AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0381610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381610 MtrunA17_Chr3g0135651 97.814 183 3 1 45 227 29 210 1.09e-134 377
Msa0381610 MtrunA17_Chr7g0229341 47.059 153 79 2 67 217 7 159 1.61e-51 166
Msa0381610 MtrunA17_CPg0493361 47.059 153 79 2 67 217 7 159 4.61e-51 165
Msa0381610 MtrunA17_Chr4g0016411 47.059 153 79 2 67 217 7 159 4.61e-51 165
Msa0381610 MtrunA17_Chr7g0222091 38.816 152 71 2 67 217 7 137 3.34e-36 126
Msa0381610 MtrunA17_Chr4g0015251 52.632 76 35 1 143 217 2 77 1.32e-24 94.7
Msa0381610 MtrunA17_Chr7g0227431 42.708 96 53 2 67 161 7 101 4.36e-24 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381610 AT5G11770.1 95.570 158 7 0 70 227 61 218 5.65e-117 332
Msa0381610 ATCG00430.1 46.405 153 80 2 67 217 7 159 3.96e-50 163

Find 94 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTTCTGTTTGTTGTTTA+TGG -0.031413 3_1:+83838784 None:intergenic
TAGTGTAACATTGATTATTT+TGG 0.150032 3_1:-83833936 Msa0381610:three_prime_UTR
CCTGTTGATATTTATGTTCC+CGG 0.283336 3_1:-83834345 Msa0381610:CDS
ACCAAATGCCCGAGCCTAGA+TGG 0.309620 3_1:-83834452 Msa0381610:CDS
CCCATCTAGGCTCGGGCATT+TGG 0.315314 3_1:+83834451 None:intergenic
ACTTTATAATAAGCAATTCA+TGG 0.367407 3_1:-83834193 Msa0381610:three_prime_UTR
AGGTTGATAATCTCATGAAT+TGG 0.373372 3_1:-83838516 Msa0381610:CDS
AGGCGGTGGAGCGTAAGGGG+TGG 0.374478 3_1:+83838597 None:intergenic
GCTATGAATCACCCTTTGTT+TGG 0.380093 3_1:-83834158 Msa0381610:three_prime_UTR
AAGAGCGGGAGCCATCTTAT+TGG 0.382683 3_1:+83838333 None:intergenic
AGAGAGATGGAAGGGTTGTA+TGG 0.387527 3_1:+83838631 None:intergenic
TTCTGTTTGTTGTTTATGGA+TGG 0.391969 3_1:+83838788 None:intergenic
GGAGGAGGCGGTGGAGCGTA+AGG 0.398546 3_1:+83838592 None:intergenic
CTCAGCAGTTGGAGGGCAGC+CGG 0.406470 3_1:+83834326 None:intergenic
GTGGTCGATGGAGGAGGCGG+TGG 0.407856 3_1:+83838583 None:intergenic
TCAATCTGGCCTATGACTTT+CGG 0.408619 3_1:-83838481 Msa0381610:CDS
TCTGATTGTATGATTGTTGC+TGG 0.414093 3_1:-83838364 Msa0381610:CDS
TCAATGTTACACTATTAATC+TGG 0.418095 3_1:+83833945 None:intergenic
GAGGTGGTCGATGGAGGAGG+CGG 0.422742 3_1:+83838580 None:intergenic
CATCATTTCAACAGCACAAC+AGG 0.430335 3_1:+83838453 None:intergenic
TGATCTTCTTCTGCAGTTGG+AGG 0.439435 3_1:+83834286 None:intergenic
CACATAAAACATACAGAGTA+AGG 0.442964 3_1:+83834113 None:intergenic
GGTTGATAATCTCATGAATT+GGG 0.445690 3_1:-83838515 Msa0381610:CDS
AGGAGGCGGTGGAGCGTAAG+GGG 0.451460 3_1:+83838594 None:intergenic
GCCTAGATGGGTTGTCTCCA+TGG 0.454702 3_1:-83834439 Msa0381610:CDS
CGTTACGATCTGGATCGATT+TGG 0.459982 3_1:-83838415 Msa0381610:CDS
CAGGCGAGTCCGAAAGTCAT+AGG 0.465570 3_1:+83838472 None:intergenic
ACTGCTGAGGCTTTACTGTA+TGG 0.466993 3_1:-83834312 Msa0381610:CDS
TATTGATCTTCTTCTGCAGT+TGG 0.469979 3_1:+83834283 None:intergenic
GGCGGTGGAGCGTAAGGGGT+GGG 0.470168 3_1:+83838598 None:intergenic
GTTAATGCTTCTTATGTACC+TGG 0.471184 3_1:-83834040 Msa0381610:three_prime_UTR
GGTCGATTAAGTTTATCTCT+TGG 0.471614 3_1:-83834225 Msa0381610:three_prime_UTR
TGGTGCTGCTCGTTACGATC+TGG 0.473692 3_1:-83838425 Msa0381610:CDS
AACTGCAGAAGAAGATCAAT+AGG 0.480409 3_1:-83834281 Msa0381610:CDS
CTCATGAATTGGGCTCGTAC+TGG 0.482560 3_1:-83838505 Msa0381610:CDS
TTGCTTATTATAAAGTAGCT+TGG 0.484390 3_1:+83834200 None:intergenic
CCGGGAACATAAATATCAAC+AGG 0.485170 3_1:+83834345 None:intergenic
GGAGAGGTGGTCGATGGAGG+AGG 0.486052 3_1:+83838577 None:intergenic
TCCATGGGAAGTTGTGCTAA+TGG 0.486720 3_1:-83834423 Msa0381610:CDS
ATGAATCACCCTTTGTTTGG+TGG 0.496345 3_1:-83834155 Msa0381610:three_prime_UTR
CAATCAGATTGACGAGGACT+AGG 0.496509 3_1:+83838379 None:intergenic
GCCGTCTTCGATATTCCAAC+GGG 0.500071 3_1:+83838556 None:intergenic
GGGCTCGTACTGGCTCAATC+TGG 0.503571 3_1:-83838495 Msa0381610:CDS
CCCATGGAGACAACCCATCT+AGG 0.504105 3_1:+83834438 None:intergenic
GAAACATACTTGCGAAGAGC+GGG 0.507595 3_1:+83838319 None:intergenic
TCAGCAGTTGGAGGGCAGCC+GGG 0.508884 3_1:+83834327 None:intergenic
CAGAATATCCACCAAACAAA+GGG 0.511142 3_1:+83834147 None:intergenic
CTTCGATATTCCAACGGGAG+AGG 0.515451 3_1:+83838561 None:intergenic
TACAGTAAAGCCTCAGCAGT+TGG 0.522747 3_1:+83834315 None:intergenic
CCATCGACCACCTCTCCCGT+TGG 0.528192 3_1:-83838571 Msa0381610:CDS
GAGGAGGCGGTGGAGCGTAA+GGG 0.528912 3_1:+83838593 None:intergenic
TGAGTGGTTTGTTTAATCCC+AGG 0.531284 3_1:+83834022 None:intergenic
CCAAATGCCCGAGCCTAGAT+GGG 0.537493 3_1:-83834451 Msa0381610:CDS
GAGACAACCCATCTAGGCTC+GGG 0.544154 3_1:+83834444 None:intergenic
