AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1083840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1083840 MtrunA17_Chr7g0273371 96.030 403 6 1 1 403 1 393 0.0 796
Msa1083840 MtrunA17_Chr1g0211241 39.167 120 66 2 120 236 418 533 1.47e-19 90.9
Msa1083840 MtrunA17_Chr7g0255151 35.172 145 66 4 160 303 163 280 8.54e-19 87.8
Msa1083840 MtrunA17_Chr6g0462021 34.722 144 74 2 160 303 150 273 2.53e-18 86.3
Msa1083840 MtrunA17_Chr6g0464751 28.641 206 100 4 124 303 78 262 5.69e-18 85.1
Msa1083840 MtrunA17_Chr4g0064931 41.748 103 47 2 120 210 325 426 5.75e-18 85.9
Msa1083840 MtrunA17_Chr3g0131931 33.333 144 76 2 160 303 151 274 1.10e-17 84.3
Msa1083840 MtrunA17_Chr1g0211231 41.176 102 49 3 120 210 343 444 1.83e-17 84.3
Msa1083840 MtrunA17_Chr4g0049351 35.714 140 77 3 83 209 272 411 3.73e-17 83.2
Msa1083840 MtrunA17_Chr1g0201631 34.028 144 76 2 160 303 136 260 1.15e-16 81.3
Msa1083840 MtrunA17_Chr1g0199411 33.858 127 78 3 120 240 55 181 3.46e-16 78.2
Msa1083840 MtrunA17_Chr7g0251761 33.803 142 74 2 162 303 152 273 2.27e-15 77.4
Msa1083840 MtrunA17_Chr4g0009911 30.323 155 83 4 86 223 23 169 2.39e-15 76.3
Msa1083840 MtrunA17_Chr5g0406311 31.915 141 69 4 162 302 170 283 4.36e-13 70.1
Msa1083840 MtrunA17_Chr7g0255161 44.118 68 29 1 160 218 90 157 7.04e-13 69.3
Msa1083840 MtrunA17_Chr5g0418141 59.091 44 18 0 162 205 181 224 2.14e-12 68.9
Msa1083840 MtrunA17_Chr4g0042821 50.000 54 27 0 162 215 181 234 2.35e-12 68.6
Msa1083840 MtrunA17_Chr1g0193941 37.255 102 49 4 127 217 114 211 2.98e-12 68.2
Msa1083840 MtrunA17_Chr7g0276121 34.066 91 44 2 127 201 76 166 7.81e-12 65.9
Msa1083840 MtrunA17_Chr4g0037991 31.008 129 80 3 162 283 171 297 3.46e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1083840 AT3G04970.1 62.532 395 129 3 1 389 1 382 0.0 515
Msa1083840 AT3G04970.2 73.871 310 81 0 1 310 1 310 3.43e-177 496
Msa1083840 AT3G04970.3 60.000 305 103 3 91 389 4 295 3.85e-133 384
Msa1083840 AT2G14255.1 41.121 107 53 2 123 219 316 422 4.91e-20 92.4
Msa1083840 AT5G50020.3 32.701 211 96 5 117 303 71 259 1.26e-19 90.5
Msa1083840 AT5G50020.2 32.701 211 96 5 117 303 101 289 1.51e-19 90.5
Msa1083840 AT5G41060.3 30.049 203 102 4 124 306 24 206 6.12e-19 87.8
Msa1083840 AT5G41060.4 30.049 203 102 4 124 306 24 206 6.12e-19 87.8
Msa1083840 AT5G41060.1 30.049 203 102 4 124 306 91 273 8.26e-19 88.2
Msa1083840 AT5G41060.2 30.049 203 102 4 124 306 76 258 8.62e-19 87.8
Msa1083840 AT3G26935.1 31.188 202 97 5 124 303 91 272 1.51e-18 87.4
Msa1083840 AT4G24630.1 35.915 142 71 2 160 301 136 257 5.62e-18 85.5
Msa1083840 AT3G48760.1 30.594 219 105 5 112 303 83 281 1.14e-16 82.0
Msa1083840 AT3G56930.1 34.722 144 74 2 160 303 146 269 3.02e-16 80.9
Msa1083840 AT5G20350.1 36.800 125 58 3 117 229 317 432 1.24e-15 79.3
Msa1083840 AT5G50020.1 31.280 211 92 6 117 303 71 252 3.33e-15 77.4
Msa1083840 AT5G05070.1 27.189 217 105 4 115 303 99 290 3.39e-15 77.4
Msa1083840 AT3G56920.1 35.417 144 69 3 160 303 142 261 3.59e-15 76.6
Msa1083840 AT2G40990.1 52.542 59 28 0 160 218 160 218 1.19e-14 75.5
Msa1083840 AT3G09320.1 34.507 142 67 4 162 301 99 216 4.92e-14 72.4
Msa1083840 AT1G69420.1 54.386 57 25 1 162 217 165 221 8.24e-14 73.6
Msa1083840 AT1G69420.2 54.386 57 25 1 162 217 165 221 8.24e-14 73.6
Msa1083840 AT5G04270.1 33.333 90 60 0 134 223 66 155 1.57e-13 70.9
Msa1083840 AT4G00840.2 38.824 85 43 3 127 203 71 154 6.40e-13 68.2
Msa1083840 AT4G00840.1 32.143 140 73 6 82 203 19 154 1.55e-12 68.2
Msa1083840 AT3G51390.2 40.984 61 36 0 162 222 159 219 1.21e-11 65.9
Msa1083840 AT3G51390.1 40.984 61 36 0 162 222 164 224 1.25e-11 65.9
Msa1083840 AT4G01730.1 28.977 176 104 7 127 292 116 280 2.00e-11 65.9

Find 110 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAAATTAATATCACATTTC+TGG 0.096180 7_2:+84158854 None:intergenic
ATGGAATTGAAAATTCATTT+TGG 0.153553 7_2:-84160194 Msa1083840:CDS
AAGGTTTCTTGCACAATATT+TGG 0.154742 7_2:-84159062 Msa1083840:CDS
CTTAACTTTGCAGTTTATTA+TGG 0.173681 7_2:-84160213 Msa1083840:intron
TGGCTTTCACAATGATTTAT+AGG 0.187357 7_2:+84158874 None:intergenic
AAGAATAATGTTTACAATAA+AGG 0.202965 7_2:-84159081 Msa1083840:CDS
TATTATCATGCAGTGGTTAT+TGG 0.211095 7_2:-84160064 Msa1083840:intron
ATGAAAGTGCCTTCGAAAAT+TGG 0.220315 7_2:+84164257 None:intergenic
TCGTCCCAATCCTCTCTTAC+AGG 0.291503 7_2:-84164029 Msa1083840:intron
TTGACCAGCTTTACTGATCC+TGG 0.302736 7_2:-84162617 Msa1083840:CDS
TCCTAAGATGCGTTTCCTTT+TGG 0.306530 7_2:-84158970 Msa1083840:three_prime_UTR
ATTATCATGCAGTGGTTATT+GGG 0.310919 7_2:-84160063 Msa1083840:intron
AAAGTTGTCTATATTCTAAC+AGG 0.323299 7_2:-84160316 Msa1083840:intron
TATACCTGTAATGATTGATT+TGG 0.329064 7_2:-84158703 Msa1083840:three_prime_UTR
TGGAGCCATATCTCTGAATA+AGG 0.353394 7_2:+84158469 None:intergenic
GGCTTTCACAATGATTTATA+GGG 0.354985 7_2:+84158875 None:intergenic
AGGTTTCTTGCACAATATTT+GGG 0.355157 7_2:-84159061 Msa1083840:CDS
AAGAAGAATCTGAGTGTTGT+AGG 0.368816 7_2:+84160038 None:intergenic
CTATTAAAGGTCTTGGTAGC+TGG 0.380467 7_2:-84158947 Msa1083840:three_prime_UTR
GCCAAAAGGAAACGCATCTT+AGG 0.382526 7_2:+84158969 None:intergenic
TAAATAGTATCCAGGGATAT+AGG 0.387946 7_2:+84162789 None:intergenic
ATTCACTGTTTCCTCACTTT+CGG 0.391418 7_2:-84164227 Msa1083840:CDS
GCAATTGTTGGGATGCTGTT+AGG 0.392269 7_2:-84160003 Msa1083840:CDS
CATTTCCTTCTATGTATGTA+TGG 0.394359 7_2:-84160385 Msa1083840:CDS
AGTCTATTATTGAATTGAAT+TGG 0.396384 7_2:-84164363 None:intergenic
CCATGGATTGGTGACAGCTT+TGG 0.396604 7_2:-84164309 Msa1083840:CDS
TACTGATCCTGGGACAATAA+AGG 0.405997 7_2:-84162606 Msa1083840:CDS
TAGTTGCACTTAAATTTGAA+TGG 0.407365 7_2:-84158923 Msa1083840:three_prime_UTR
