTTGGCA+GGG - chr1_1:34101540-34101559 None:intergenic 60.0%
TGCCAACACGCCACCGTTAG+CGG + chr1_1:34101540-34101559 Msa0019580:CDS 60.0%
TACCGCTAACGGTGGCGTGT+TGG - chr1_1:34101545-34101564 None:intergenic 60.0%
! AATGTGGGGGCGGATTCAGG+AGG - chr1_1:34101619-34101638 None:intergenic 60.0%
! GAGCCTTATGGCCCTTCTGG+AGG + chr1_1:34102299-34102318 Msa0019580:intron 60.0%
CGTCCTCCAGAAGGGCCATA+AGG - chr1_1:34102305-34102324 None:intergenic 60.0%
GACCTCAGCGTCCTCCAGAA+GGG - chr1_1:34102313-34102332 None:intergenic 60.0%
AGACCTCAGCGTCCTCCAGA+AGG - chr1_1:34102314-34102333 None:intergenic 60.0%
TGGAGGACGCTGAGGTCTCT+GGG + chr1_1:34102316-34102335 Msa0019580:intron 60.0%
GCTATCTGGGCAGGTCTTGC+AGG + chr1_1:34103020-34103039 Msa0019580:CDS 60.0%
CGCAATGACCGCACTGTGTC+TGG - chr1_1:34104577-34104596 None:intergenic 60.0%
GACGCAGAGTCCGTATCAGC+AGG + chr1_1:34104732-34104751 Msa0019580:CDS 60.0%
GGTTTCGAAGGCCGGACGAA+GGG - chr1_1:34105512-34105531 None:intergenic 60.0%
TGGTTTCGAAGGCCGGACGA+AGG - chr1_1:34105513-34105532 None:intergenic 60.0%
GATGTCTGCTGCCTGCCATC+TGG - chr1_1:34105554-34105573 None:intergenic 60.0%
! GCTAACGGTGGCGTGTTGGC+AGG - chr1_1:34101541-34101560 None:intergenic 65.0%
GCGGCGATTACCGCTAACGG+TGG - chr1_1:34101553-34101572 None:intergenic 65.0%
ATCGCCGCATCCAAGCTCGC+CGG + chr1_1:34101565-34101584 Msa0019580:CDS 65.0%
! GGCGGATTCAGGAGGAAGGG+AGG - chr1_1:34101611-34101630 None:intergenic 65.0%
! GGGGGCGGATTCAGGAGGAA+GGG - chr1_1:34101614-34101633 None:intergenic 65.0%
! TGGGGGCGGATTCAGGAGGA+AGG - chr1_1:34101615-34101634 None:intergenic 65.0%
CTGGAGGACGCTGAGGTCTC+TGG + chr1_1:34102315-34102334 Msa0019580:intron 65.0%
AGGACGCTGAGGTCTCTGGG+AGG + chr1_1:34102319-34102338 Msa0019580:intron 65.0%
! GGACGCTGAGGTCTCTGGGA+GGG + chr1_1:34102320-34102339 Msa0019580:intron 65.0%
! CGGTGGCGTGTTGGCAGGGA+AGG - chr1_1:34101536-34101555 None:intergenic 70.0%
! GGCCCTTCTGGAGGACGCTG+AGG + chr1_1:34102308-34102327 Msa0019580:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 34101514 34105583 34101514 ID=Msa0019580;Name=Msa0019580
chr1_1 mRNA 34101514 34105583 34101514 ID=Msa0019580-mRNA-1;Parent=Msa0019580;Name=Msa0019580-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.6|0.33|1|1|1|6|0|742
chr1_1 exon 34101514 34101653 34101514 ID=Msa0019580-mRNA-1:exon:10843;Parent=Msa0019580-mRNA-1
chr1_1 exon 34101733 34101829 34101733 ID=Msa0019580-mRNA-1:exon:10844;Parent=Msa0019580-mRNA-1
chr1_1 exon 34102888 34103041 34102888 ID=Msa0019580-mRNA-1:exon:10845;Parent=Msa0019580-mRNA-1
chr1_1 exon 34103204 34104327 34103204 ID=Msa0019580-mRNA-1:exon:10846;Parent=Msa0019580-mRNA-1
chr1_1 exon 34104495 34104962 34104495 ID=Msa0019580-mRNA-1:exon:10847;Parent=Msa0019580-mRNA-1
chr1_1 exon 34105338 34105583 34105338 ID=Msa0019580-mRNA-1:exon:10848;Parent=Msa0019580-mRNA-1
chr1_1 CDS 34101514 34101653 34101514 ID=Msa0019580-mRNA-1:cds;Parent=Msa0019580-mRNA-1
chr1_1 CDS 34101733 34101829 34101733 ID=Msa0019580-mRNA-1:cds;Parent=Msa0019580-mRNA-1
chr1_1 CDS 34102888 34103041 34102888 ID=Msa0019580-mRNA-1:cds;Parent=Msa0019580-mRNA-1
chr1_1 CDS 34103204 34104327 34103204 ID=Msa0019580-mRNA-1:cds;Parent=Msa0019580-mRNA-1
chr1_1 CDS 34104495 34104962 34104495 ID=Msa0019580-mRNA-1:cds;Parent=Msa0019580-mRNA-1
chr1_1 CDS 34105338 34105583 34105338 ID=Msa0019580-mRNA-1:cds;Parent=Msa0019580-mRNA-1
Gene Sequence