CCTAGATGGGTTGTCTCCAT+GGG 0.544839 3_1:-83834438 Msa0381610:CDS
CGGCTGCCCTCCAACTGCTG+AGG 0.547600 3_1:-83834325 Msa0381610:CDS
ACGGGAGAGGTGGTCGATGG+AGG 0.553280 3_1:+83838574 None:intergenic
TCCATTAGCACAACTTCCCA+TGG 0.554029 3_1:+83834422 None:intergenic
TTAATGCTTCTTATGTACCT+GGG 0.557163 3_1:-83834039 Msa0381610:three_prime_UTR
AAGAAGAACGAGGGGAAGAA+CGG 0.557431 3_1:-83838748 Msa0381610:intron
ACAAAGGGTGATTCATAGCA+AGG 0.558007 3_1:+83834162 None:intergenic
GGAAGTTGTGCTAATGGAGG+AGG 0.559773 3_1:-83834417 Msa0381610:CDS
CGATATTCCAACGGGAGAGG+TGG 0.560126 3_1:+83838564 None:intergenic
GGAGACAACCCATCTAGGCT+CGG 0.561380 3_1:+83834443 None:intergenic
TGGTACTCTTACCAATAAGA+TGG 0.563740 3_1:-83838344 Msa0381610:CDS
TTAATCTGGAGTAAGAGAGA+TGG 0.563947 3_1:+83833959 None:intergenic
CGCCGTCTTCGATATTCCAA+CGG 0.565051 3_1:+83838555 None:intergenic
CTGTTGTCCGAGGATGTGAC+AGG 0.567271 3_1:-83834374 Msa0381610:CDS
GGCGCAAGGACTTCCTCCAT+TGG 0.568783 3_1:-83834260 Msa0381610:CDS
AGAAACATACTTGCGAAGAG+CGG 0.569989 3_1:+83838318 None:intergenic
GAACGATCCTGTCACATCCT+CGG 0.578017 3_1:+83834367 None:intergenic
ATCCATAAACAACAAACAGA+AGG 0.587191 3_1:-83838786 Msa0381610:CDS
GCAAGGACTTCCTCCATTGG+TGG 0.590384 3_1:-83834257 Msa0381610:CDS
CTCACTGAGTCCACCAATGG+AGG 0.591840 3_1:+83834247 None:intergenic
GGGTGTGTTGATGAGAGAGA+TGG 0.592278 3_1:+83838618 None:intergenic
GTAAAGCCTCAGCAGTTGGA+GGG 0.606304 3_1:+83834319 None:intergenic
ACAGAATATCCACCAAACAA+AGG 0.607833 3_1:+83834146 None:intergenic
GCTGTTGAAATGATGCATAC+TGG 0.608176 3_1:-83838445 Msa0381610:CDS
AGTAAAGCCTCAGCAGTTGG+AGG 0.610038 3_1:+83834318 None:intergenic
CATAAACAACAAACAGAAGG+AGG 0.610565 3_1:-83838783 Msa0381610:CDS
GACCTCACTGAGTCCACCAA+TGG 0.613212 3_1:+83834244 None:intergenic
TACTCTTACTCTGTTGTCCG+AGG 0.620931 3_1:-83834384 Msa0381610:CDS
CCAACGGGAGAGGTGGTCGA+TGG 0.621156 3_1:+83838571 None:intergenic
GAAGAAGATCAATAGGCGCA+AGG 0.632047 3_1:-83834274 Msa0381610:CDS
TCCCGTTGGAATATCGAAGA+CGG 0.641180 3_1:-83838557 Msa0381610:CDS
CTCCATTGGTGGACTCAGTG+AGG 0.646971 3_1:-83834246 Msa0381610:exon
TGTTGATGAGAGAGATGGAA+GGG 0.649688 3_1:+83838623 None:intergenic
ATGGGAAGTTGTGCTAATGG+AGG 0.660590 3_1:-83834420 Msa0381610:CDS
ACGTATGAGTCAAACATGAG+TGG 0.672071 3_1:+83834006 None:intergenic
GGACAACAGAGTAAGAGTAG+TGG 0.675431 3_1:+83834388 None:intergenic
GTGTTGATGAGAGAGATGGA+AGG 0.676000 3_1:+83838622 None:intergenic
GGCGGAGTACGTGATCTCGA+AGG 0.687555 3_1:-83838536 Msa0381610:CDS
CGTTGGAATATCGAAGACGG+CGG 0.718228 3_1:-83838554 Msa0381610:CDS
ATCATACAATCAGATTGACG+AGG 0.742801 3_1:+83838373 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAATAAATGGATTTTTA+TGG + chr3_1:83837069-83837088 None:intergenic 10.0%
!!! AACTCATTTTTTAAAATAAA+TGG + chr3_1:83837079-83837098 None:intergenic 10.0%
!! GAAAGAATAATTTATAAATT+TGG - chr3_1:83838055-83838074 Msa0381610:intron 10.0%
!! AAAATGACATAAAAGTTATA+TGG - chr3_1:83835969-83835988 Msa0381610:intron 15.0%
!! TTTATGCTATTAATTACTAT+AGG - chr3_1:83836262-83836281 Msa0381610:intron 15.0%
!! ACTATCAATATATTATTACT+TGG - chr3_1:83836305-83836324 Msa0381610:intron 15.0%
!!! TGAAAAAAGTGATTTTTTTA+AGG - chr3_1:83837243-83837262 Msa0381610:intron 15.0%
!!! GGAAAAAAATAGATTTTTTT+TGG - chr3_1:83837264-83837283 Msa0381610:intron 15.0%
!! ATATATTGATAGATAAAGAT+GGG + chr3_1:83837808-83837827 None:intergenic 15.0%
!! TCATAAAAACTTACTATTAA+AGG + chr3_1:83837989-83838008 None:intergenic 15.0%
!!! TAAGTTTTTATGAAAATTTG+TGG - chr3_1:83837996-83838015 Msa0381610:intron 15.0%
!! AAGCAAATTAAAATTAAAGA+CGG + chr3_1:83838207-83838226 None:intergenic 15.0%
!! AGAATGTGAAAATTTAACAA+AGG - chr3_1:83834581-83834600 Msa0381610:intron 20.0%
!! GAATGTGAAAATTTAACAAA+GGG - chr3_1:83834582-83834601 Msa0381610:intron 20.0%
!! AATGTGAAAATTTAACAAAG+GGG - chr3_1:83834583-83834602 Msa0381610:intron 20.0%
!!! AAGTTAAATTGTTTTTGTAC+AGG + chr3_1:83834858-83834877 None:intergenic 20.0%
!!! TATCTTTAAGTTTTTCTGTT+TGG + chr3_1:83835606-83835625 None:intergenic 20.0%
!!! TTTTTTTTTTCTGTAACAAC+TGG + chr3_1:83835857-83835876 None:intergenic 20.0%
!! TCTAACAATATATCATTACT+TGG - chr3_1:83836014-83836033 Msa0381610:intron 20.0%
!! TTTAGTCTCATAAATAAAGA+GGG + chr3_1:83836187-83836206 None:intergenic 20.0%
!!! TTTTAGTCTCATAAATAAAG+AGG + chr3_1:83836188-83836207 None:intergenic 20.0%
!! ATTGACTATTATCTTATCAT+AGG - chr3_1:83836797-83836816 Msa0381610:intron 20.0%
!! GGAAGATTTCATTAATAAAA+TGG + chr3_1:83836885-83836904 None:intergenic 20.0%