GAGAAACACTCGATATTTCA+TGG 0.410575 7_2:-84162220 Msa1083840:CDS
GTAAACCTTATTCAGAGATA+TGG 0.411254 7_2:-84158474 Msa1083840:three_prime_UTR
CATGTAGTCTTGCCACTTGA+AGG 0.417053 7_2:+84159254 None:intergenic
AGGAGTTCAGGACTAGTTGT+AGG 0.419630 7_2:-84158827 Msa1083840:three_prime_UTR
TAAGCCAAATCAATCATTAC+AGG 0.426168 7_2:+84158699 None:intergenic
TTCTCAGCCTTTATTGTCCC+AGG 0.429320 7_2:+84162599 None:intergenic
AGCTTCTTCGCAGCTGCTGT+TGG 0.443853 7_2:-84162656 Msa1083840:CDS
ATGTATGGAACAGTTCTCAT+AGG 0.449403 7_2:-84160370 Msa1083840:CDS
TCTTCCTTTGCCTATATCCC+TGG 0.452747 7_2:-84162799 Msa1083840:CDS
AAGGGGTGGTAGTGCTAGAA+TGG 0.455560 7_2:-84158552 Msa1083840:three_prime_UTR
ATTTACTTACAGTCATTTCA+AGG 0.458858 7_2:+84159908 None:intergenic
ATGCTGTTAGGCGGATTCTT+CGG 0.458907 7_2:-84159991 Msa1083840:CDS
CTTCAAGTGGCAAGACTACA+TGG 0.460027 7_2:-84159253 Msa1083840:CDS
TTTGGCTTATTTCAAAGTAA+AGG 0.460436 7_2:-84158685 Msa1083840:three_prime_UTR
TGTAGAAAATACCTCATTAG+TGG 0.460618 7_2:+84159936 None:intergenic
GAAACCTGTAAGAGAGGATT+GGG 0.467880 7_2:+84164025 None:intergenic
TTTAGCTCCCCATGTTGTAC+AGG 0.468240 7_2:-84160169 Msa1083840:intron
GTTGTGATCTCTTTCCTTTG+CGG 0.475078 7_2:-84164287 Msa1083840:CDS
AGTTGCACTTAAATTTGAAT+GGG 0.475690 7_2:-84158922 Msa1083840:three_prime_UTR
TGAAACCTGTAAGAGAGGAT+TGG 0.477635 7_2:+84164024 None:intergenic
ACTTGCAGAATAATTGCATA+GGG 0.478657 7_2:-84162245 Msa1083840:intron
AATTGTTGTCAAGCAACAAA+TGG 0.480254 7_2:-84159149 Msa1083840:CDS
GTTATTGGTATGCCATGGAT+TGG 0.482314 7_2:-84164321 Msa1083840:CDS
CTGTTCCATACATACATAGA+AGG 0.484200 7_2:+84160380 None:intergenic
GTTGCACTTAAATAGTATCC+AGG 0.487943 7_2:+84162781 None:intergenic
GGTTTGTTATTGGTATGCCA+TGG 0.488441 7_2:-84164326 Msa1083840:CDS
TCATATTAGCAAAAGTAGAA+AGG 0.491478 7_2:-84158741 Msa1083840:three_prime_UTR
ATTTGTAATTGTCTTCCTTG+TGG 0.495145 7_2:-84158509 Msa1083840:three_prime_UTR
CATTAGTGGTAGTGTTACTA+AGG 0.495405 7_2:+84159950 None:intergenic
TTGAATTGAATTGGTAGTGA+TGG 0.497799 7_2:-84164354 Msa1083840:exon
TTATTTCCCCTCTCTCTACA+AGG 0.510172 7_2:-84159035 Msa1083840:CDS
TGACCAGCTTTACTGATCCT+GGG 0.517218 7_2:-84162616 Msa1083840:CDS
CTGCAATGCTTTGATCTAGC+AGG 0.517826 7_2:+84162416 None:intergenic
GAGAAAGTTAAAAGAAGCGC+AGG 0.522389 7_2:-84159223 Msa1083840:CDS
CAAGACCTTTAATAGCCAAA+AGG 0.522910 7_2:+84158955 None:intergenic
ATCTTAGGAGCATACTCAGT+TGG 0.526715 7_2:+84158984 None:intergenic
AAGATCACCTCTGGAGGATG+TGG 0.526947 7_2:-84159112 Msa1083840:CDS
TCTCTTTCCTTTGCGGTCGG+TGG 0.528235 7_2:-84164280 Msa1083840:CDS
TGAATTGAATTGGTAGTGAT+GGG 0.533289 7_2:-84164353 Msa1083840:exon
TGATCTCTTTCCTTTGCGGT+CGG 0.537219 7_2:-84164283 Msa1083840:CDS
TTTATTTATATTAGAAGAAG+GGG 0.537248 7_2:-84158569 Msa1083840:three_prime_UTR
AAGAACAGCATTGGTACACT+TGG 0.540140 7_2:+84164075 None:intergenic
CTCATAGGTTTAATTCTCGC+AGG 0.542159 7_2:-84160355 Msa1083840:CDS
TCTTGTGTCTGCGGATGTGT+TGG 0.543989 7_2:-84158779 Msa1083840:three_prime_UTR
TTCAACAGAAAGAACAGCAT+TGG 0.550937 7_2:+84164066 None:intergenic
GGTGGTAGTGCTAGAATGGT+AGG 0.552181 7_2:-84158548 Msa1083840:three_prime_UTR
AATCGTAAGCGCCGAAAGTG+AGG 0.553005 7_2:+84164216 None:intergenic
AAAATTGAAACCTGTAAGAG+AGG 0.557194 7_2:+84164019 None:intergenic
ATAGGCAAAGGAAGAGTTGA+CGG 0.558591 7_2:+84162807 None:intergenic
TGTCCCAGGATCAGTAAAGC+TGG 0.563242 7_2:+84162613 None:intergenic
TACTTGCAGAATAATTGCAT+AGG 0.565761 7_2:-84162246 Msa1083840:intron
TACTAAGGCAAAGCTTTGCA+TGG 0.571822 7_2:+84159965 None:intergenic
AAAACCTCACCTGTACAACA+TGG 0.578089 7_2:+84160160 None:intergenic
TTTGCTAATATGAAACAGTA+CGG 0.579676 7_2:+84158751 None:intergenic
CCAAAGCTGTCACCAATCCA+TGG 0.587050 7_2:+84164309 None:intergenic
TGACCATCACTGTGGATGGA+TGG 0.596777 7_2:-84162366 Msa1083840:intron
AGGACTGCCTTGTAGAGAGA+GGG 0.597622 7_2:+84159028 None:intergenic
TAGTAACACTACCACTAATG+AGG 0.600625 7_2:-84159947 Msa1083840:CDS
AGTGGCAAGACTACATGGAC+TGG 0.601667 7_2:-84159248 Msa1083840:CDS
AATCGACTGTGCATAGCTGA+TGG 0.602114 7_2:+84158627 None:intergenic
GATTTGACCATCACTGTGGA+TGG 0.605648 7_2:-84162370 Msa1083840:CDS
AATTGAATTGGTAGTGATGG+GGG 0.605936 7_2:-84164351 Msa1083840:exon
TTGCACTTAAATAGTATCCA+GGG 0.606733 7_2:+84162782 None:intergenic
ACAATAACTGATAATGTCAG+TGG 0.607105 7_2:-84158652 Msa1083840:three_prime_UTR
TAACCATCCATCCACAGTGA+TGG 0.615375 7_2:+84162363 None:intergenic
GCGCTAAAACAAAGTATCAG+TGG 0.615716 7_2:-84159189 Msa1083840:CDS
GTATCCAGGGATATAGGCAA+AGG 0.616666 7_2:+84162795 None:intergenic
CTGTATCGCAGACCTTCAAG+TGG 0.619216 7_2:-84159266 Msa1083840:intron
ATTTATATTAGAAGAAGGGG+TGG 0.624949 7_2:-84158566 Msa1083840:three_prime_UTR
TTTCTTGCACAATATTTGGG+AGG 0.625047 7_2:-84159058 Msa1083840:CDS
AAGGACTGCCTTGTAGAGAG+AGG 0.625945 7_2:+84159027 None:intergenic
AAACCTCACCTGTACAACAT+GGG 0.629986 7_2:+84160161 None:intergenic
AACCTCACCTGTACAACATG+GGG 0.636619 7_2:+84160162 None:intergenic
CTAGAATGGTAGGATCATGA+AGG 0.639864 7_2:-84158538 Msa1083840:three_prime_UTR
CTTGCAGAATAATTGCATAG+GGG 0.645521 7_2:-84162244 Msa1083840:intron
ATTGTTGGGATGCTGTTAGG+CGG 0.658661 7_2:-84160000 Msa1083840:CDS
GAATTGAATTGGTAGTGATG+GGG 0.660408 7_2:-84164352 Msa1083840:exon
GGACTGCCTTGTAGAGAGAG+GGG 0.664907 7_2:+84159029 None:intergenic
AAATTGGCCACCGACCGCAA+AGG 0.671025 7_2:+84164273 None:intergenic
ACAACTACCACATCCTCCAG+AGG 0.699566 7_2:+84159105 None:intergenic
TACTCATTGATAATTCCACA+AGG 0.706546 7_2:+84158494 None:intergenic
GCACGATTTGACCATCACTG+TGG 0.771092 7_2:-84162374 Msa1083840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAAATATATAAAA+AGG + chr7_2:84162080-84162099 None:intergenic 0.0%