>Msa0019580

ATGGATATCAAAACCCTTTCCTTCCCTGCCAACACGCCACCGTTAGCGGTAATCGCCGCATCCAAGCTCGCCGGATTTTCTTCATCCATTGACACCTCCCTTCCTCCTGAATCCGCCCCCACATTTCTCTTCTCCAACGGGTCGAAATTGCGTGGACCATTTGTTCTTCTGCGTTACATTGGAAGAACTGCAACTCTTCCTAATTTCTATGGCCAAAATATTTTTCAAACTAGCCAGATTGATGAATTGCTAGAGTATGCACATGTACTCTCATCAGGCCCTGCTTTTGAAAATGGATGCAAGTATATTGATGACTACTTGGAGAAGCGTACATTTTTAGTTGGTAATACATTATCAATCGCAGATCTAGCTATCTGGGCAGGTCTTGCAGGTGCTGGAAAGAGATGGGAAAGCTTGAGGAAATCAAAGAAATATCAAAATCTTGCACGATGGTACAATTCAATAATGGCAGAACATGGTACTACATTAAATGAAGTCACATCAACATATATTGGCAAAAAAGGATCGGGAGAGCCATCTGCAGCCAAGCCAAAAGACCAGCCAGTCGTCAAGGATAAAGTGAAGAATGTGAATGGGGATTTTTCTGATAACATTAAGGGAGGAGGCATGCCTTCGGTAGAGATAGATCTTCCAGATGCTGAAGTTGGAAAAGTTCGCTTGCGATTTGCACCTGAACCCAGTGGCTATCTTCATATTGGACACGCAAAAGCAGCTCTGTTGAACAAGTATTTTGCTGAGCGATACAAAGGTCAGGTTATTTTGCGTTTTGATGATACAAATCCTTCTAAAGAAAAAAAAGAATTTGTGGACAATTTGATAAAAGATGTTAAGATGTTGGGTGTCAAATATGAAAAAATTACATATACATCAGATTACTTCCCTGAGTTGATGAAACTGGCTGAAAAATTAATTAGCCAGGGTAAGGCATATGTTGATGACACTCCACGTGAACAAAAGGAAAAGGAGACAAGGGATGGCATAGAATCTAAATGCAGAAACCATAGTATAGAGGAGAATTTGAAATTATGGAAGGAAATGATTGCAGGATCAGAGAGGGGCTTGCAGTGTTATGTCCGTGGGAAGTTGGATATGCAAGATCCAAACAAATCACTCCGTGATCCTGTTTATTATCGTTGCAAATCAATGCCTCATCATAGAATTGGATCCAAGTATAAAGTGTATCCAACTTATGATTTTGCCTGTCCATTTGTTGATGCTCGTGAAGGTATCACTCATGCCCTTCGGTCAAGTGAATACCACGATCGTAATGCTCAGTATCACAGGATTCAAGAGGACATGGGAGTTAAAAAAGTTCTCATCTACGAATTTAGCCGGTTGAATATGGTCTACACTCTTCTCAGCAAACGAAAGCTTCTATGGTTTGTTGAAAAGAGCAAAGTTGAATCATGGGATGATCCACGATTTCCCACAGTGCAAGGAATTGTGCGCAGAGGCTTGAAAATTGAAGCGCTAATCCAATTTATTTTTGAACAAGGGGCATCAAAAAATCTCAATCTCATGGAATGGGACAAGCTATGGACCATCAATAAAAAAATTATTGACCCTGTATGTCCCAGACACAGTGCGGTCATTGCGGATAGACGTGTATTGTTAACCCTCACTGATGGTCCTGAGAAATCATTTGTCCGCATCATACCTAGGCACAAAAACTATGAAGCTGCTGGGAATAAAGCTACCACATATACAAAAAGGATATGGATTGACTATGCTGACGCAGAGTCCGTATCAGCAGGTGAGGAAGTAACCTTGATGGATTGGGGAAATGCCATAGTAAAGGAAATAGATAAGGACCAAGATGGGAATGTCACAGGGTTAAGTGGTGTTTTACATCCTGAAGGATCTGTGAAGACCACAAAACTGAAGCTCACTTGGCTACCTGAGTTAGATGAACTAGTTAGCCTGACATTGATGGAGTTTGATTACCTCATTACGAAGAAAAAGCTTGAGAAAGGAAAGAATGGGAAAGAAGAGAATATCGATGATGTGCTTAACCCTGTGCTTAACCCTTGCACAAAAAAGGAGATTCTAGCATATGGAGAATCCAATATGCGAAATCTTAAGCGTGGAGAAGTATTGCAGCTGGAGAGAAAGGGATATTTCAGGTGTGATGTACCCTTCGTCCGGCCTTCGAAACCAATCGTGTTATTTGCAATCCCAGATGGCAGGCAGCAGACATCTTTGAAGTAA