!!! ATCTATTTTTTTCAACAACA+AGG + chr3_1:83837124-83837143 None:intergenic 20.0%
!!! ATCTAAAATGAAAAGCTATT+AGG + chr3_1:83837163-83837182 None:intergenic 20.0%
!!! CAATTTGGTATTTTGATAAT+GGG + chr3_1:83837311-83837330 None:intergenic 20.0%
!!! TCAATTTGGTATTTTGATAA+TGG + chr3_1:83837312-83837331 None:intergenic 20.0%
!! AATGTGAAACAATATAAATG+GGG + chr3_1:83837419-83837438 None:intergenic 20.0%
!! CAATGTGAAACAATATAAAT+GGG + chr3_1:83837420-83837439 None:intergenic 20.0%
!! AAAAAGGAAAATTAGTATCA+TGG + chr3_1:83837743-83837762 None:intergenic 20.0%
!!! TGATACTAATTTTCCTTTTT+TGG - chr3_1:83837743-83837762 Msa0381610:intron 20.0%
!! GATATATTGATAGATAAAGA+TGG + chr3_1:83837809-83837828 None:intergenic 20.0%
!!! TGAATTTGTTTTTAATCACT+TGG - chr3_1:83837889-83837908 Msa0381610:intron 20.0%
!!! GAATTTGTTTTTAATCACTT+GGG - chr3_1:83837890-83837909 Msa0381610:intron 20.0%
!! ATCCCTCTTATATTAAAATT+TGG - chr3_1:83837925-83837944 Msa0381610:intron 20.0%
!! TCCCTCTTATATTAAAATTT+GGG - chr3_1:83837926-83837945 Msa0381610:intron 20.0%
!!! TCCCAAATTTTAATATAAGA+GGG + chr3_1:83837930-83837949 None:intergenic 20.0%
!!! TTCCCAAATTTTAATATAAG+AGG + chr3_1:83837931-83837950 None:intergenic 20.0%
!! AAATTGTATAGACAGAATAA+TGG + chr3_1:83838145-83838164 None:intergenic 20.0%
!! ACTTTATAATAAGCAATTCA+TGG - chr3_1:83838561-83838580 Msa0381610:CDS 20.0%
!!! TAGTGTAACATTGATTATTT+TGG - chr3_1:83838818-83838837 Msa0381610:CDS 20.0%
!!! TAACATTGATTATTTTGGAA+TGG - chr3_1:83838823-83838842 Msa0381610:CDS 20.0%
!!! AACATTGATTATTTTGGAAT+GGG - chr3_1:83838824-83838843 Msa0381610:CDS 20.0%
! ACAAATCAATGCTTCTATAA+GGG + chr3_1:83834525-83834544 None:intergenic 25.0%
! AACAAATCAATGCTTCTATA+AGG + chr3_1:83834526-83834545 None:intergenic 25.0%
! ATGTGAAAATTTAACAAAGG+GGG - chr3_1:83834584-83834603 Msa0381610:intron 25.0%
! TTAAATTGCTCTCTTGATTT+AGG - chr3_1:83834647-83834666 Msa0381610:intron 25.0%
! AATTTAGCGCTTATTGTATA+AGG - chr3_1:83834691-83834710 Msa0381610:intron 25.0%
! ATTTAGCGCTTATTGTATAA+GGG - chr3_1:83834692-83834711 Msa0381610:intron 25.0%
!!! ACAACTTTCATTTTAGTTGT+TGG + chr3_1:83834969-83834988 None:intergenic 25.0%
! AAACACTCGTAAAACTAATT+GGG + chr3_1:83835077-83835096 None:intergenic 25.0%
! ACGTTCAAATTCAATTGAAA+TGG + chr3_1:83835725-83835744 None:intergenic 25.0%
! TGTCTACAAAAATGTTCAAT+TGG - chr3_1:83835829-83835848 Msa0381610:intron 25.0%
! GTCTACAAAAATGTTCAATT+GGG - chr3_1:83835830-83835849 Msa0381610:intron 25.0%
! ATTCTGCTAGTAATTACTAT+AGG - chr3_1:83835907-83835926 Msa0381610:intron 25.0%
! AGATAGTTCAAATTCAACAA+AGG - chr3_1:83836102-83836121 Msa0381610:intron 25.0%
!! AGGGTTTTCAAATTCAAAAA+AGG - chr3_1:83836397-83836416 Msa0381610:intron 25.0%
!! GTTTTCAAATTCAAAAAAGG+TGG - chr3_1:83836400-83836419 Msa0381610:intron 25.0%
! AAGACCTAACTAAATTAAGA+GGG + chr3_1:83836483-83836502 None:intergenic 25.0%
! TAACTTATGAAAACAACTTG+TGG + chr3_1:83836633-83836652 None:intergenic 25.0%
!!! GTTGTTTTCATAAGTTATCA+TGG - chr3_1:83836636-83836655 Msa0381610:intron 25.0%
! GCTTAGTATCAAACAATATT+GGG - chr3_1:83836935-83836954 Msa0381610:intron 25.0%
!!! TCATTTTTGAGTGTTTGTTT+AGG + chr3_1:83837226-83837245 None:intergenic 25.0%
! GCAATGTGAAACAATATAAA+TGG + chr3_1:83837421-83837440 None:intergenic 25.0%
! TGACTTAAGTGTGTATTATT+GGG + chr3_1:83837485-83837504 None:intergenic 25.0%
! ATGACTTAAGTGTGTATTAT+TGG + chr3_1:83837486-83837505 None:intergenic 25.0%
! ATAATACACACTTAAGTCAT+TGG - chr3_1:83837486-83837505 Msa0381610:intron 25.0%
! TAATACACACTTAAGTCATT+GGG - chr3_1:83837487-83837506 Msa0381610:intron 25.0%
!!! ACTAATTTTCCTTTTTTGGA+AGG - chr3_1:83837747-83837766 Msa0381610:intron 25.0%
!!! CATTTTTTTCCTTCCAAAAA+AGG + chr3_1:83837759-83837778 None:intergenic 25.0%
!! TTTTTAATCACTTGGGATTT+GGG - chr3_1:83837897-83837916 Msa0381610:intron 25.0%
! AATTTGTGGATTTAATGCAT+TGG - chr3_1:83838010-83838029 Msa0381610:intron 25.0%
! TAAAATTAAAGACGGAATGA+TGG + chr3_1:83838199-83838218 None:intergenic 25.0%
!!! TTTAATTTGCTTCTTAGACT+TGG - chr3_1:83838215-83838234 Msa0381610:intron 25.0%
! TTGCTTATTATAAAGTAGCT+TGG + chr3_1:83838557-83838576 None:intergenic 25.0%
! TCAATGTTACACTATTAATC+TGG + chr3_1:83838812-83838831 None:intergenic 25.0%
!! TTCTGTTTGTTGTTTATGGA+TGG + chr3_1:83833969-83833988 None:intergenic 30.0%
ATCCATAAACAACAAACAGA+AGG - chr3_1:83833968-83833987 Msa0381610:three_prime_UTR 30.0%
!! AGGTTGATAATCTCATGAAT+TGG - chr3_1:83834238-83834257 Msa0381610:exon 30.0%
!! GGTTGATAATCTCATGAATT+GGG - chr3_1:83834239-83834258 Msa0381610:exon 30.0%