!! TATAAAAATAATCTGAAAAT+AGG + chr7_2:84159687-84159706 None:intergenic 10.0%
!!! TTAGTAAAATCTAAAATAAA+CGG + chr7_2:84160546-84160565 None:intergenic 10.0%
!!! TTTTTATTTATATTAGAAGA+AGG - chr7_2:84164250-84164269 Msa1083840:CDS 10.0%
!!! TTTTATTTATATTAGAAGAA+GGG - chr7_2:84164251-84164270 Msa1083840:CDS 10.0%
!!! TATTTATTTTCACATATTGT+TGG - chr7_2:84159496-84159515 Msa1083840:intron 15.0%
!!! ATTTATTTTCACATATTGTT+GGG - chr7_2:84159497-84159516 Msa1083840:intron 15.0%
!!! TTTTTTTAAACATCATTTTG+TGG - chr7_2:84159909-84159928 Msa1083840:intron 15.0%
!! GAAAAAATGATATTATCATA+AGG + chr7_2:84160273-84160292 None:intergenic 15.0%
!! TTCATAAAACTTACTATTTA+AGG + chr7_2:84160900-84160919 None:intergenic 15.0%
!!! CGAAATTTGATAATTTTATA+GGG - chr7_2:84161176-84161195 Msa1083840:intron 15.0%
!! CTTTAGTATAAATAAGAAAA+GGG + chr7_2:84161219-84161238 None:intergenic 15.0%
!! ACTTTAGTATAAATAAGAAA+AGG + chr7_2:84161220-84161239 None:intergenic 15.0%
!! AAAAATAAAAGTAAAAACTG+AGG - chr7_2:84161399-84161418 Msa1083840:intron 15.0%
!! AAAATAAAAGTAAAAACTGA+GGG - chr7_2:84161400-84161419 Msa1083840:intron 15.0%
!!! TATTTTTTATGAAGTAGAAA+TGG - chr7_2:84162100-84162119 Msa1083840:intron 15.0%
!!! ATTTTTTATGAAGTAGAAAT+GGG - chr7_2:84162101-84162120 Msa1083840:intron 15.0%
!! TAAGTAAAAACACAATTTAT+GGG + chr7_2:84162234-84162253 None:intergenic 15.0%
!! TTAAGTAAAAACACAATTTA+TGG + chr7_2:84162235-84162254 None:intergenic 15.0%
!! TAAGTAAATTCTAGTAAATT+TGG - chr7_2:84162927-84162946 Msa1083840:intron 15.0%
!! AAACAAAACAAAAATATGTA+TGG - chr7_2:84163070-84163089 Msa1083840:intron 15.0%
!! AAGAATAATGTTTACAATAA+AGG - chr7_2:84163740-84163759 Msa1083840:intron 15.0%
!! TAAAATTAATATCACATTTC+TGG + chr7_2:84163970-84163989 None:intergenic 15.0%
!!! TGTGATATTAATTTTATTGA+AGG - chr7_2:84163974-84163993 Msa1083840:intron 15.0%
!! TTTATTTATATTAGAAGAAG+GGG - chr7_2:84164252-84164271 Msa1083840:CDS 15.0%
!! GAAGTAAATAAATTGATTGA+TGG + chr7_2:84158928-84158947 None:intergenic 20.0%
!!! ATCAATTGTCTTGATTTTAA+TGG - chr7_2:84159072-84159091 Msa1083840:CDS 20.0%
!!! AATCAATAAGAGTATAATAG+TGG - chr7_2:84159158-84159177 Msa1083840:CDS 20.0%
!!! ATCAATAAGAGTATAATAGT+GGG - chr7_2:84159159-84159178 Msa1083840:CDS 20.0%
!! CATAGATATATTTACTAAGT+AGG + chr7_2:84159284-84159303 None:intergenic 20.0%
!!! TCATTTTCTCAAATTATTAC+TGG + chr7_2:84159344-84159363 None:intergenic 20.0%
!!! ATTATTTTTATAAGCTCTCT+AGG - chr7_2:84159695-84159714 Msa1083840:intron 20.0%
!! TTTCTTATAACAAATTCATG+AGG + chr7_2:84159878-84159897 None:intergenic 20.0%
!!! TTGAAATTTTCCTTCTTTAT+AGG - chr7_2:84160488-84160507 Msa1083840:intron 20.0%
!!! TGAAATTTTCCTTCTTTATA+GGG - chr7_2:84160489-84160508 Msa1083840:intron 20.0%
!! TAAGTATTAAGGAAGTTATA+TGG + chr7_2:84160815-84160834 None:intergenic 20.0%
!! TTTCCCATAAGAAAATAATA+GGG + chr7_2:84160844-84160863 None:intergenic 20.0%
!! ATTTCCCATAAGAAAATAAT+AGG + chr7_2:84160845-84160864 None:intergenic 20.0%
!!! GCGAAATTTGATAATTTTAT+AGG - chr7_2:84161175-84161194 Msa1083840:intron 20.0%
!! AAAAGGGTTTAATAAGTAAA+TGG + chr7_2:84161203-84161222 None:intergenic 20.0%
!!! TTTTTTATGAAGTAGAAATG+GGG - chr7_2:84162102-84162121 Msa1083840:intron 20.0%
!! AAGTAAAAACACAATTTATG+GGG + chr7_2:84162233-84162252 None:intergenic 20.0%
!! GAAAAAATCACAAATAAGAA+TGG + chr7_2:84162404-84162423 None:intergenic 20.0%
!!! ATGGAATTGAAAATTCATTT+TGG - chr7_2:84162627-84162646 Msa1083840:CDS 20.0%
!!! TGGAATTGAAAATTCATTTT+GGG - chr7_2:84162628-84162647 Msa1083840:CDS 20.0%
!!! TTTTTGTTTTGAATGAACAA+AGG + chr7_2:84162982-84163001 None:intergenic 20.0%
!! TTAGTTGAGTTAAATATGTA+TGG - chr7_2:84163040-84163059 Msa1083840:intron 20.0%
!!! TAGCATTTTCTTACAAATAA+CGG + chr7_2:84163108-84163127 None:intergenic 20.0%
! TGTCAATTGTGATCATAAAT+TGG - chr7_2:84158855-84158874 Msa1083840:three_prime_UTR 25.0%
!! ACATACTTGAAGTACTAAAT+AGG + chr7_2:84158969-84158988 None:intergenic 25.0%
! ACTAAAATACCCTTATTAAG+TGG - chr7_2:84159112-84159131 Msa1083840:CDS 25.0%
! TTAACTACTCCACTTAATAA+GGG + chr7_2:84159124-84159143 None:intergenic 25.0%
! TCTCAAATTATTACTGGATA+CGG + chr7_2:84159338-84159357 None:intergenic 25.0%
! AAATAATCTGAAAATAGGCT+AGG + chr7_2:84159682-84159701 None:intergenic 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG - chr7_2:84159831-84159850 Msa1083840:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG - chr7_2:84159832-84159851 Msa1083840:intron 25.0%
!! TCAAGAAAAGAGTACAATAA+CGG + chr7_2:84160089-84160108 None:intergenic 25.0%
!! ATTTCATGGCTTTTCTTTTA+TGG - chr7_2:84160615-84160634 Msa1083840:intron 25.0%
!!! ATAAGTTTTGTAACAGAAAG+TGG - chr7_2:84160672-84160691 Msa1083840:intron 25.0%
! TAGTTGTTTAATTGTGTACT+GGG + chr7_2:84160776-84160795 None:intergenic 25.0%
! TTAGTTGTTTAATTGTGTAC+TGG + chr7_2:84160777-84160796 None:intergenic 25.0%
! TTCCCATAAGAAAATAATAG+GGG + chr7_2:84160843-84160862 None:intergenic 25.0%
! AATTTGTGTATTCAATGCAT+TGG - chr7_2:84160920-84160939 Msa1083840:intron 25.0%
!! ATGTTTTTCGTCACTAATTT+TGG + chr7_2:84161112-84161131 None:intergenic 25.0%
!!! AACTTGGTGAAAATTTTTAG+AGG - chr7_2:84161144-84161163 Msa1083840:intron 25.0%
!!! ACTTGGTGAAAATTTTTAGA+GGG - chr7_2:84161145-84161164 Msa1083840:intron 25.0%
! AATAGTATTAACCAAGGTAA+AGG + chr7_2:84161431-84161450 None:intergenic 25.0%
! AACATCATAACAGGATATTT+CGG + chr7_2:84161514-84161533 None:intergenic 25.0%
! AAATATCCTGTTATGATGTT+AGG - chr7_2:84161514-84161533 Msa1083840:intron 25.0%
! ATAAAAAGGTTCTCCATAAA+AGG + chr7_2:84162066-84162085 None:intergenic 25.0%
!! CATCTAAAATTGAATTTCAC+AGG + chr7_2:84162198-84162217 None:intergenic 25.0%