Protein sequence

>Msa0019580

MDIKTLSFPANTPPLAVIAASKLAGFSSSIDTSLPPESAPTFLFSNGSKLRGPFVLLRYIGRTATLPNFYGQNIFQTSQIDELLEYAHVLSSGPAFENGCKYIDDYLEKRTFLVGNTLSIADLAIWAGLAGAGKRWESLRKSKKYQNLARWYNSIMAEHGTTLNEVTSTYIGKKGSGEPSAAKPKDQPVVKDKVKNVNGDFSDNIKGGGMPSVEIDLPDAEVGKVRLRFAPEPSGYLHIGHAKAALLNKYFAERYKGQVILRFDDTNPSKEKKEFVDNLIKDVKMLGVKYEKITYTSDYFPELMKLAEKLISQGKAYVDDTPREQKEKETRDGIESKCRNHSIEENLKLWKEMIAGSERGLQCYVRGKLDMQDPNKSLRDPVYYRCKSMPHHRIGSKYKVYPTYDFACPFVDAREGITHALRSSEYHDRNAQYHRIQEDMGVKKVLIYEFSRLNMVYTLLSKRKLLWFVEKSKVESWDDPRFPTVQGIVRRGLKIEALIQFIFEQGASKNLNLMEWDKLWTINKKIIDPVCPRHSAVIADRRVLLTLTDGPEKSFVRIIPRHKNYEAAGNKATTYTKRIWIDYADAESVSAGEEVTLMDWGNAIVKEIDKDQDGNVTGLSGVLHPEGSVKTTKLKLTWLPELDELVSLTLMEFDYLITKKKLEKGKNGKEENIDDVLNPVLNPCTKKEILAYGESNMRNLKRGEVLQLERKGYFRCDVPFVRPSKPIVLFAIPDGRQQTSLK*