! TTTCTTTTCCCTCTTTTCTA+GGG - chr3_1:83834454-83834473 Msa0381610:CDS 30.0%
TGTAAAAACCCTAGAAAAGA+GGG + chr3_1:83834465-83834484 None:intergenic 30.0%
ATGTAAAAACCCTAGAAAAG+AGG + chr3_1:83834466-83834485 None:intergenic 30.0%
TGGATAAACAGTTTATTTGC+AGG + chr3_1:83834949-83834968 None:intergenic 30.0%
AATAAGCTGAAAACAGCTTA+TGG - chr3_1:83835019-83835038 Msa0381610:intron 30.0%
CAAACACTCGTAAAACTAAT+TGG + chr3_1:83835078-83835097 None:intergenic 30.0%
GAGAATTGAGCTTATCTATT+GGG + chr3_1:83835107-83835126 None:intergenic 30.0%
TGAGAATTGAGCTTATCTAT+TGG + chr3_1:83835108-83835127 None:intergenic 30.0%
!! CGCTTTTAGGAATATTATGA+CGG + chr3_1:83835200-83835219 None:intergenic 30.0%
!! TAAAGGATTCTAGGATTCTA+TGG + chr3_1:83835480-83835499 None:intergenic 30.0%
TGTGTACTTGCAAAAAAGTA+CGG + chr3_1:83835503-83835522 None:intergenic 30.0%
!! GCTTATCTTTGGTATTTTGA+AGG + chr3_1:83835582-83835601 None:intergenic 30.0%
TATGACTTAAACTAGGAAGA+AGG + chr3_1:83835650-83835669 None:intergenic 30.0%
TTCTTCCTAGTTTAAGTCAT+AGG - chr3_1:83835649-83835668 Msa0381610:intron 30.0%
TCTTCCTAGTTTAAGTCATA+GGG - chr3_1:83835650-83835669 Msa0381610:intron 30.0%
! AAGTTACAGAGTCTTATATG+TGG + chr3_1:83836340-83836359 None:intergenic 30.0%
TTCTTTATCTGCAATCATGA+AGG - chr3_1:83836377-83836396 Msa0381610:intron 30.0%
TCTTTATCTGCAATCATGAA+GGG - chr3_1:83836378-83836397 Msa0381610:intron 30.0%
AATGCCCTCTTAATTTAGTT+AGG - chr3_1:83836476-83836495 Msa0381610:intron 30.0%
CAAGACCTAACTAAATTAAG+AGG + chr3_1:83836484-83836503 None:intergenic 30.0%
AAGTTATCATGGAGAAGTTA+TGG - chr3_1:83836647-83836666 Msa0381610:intron 30.0%
ATTGCACGATAAAATCAAGT+GGG + chr3_1:83836755-83836774 None:intergenic 30.0%
AATTGCACGATAAAATCAAG+TGG + chr3_1:83836756-83836775 None:intergenic 30.0%
CTTCAATATATTATGCCTGT+AGG - chr3_1:83836823-83836842 Msa0381610:intron 30.0%
GGCTTAGTATCAAACAATAT+TGG - chr3_1:83836934-83836953 Msa0381610:intron 30.0%
! GGAAAAAATCTGAAACAAAC+AGG - chr3_1:83837285-83837304 Msa0381610:intron 30.0%
AATACACACTTAAGTCATTG+GGG - chr3_1:83837488-83837507 Msa0381610:intron 30.0%
AACATTAAGAGTCCTATAAG+TGG + chr3_1:83837850-83837869 None:intergenic 30.0%
! GTTTTTAATCACTTGGGATT+TGG - chr3_1:83837896-83837915 Msa0381610:intron 30.0%
CACATAAAACATACAGAGTA+AGG + chr3_1:83838644-83838663 None:intergenic 30.0%
! CTTACTCTGTATGTTTTATG+TGG - chr3_1:83838642-83838661 Msa0381610:intron 30.0%
! ATGTTTTATGTGGAGCTTTT+TGG - chr3_1:83838652-83838671 Msa0381610:intron 30.0%
! TGTTTTATGTGGAGCTTTTT+GGG - chr3_1:83838653-83838672 Msa0381610:intron 30.0%
TTAATGCTTCTTATGTACCT+GGG - chr3_1:83838715-83838734 Msa0381610:intron 30.0%
!!! ACAGCGAAACTGTTTTTGTT+AGG + chr3_1:83833938-83833957 None:intergenic 35.0%
!! CTCCTTCTGTTTGTTGTTTA+TGG + chr3_1:83833973-83833992 None:intergenic 35.0%
CATAAACAACAAACAGAAGG+AGG - chr3_1:83833971-83833990 Msa0381610:three_prime_UTR 35.0%
AAGAAGAAGAAGAAGAACGA+GGG - chr3_1:83833997-83834016 Msa0381610:three_prime_UTR 35.0%
ATCATACAATCAGATTGACG+AGG + chr3_1:83834384-83834403 None:intergenic 35.0%
TCTGATTGTATGATTGTTGC+TGG - chr3_1:83834390-83834409 Msa0381610:CDS 35.0%
TGGTACTCTTACCAATAAGA+TGG - chr3_1:83834410-83834429 Msa0381610:CDS 35.0%
! GTTTCTTTTCCCTCTTTTCT+AGG - chr3_1:83834453-83834472 Msa0381610:CDS 35.0%
!! TAAGTTTTGTGCGACTGTTT+AGG - chr3_1:83834738-83834757 Msa0381610:intron 35.0%
GTAAAACTAATTGGGATACG+AGG + chr3_1:83835069-83835088 None:intergenic 35.0%
! CTTCTAGAAGTTTAGTAAGG+CGG + chr3_1:83835316-83835335 None:intergenic 35.0%
! AGGCTTCTAGAAGTTTAGTA+AGG + chr3_1:83835319-83835338 None:intergenic 35.0%
!!! TGTGTATTTTGGGGCTTTTT+GGG + chr3_1:83835352-83835371 None:intergenic 35.0%
!!! TTGTGTATTTTGGGGCTTTT+TGG + chr3_1:83835353-83835372 None:intergenic 35.0%
!!! AGGGGTATTTGTGTATTTTG+GGG + chr3_1:83835361-83835380 None:intergenic 35.0%
!!! CAGGGGTATTTGTGTATTTT+GGG + chr3_1:83835362-83835381 None:intergenic 35.0%
!!! ACAGGGGTATTTGTGTATTT+TGG + chr3_1:83835363-83835382 None:intergenic 35.0%
!! GATTCTAGGATTCTATGGTT+TGG + chr3_1:83835475-83835494 None:intergenic 35.0%
AAAGTACGGTAAAGGATTCT+AGG + chr3_1:83835489-83835508 None:intergenic 35.0%
! CTTGCAAAAAAGTACGGTAA+AGG + chr3_1:83835497-83835516 None:intergenic 35.0%
!! TTCTGTTTGGTGCTTATCTT+TGG + chr3_1:83835593-83835612 None:intergenic 35.0%
CTTCCTAGTTTAAGTCATAG+GGG - chr3_1:83835651-83835670 Msa0381610:intron 35.0%
ATCATCTCACGTTTAATGTG+AGG - chr3_1:83835784-83835803 Msa0381610:intron 35.0%
TCATCTCACGTTTAATGTGA+GGG - chr3_1:83835785-83835804 Msa0381610:intron 35.0%