! TTGTTTCGCTTACATATATT+AGG - chr7_2:84162256-84162275 Msa1083840:intron 25.0%
!! CATAGTACTACAAATTTTAG+TGG - chr7_2:84162318-84162337 Msa1083840:intron 25.0%
! AATGAAAATGCATACTGTAT+TGG + chr7_2:84162374-84162393 None:intergenic 25.0%
!! ACAGTATGCATTTTCATTTT+AGG - chr7_2:84162376-84162395 Msa1083840:CDS 25.0%
! AAAGTTGTCTATATTCTAAC+AGG - chr7_2:84162505-84162524 Msa1083840:intron 25.0%
! CTTAACTTTGCAGTTTATTA+TGG - chr7_2:84162608-84162627 Msa1083840:CDS 25.0%
! ATTTACTTACAGTCATTTCA+AGG + chr7_2:84162916-84162935 None:intergenic 25.0%
! GTAAATTCTAGTAAATTTGG+AGG - chr7_2:84162930-84162949 Msa1083840:intron 25.0%
! ATGAGATCACTAATGTTATA+GGG + chr7_2:84163006-84163025 None:intergenic 25.0%
! AATGAGATCACTAATGTTAT+AGG + chr7_2:84163007-84163026 None:intergenic 25.0%
!! ATAATACATGATTTGGAAGT+TGG - chr7_2:84163131-84163150 Msa1083840:intron 25.0%
! TTATCATTATCCAATCTACT+TGG - chr7_2:84163441-84163460 Msa1083840:intron 25.0%
!!! TTTCAACTTTGTTTTCGTAA+AGG + chr7_2:84163816-84163835 None:intergenic 25.0%
! TAGTTGCACTTAAATTTGAA+TGG - chr7_2:84163898-84163917 Msa1083840:intron 25.0%
! AGTTGCACTTAAATTTGAAT+GGG - chr7_2:84163899-84163918 Msa1083840:intron 25.0%
!! TAATTTTATTGAAGGAGTTC+AGG - chr7_2:84163982-84164001 Msa1083840:intron 25.0%
! TTTGCTAATATGAAACAGTA+CGG + chr7_2:84164073-84164092 None:intergenic 25.0%
! TCATATTAGCAAAAGTAGAA+AGG - chr7_2:84164080-84164099 Msa1083840:CDS 25.0%
! TATACCTGTAATGATTGATT+TGG - chr7_2:84164118-84164137 Msa1083840:intron 25.0%
!! TTTGGCTTATTTCAAAGTAA+AGG - chr7_2:84164136-84164155 Msa1083840:intron 25.0%
!! TTGAATTGAATTGGTAGTGA+TGG - chr7_2:84158467-84158486 Msa1083840:three_prime_UTR 30.0%
!! TGAATTGAATTGGTAGTGAT+GGG - chr7_2:84158468-84158487 Msa1083840:three_prime_UTR 30.0%
AAAATTGAAACCTGTAAGAG+AGG + chr7_2:84158805-84158824 None:intergenic 30.0%
!! CACAAACCTATATTTTGAGA+CGG + chr7_2:84159033-84159052 None:intergenic 30.0%
CTTAACTACTCCACTTAATA+AGG + chr7_2:84159125-84159144 None:intergenic 30.0%
GGTTGAATAATCCATCAATT+TGG + chr7_2:84159555-84159574 None:intergenic 30.0%
TCTACTGACATAATCACTTT+CGG - chr7_2:84159620-84159639 Msa1083840:intron 30.0%
GGGATTATAGAAATAGCTTA+TGG - chr7_2:84159651-84159670 Msa1083840:intron 30.0%
GATAGCTTATGAAAACAACT+TGG - chr7_2:84159717-84159736 Msa1083840:intron 30.0%
TAAATAGTATCCAGGGATAT+AGG + chr7_2:84160035-84160054 None:intergenic 30.0%
TTGCACTTAAATAGTATCCA+GGG + chr7_2:84160042-84160061 None:intergenic 30.0%
TTTGCTGCTAGTGTTAAATT+TGG - chr7_2:84160331-84160350 Msa1083840:CDS 30.0%
TACTTGCAGAATAATTGCAT+AGG - chr7_2:84160575-84160594 Msa1083840:intron 30.0%
ACTTGCAGAATAATTGCATA+GGG - chr7_2:84160576-84160595 Msa1083840:intron 30.0%
AGTTGTTTAATTGTGTACTG+GGG + chr7_2:84160775-84160794 None:intergenic 30.0%
! TGCCCCTATTATTTTCTTAT+GGG - chr7_2:84160838-84160857 Msa1083840:intron 30.0%
TTAGTGACGAAAAACATTTG+AGG - chr7_2:84161115-84161134 Msa1083840:intron 30.0%
TAGTGACGAAAAACATTTGA+GGG - chr7_2:84161116-84161135 Msa1083840:intron 30.0%
AAGAGTCCAAAATCAAAATG+TGG + chr7_2:84161290-84161309 None:intergenic 30.0%
AACTTCTTCATAAAAGAAGC+TGG - chr7_2:84161363-84161382 Msa1083840:intron 30.0%
ACTTCTTCATAAAAGAAGCT+GGG - chr7_2:84161364-84161383 Msa1083840:intron 30.0%
AAAGATTTAAAGGTTGTTGC+AGG + chr7_2:84161565-84161584 None:intergenic 30.0%
AAATGAAGAGTTACTGTTCA+TGG + chr7_2:84161644-84161663 None:intergenic 30.0%
ATCTTAACCCACACAAAATT+TGG - chr7_2:84162036-84162055 Msa1083840:intron 30.0%
!!! AAAATTTGGTGCACCTTTTA+TGG - chr7_2:84162050-84162069 Msa1083840:intron 30.0%
CATTTCCTTCTATGTATGTA+TGG - chr7_2:84162436-84162455 Msa1083840:intron 30.0%
! TCTTCCTATTTTCCATTTTG+TGG - chr7_2:84162722-84162741 Msa1083840:intron 30.0%
TTGACCACAAAATGGAAAAT+AGG + chr7_2:84162729-84162748 None:intergenic 30.0%
ACATATCATTGACCACAAAA+TGG + chr7_2:84162737-84162756 None:intergenic 30.0%
GATATGTTATTATCATGCAG+TGG - chr7_2:84162750-84162769 Msa1083840:intron 30.0%
TATTATCATGCAGTGGTTAT+TGG - chr7_2:84162757-84162776 Msa1083840:intron 30.0%
ATTATCATGCAGTGGTTATT+GGG - chr7_2:84162758-84162777 Msa1083840:intron 30.0%
! ATAGTTTTCGTTGCAATTGT+TGG - chr7_2:84162806-84162825 Msa1083840:CDS 30.0%
! TAGTTTTCGTTGCAATTGTT+GGG - chr7_2:84162807-84162826 Msa1083840:CDS 30.0%
TGTAGAAAATACCTCATTAG+TGG + chr7_2:84162888-84162907 None:intergenic 30.0%
!! AATGAGGTATTTTCTACATC+TGG - chr7_2:84162890-84162909 Msa1083840:intron 30.0%
CATTAGTGATCTCATTACTA+TGG - chr7_2:84163011-84163030 Msa1083840:intron 30.0%
GCTAAGCATAATACATGATT+TGG - chr7_2:84163124-84163143 Msa1083840:intron 30.0%
AACCAGCAAAACTGTATAAA+TGG + chr7_2:84163381-84163400 None:intergenic 30.0%
TGATAAAATACCTAGAGCAA+TGG + chr7_2:84163427-84163446 None:intergenic 30.0%
AATTGTTGTCAAGCAACAAA+TGG - chr7_2:84163672-84163691 Msa1083840:intron 30.0%
AAGGTTTCTTGCACAATATT+TGG - chr7_2:84163759-84163778 Msa1083840:intron 30.0%
AGGTTTCTTGCACAATATTT+GGG - chr7_2:84163760-84163779 Msa1083840:intron 30.0%
GGCTTTCACAATGATTTATA+GGG + chr7_2:84163949-84163968 None:intergenic 30.0%
TGGCTTTCACAATGATTTAT+AGG + chr7_2:84163950-84163969 None:intergenic 30.0%
!!! TTTTTTAGTTCTTGTGTCTG+CGG - chr7_2:84164033-84164052 Msa1083840:CDS 30.0%
TAAGCCAAATCAATCATTAC+AGG + chr7_2:84164125-84164144 None:intergenic 30.0%
! ACAATAACTGATAATGTCAG+TGG - chr7_2:84164169-84164188 Msa1083840:intron 30.0%
ATTTATATTAGAAGAAGGGG+TGG - chr7_2:84164255-84164274 Msa1083840:CDS 30.0%
ATTTGTAATTGTCTTCCTTG+TGG - chr7_2:84164312-84164331 Msa1083840:CDS 30.0%
! TACTCATTGATAATTCCACA+AGG + chr7_2:84164330-84164349 None:intergenic 30.0%
GTAAACCTTATTCAGAGATA+TGG - chr7_2:84164347-84164366 Msa1083840:exon 30.0%
!! GAATTGAATTGGTAGTGATG+GGG - chr7_2:84158469-84158488 Msa1083840:three_prime_UTR 35.0%
!! AATTGAATTGGTAGTGATGG+GGG - chr7_2:84158470-84158489 Msa1083840:three_prime_UTR 35.0%
!! ATGAAAGTGCCTTCGAAAAT+TGG + chr7_2:84158567-84158586 None:intergenic 35.0%
ATTCACTGTTTCCTCACTTT+CGG - chr7_2:84158594-84158613 Msa1083840:three_prime_UTR 35.0%
TTCAACAGAAAGAACAGCAT+TGG + chr7_2:84158758-84158777 None:intergenic 35.0%
!!! AAACCTATATTTTGAGACGG+AGG + chr7_2:84159030-84159049 None:intergenic 35.0%
TGGAGAGAGAATGATACTTT+AGG - chr7_2:84159527-84159546 Msa1083840:intron 35.0%
GGAGAGAGAATGATACTTTA+GGG - chr7_2:84159528-84159547 Msa1083840:intron 35.0%
! TACTTTAGGGACCAAATTGA+TGG - chr7_2:84159541-84159560 Msa1083840:intron 35.0%
ATTCAACCAAATTGTGACTC+AGG - chr7_2:84159567-84159586 Msa1083840:intron 35.0%
TTCAACCAAATTGTGACTCA+GGG - chr7_2:84159568-84159587 Msa1083840:intron 35.0%
TAATCACTTTCGGAAACTGT+TGG - chr7_2:84159630-84159649 Msa1083840:intron 35.0%
AATCACTTTCGGAAACTGTT+GGG - chr7_2:84159631-84159650 Msa1083840:intron 35.0%
GTTGCACTTAAATAGTATCC+AGG + chr7_2:84160043-84160062 None:intergenic 35.0%
TTTAAGTGCAACTCACAAGT+AGG - chr7_2:84160051-84160070 Msa1083840:CDS 35.0%
TTAAGTGCAACTCACAAGTA+GGG - chr7_2:84160052-84160071 Msa1083840:CDS 35.0%
!!! TCACTTTGGAATTTTGCAAG+TGG + chr7_2:84160310-84160329 None:intergenic 35.0%
TTTATTAAGAGTCGCTTGAG+TGG + chr7_2:84160515-84160534 None:intergenic 35.0%
CTTGCAGAATAATTGCATAG+GGG - chr7_2:84160577-84160596 Msa1083840:intron 35.0%
GAGAAACACTCGATATTTCA+TGG - chr7_2:84160601-84160620 Msa1083840:intron 35.0%
TTTATGGTGAGCTCTATATG+TGG - chr7_2:84160631-84160650 Msa1083840:intron 35.0%
TAGGGGCAGAATAAGTATTA+AGG + chr7_2:84160826-84160845 None:intergenic 35.0%
! CTGCCCCTATTATTTTCTTA+TGG - chr7_2:84160837-84160856 Msa1083840:intron 35.0%
!! ACCCTTTTCTTATTTATCCC+AGG - chr7_2:84161027-84161046 Msa1083840:intron 35.0%
CCCTGGGATAAATAAGAAAA+GGG + chr7_2:84161031-84161050 None:intergenic 35.0%
!! CCCTTTTCTTATTTATCCCA+GGG - chr7_2:84161028-84161047 Msa1083840:intron 35.0%
ACCCTGGGATAAATAAGAAA+AGG + chr7_2:84161032-84161051 None:intergenic 35.0%
AGTCAACTCCATTTAACAGT+TGG - chr7_2:84161084-84161103 Msa1083840:intron 35.0%
GTCAACTCCATTTAACAGTT+GGG - chr7_2:84161085-84161104 Msa1083840:intron 35.0%
! TTTTGGTCCCAACTGTTAAA+TGG + chr7_2:84161095-84161114 None:intergenic 35.0%
ACATTTGAGGGACTAAAACT+TGG - chr7_2:84161128-84161147 Msa1083840:intron 35.0%
! CGGAAAACAAGTCTAAAATG+TGG + chr7_2:84161250-84161269 None:intergenic 35.0%
!!! TCATGGCCACATTTTGATTT+TGG - chr7_2:84161281-84161300 Msa1083840:intron 35.0%
CAGCTCAATAGTATTAACCA+AGG + chr7_2:84161437-84161456 None:intergenic 35.0%
TCAGAACCTAACATCATAAC+AGG + chr7_2:84161523-84161542 None:intergenic 35.0%
ACAAGATCTGACTGTAAACT+TGG - chr7_2:84161715-84161734 Msa1083840:intron 35.0%
! TCCTCGATTTCCTTTTTGTT+GGG - chr7_2:84161745-84161764 Msa1083840:intron 35.0%
! TTTTTGTTGGGGTTGCAATT+GGG - chr7_2:84161757-84161776 Msa1083840:intron 35.0%
! GTTGCAATTGGGATTTTATG+CGG - chr7_2:84161768-84161787 Msa1083840:intron 35.0%
! TTGCAATTGGGATTTTATGC+GGG - chr7_2:84161769-84161788 Msa1083840:intron 35.0%
! GTCATTATCTTTGAAAGCTG+AGG + chr7_2:84161899-84161918 None:intergenic 35.0%
! CTAATATGACTGGTTATAGC+AGG + chr7_2:84162130-84162149 None:intergenic 35.0%
CTGCTATAACCAGTCATATT+AGG - chr7_2:84162128-84162147 Msa1083840:intron 35.0%
CTATAACCAGTCATATTAGG+AGG - chr7_2:84162131-84162150 Msa1083840:intron 35.0%
CACATTGGACCTTAAAGAAA+GGG - chr7_2:84162156-84162175 Msa1083840:intron 35.0%
ACATTGGACCTTAAAGAAAG+GGG - chr7_2:84162157-84162176 Msa1083840:intron 35.0%
ATATCATATCAATGCCAGAG+TGG + chr7_2:84162351-84162370 None:intergenic 35.0%
!!! GTGATTTTTTCGTGTCTTGT+AGG - chr7_2:84162413-84162432 Msa1083840:CDS 35.0%
CTGTTCCATACATACATAGA+AGG + chr7_2:84162444-84162463 None:intergenic 35.0%
ATGTATGGAACAGTTCTCAT+AGG - chr7_2:84162451-84162470 Msa1083840:intron 35.0%
! AAGAAGAATCTGAGTGTTGT+AGG + chr7_2:84162786-84162805 None:intergenic 35.0%
! CATTAGTGGTAGTGTTACTA+AGG + chr7_2:84162874-84162893 None:intergenic 35.0%
TAGTAACACTACCACTAATG+AGG - chr7_2:84162874-84162893 Msa1083840:intron 35.0%
TGAATGAACAAAGGAGAGTA+TGG + chr7_2:84162973-84162992 None:intergenic 35.0%
!! CTTACAAATAACGGACATAG+CGG + chr7_2:84163099-84163118 None:intergenic 35.0%
TGACAAAATGACATCTTTGC+TGG - chr7_2:84163188-84163207 Msa1083840:intron 35.0%
AATTGCAGCAGGATTTAAAC+TGG + chr7_2:84163220-84163239 None:intergenic 35.0%
AATTCTCATCAAATTGCAGC+AGG + chr7_2:84163231-84163250 None:intergenic 35.0%
ACAAACAAGATGCAGAGAAA+GGG + chr7_2:84163291-84163310 None:intergenic 35.0%
AGCAATGATTCTGCTACTAT+TGG + chr7_2:84163314-84163333 None:intergenic 35.0%
! AGCCATTTATACAGTTTTGC+TGG - chr7_2:84163376-84163395 Msa1083840:intron 35.0%
TAACTAGTGCTTCTGATAAG+CGG + chr7_2:84163495-84163514 None:intergenic 35.0%
!!! ATTTTTTCGAAGATCACCTC+TGG - chr7_2:84163700-84163719 Msa1083840:intron 35.0%
TTTCTTGCACAATATTTGGG+AGG - chr7_2:84163763-84163782 Msa1083840:intron 35.0%
!! CGTTTCCTTTTGGCTATTAA+AGG - chr7_2:84163861-84163880 Msa1083840:intron 35.0%
CAAGACCTTTAATAGCCAAA+AGG + chr7_2:84163869-84163888 None:intergenic 35.0%
!! CTTTTGGCTATTAAAGGTCT+TGG - chr7_2:84163867-84163886 Msa1083840:intron 35.0%
!! GGTTTGTTATTGGTATGCCA+TGG - chr7_2:84158495-84158514 Msa1083840:three_prime_UTR 40.0%
GTTATTGGTATGCCATGGAT+TGG - chr7_2:84158500-84158519 Msa1083840:three_prime_UTR 40.0%
GTTGTGATCTCTTTCCTTTG+CGG - chr7_2:84158534-84158553 Msa1083840:three_prime_UTR 40.0%
GAGAGAGTTAGTTACAGTAC+AGG + chr7_2:84158635-84158654 None:intergenic 40.0%
GAGATTAGTGAGTGAGATTG+AGG + chr7_2:84158696-84158715 None:intergenic 40.0%
ATCTCACTCACTAATCTCTC+AGG - chr7_2:84158698-84158717 Msa1083840:three_prime_UTR 40.0%
! TAATCTCTCAGGCGTTTTGT+TGG - chr7_2:84158709-84158728 Msa1083840:three_prime_UTR 40.0%
!! AAGAACAGCATTGGTACACT+TGG + chr7_2:84158749-84158768 None:intergenic 40.0%
GAAACCTGTAAGAGAGGATT+GGG + chr7_2:84158799-84158818 None:intergenic 40.0%
TGAAACCTGTAAGAGAGGAT+TGG + chr7_2:84158800-84158819 None:intergenic 40.0%
CTTCCTCCGTCTCAAAATAT+AGG - chr7_2:84159024-84159043 Msa1083840:CDS 40.0%
! ACTCCTTTGATCAAGGGTAT+CGG - chr7_2:84159416-84159435 Msa1083840:intron 40.0%
ACATATTGTTGGGACTGAAC+TGG - chr7_2:84159507-84159526 Msa1083840:intron 40.0%
TCAACCAAATTGTGACTCAG+GGG - chr7_2:84159569-84159588 Msa1083840:intron 40.0%
! AGGTATAATGCCCCTGTTTT+GGG + chr7_2:84159858-84159877 None:intergenic 40.0%
! CATTTTGTGGTGTTCTCTGT+TGG - chr7_2:84159922-84159941 Msa1083840:CDS 40.0%
ATAGGCAAAGGAAGAGTTGA+CGG + chr7_2:84160017-84160036 None:intergenic 40.0%
CCTAAGGTCTAACAGAATTC+AGG + chr7_2:84160139-84160158 None:intergenic 40.0%
CCTGAATTCTGTTAGACCTT+AGG - chr7_2:84160136-84160155 Msa1083840:intron 40.0%
TACTGATCCTGGGACAATAA+AGG - chr7_2:84160215-84160234 Msa1083840:intron 40.0%
!! TAATCCTTAAAGAGTGCCAC+AGG - chr7_2:84160987-84161006 Msa1083840:intron 40.0%
!! AATCCTTAAAGAGTGCCACA+GGG - chr7_2:84160988-84161007 Msa1083840:intron 40.0%
! TCTTATTTATCCCAGGGTAC+AGG - chr7_2:84161034-84161053 Msa1083840:intron 40.0%
ATCAAAATGTGGCCATGATC+TGG + chr7_2:84161279-84161298 None:intergenic 40.0%
TGAGGGAATTTCCTTTACCT+TGG - chr7_2:84161417-84161436 Msa1083840:intron 40.0%
TGATGATCACACAAAACACG+AGG - chr7_2:84161455-84161474 Msa1083840:intron 40.0%
TCTGACTGTAAACTTGGACT+TGG - chr7_2:84161721-84161740 Msa1083840:intron 40.0%
CTGACTGTAAACTTGGACTT+GGG - chr7_2:84161722-84161741 Msa1083840:intron 40.0%
! GTCCTCGATTTCCTTTTTGT+TGG - chr7_2:84161744-84161763 Msa1083840:intron 40.0%
! CCTCGATTTCCTTTTTGTTG+GGG - chr7_2:84161746-84161765 Msa1083840:intron 40.0%
CAATTGCAACCCCAACAAAA+AGG + chr7_2:84161758-84161777 None:intergenic 40.0%
! CTTTTTGTTGGGGTTGCAAT+TGG - chr7_2:84161756-84161775 Msa1083840:intron 40.0%
GAGAAGTTGCAACGTAATGT+GGG - chr7_2:84161812-84161831 Msa1083840:intron 40.0%
TAAGATTGCAATGGAGTTGG+TGG + chr7_2:84162022-84162041 None:intergenic 40.0%
GGTTAAGATTGCAATGGAGT+TGG + chr7_2:84162025-84162044 None:intergenic 40.0%
! TGTGTGGGTTAAGATTGCAA+TGG + chr7_2:84162031-84162050 None:intergenic 40.0%
! AGGTGCACCAAATTTTGTGT+GGG + chr7_2:84162046-84162065 None:intergenic 40.0%
! AAGGTGCACCAAATTTTGTG+TGG + chr7_2:84162047-84162066 None:intergenic 40.0%
TCATATTAGGAGGTCCACAT+TGG - chr7_2:84162141-84162160 Msa1083840:intron 40.0%
!! CCTTTCTTTAAGGTCCAATG+TGG + chr7_2:84162158-84162177 None:intergenic 40.0%
CCACATTGGACCTTAAAGAA+AGG - chr7_2:84162155-84162174 Msa1083840:intron 40.0%
AATTCGGTCCCCTTTCTTTA+AGG + chr7_2:84162168-84162187 None:intergenic 40.0%
AAAGAAAGGGGACCGAATTA+AGG - chr7_2:84162169-84162188 Msa1083840:intron 40.0%
AAGAAAGGGGACCGAATTAA+GGG - chr7_2:84162170-84162189 Msa1083840:intron 40.0%
TTTCACAGGAGCCCTTAATT+CGG + chr7_2:84162184-84162203 None:intergenic 40.0%
CTCATAGGTTTAATTCTCGC+AGG - chr7_2:84162466-84162485 Msa1083840:intron 40.0%
AAACCTCACCTGTACAACAT+GGG + chr7_2:84162663-84162682 None:intergenic 40.0%
AAAACCTCACCTGTACAACA+TGG + chr7_2:84162664-84162683 None:intergenic 40.0%
TACTAAGGCAAAGCTTTGCA+TGG + chr7_2:84162859-84162878 None:intergenic 40.0%
GACAAACAAGATGCAGAGAA+AGG + chr7_2:84163292-84163311 None:intergenic 40.0%
! TGGCTCTATCTGAATTCAAG+TGG + chr7_2:84163361-84163380 None:intergenic 40.0%
TGCATAAGTACCATTGCTCT+AGG - chr7_2:84163414-84163433 Msa1083840:intron 40.0%
CACTAGTTATACCACGAACA+TGG - chr7_2:84163506-84163525 Msa1083840:intron 40.0%
ATGGAACTCAATGCAGCTAA+TGG - chr7_2:84163525-84163544 Msa1083840:intron 40.0%
! GAGAAAGTTAAAAGAAGCGC+AGG - chr7_2:84163598-84163617 Msa1083840:intron 40.0%
! GCGCTAAAACAAAGTATCAG+TGG - chr7_2:84163632-84163651 Msa1083840:intron 40.0%
TTATTTCCCCTCTCTCTACA+AGG - chr7_2:84163786-84163805 Msa1083840:intron 40.0%
! ATCTTAGGAGCATACTCAGT+TGG + chr7_2:84163840-84163859 None:intergenic 40.0%
! TCCTAAGATGCGTTTCCTTT+TGG - chr7_2:84163851-84163870 Msa1083840:intron 40.0%
! CTATTAAAGGTCTTGGTAGC+TGG - chr7_2:84163874-84163893 Msa1083840:intron 40.0%
CTAGAATGGTAGGATCATGA+AGG - chr7_2:84164283-84164302 Msa1083840:CDS 40.0%
TGGAGCCATATCTCTGAATA+AGG + chr7_2:84164355-84164374 None:intergenic 40.0%
!! GATGGGGGTAGGTTTGTTAT+TGG - chr7_2:84158485-84158504 Msa1083840:three_prime_UTR 45.0%
TGATCTCTTTCCTTTGCGGT+CGG - chr7_2:84158538-84158557 Msa1083840:three_prime_UTR 45.0%
!! CGTTTTGTTGGCGCTGTTTT+TGG - chr7_2:84158721-84158740 Msa1083840:three_prime_UTR 45.0%
ACACGACACTCCTTTGATCA+AGG - chr7_2:84159409-84159428 Msa1083840:intron 45.0%
CACGACACTCCTTTGATCAA+GGG - chr7_2:84159410-84159429 Msa1083840:intron 45.0%
! GAGGTATAATGCCCCTGTTT+TGG + chr7_2:84159859-84159878 None:intergenic 45.0%
TCTTCCTTTGCCTATATCCC+TGG - chr7_2:84160022-84160041 Msa1083840:CDS 45.0%
GTATCCAGGGATATAGGCAA+AGG + chr7_2:84160029-84160048 None:intergenic 45.0%
AGAGTACAATAACGGCGTGT+CGG + chr7_2:84160081-84160100 None:intergenic 45.0%
CGAAGAAGCTTGTGTACCTA+AGG + chr7_2:84160155-84160174 None:intergenic 45.0%
TTGACCAGCTTTACTGATCC+TGG - chr7_2:84160204-84160223 Msa1083840:intron 45.0%
TGACCAGCTTTACTGATCCT+GGG - chr7_2:84160205-84160224 Msa1083840:intron 45.0%
TTCTCAGCCTTTATTGTCCC+AGG + chr7_2:84160225-84160244 None:intergenic 45.0%
CACTAGCAGCAAACTCACTT+TGG + chr7_2:84160324-84160343 None:intergenic 45.0%
CTGCAATGCTTTGATCTAGC+AGG + chr7_2:84160408-84160427 None:intergenic 45.0%
GATTTGACCATCACTGTGGA+TGG - chr7_2:84160451-84160470 Msa1083840:intron 45.0%
TAACCATCCATCCACAGTGA+TGG + chr7_2:84160461-84160480 None:intergenic 45.0%
CTTGAGTGGCCCTATAAAGA+AGG + chr7_2:84160501-84160520 None:intergenic 45.0%
!! AGGTGCTTAAAGAGTGTCTC+CGG + chr7_2:84160880-84160899 None:intergenic 45.0%
!! ATCCTTAAAGAGTGCCACAG+GGG - chr7_2:84160989-84161008 Msa1083840:intron 45.0%
TTTCCGCATGATCCAGATCA+TGG - chr7_2:84161264-84161283 Msa1083840:intron 45.0%
CCCCAACAAAAAGGAAATCG+AGG + chr7_2:84161749-84161768 None:intergenic 45.0%
TATGCGGGTCGTTTATGTGA+TGG - chr7_2:84161784-84161803 Msa1083840:intron 45.0%
ATGCGGGTCGTTTATGTGAT+GGG - chr7_2:84161785-84161804 Msa1083840:intron 45.0%
! GGTCGTTTATGTGATGGGAT+GGG - chr7_2:84161790-84161809 Msa1083840:intron 45.0%
GGAGAAGTTGCAACGTAATG+TGG - chr7_2:84161811-84161830 Msa1083840:intron 45.0%
CGTAATGTGGGAGTTGTTTG+AGG - chr7_2:84161824-84161843 Msa1083840:intron 45.0%
TGTGGACCTCCTAATATGAC+TGG + chr7_2:84162140-84162159 None:intergenic 45.0%
! TTAGTGGCTGATTTCCACTC+TGG - chr7_2:84162334-84162353 Msa1083840:intron 45.0%
! TTTAGCTCCCCATGTTGTAC+AGG - chr7_2:84162652-84162671 Msa1083840:CDS 45.0%
AACCTCACCTGTACAACATG+GGG + chr7_2:84162662-84162681 None:intergenic 45.0%
GCAATTGTTGGGATGCTGTT+AGG - chr7_2:84162818-84162837 Msa1083840:CDS 45.0%
ATTGTTGGGATGCTGTTAGG+CGG - chr7_2:84162821-84162840 Msa1083840:CDS 45.0%
! ATGCTGTTAGGCGGATTCTT+CGG - chr7_2:84162830-84162849 Msa1083840:CDS 45.0%
!! GAGTATGGCTTGCTACTTTC+TGG + chr7_2:84162958-84162977 None:intergenic 45.0%
TGCATTGAGTTCCATGTTCG+TGG + chr7_2:84163520-84163539 None:intergenic 45.0%
! CATGTAGTCTTGCCACTTGA+AGG + chr7_2:84163570-84163589 None:intergenic 45.0%
CTTCAAGTGGCAAGACTACA+TGG - chr7_2:84163568-84163587 Msa1083840:intron 45.0%
! TTTTCGAAGATCACCTCTGG+AGG - chr7_2:84163703-84163722 Msa1083840:intron 45.0%
GCCAAAAGGAAACGCATCTT+AGG + chr7_2:84163855-84163874 None:intergenic 45.0%
!! AGGAGTTCAGGACTAGTTGT+AGG - chr7_2:84163994-84164013 Msa1083840:intron 45.0%
AATCGACTGTGCATAGCTGA+TGG + chr7_2:84164197-84164216 None:intergenic 45.0%
!!! TTTTTATAATAAAGATTTAA+AGG + chr7_2:84161575-84161594 None:intergenic 5.0%
!! GAATTGGTAGTGATGGGGGT+AGG - chr7_2:84158474-84158493 Msa1083840:three_prime_UTR 50.0%
CCAAAGCTGTCACCAATCCA+TGG + chr7_2:84158515-84158534 None:intergenic 50.0%
!! CCATGGATTGGTGACAGCTT+TGG - chr7_2:84158512-84158531 Msa1083840:three_prime_UTR 50.0%
!! AATCGTAAGCGCCGAAAGTG+AGG + chr7_2:84158608-84158627 None:intergenic 50.0%
TCGTCCCAATCCTCTCTTAC+AGG - chr7_2:84158792-84158811 Msa1083840:three_prime_UTR 50.0%
! GCACCGATACCCTTGATCAA+AGG + chr7_2:84159422-84159441 None:intergenic 50.0%
!! CAAGGGTATCGGTGCTACAA+AGG - chr7_2:84159427-84159446 Msa1083840:intron 50.0%
CAGACCCCTGAGTCACAATT+TGG + chr7_2:84159576-84159595 None:intergenic 50.0%
TTGTGACTCAGGGGTCTGTT+TGG - chr7_2:84159578-84159597 Msa1083840:intron 50.0%
ATCCAAACAGGGCCCAAAAC+AGG - chr7_2:84159843-84159862 Msa1083840:intron 50.0%
TCCAAACAGGGCCCAAAACA+GGG - chr7_2:84159844-84159863 Msa1083840:intron 50.0%
GAGTACAATAACGGCGTGTC+GGG + chr7_2:84160080-84160099 None:intergenic 50.0%
TGTCCCAGGATCAGTAAAGC+TGG + chr7_2:84160211-84160230 None:intergenic 50.0%
GCACGATTTGACCATCACTG+TGG - chr7_2:84160447-84160466 Msa1083840:intron 50.0%
TGACCATCACTGTGGATGGA+TGG - chr7_2:84160455-84160474 Msa1083840:intron 50.0%
TGTGTACTGGGGAAGTCATG+CGG + chr7_2:84160764-84160783 None:intergenic 50.0%
!! GTGCTTAAAGAGTGTCTCCG+GGG + chr7_2:84160878-84160897 None:intergenic 50.0%
!! GGTGCTTAAAGAGTGTCTCC+GGG + chr7_2:84160879-84160898 None:intergenic 50.0%
!! TCCTTAAAGAGTGCCACAGG+GGG - chr7_2:84160990-84161009 Msa1083840:intron 50.0%
! GGAGTTGACTGACTCTGACA+TGG + chr7_2:84161074-84161093 None:intergenic 50.0%
TGGCCATGATCTGGATCATG+CGG + chr7_2:84161270-84161289 None:intergenic 50.0%
! GGGTCGTTTATGTGATGGGA+TGG - chr7_2:84161789-84161808 Msa1083840:intron 50.0%
GTGGGAGTTGTTTGAGGAGA+TGG - chr7_2:84161830-84161849 Msa1083840:intron 50.0%
CAGAGTGAACGTGAAGGAGA+GGG + chr7_2:84161965-84161984 None:intergenic 50.0%
ACAGAGTGAACGTGAAGGAG+AGG + chr7_2:84161966-84161985 None:intergenic 50.0%
!! TGGAGTTGGTGGAGATACAG+CGG + chr7_2:84162011-84162030 None:intergenic 50.0%
TCACAACCCTGCACAAACTG+TGG - chr7_2:84163335-84163354 Msa1083840:intron 50.0%
AAGTGGCCACAGTTTGTGCA+GGG + chr7_2:84163344-84163363 None:intergenic 50.0%
CTGTATCGCAGACCTTCAAG+TGG - chr7_2:84163555-84163574 Msa1083840:intron 50.0%
AGTGGCAAGACTACATGGAC+TGG - chr7_2:84163573-84163592 Msa1083840:intron 50.0%
!!! TTGTTTTAGCGCTGCAGCAC+TGG + chr7_2:84163624-84163643 None:intergenic 50.0%
! AAGATCACCTCTGGAGGATG+TGG - chr7_2:84163709-84163728 Msa1083840:intron 50.0%
ACAACTACCACATCCTCCAG+AGG + chr7_2:84163719-84163738 None:intergenic 50.0%
AGGACTGCCTTGTAGAGAGA+GGG + chr7_2:84163796-84163815 None:intergenic 50.0%
AAGGACTGCCTTGTAGAGAG+AGG + chr7_2:84163797-84163816 None:intergenic 50.0%
TCTTGTGTCTGCGGATGTGT+TGG - chr7_2:84164042-84164061 Msa1083840:CDS 50.0%
! AAGGGGTGGTAGTGCTAGAA+TGG - chr7_2:84164269-84164288 Msa1083840:CDS 50.0%
! GGTGGTAGTGCTAGAATGGT+AGG - chr7_2:84164273-84164292 Msa1083840:CDS 50.0%
TCTCTTTCCTTTGCGGTCGG+TGG - chr7_2:84158541-84158560 Msa1083840:three_prime_UTR 55.0%
AAATTGGCCACCGACCGCAA+AGG + chr7_2:84158551-84158570 None:intergenic 55.0%
! GGTCGGTGGCCAATTTTCGA+AGG - chr7_2:84158555-84158574 Msa1083840:three_prime_UTR 55.0%
CCAAACAGGGCCCAAAACAG+GGG - chr7_2:84159845-84159864 Msa1083840:intron 55.0%
AGCTTCTTCGCAGCTGCTGT+TGG - chr7_2:84160165-84160184 Msa1083840:intron 55.0%
TACTGGGGAAGTCATGCGGT+AGG + chr7_2:84160760-84160779 None:intergenic 55.0%
ATCCCAGGGTACAGGTACAC+AGG - chr7_2:84161042-84161061 Msa1083840:intron 55.0%
TCCCAGGGTACAGGTACACA+GGG - chr7_2:84161043-84161062 Msa1083840:intron 55.0%
CGTGGACAGAGTGAACGTGA+AGG + chr7_2:84161971-84161990 None:intergenic 55.0%
CTCCCCATGTTGTACAGGTG+AGG - chr7_2:84162657-84162676 Msa1083840:CDS 55.0%
CAAGTGGCCACAGTTTGTGC+AGG + chr7_2:84163345-84163364 None:intergenic 55.0%
GGACTGCCTTGTAGAGAGAG+GGG + chr7_2:84163795-84163814 None:intergenic 55.0%
!! CCCCTGTTTTGGGCCCTGTT+TGG + chr7_2:84159848-84159867 None:intergenic 60.0%
GGAAGTCATGCGGTAGGACG+AGG + chr7_2:84160754-84160773 None:intergenic 60.0%
GGGAAATGCTAGCAGTGCCC+CGG - chr7_2:84160858-84160877 Msa1083840:intron 60.0%
GCCCCCTGTGGCACTCTTTA+AGG + chr7_2:84160994-84161013 None:intergenic 60.0%
TTGCTAACGAGTGCCCCCTG+TGG + chr7_2:84161006-84161025 None:intergenic 60.0%
GCCCTGTGTACCTGTACCCT+GGG + chr7_2:84161047-84161066 None:intergenic 60.0%
TGCCCTGTGTACCTGTACCC+TGG + chr7_2:84161048-84161067 None:intergenic 60.0%
GGTGGAGATACAGCGGACCA+CGG + chr7_2:84162004-84162023 None:intergenic 60.0%
TACAGCGGACCACGGAGGCA+GGG + chr7_2:84161996-84162015 None:intergenic 65.0%
ATACAGCGGACCACGGAGGC+AGG + chr7_2:84161997-84162016 None:intergenic 65.0%
GGAGATACAGCGGACCACGG+AGG + chr7_2:84162001-84162020 None:intergenic 65.0%
GTCCACGCTCCCTGCCTCCG+TGG - chr7_2:84161984-84162003 Msa1083840:intron 75.0%
GACCACGGAGGCAGGGAGCG+TGG + chr7_2:84161989-84162008 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 84158466 84164377 84158466 ID=Msa1083840;Name=Msa1083840
chr7_2 mRNA 84158466 84164377 84158466 ID=Msa1083840-mRNA-1;Parent=Msa1083840;Name=Msa1083840-mRNA-1;_AED=0.12;_eAED=0.12;_QI=20|0.88|0.9|1|1|1|10|533|403
chr7_2 exon 84158466 84159277 84158466 ID=Msa1083840-mRNA-1:exon:22385;Parent=Msa1083840-mRNA-1
chr7_2 exon 84159918 84160073 84159918 ID=Msa1083840-mRNA-1:exon:22384;Parent=Msa1083840-mRNA-1
chr7_2 exon 84160170 84160222 84160170 ID=Msa1083840-mRNA-1:exon:22383;Parent=Msa1083840-mRNA-1
chr7_2 exon 84160317 84160408 84160317 ID=Msa1083840-mRNA-1:exon:22382;Parent=Msa1083840-mRNA-1
chr7_2 exon 84162207 84162259 84162207 ID=Msa1083840-mRNA-1:exon:22381;Parent=Msa1083840-mRNA-1
chr7_2 exon 84162367 84162439 84162367 ID=Msa1083840-mRNA-1:exon:22380;Parent=Msa1083840-mRNA-1
chr7_2 exon 84162518 84162685 84162518 ID=Msa1083840-mRNA-1:exon:22379;Parent=Msa1083840-mRNA-1
chr7_2 exon 84162775 84162869 84162775 ID=Msa1083840-mRNA-1:exon:22378;Parent=Msa1083840-mRNA-1
chr7_2 exon 84164030 84164123 84164030 ID=Msa1083840-mRNA-1:exon:22377;Parent=Msa1083840-mRNA-1
chr7_2 exon 84164209 84164377 84164209 ID=Msa1083840-mRNA-1:exon:22376;Parent=Msa1083840-mRNA-1
chr7_2 five_prime_UTR 84164358 84164377 84164358 ID=Msa1083840-mRNA-1:five_prime_utr;Parent=Msa1083840-mRNA-1
chr7_2 CDS 84164209 84164357 84164209 ID=Msa1083840-mRNA-1:cds;Parent=Msa1083840-mRNA-1
chr7_2 CDS 84164030 84164123 84164030 ID=Msa1083840-mRNA-1:cds;Parent=Msa1083840-mRNA-1
chr7_2 CDS 84162775 84162869 84162775 ID=Msa1083840-mRNA-1:cds;Parent=Msa1083840-mRNA-1
chr7_2 CDS 84162518 84162685 84162518 ID=Msa1083840-mRNA-1:cds;Parent=Msa1083840-mRNA-1
chr7_2 CDS 84162367 84162439 84162367 ID=Msa1083840-mRNA-1:cds;Parent=Msa1083840-mRNA-1
chr7_2 CDS 84162207 84162259 84162207 ID=Msa1083840-mRNA-1:cds;Parent=Msa1083840-mRNA-1
chr7_2 CDS 84160317 84160408 84160317 ID=Msa1083840-mRNA-1:cds;Parent=Msa1083840-mRNA-1
chr7_2 CDS 84160170 84160222 84160170 ID=Msa1083840-mRNA-1:cds;Parent=Msa1083840-mRNA-1
chr7_2 CDS 84159918 84160073 84159918 ID=Msa1083840-mRNA-1:cds;Parent=Msa1083840-mRNA-1
chr7_2 CDS 84158999 84159277 84158999 ID=Msa1083840-mRNA-1:cds;Parent=Msa1083840-mRNA-1
chr7_2 three_prime_UTR 84158466 84158998 84158466 ID=Msa1083840-mRNA-1:three_prime_utr;Parent=Msa1083840-mRNA-1
Gene Sequence

>Msa1083840

ATGGGGGTAGGTTTGTTATTGGTATGCCATGGATTGGTGACAGCTTTGGTTGTGATCTCTTTCCTTTGCGGTCGGTGGCCAATTTTCGAAGGCACTTTCATTCAACGCATTCACTGTTTCCTCACTTTCGGCGCTTACGATTACTTCCTGCGTTTTGTTGGCGCTGTTTTTGGCTCCAAGTGTACCAATGCTGTTCTTTCTGTTGAATATTATTGCTGCGATCGTCCCAATCCTCTCTTACAGATCATATATCTTGTGATAATCAGCTTTACATATTATTTTGCCGTCAACTCTTCCTTTGCCTATATCCCTGGATACTATTTAAGTGCAACTCACAAGTACACAAGCTTCTTCGCAGCTGCTGTTGGAATTCTGCTCTTTCTTTTGACCAGCTTTACTGATCCTGGGACAATAAAGGCTGAGAATGTTTCTCAATATCTTGCTGCTTATCCTTATGATAATATCATTTTTTCAGAGAAAGAATGTTCCACTTGCAAAATTCCAAAACCTGCTAGATCAAAGCATTGCAGCATTTGTGATCGCTGTGTTGCACGATTTGACCATCACTGTGGATGGATGAATAATTGCATAGGGGAGAGAAACACTCGATATTTCATGGCTTTTCTTTTATGGCATTTCCTTCTATGTATGTATGGAACAGTTCTCATAGGTTTAATTCTCGCAGGAAGACTAAAAGAATTAAAAGTTGTCTATATTCTAACAGTTTATTATGGAATTGAAAATTCATTTTGGGATTTAGCTCCCCATGTTGTACAGTGGTTATTGGGATCCTACAACACTCAGATTCTTCTTATAGTTTTCGTTGCAATTGTTGGGATGCTGTTAGGCGGATTCTTCGGTTACCATGCAAAGCTTTGCCTTAGTAACACTACCACTAATGAGGTATTTTCTACATCTGGCCTTGAAATGACTACCTTCAAGTGGCAAGACTACATGGACTGGCAGAGAAAGTTAAAAGAAGCGCAGGCCAGTGCTGCAGCGCTAAAACAAAGTATCAGTGGAATGAACAGTGAAAAACAATTGTTGTCAAGCAACAAATGGAGAGCATTTTTTCGAAGATCACCTCTGGAGGATGTGGTAGTTGTTAAGAATAATGTTTACAATAAAGGTTTCTTGCACAATATTTGGGAGGTTATTTCCCCTCTCTCTACAAGGCAGTCCTTTACGAAAACAAAGTTGAAATCCAACTGA

Protein sequence

>Msa1083840

MGVGLLLVCHGLVTALVVISFLCGRWPIFEGTFIQRIHCFLTFGAYDYFLRFVGAVFGSKCTNAVLSVEYYCCDRPNPLLQIIYLVIISFTYYFAVNSSFAYIPGYYLSATHKYTSFFAAAVGILLFLLTSFTDPGTIKAENVSQYLAAYPYDNIIFSEKECSTCKIPKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYFMAFLLWHFLLCMYGTVLIGLILAGRLKELKVVYILTVYYGIENSFWDLAPHVVQWLLGSYNTQILLIVFVAIVGMLLGGFFGYHAKLCLSNTTTNEVFSTSGLEMTTFKWQDYMDWQRKLKEAQASAAALKQSISGMNSEKQLLSSNKWRAFFRRSPLEDVVVVKNNVYNKGFLHNIWEVISPLSTRQSFTKTKLKSN*