! AAGTTACAGAGCCTTATATG+TGG + chr3_1:83836049-83836068 None:intergenic 35.0%
TAAAATCAAGTGGGCAATCA+AGG + chr3_1:83836746-83836765 None:intergenic 35.0%
! TGCTTCTGGAAGAATCAATT+TGG + chr3_1:83837326-83837345 None:intergenic 35.0%
! AAATTGATTCTTCCAGAAGC+AGG - chr3_1:83837325-83837344 Msa0381610:intron 35.0%
! GGAAAAGAGAATGAGTTTTG+GGG + chr3_1:83837398-83837417 None:intergenic 35.0%
! GGGAAAAGAGAATGAGTTTT+GGG + chr3_1:83837399-83837418 None:intergenic 35.0%
AAGGGAATTAGAAGCTCATA+CGG + chr3_1:83837447-83837466 None:intergenic 35.0%
ATTTGAATGTCACTGCATGT+CGG - chr3_1:83837569-83837588 Msa0381610:intron 35.0%
!! TCTCTACGAAAGTGTTCAAT+TGG - chr3_1:83837661-83837680 Msa0381610:intron 35.0%
!! CTCTACGAAAGTGTTCAATT+GGG - chr3_1:83837662-83837681 Msa0381610:intron 35.0%
ATTGATAGATAAAGATGGGC+AGG + chr3_1:83837804-83837823 None:intergenic 35.0%
CAGATTACTGTTCCACTTAT+AGG - chr3_1:83837835-83837854 Msa0381610:intron 35.0%
! TGTATGTTTAGCTGGCTTAA+TGG + chr3_1:83838242-83838261 None:intergenic 35.0%
TTGAGAACTGTATGTTTAGC+TGG + chr3_1:83838250-83838269 None:intergenic 35.0%
AATGCTGACAAATCATTGCA+GGG - chr3_1:83838273-83838292 Msa0381610:intron 35.0%
CCTGTTGATATTTATGTTCC+CGG - chr3_1:83838409-83838428 Msa0381610:CDS 35.0%
TATTGATCTTCTTCTGCAGT+TGG + chr3_1:83838474-83838493 None:intergenic 35.0%
AACTGCAGAAGAAGATCAAT+AGG - chr3_1:83838473-83838492 Msa0381610:CDS 35.0%
GGTCGATTAAGTTTATCTCT+TGG - chr3_1:83838529-83838548 Msa0381610:CDS 35.0%
CAGAATATCCACCAAACAAA+GGG + chr3_1:83838610-83838629 None:intergenic 35.0%
ACAGAATATCCACCAAACAA+AGG + chr3_1:83838611-83838630 None:intergenic 35.0%
! GTTTTATGTGGAGCTTTTTG+GGG - chr3_1:83838654-83838673 Msa0381610:intron 35.0%
! TTTTATGTGGAGCTTTTTGG+GGG - chr3_1:83838655-83838674 Msa0381610:intron 35.0%
!! TTTTGGGGGCTTAAAATCTT+TGG - chr3_1:83838669-83838688 Msa0381610:intron 35.0%
GTTAATGCTTCTTATGTACC+TGG - chr3_1:83838714-83838733 Msa0381610:intron 35.0%
! TTAATCTGGAGTAAGAGAGA+TGG + chr3_1:83838798-83838817 None:intergenic 35.0%
GAAGAAGAAGAAGAAGAACG+AGG - chr3_1:83833996-83834015 Msa0381610:three_prime_UTR 40.0%
AGAAGAAGAAGAAGAACGAG+GGG - chr3_1:83833998-83834017 Msa0381610:three_prime_UTR 40.0%
! TGTTGATGAGAGAGATGGAA+GGG + chr3_1:83834134-83834153 None:intergenic 40.0%
TCAATCTGGCCTATGACTTT+CGG - chr3_1:83834273-83834292 Msa0381610:CDS 40.0%
CATCATTTCAACAGCACAAC+AGG + chr3_1:83834304-83834323 None:intergenic 40.0%
GCTGTTGAAATGATGCATAC+TGG - chr3_1:83834309-83834328 Msa0381610:CDS 40.0%
AGAAACATACTTGCGAAGAG+CGG + chr3_1:83834439-83834458 None:intergenic 40.0%
CTCTTGATTTAGGCTCTGTT+TGG - chr3_1:83834657-83834676 Msa0381610:intron 40.0%
AGTCGCACAAAACTTATGAC+AGG + chr3_1:83834734-83834753 None:intergenic 40.0%
TTGCATAAGCTATCCTGAAG+AGG - chr3_1:83834989-83835008 Msa0381610:intron 40.0%
CTTATTTCCACAACCTCTTC+AGG + chr3_1:83835005-83835024 None:intergenic 40.0%
CTTATGGACATGTCATGAGT+TGG - chr3_1:83835035-83835054 Msa0381610:intron 40.0%
!! TAGAAACCTTTTGGAGGTCT+TGG + chr3_1:83835244-83835263 None:intergenic 40.0%
! GTGTACTAGAAACCTTTTGG+AGG + chr3_1:83835250-83835269 None:intergenic 40.0%
! GAGGTGTACTAGAAACCTTT+TGG + chr3_1:83835253-83835272 None:intergenic 40.0%
TGGTATTTATAGCCCGCTAT+GGG + chr3_1:83835416-83835435 None:intergenic 40.0%
! CTATGGTTTGGACTGATGAT+TGG + chr3_1:83835463-83835482 None:intergenic 40.0%
ACAGTATATTCTGCGACACT+AGG - chr3_1:83835532-83835551 Msa0381610:intron 40.0%
ATTCTGCGACACTAGGAAAA+AGG - chr3_1:83835539-83835558 Msa0381610:intron 40.0%
CAACCCCTATGACTTAAACT+AGG + chr3_1:83835657-83835676 None:intergenic 40.0%
CTAGTTTAAGTCATAGGGGT+TGG - chr3_1:83835655-83835674 Msa0381610:intron 40.0%
TTGTCACTGCATGTTAGAAG+AGG - chr3_1:83835744-83835763 Msa0381610:intron 40.0%
CATCTCACGTTTAATGTGAG+GGG - chr3_1:83835786-83835805 Msa0381610:intron 40.0%
! TCGGGTTATTTGAGTTTAGC+TGG + chr3_1:83836712-83836731 None:intergenic 40.0%
TCAAATAACCCGATCCAAAC+AGG - chr3_1:83836719-83836738 Msa0381610:intron 40.0%
AATCAAGGACCTGTTTGGAT+CGG + chr3_1:83836731-83836750 None:intergenic 40.0%
CTGTAGGAGACTAATAGCTA+GGG - chr3_1:83836839-83836858 Msa0381610:intron 40.0%
CAGCTGCAGAAGAATCAATT+TGG + chr3_1:83836906-83836925 None:intergenic 40.0%
!!! TCTTCTGCAGCTGTTGATTT+TGG - chr3_1:83836913-83836932 Msa0381610:intron 40.0%
ATTGCAATAACCTGCACACT+TGG + chr3_1:83837364-83837383 None:intergenic 40.0%
! GGGGAAAAGAGAATGAGTTT+TGG + chr3_1:83837400-83837419 None:intergenic 40.0%
AGGGAATTAGAAGCTCATAC+GGG + chr3_1:83837446-83837465 None:intergenic 40.0%
AGCTTCTAATTCCCTTCTAC+AGG - chr3_1:83837451-83837470 Msa0381610:intron 40.0%
AAGATGGGCAGGATAAAGTT+TGG + chr3_1:83837793-83837812 None:intergenic 40.0%
!! GACGGAATGATGGATAAACA+AGG + chr3_1:83838189-83838208 None:intergenic 40.0%
GAATGCTGACAAATCATTGC+AGG - chr3_1:83838272-83838291 Msa0381610:intron 40.0%
CCGGGAACATAAATATCAAC+AGG + chr3_1:83838412-83838431 None:intergenic 40.0%
ACAAAGGGTGATTCATAGCA+AGG + chr3_1:83838595-83838614 None:intergenic 40.0%
GCTATGAATCACCCTTTGTT+TGG - chr3_1:83838596-83838615 Msa0381610:CDS 40.0%
! ATGAATCACCCTTTGTTTGG+TGG - chr3_1:83838599-83838618 Msa0381610:CDS 40.0%
!! TGAGTGGTTTGTTTAATCCC+AGG + chr3_1:83838735-83838754 None:intergenic 40.0%
ACGTATGAGTCAAACATGAG+TGG + chr3_1:83838751-83838770 None:intergenic 40.0%
!!! ACTGTTTTTGTTAGGCGACG+TGG + chr3_1:83833930-83833949 None:intergenic 45.0%
AAGAAGAACGAGGGGAAGAA+CGG - chr3_1:83834006-83834025 Msa0381610:three_prime_UTR 45.0%
AGAGAGATGGAAGGGTTGTA+TGG + chr3_1:83834126-83834145 None:intergenic 45.0%
! GTGTTGATGAGAGAGATGGA+AGG + chr3_1:83834135-83834154 None:intergenic 45.0%
TCCCGTTGGAATATCGAAGA+CGG - chr3_1:83834197-83834216 Msa0381610:three_prime_UTR 45.0%
CGTTACGATCTGGATCGATT+TGG - chr3_1:83834339-83834358 Msa0381610:CDS 45.0%
CAATCAGATTGACGAGGACT+AGG + chr3_1:83834378-83834397 None:intergenic 45.0%
GAAACATACTTGCGAAGAGC+GGG + chr3_1:83834438-83834457 None:intergenic 45.0%
! GTTTTGTGCGACTGTTTAGG+AGG - chr3_1:83834741-83834760 Msa0381610:intron 45.0%
AAGCTATCCTGAAGAGGTTG+TGG - chr3_1:83834995-83835014 Msa0381610:intron 45.0%
! TGGAGGGCTTATACGCTTTT+AGG + chr3_1:83835213-83835232 None:intergenic 45.0%
!! GTTTCTAGTACACCTCCAGA+GGG - chr3_1:83835257-83835276 Msa0381610:intron 45.0%
!!! GTATTTTGGGGCTTTTTGGG+CGG + chr3_1:83835349-83835368 None:intergenic 45.0%
ACACAAATACCCCTGTTGCT+TGG - chr3_1:83835367-83835386 Msa0381610:intron 45.0%
TGCTTGGTTTCCAAGCAACA+GGG + chr3_1:83835380-83835399 None:intergenic 45.0%
TTGCTTGGTTTCCAAGCAAC+AGG + chr3_1:83835381-83835400 None:intergenic 45.0%
GTGGTATTTATAGCCCGCTA+TGG + chr3_1:83835417-83835436 None:intergenic 45.0%
AGCACGTAGAGAAGACTATC+TGG + chr3_1:83835684-83835703 None:intergenic 45.0%
GATAGTCTTCTCTACGTGCT+CGG - chr3_1:83835684-83835703 Msa0381610:intron 45.0%
TGTTAGAAGAGGTTCGTACG+TGG - chr3_1:83835755-83835774 Msa0381610:intron 45.0%
GGATTGCTGCTCCACATATA+AGG - chr3_1:83836035-83836054 Msa0381610:intron 45.0%
ATCAAGGACCTGTTTGGATC+GGG + chr3_1:83836730-83836749 None:intergenic 45.0%
! CCTAGCTATTAGTCTCCTAC+AGG + chr3_1:83836841-83836860 None:intergenic 45.0%
CCTGTAGGAGACTAATAGCT+AGG - chr3_1:83836838-83836857 Msa0381610:intron 45.0%
AGGTAAATGGAACCTGCTTC+TGG + chr3_1:83837340-83837359 None:intergenic 45.0%
GAATTAGAAGCTCATACGGG+CGG + chr3_1:83837443-83837462 None:intergenic 45.0%
GGGAAGAAAGACCTGTAGAA+GGG + chr3_1:83837465-83837484 None:intergenic 45.0%
TGGGAAGAAAGACCTGTAGA+AGG + chr3_1:83837466-83837485 None:intergenic 45.0%
CACACTTAAGTCATTGGGGT+TGG - chr3_1:83837492-83837511 Msa0381610:intron 45.0%
TGTCTCACACCTGAATGTGA+AGG - chr3_1:83837617-83837636 Msa0381610:intron 45.0%
GTCTCACACCTGAATGTGAA+GGG - chr3_1:83837618-83837637 Msa0381610:intron 45.0%
ACTTCACACCCTTCACATTC+AGG + chr3_1:83837629-83837648 None:intergenic 45.0%
!! AAGGCCCTTAAAGAGTGTTC+CGG + chr3_1:83837970-83837989 None:intergenic 45.0%
TCCATGGGAAGTTGTGCTAA+TGG - chr3_1:83838331-83838350 Msa0381610:CDS 45.0%
TCCATTAGCACAACTTCCCA+TGG + chr3_1:83838335-83838354 None:intergenic 45.0%
ATGGGAAGTTGTGCTAATGG+AGG - chr3_1:83838334-83838353 Msa0381610:CDS 45.0%
GGACAACAGAGTAAGAGTAG+TGG + chr3_1:83838369-83838388 None:intergenic 45.0%
TACTCTTACTCTGTTGTCCG+AGG - chr3_1:83838370-83838389 Msa0381610:CDS 45.0%
TACAGTAAAGCCTCAGCAGT+TGG + chr3_1:83838442-83838461 None:intergenic 45.0%
ACTGCTGAGGCTTTACTGTA+TGG - chr3_1:83838442-83838461 Msa0381610:CDS 45.0%
TGATCTTCTTCTGCAGTTGG+AGG + chr3_1:83838471-83838490 None:intergenic 45.0%
GAAGAAGATCAATAGGCGCA+AGG - chr3_1:83838480-83838499 Msa0381610:CDS 45.0%
!! AAAGAATAATTTATAAATTT+GGG - chr3_1:83838056-83838075 Msa0381610:intron 5.0%
ATCAACGCAACGAACCACCA+TGG - chr3_1:83834033-83834052 Msa0381610:three_prime_UTR 50.0%
AGTTAGAAATGCCGCCATGG+TGG + chr3_1:83834050-83834069 None:intergenic 50.0%
TCGAGTTAGAAATGCCGCCA+TGG + chr3_1:83834053-83834072 None:intergenic 50.0%
! GGGTGTGTTGATGAGAGAGA+TGG + chr3_1:83834139-83834158 None:intergenic 50.0%
CTTCGATATTCCAACGGGAG+AGG + chr3_1:83834196-83834215 None:intergenic 50.0%
GCCGTCTTCGATATTCCAAC+GGG + chr3_1:83834201-83834220 None:intergenic 50.0%
CGCCGTCTTCGATATTCCAA+CGG + chr3_1:83834202-83834221 None:intergenic 50.0%
CGTTGGAATATCGAAGACGG+CGG - chr3_1:83834200-83834219 Msa0381610:three_prime_UTR 50.0%
CTCATGAATTGGGCTCGTAC+TGG - chr3_1:83834249-83834268 Msa0381610:CDS 50.0%
AAGAGCGGGAGCCATCTTAT+TGG + chr3_1:83834424-83834443 None:intergenic 50.0%
CGACTGTTTAGGAGGACTTG+TGG - chr3_1:83834749-83834768 Msa0381610:intron 50.0%
AGCGTATAAGCCCTCCAGAA+AGG - chr3_1:83835216-83835235 Msa0381610:intron 50.0%
AAGGCTCCAAGACCTCCAAA+AGG - chr3_1:83835235-83835254 Msa0381610:intron 50.0%
!! GGTTTCTAGTACACCTCCAG+AGG - chr3_1:83835256-83835275 Msa0381610:intron 50.0%
TAGTAAGGCGGCACCTCAAA+GGG + chr3_1:83835304-83835323 None:intergenic 50.0%
TTAGTAAGGCGGCACCTCAA+AGG + chr3_1:83835305-83835324 None:intergenic 50.0%
!! GCTTTTTGGGCGGTTTCTAG+AGG + chr3_1:83835339-83835358 None:intergenic 50.0%
GCTTGGTTTCCAAGCAACAG+GGG + chr3_1:83835379-83835398 None:intergenic 50.0%
TTATAGCCCGCTATGGGCTT+GGG + chr3_1:83835410-83835429 None:intergenic 50.0%
TTTATAGCCCGCTATGGGCT+TGG + chr3_1:83835411-83835430 None:intergenic 50.0%
!! CTTGAGAGTGCTCTCAAGAG+TGG + chr3_1:83835436-83835455 None:intergenic 50.0%
!! CACTCTTGAGAGCACTCTCA+AGG - chr3_1:83835434-83835453 Msa0381610:intron 50.0%
TACGTGCTCGGATGTTGTTC+TGG - chr3_1:83835696-83835715 Msa0381610:intron 50.0%
TGGGCAATCAAGGACCTGTT+TGG + chr3_1:83836736-83836755 None:intergenic 50.0%
CTGCACACTTGGCAGGTAAA+TGG + chr3_1:83837353-83837372 None:intergenic 50.0%
CATTTACCTGCCAAGTGTGC+AGG - chr3_1:83837351-83837370 Msa0381610:intron 50.0%
CAATAACCTGCACACTTGGC+AGG + chr3_1:83837360-83837379 None:intergenic 50.0%
TGAATGTCACTGCATGTCGG+AGG - chr3_1:83837572-83837591 Msa0381610:intron 50.0%
TGTCGGAGGAGGTTCATATG+TGG - chr3_1:83837586-83837605 Msa0381610:intron 50.0%
AATCACTTGGGATTTGGGCG+TGG - chr3_1:83837902-83837921 Msa0381610:intron 50.0%
!! AGGCCCTTAAAGAGTGTTCC+GGG + chr3_1:83837969-83837988 None:intergenic 50.0%
!! CCTAGATGGGTTGTCTCCAT+GGG - chr3_1:83838316-83838335 Msa0381610:intron 50.0%
GGAAGTTGTGCTAATGGAGG+AGG - chr3_1:83838337-83838356 Msa0381610:CDS 50.0%
GAACGATCCTGTCACATCCT+CGG + chr3_1:83838390-83838409 None:intergenic 50.0%
GTAAAGCCTCAGCAGTTGGA+GGG + chr3_1:83838438-83838457 None:intergenic 50.0%
AGTAAAGCCTCAGCAGTTGG+AGG + chr3_1:83838439-83838458 None:intergenic 50.0%
AACGCAACGAACCACCATGG+CGG - chr3_1:83834036-83834055 Msa0381610:three_prime_UTR 55.0%
! TGGAGAGACGCTAAGCGTTG+TGG + chr3_1:83834106-83834125 None:intergenic 55.0%
CGATATTCCAACGGGAGAGG+TGG + chr3_1:83834193-83834212 None:intergenic 55.0%
CAGGCGAGTCCGAAAGTCAT+AGG + chr3_1:83834285-83834304 None:intergenic 55.0%
!! TGGTGCTGCTCGTTACGATC+TGG - chr3_1:83834329-83834348 Msa0381610:CDS 55.0%
GGTCTTGGAGCCTTTCTGGA+GGG + chr3_1:83835229-83835248 None:intergenic 55.0%
AGGTCTTGGAGCCTTTCTGG+AGG + chr3_1:83835230-83835249 None:intergenic 55.0%
TGGAGGTCTTGGAGCCTTTC+TGG + chr3_1:83835233-83835252 None:intergenic 55.0%
GGGCTTATGAATCCCTCTGG+AGG + chr3_1:83835272-83835291 None:intergenic 55.0%
CCAGGGCTTATGAATCCCTC+TGG + chr3_1:83835275-83835294 None:intergenic 55.0%
CCAGAGGGATTCATAAGCCC+TGG - chr3_1:83835272-83835291 Msa0381610:intron 55.0%
ACCAAAGCCCAAGCCCATAG+CGG - chr3_1:83835400-83835419 Msa0381610:intron 55.0%
ATGTCACTGCATGTCGGAGG+AGG - chr3_1:83837575-83837594 Msa0381610:intron 55.0%
GAAATGCTAACACGTGCCCC+CGG - chr3_1:83837948-83837967 Msa0381610:intron 55.0%
TGCCCCCGGAACACTCTTTA+AGG - chr3_1:83837962-83837981 Msa0381610:intron 55.0%
GCCCCCGGAACACTCTTTAA+GGG - chr3_1:83837963-83837982 Msa0381610:intron 55.0%
!! GCCCTTAAAGAGTGTTCCGG+GGG + chr3_1:83837967-83837986 None:intergenic 55.0%
!! GGCCCTTAAAGAGTGTTCCG+GGG + chr3_1:83837968-83837987 None:intergenic 55.0%
!! GGATCCTTAAAGAGTGCCCC+CGG - chr3_1:83838077-83838096 Msa0381610:intron 55.0%
!! GATCCTTAAAGAGTGCCCCC+GGG - chr3_1:83838078-83838097 Msa0381610:intron 55.0%
!! ATCCTTAAAGAGTGCCCCCG+GGG - chr3_1:83838079-83838098 Msa0381610:intron 55.0%
AGTCTTGCTAACGAGTGCCC+CGG + chr3_1:83838099-83838118 None:intergenic 55.0%
ACCAAATGCCCGAGCCTAGA+TGG - chr3_1:83838302-83838321 Msa0381610:intron 55.0%
CCAAATGCCCGAGCCTAGAT+GGG - chr3_1:83838303-83838322 Msa0381610:intron 55.0%
GAGACAACCCATCTAGGCTC+GGG + chr3_1:83838313-83838332 None:intergenic 55.0%
GGAGACAACCCATCTAGGCT+CGG + chr3_1:83838314-83838333 None:intergenic 55.0%
!! GCCTAGATGGGTTGTCTCCA+TGG - chr3_1:83838315-83838334 Msa0381610:intron 55.0%
CCCATGGAGACAACCCATCT+AGG + chr3_1:83838319-83838338 None:intergenic 55.0%
CTGTTGTCCGAGGATGTGAC+AGG - chr3_1:83838380-83838399 Msa0381610:CDS 55.0%
GCAAGGACTTCCTCCATTGG+TGG - chr3_1:83838497-83838516 Msa0381610:CDS 55.0%
CTCACTGAGTCCACCAATGG+AGG + chr3_1:83838510-83838529 None:intergenic 55.0%
!! CTCCATTGGTGGACTCAGTG+AGG - chr3_1:83838508-83838527 Msa0381610:CDS 55.0%
GACCTCACTGAGTCCACCAA+TGG + chr3_1:83838513-83838532 None:intergenic 55.0%
GGCGGAGTACGTGATCTCGA+AGG - chr3_1:83834218-83834237 Msa0381610:three_prime_UTR 60.0%
!! GGGCTCGTACTGGCTCAATC+TGG - chr3_1:83834259-83834278 Msa0381610:CDS 60.0%
! GGGCTTGGGCTTTGGTTGCT+TGG + chr3_1:83835396-83835415 None:intergenic 60.0%
CCAAAGCCCAAGCCCATAGC+GGG - chr3_1:83835401-83835420 Msa0381610:intron 60.0%
TCTTGCTAACGAGTGCCCCG+GGG + chr3_1:83838097-83838116 None:intergenic 60.0%
GTCTTGCTAACGAGTGCCCC+GGG + chr3_1:83838098-83838117 None:intergenic 60.0%
CCCATCTAGGCTCGGGCATT+TGG + chr3_1:83838306-83838325 None:intergenic 60.0%
GGCGCAAGGACTTCCTCCAT+TGG - chr3_1:83838494-83838513 Msa0381610:CDS 60.0%
AGGAGGCGGTGGAGCGTAAG+GGG + chr3_1:83834163-83834182 None:intergenic 65.0%
GAGGAGGCGGTGGAGCGTAA+GGG + chr3_1:83834164-83834183 None:intergenic 65.0%
GAGGTGGTCGATGGAGGAGG+CGG + chr3_1:83834177-83834196 None:intergenic 65.0%
GGAGAGGTGGTCGATGGAGG+AGG + chr3_1:83834180-83834199 None:intergenic 65.0%
ACGGGAGAGGTGGTCGATGG+AGG + chr3_1:83834183-83834202 None:intergenic 65.0%
CCAACGGGAGAGGTGGTCGA+TGG + chr3_1:83834186-83834205 None:intergenic 65.0%
CCATCGACCACCTCTCCCGT+TGG - chr3_1:83834183-83834202 Msa0381610:three_prime_UTR 65.0%
! ACCTCAAAGGGAGCGCGCCA+GGG + chr3_1:83835292-83835311 None:intergenic 65.0%
CCCGCTATGGGCTTGGGCTT+TGG + chr3_1:83835404-83835423 None:intergenic 65.0%
!! TGCCCCGGGGGCACTCTTTA+AGG + chr3_1:83838084-83838103 None:intergenic 65.0%
CTTGCTAACGAGTGCCCCGG+GGG + chr3_1:83838096-83838115 None:intergenic 65.0%
TCAGCAGTTGGAGGGCAGCC+GGG + chr3_1:83838430-83838449 None:intergenic 65.0%
CTCAGCAGTTGGAGGGCAGC+CGG + chr3_1:83838431-83838450 None:intergenic 65.0%
GGCGGTGGAGCGTAAGGGGT+GGG + chr3_1:83834159-83834178 None:intergenic 70.0%
AGGCGGTGGAGCGTAAGGGG+TGG + chr3_1:83834160-83834179 None:intergenic 70.0%
GGAGGAGGCGGTGGAGCGTA+AGG + chr3_1:83834165-83834184 None:intergenic 70.0%
GTGGTCGATGGAGGAGGCGG+TGG + chr3_1:83834174-83834193 None:intergenic 70.0%
! CACCTCAAAGGGAGCGCGCC+AGG + chr3_1:83835293-83835312 None:intergenic 70.0%
CGGCTGCCCTCCAACTGCTG+AGG - chr3_1:83838429-83838448 Msa0381610:CDS 70.0%
GCCCTGGCGCGCTCCCTTTG+AGG - chr3_1:83835288-83835307 Msa0381610:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 83833912 83838864 83833912 ID=Msa0381610;Name=Msa0381610
chr3_1 mRNA 83833912 83838864 83833912 ID=Msa0381610-mRNA-1;Parent=Msa0381610;Name=Msa0381610-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.33|1|1|1|3|336|227
chr3_1 exon 83833912 83834482 83833912 ID=Msa0381610-mRNA-1:exon:21689;Parent=Msa0381610-mRNA-1
chr3_1 exon 83838328 83838660 83838328 ID=Msa0381610-mRNA-1:exon:21688;Parent=Msa0381610-mRNA-1
chr3_1 exon 83838749 83838864 83838749 ID=Msa0381610-mRNA-1:exon:21687;Parent=Msa0381610-mRNA-1
chr3_1 CDS 83838749 83838864 83838749 ID=Msa0381610-mRNA-1:cds;Parent=Msa0381610-mRNA-1
chr3_1 CDS 83838328 83838660 83838328 ID=Msa0381610-mRNA-1:cds;Parent=Msa0381610-mRNA-1
chr3_1 CDS 83834248 83834482 83834248 ID=Msa0381610-mRNA-1:cds;Parent=Msa0381610-mRNA-1
chr3_1 three_prime_UTR 83833912 83834247 83833912 ID=Msa0381610-mRNA-1:three_prime_utr;Parent=Msa0381610-mRNA-1
Gene Sequence

>Msa0381610

ATGGTGCACGGTGCACCACGTCGCCTAACAAAAACAGTTTCGCTGTTGTATTCTCCATCCATAAACAACAAACAGAAGGAGGAAGAAGAAGAAGAAGAAGAACGAGGGGAAGAACGCGTCTCTCCATACAACCCTTCCATCTCTCTCATCAACACACCCACCCCTTACGCTCCACCGCCTCCTCCATCGACCACCTCTCCCGTTGGAATATCGAAGACGGCGGAGTACGTGATCTCGAAGGTTGATAATCTCATGAATTGGGCTCGTACTGGCTCAATCTGGCCTATGACTTTCGGACTCGCCTGTTGTGCTGTTGAAATGATGCATACTGGTGCTGCTCGTTACGATCTGGATCGATTTGGTATCATTTTTCGACCTAGTCCTCGTCAATCTGATTGTATGATTGTTGCTGGTACTCTTACCAATAAGATGGCTCCCGCTCTTCGCAAGGTGTATGACCAAATGCCCGAGCCTAGATGGGTTGTCTCCATGGGAAGTTGTGCTAATGGAGGAGGATACTACCACTACTCTTACTCTGTTGTCCGAGGATGTGACAGGATCGTTCCTGTTGATATTTATGTTCCCGGCTGCCCTCCAACTGCTGAGGCTTTACTGTATGGACTCCTCCAACTGCAGAAGAAGATCAATAGGCGCAAGGACTTCCTCCATTGGTGGACTCAGTGA

Protein sequence

>Msa0381610

MVHGAPRRLTKTVSLLYSPSINNKQKEEEEEEEERGEERVSPYNPSISLINTPTPYAPPPPPSTTSPVGISKTAEYVISKVDNLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLHWWTQ*