Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027630 | XP_013468491.1 | 100.000 | 157 | 0 | 0 | 1 | 157 | 1 | 157 | 3.71e-110 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027630 | sp|Q5ZIX3|EAF6_CHICK | 44.444 | 90 | 48 | 1 | 16 | 103 | 21 | 110 | 1.14e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027630 | Msa0103240 | 0.815638 | 8.343023e-52 | -8.615850e-47 |
| Msa0027630 | Msa0166460 | 0.806331 | 8.665257e-50 | -8.615850e-47 |
| Msa0027630 | Msa0167820 | 0.812866 | 3.417099e-51 | -8.615850e-47 |
| Msa0027630 | Msa0423750 | 0.835420 | 1.695210e-56 | -8.615850e-47 |
| Msa0027630 | Msa0470530 | 0.818861 | 1.571373e-52 | -8.615850e-47 |
| Msa0027630 | Msa0706500 | 0.808462 | 3.061085e-50 | -8.615850e-47 |
| Msa0027630 | Msa0808800 | 0.824050 | 9.956524e-54 | -8.615850e-47 |
| Msa0027630 | Msa1131170 | 0.807230 | 5.594629e-50 | -8.615850e-47 |
| Msa0027630 | Msa1438050 | 0.804783 | 1.830268e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027630 | MtrunA17_Chr1g0183901 | 100.000 | 157 | 0 | 0 | 1 | 157 | 1 | 157 | 3.42e-114 | 320 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027630 | AT4G14385.1 | 68.056 | 144 | 40 | 2 | 3 | 143 | 2 | 142 | 2.09e-57 | 177 |
| Msa0027630 | AT4G14385.2 | 72.807 | 114 | 31 | 0 | 3 | 116 | 2 | 115 | 9.41e-51 | 159 |
| Msa0027630 | AT4G14385.5 | 72.000 | 100 | 28 | 0 | 3 | 102 | 2 | 101 | 2.88e-41 | 134 |
| Msa0027630 | AT4G14385.9 | 72.000 | 100 | 28 | 0 | 3 | 102 | 2 | 101 | 2.88e-41 | 134 |
| Msa0027630 | AT4G14385.6 | 71.739 | 92 | 26 | 0 | 3 | 94 | 2 | 93 | 6.88e-36 | 121 |
| Msa0027630 | AT4G14385.7 | 71.739 | 92 | 26 | 0 | 3 | 94 | 2 | 93 | 6.88e-36 | 121 |
| Msa0027630 | AT4G14385.4 | 71.739 | 92 | 26 | 0 | 3 | 94 | 2 | 93 | 6.88e-36 | 121 |
| Msa0027630 | AT4G14385.8 | 71.739 | 92 | 26 | 0 | 3 | 94 | 2 | 93 | 6.88e-36 | 121 |
| Msa0027630 | AT4G14385.3 | 71.739 | 92 | 26 | 0 | 3 | 94 | 2 | 93 | 6.88e-36 | 121 |
Find 54 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATCGTTCCTTGAAAA+TGG | 0.219889 | 1_1:-52021286 | Msa0027630:exon |
| TCCTCATTCTATGTATATAT+TGG | 0.258578 | 1_1:-52018496 | Msa0027630:three_prime_UTR |
| GTCTGAAACAGAGTAAAATT+TGG | 0.278525 | 1_1:-52021340 | Msa0027630:five_prime_UTR |
| TATGGAAACAAGTTATTTAC+AGG | 0.281655 | 1_1:-52020647 | Msa0027630:CDS |
| CTCGACACAGGTTTATGATA+TGG | 0.290750 | 1_1:-52020665 | Msa0027630:intron |
| ACGAAGCTCTTCATGAAGTT+TGG | 0.303537 | 1_1:+52021101 | None:intergenic |
| CTTGCTCTCTTCGCATCTCT+TGG | 0.327976 | 1_1:+52018671 | None:intergenic |
| ACAGTGTGGCAATGTATTAA+AGG | 0.345831 | 1_1:-52020617 | Msa0027630:CDS |
| GGCGCACCTCTTCCTTTCTT+CGG | 0.350577 | 1_1:+52018692 | None:intergenic |
| TCAGATGGGAGATCAGATTT+TGG | 0.357334 | 1_1:-52018907 | Msa0027630:intron |
| TCTGAAACAGAGTAAAATTT+GGG | 0.361347 | 1_1:-52021339 | Msa0027630:five_prime_UTR |
| GGTGGAACAATTTATGCAAA+TGG | 0.372296 | 1_1:-52018868 | Msa0027630:CDS |
| GAACGATTTGATTGAGGATT+CGG | 0.389452 | 1_1:+52021297 | None:intergenic |
| AATGTATTAAAGGGATTTGA+AGG | 0.395885 | 1_1:-52020607 | Msa0027630:CDS |
| AAGTTGATGTTTACAGTTTG+CGG | 0.409602 | 1_1:-52018325 | Msa0027630:three_prime_UTR |
| TAATGAAAAGAGCCTGTCTT+CGG | 0.428840 | 1_1:+52019880 | None:intergenic |
| TTTCCAAGGTAGTGGTACTC+TGG | 0.439938 | 1_1:+52018288 | None:intergenic |
| TTTGGTCCTGGTCGATCAAA+AGG | 0.448086 | 1_1:-52018889 | Msa0027630:CDS |
| GATCAAACTTAGTTCTGTAC+AGG | 0.449061 | 1_1:+52018360 | None:intergenic |
| AATGAAAAGAGCCTGTCTTC+GGG | 0.452201 | 1_1:+52019881 | None:intergenic |
| TTCAATCACAATGTCATGTC+AGG | 0.452440 | 1_1:+52018611 | None:intergenic |
| GTAGAAAATCCACGACTACT+AGG | 0.457915 | 1_1:+52018471 | None:intergenic |
| CAGTGTGGCAATGTATTAAA+GGG | 0.460090 | 1_1:-52020616 | Msa0027630:CDS |
| TTCAAGGAACGATTTGATTG+AGG | 0.473788 | 1_1:+52021291 | None:intergenic |
| ACAAGTTATTTACAGGATCC+TGG | 0.477906 | 1_1:-52020640 | Msa0027630:CDS |
| GTGGAACAATTTATGCAAAT+GGG | 0.480539 | 1_1:-52018867 | Msa0027630:CDS |
| GCTTCGTAATATTGAAAAGC+AGG | 0.480561 | 1_1:-52021085 | Msa0027630:intron |
| CAAGAGATGCGAAGAGAGCA+AGG | 0.508415 | 1_1:-52018670 | Msa0027630:CDS |
| AATACATTGCCACACTGTCC+AGG | 0.510409 | 1_1:+52020622 | None:intergenic |
| TAGGCAGAAGAGCTTGCAGC+TGG | 0.517903 | 1_1:-52019019 | Msa0027630:CDS |
| GAAAGTTTCAGCCCGAAGAC+AGG | 0.522864 | 1_1:-52019892 | Msa0027630:CDS |
| ACCAATGGCCTATCTAATGC+AGG | 0.527926 | 1_1:+52018529 | None:intergenic |
| GGTGAACCCTTCAGCAATGT+TGG | 0.540152 | 1_1:-52021145 | Msa0027630:CDS |
| CAGTGTTCTTTGTTGACGAT+AGG | 0.542807 | 1_1:+52020581 | None:intergenic |
| TTTGGCTCTTCTACTAAGCA+AGG | 0.544435 | 1_1:+52021119 | None:intergenic |
| TATAGGGGTAAACCGAAGAA+AGG | 0.552151 | 1_1:-52018704 | Msa0027630:intron |
| AAACATCAACTTCTACAAGT+TGG | 0.554678 | 1_1:+52018336 | None:intergenic |
| ACCTGCATTAGATAGGCCAT+TGG | 0.559678 | 1_1:-52018530 | Msa0027630:three_prime_UTR |
| GAGCTTGCAGCTGGACGAGA+CGG | 0.560192 | 1_1:-52019010 | Msa0027630:intron |
| GCCAATATATACATAGAATG+AGG | 0.561937 | 1_1:+52018495 | None:intergenic |
| GAGGAATTGCAGAGAACCAA+TGG | 0.564055 | 1_1:+52018514 | None:intergenic |
| AAGGAAGCCAACATTGCTGA+AGG | 0.567280 | 1_1:+52021138 | None:intergenic |
| AATCCAGAGTACCACTACCT+TGG | 0.581131 | 1_1:-52018291 | Msa0027630:three_prime_UTR |
| TCAGAAACACACCGCTGGCG+AGG | 0.588747 | 1_1:+52019847 | None:intergenic |
| ATGTATTAAAGGGATTTGAA+GGG | 0.608853 | 1_1:-52020606 | Msa0027630:CDS |
| ATATTGGCTCCTAGTAGTCG+TGG | 0.609190 | 1_1:-52018480 | Msa0027630:three_prime_UTR |
| GACATTGTGATTGAACATGC+TGG | 0.614238 | 1_1:-52018603 | Msa0027630:exon |
| GGTAAACCGAAGAAAGGAAG+AGG | 0.619973 | 1_1:-52018698 | Msa0027630:CDS |
| ATCTTCAGTGACCTCGCCAG+CGG | 0.629189 | 1_1:-52019858 | Msa0027630:intron |
| GGTCCTGGTCGATCAAAAGG+TGG | 0.634647 | 1_1:-52018886 | Msa0027630:CDS |
| AAGAGATGCGAAGAGAGCAA+GGG | 0.657814 | 1_1:-52018669 | Msa0027630:CDS |
| AGGAAGCCAACATTGCTGAA+GGG | 0.663989 | 1_1:+52021139 | None:intergenic |
| TTACAGGATCCTGGACAGTG+TGG | 0.680227 | 1_1:-52020631 | Msa0027630:CDS |
| TCCTTGAAAATGGAATCCGA+AGG | 0.698033 | 1_1:-52021276 | Msa0027630:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTATATTAATTTTT+AGG | - | chr1_1:52018371-52018390 | Msa0027630:three_prime_UTR | 0.0% |
| !!! | AATTATTTTGAATTTTCATT+TGG | - | chr1_1:52018564-52018583 | Msa0027630:three_prime_UTR | 10.0% |
| !!! | ATTATTTTGAATTTTCATTT+GGG | - | chr1_1:52018565-52018584 | Msa0027630:three_prime_UTR | 10.0% |
| !!! | AATAACTATATATTTTTACA+TGG | + | chr1_1:52019522-52019541 | None:intergenic | 10.0% |
| !!! | ATTCTTTTGTAATTTCAATT+TGG | - | chr1_1:52018332-52018351 | Msa0027630:three_prime_UTR | 15.0% |
| !! | AATACAATTTAACCTTAAAT+TGG | - | chr1_1:52018814-52018833 | Msa0027630:intron | 15.0% |
| !! | ATACAATTTAACCTTAAATT+GGG | - | chr1_1:52018815-52018834 | Msa0027630:intron | 15.0% |
| !! | AATCACAAATCATATTTATT+AGG | - | chr1_1:52019232-52019251 | Msa0027630:intron | 15.0% |
| !!! | TGAATCTATTTTTTTTTTGT+TGG | - | chr1_1:52019619-52019638 | Msa0027630:intron | 15.0% |
| !!! | ATATCTTTTTATCTAATTCT+GGG | + | chr1_1:52019750-52019769 | None:intergenic | 15.0% |
| !!! | TATATCTTTTTATCTAATTC+TGG | + | chr1_1:52019751-52019770 | None:intergenic | 15.0% |
| !! | GTCATTATTAGAAATAATTA+TGG | - | chr1_1:52020325-52020344 | Msa0027630:intron | 15.0% |
| !!! | TAACTTTATTGTTTTTGAAT+TGG | - | chr1_1:52020732-52020751 | Msa0027630:intron | 15.0% |
| !!! | GATTAAATTTTCAATGCAAT+AGG | - | chr1_1:52018779-52018798 | Msa0027630:intron | 20.0% |
| !! | CCATAAATGAATAAAAATCA+TGG | + | chr1_1:52019274-52019293 | None:intergenic | 20.0% |
| !!! | CCATGATTTTTATTCATTTA+TGG | - | chr1_1:52019271-52019290 | Msa0027630:intron | 20.0% |
| !!! | ATTTTTATTCATTTATGGTC+AGG | - | chr1_1:52019276-52019295 | Msa0027630:intron | 20.0% |
| !!! | AATCTTACTAAGATTTTAGA+TGG | - | chr1_1:52019395-52019414 | Msa0027630:intron | 20.0% |
| !! | GTGTTTGAATTAATAAGAAA+AGG | - | chr1_1:52019427-52019446 | Msa0027630:intron | 20.0% |
| !!! | TGTTTCAAATGGATTAAAAT+TGG | + | chr1_1:52020014-52020033 | None:intergenic | 20.0% |
| !!! | AATTTTAATCCATTTGAAAC+AGG | - | chr1_1:52020013-52020032 | Msa0027630:intron | 20.0% |
| !! | TGCGGTTATTAATTTATATT+TGG | + | chr1_1:52020060-52020079 | None:intergenic | 20.0% |
| !!! | AGTTTTAGCAAATATAAATC+TGG | + | chr1_1:52020256-52020275 | None:intergenic | 20.0% |
| !!! | TTATATTTGCTAAAACTTAG+AGG | - | chr1_1:52020259-52020278 | Msa0027630:intron | 20.0% |
| !! | TAAACAGAATTGACAATAAA+AGG | + | chr1_1:52020429-52020448 | None:intergenic | 20.0% |
| !! | AAAAATCATCATGTTACTAT+AGG | - | chr1_1:52020830-52020849 | Msa0027630:intron | 20.0% |
| !! | AAAATCATCATGTTACTATA+GGG | - | chr1_1:52020831-52020850 | Msa0027630:intron | 20.0% |
| !!! | AAATGTTTTTTTTCTTTCCA+AGG | + | chr1_1:52021280-52021299 | None:intergenic | 20.0% |
| !!! | TAGAACATTTTCACTTTATT+GGG | + | chr1_1:52021304-52021323 | None:intergenic | 20.0% |
| !!! | ATAGAACATTTTCACTTTAT+TGG | + | chr1_1:52021305-52021324 | None:intergenic | 20.0% |
| !! | TCTGAAACAGAGTAAAATTT+GGG | - | chr1_1:52018212-52018231 | Msa0027630:three_prime_UTR | 25.0% |
| !!! | AGAGTAAAATTTGGGATTTT+AGG | - | chr1_1:52018220-52018239 | Msa0027630:three_prime_UTR | 25.0% |
| !!! | GAGTAAAATTTGGGATTTTA+GGG | - | chr1_1:52018221-52018240 | Msa0027630:three_prime_UTR | 25.0% |
| ! | CGAAAAGTAACATGAATTAA+GGG | + | chr1_1:52018307-52018326 | None:intergenic | 25.0% |
| ! | TCGAAAAGTAACATGAATTA+AGG | + | chr1_1:52018308-52018327 | None:intergenic | 25.0% |
| !!! | ATTTTTAGGTCAAAAAAGTG+CGG | - | chr1_1:52018385-52018404 | Msa0027630:three_prime_UTR | 25.0% |
| !!! | ACTTTTTCAATTTTAGCTTC+TGG | - | chr1_1:52018491-52018510 | Msa0027630:three_prime_UTR | 25.0% |
| !!! | CTTTTTCAATTTTAGCTTCT+GGG | - | chr1_1:52018492-52018511 | Msa0027630:three_prime_UTR | 25.0% |
| ! | TTTCAATGCAATAGGATAAT+TGG | - | chr1_1:52018787-52018806 | Msa0027630:intron | 25.0% |
| ! | TTCAATGCAATAGGATAATT+GGG | - | chr1_1:52018788-52018807 | Msa0027630:intron | 25.0% |
| ! | TATGGAAACAAGTTATTTAC+AGG | - | chr1_1:52018904-52018923 | Msa0027630:CDS | 25.0% |
| ! | AATGTATTAAAGGGATTTGA+AGG | - | chr1_1:52018944-52018963 | Msa0027630:intron | 25.0% |
| ! | ATGTATTAAAGGGATTTGAA+GGG | - | chr1_1:52018945-52018964 | Msa0027630:intron | 25.0% |
| ! | AATCATATTTATTAGGCATC+TGG | - | chr1_1:52019239-52019258 | Msa0027630:intron | 25.0% |
| !!! | TAGCACGTTAATTTTTTACT+AGG | - | chr1_1:52019924-52019943 | Msa0027630:intron | 25.0% |
| ! | CATATGATATAATTGAGTCT+AGG | + | chr1_1:52020097-52020116 | None:intergenic | 25.0% |
| !! | AAAGCATTTAATTTCTCAAC+CGG | + | chr1_1:52020201-52020220 | None:intergenic | 25.0% |
| ! | AATTAAATGCTTTACATGAG+TGG | - | chr1_1:52020208-52020227 | Msa0027630:intron | 25.0% |
| !! | TGTTTTATCAACATGAAACT+TGG | + | chr1_1:52020365-52020384 | None:intergenic | 25.0% |
| ! | TTGACAATAAAAGGCTTAAA+AGG | + | chr1_1:52020420-52020439 | None:intergenic | 25.0% |
| ! | TTGTCAATTCTGTTTAATCA+TGG | - | chr1_1:52020433-52020452 | Msa0027630:intron | 25.0% |
| !! | GATCTTCATCTTTTTATTGT+AGG | - | chr1_1:52020513-52020532 | Msa0027630:intron | 25.0% |
| ! | GAAGTCATTGAAATGTTTAT+AGG | + | chr1_1:52020573-52020592 | None:intergenic | 25.0% |
| ! | ATATTTCCATTTATCTCAGA+TGG | - | chr1_1:52020629-52020648 | Msa0027630:CDS | 25.0% |
| ! | TATTTCCATTTATCTCAGAT+GGG | - | chr1_1:52020630-52020649 | Msa0027630:CDS | 25.0% |
| ! | TACATATTTGACATGATTTG+CGG | + | chr1_1:52020787-52020806 | None:intergenic | 25.0% |
| ! | AAATCATCATGTTACTATAG+GGG | - | chr1_1:52020832-52020851 | Msa0027630:intron | 25.0% |
| ! | TCCTCATTCTATGTATATAT+TGG | - | chr1_1:52021055-52021074 | Msa0027630:intron | 25.0% |
| ! | CTTTGTGCAACATAAAAAAT+TGG | - | chr1_1:52021119-52021138 | Msa0027630:CDS | 25.0% |
| !! | TATCTAATCATTTTCACAAG+TGG | + | chr1_1:52021340-52021359 | None:intergenic | 25.0% |
| ! | GTCTGAAACAGAGTAAAATT+TGG | - | chr1_1:52018211-52018230 | Msa0027630:three_prime_UTR | 30.0% |
| ATCAAATCGTTCCTTGAAAA+TGG | - | chr1_1:52018265-52018284 | Msa0027630:three_prime_UTR | 30.0% | |
| GAATTAAGGGTTATTACCTT+CGG | + | chr1_1:52018294-52018313 | None:intergenic | 30.0% | |
| AATCCAGTATAGTCAAAGAA+TGG | + | chr1_1:52018520-52018539 | None:intergenic | 30.0% | |
| ATGTACATTTCTATGAAGCA+CGG | - | chr1_1:52018639-52018658 | Msa0027630:CDS | 30.0% | |
| GATACTCAAAACTACAGATT+CGG | + | chr1_1:52019159-52019178 | None:intergenic | 30.0% | |
| ATATTTATTAGGCATCTGGT+CGG | - | chr1_1:52019243-52019262 | Msa0027630:intron | 30.0% | |
| TAACAAAACAGAATGCATGA+AGG | + | chr1_1:52019577-52019596 | None:intergenic | 30.0% | |
| !! | TGTTTCTGATTTTCAGTGAT+AGG | - | chr1_1:52019718-52019737 | Msa0027630:intron | 30.0% |
| ! | TCTTTTTATCTAATTCTGGG+TGG | + | chr1_1:52019747-52019766 | None:intergenic | 30.0% |
| TTACATCCTTATCATGAAAG+TGG | - | chr1_1:52019862-52019881 | Msa0027630:CDS | 30.0% | |
| ! | ATAGTACTTTTCAGTGACTT+TGG | - | chr1_1:52019887-52019906 | Msa0027630:CDS | 30.0% |
| !!! | TTTTCAGTGACTTTGGTTTT+TGG | - | chr1_1:52019894-52019913 | Msa0027630:CDS | 30.0% |
| ATGATAGAAGTGATTACAAC+AGG | - | chr1_1:52019947-52019966 | Msa0027630:intron | 30.0% | |
| TAGGAGGAAATTATTAACTG+CGG | + | chr1_1:52020078-52020097 | None:intergenic | 30.0% | |
| ATGATATAATTGAGTCTAGG+AGG | + | chr1_1:52020094-52020113 | None:intergenic | 30.0% | |
| TGTGTTTGATCTTTGATACA+CGG | - | chr1_1:52020124-52020143 | Msa0027630:intron | 30.0% | |
| ! | TCTGGAACAATAAATTACCA+GGG | + | chr1_1:52020161-52020180 | None:intergenic | 30.0% |
| !! | TTCTGGAACAATAAATTACC+AGG | + | chr1_1:52020162-52020181 | None:intergenic | 30.0% |
| GAAATGTGAATGTAAACTTC+TGG | + | chr1_1:52020179-52020198 | None:intergenic | 30.0% | |
| GAAGTTTACATTCACATTTC+CGG | - | chr1_1:52020179-52020198 | Msa0027630:intron | 30.0% | |
| TAGAAATAATTATGGCTGAC+AGG | - | chr1_1:52020333-52020352 | Msa0027630:intron | 30.0% | |
| ! | AAAAGGAGGGATCATTTTAT+GGG | + | chr1_1:52020403-52020422 | None:intergenic | 30.0% |
| ! | TAAAAGGAGGGATCATTTTA+TGG | + | chr1_1:52020404-52020423 | None:intergenic | 30.0% |
| CAATAAAAGGCTTAAAAGGA+GGG | + | chr1_1:52020416-52020435 | None:intergenic | 30.0% | |
| ACAATAAAAGGCTTAAAAGG+AGG | + | chr1_1:52020417-52020436 | None:intergenic | 30.0% | |
| GTGGAACAATTTATGCAAAT+GGG | - | chr1_1:52020684-52020703 | Msa0027630:intron | 30.0% | |
| ! | CAACTTTCTGCTAAACTTTT+TGG | - | chr1_1:52020979-52020998 | Msa0027630:intron | 30.0% |
| GCCAATATATACATAGAATG+AGG | + | chr1_1:52021059-52021078 | None:intergenic | 30.0% | |
| AAACATCAACTTCTACAAGT+TGG | + | chr1_1:52021218-52021237 | None:intergenic | 30.0% | |
| !! | AAGTTGATGTTTACAGTTTG+CGG | - | chr1_1:52021226-52021245 | Msa0027630:intron | 30.0% |
| !!! | TTTTTTTCTTTCCAAGGTAG+TGG | + | chr1_1:52021274-52021293 | None:intergenic | 30.0% |
| GAACGATTTGATTGAGGATT+CGG | + | chr1_1:52018257-52018276 | None:intergenic | 35.0% | |
| TTCAAGGAACGATTTGATTG+AGG | + | chr1_1:52018263-52018282 | None:intergenic | 35.0% | |
| GCTTCGTAATATTGAAAAGC+AGG | - | chr1_1:52018466-52018485 | Msa0027630:three_prime_UTR | 35.0% | |
| GTTCCATTCTTTGACTATAC+TGG | - | chr1_1:52018514-52018533 | Msa0027630:three_prime_UTR | 35.0% | |
| CAAGTAGATGACCCAATTTA+AGG | + | chr1_1:52018829-52018848 | None:intergenic | 35.0% | |
| ACAAGTTATTTACAGGATCC+TGG | - | chr1_1:52018911-52018930 | Msa0027630:intron | 35.0% | |
| ACAGTGTGGCAATGTATTAA+AGG | - | chr1_1:52018934-52018953 | Msa0027630:intron | 35.0% | |
| CAGTGTGGCAATGTATTAAA+GGG | - | chr1_1:52018935-52018954 | Msa0027630:intron | 35.0% | |
| TTTCGATGGTACTTCTTCTA+CGG | + | chr1_1:52019128-52019147 | None:intergenic | 35.0% | |
| ATTCGGACAGAAAATTTCGA+TGG | + | chr1_1:52019142-52019161 | None:intergenic | 35.0% | |
| !!! | CTGTAGTTTTGAGTATCCTA+AGG | - | chr1_1:52019162-52019181 | Msa0027630:intron | 35.0% |
| TTGAGTATCCTAAGGATGAT+AGG | - | chr1_1:52019170-52019189 | Msa0027630:intron | 35.0% | |
| TTATCCATCCTATCATCCTT+AGG | + | chr1_1:52019181-52019200 | None:intergenic | 35.0% | |
| TATTTATTAGGCATCTGGTC+GGG | - | chr1_1:52019244-52019263 | Msa0027630:intron | 35.0% | |
| GTCAGGAAAAGCAAAATCAT+GGG | - | chr1_1:52019293-52019312 | Msa0027630:intron | 35.0% | |
| ! | TGCTGAAAGCACAATGAAAT+TGG | - | chr1_1:52019465-52019484 | Msa0027630:intron | 35.0% |
| TAATGAAAAGAGCCTGTCTT+CGG | + | chr1_1:52019674-52019693 | None:intergenic | 35.0% | |
| CTAGTCACACTCTTATTACT+TGG | + | chr1_1:52019791-52019810 | None:intergenic | 35.0% | |
| ! | CAAGTAATAAGAGTGTGACT+AGG | - | chr1_1:52019789-52019808 | Msa0027630:intron | 35.0% |
| CTATGACCACTTTCATGATA+AGG | + | chr1_1:52019871-52019890 | None:intergenic | 35.0% | |
| GAAATGCTTCCTGTTTCAAA+TGG | + | chr1_1:52020025-52020044 | None:intergenic | 35.0% | |
| AAATGCTTTACATGAGTGGA+AGG | - | chr1_1:52020212-52020231 | Msa0027630:intron | 35.0% | |
| ! | ATCATTTTATGGGATAGGAG+AGG | + | chr1_1:52020393-52020412 | None:intergenic | 35.0% |
| ATGGTCCATATATCAAGTGT+AGG | - | chr1_1:52020452-52020471 | Msa0027630:intron | 35.0% | |
| AGATGCCTACACTTGATATA+TGG | + | chr1_1:52020460-52020479 | None:intergenic | 35.0% | |
| GGTGGAACAATTTATGCAAA+TGG | - | chr1_1:52020683-52020702 | Msa0027630:intron | 35.0% | |
| TTCAATCACAATGTCATGTC+AGG | + | chr1_1:52020943-52020962 | None:intergenic | 35.0% | |
| !!! | CTTTTTGGAATATAAGAGCC+TGG | - | chr1_1:52020994-52021013 | Msa0027630:intron | 35.0% |
| ! | TATCTAATGCAGGTTTTTCC+AGG | + | chr1_1:52021015-52021034 | None:intergenic | 35.0% |
| TGGAAAAACCTGCATTAGAT+AGG | - | chr1_1:52021014-52021033 | Msa0027630:intron | 35.0% | |
| ! | TAGTCGTGGATTTTCTACTT+AGG | - | chr1_1:52021085-52021104 | Msa0027630:intron | 35.0% |
| !! | GATCAAACTTAGTTCTGTAC+AGG | + | chr1_1:52021194-52021213 | None:intergenic | 35.0% |
| ! | TGTTTACAGTTTGCGGTTTT+TGG | - | chr1_1:52021233-52021252 | Msa0027630:intron | 35.0% |
| TCCTTGAAAATGGAATCCGA+AGG | - | chr1_1:52018275-52018294 | Msa0027630:three_prime_UTR | 40.0% | |
| ! | ACCTTCGGATTCCATTTTCA+AGG | + | chr1_1:52018279-52018298 | None:intergenic | 40.0% |
| !! | TTTGGCTCTTCTACTAAGCA+AGG | + | chr1_1:52018435-52018454 | None:intergenic | 40.0% |
| ACGAAGCTCTTCATGAAGTT+TGG | + | chr1_1:52018453-52018472 | None:intergenic | 40.0% | |
| ! | GTGTATTTTGTTCTCGACAC+AGG | - | chr1_1:52018874-52018893 | Msa0027630:CDS | 40.0% |
| CTCGACACAGGTTTATGATA+TGG | - | chr1_1:52018886-52018905 | Msa0027630:CDS | 40.0% | |
| CAGTGTTCTTTGTTGACGAT+AGG | + | chr1_1:52018973-52018992 | None:intergenic | 40.0% | |
| CTACCTGTTCTTTCAGTACT+TGG | - | chr1_1:52019076-52019095 | Msa0027630:intron | 40.0% | |
| !! | CTACCAAGTACTGAAAGAAC+AGG | + | chr1_1:52019082-52019101 | None:intergenic | 40.0% |
| GTATCCTAAGGATGATAGGA+TGG | - | chr1_1:52019174-52019193 | Msa0027630:intron | 40.0% | |
| GGTCAGGAAAAGCAAAATCA+TGG | - | chr1_1:52019292-52019311 | Msa0027630:intron | 40.0% | |
| ! | TTTTTGTTGGCAGCTTGAAG+CGG | - | chr1_1:52019632-52019651 | Msa0027630:intron | 40.0% |
| AATGAAAAGAGCCTGTCTTC+GGG | + | chr1_1:52019673-52019692 | None:intergenic | 40.0% | |
| ! | ATAAGAGTGTGACTAGGTCT+TGG | - | chr1_1:52019795-52019814 | Msa0027630:intron | 40.0% |
| !! | TGAAACAGGAAGCATTTCAG+AGG | - | chr1_1:52020027-52020046 | Msa0027630:intron | 40.0% |
| ! | TCTTTGATACACGGAGTACT+AGG | - | chr1_1:52020133-52020152 | Msa0027630:intron | 40.0% |
| ! | GAGGGATCATTTTATGGGAT+AGG | + | chr1_1:52020398-52020417 | None:intergenic | 40.0% |
| TGTAGGCATCTTATCTCAAC+AGG | - | chr1_1:52020469-52020488 | Msa0027630:intron | 40.0% | |
| GTAGGCATCTTATCTCAACA+GGG | - | chr1_1:52020470-52020489 | Msa0027630:intron | 40.0% | |
| ! | GATCTCCCATCTGAGATAAA+TGG | + | chr1_1:52020638-52020657 | None:intergenic | 40.0% |
| ! | TCAGATGGGAGATCAGATTT+TGG | - | chr1_1:52020644-52020663 | Msa0027630:CDS | 40.0% |
| TATAGGGGTAAACCGAAGAA+AGG | - | chr1_1:52020847-52020866 | Msa0027630:intron | 40.0% | |
| GACATTGTGATTGAACATGC+TGG | - | chr1_1:52020948-52020967 | Msa0027630:intron | 40.0% | |
| GTAGAAAATCCACGACTACT+AGG | + | chr1_1:52021083-52021102 | None:intergenic | 40.0% | |
| !! | TTACAGTTTGCGGTTTTTGG+TGG | - | chr1_1:52021236-52021255 | Msa0027630:intron | 40.0% |
| !!! | TACAGTTTGCGGTTTTTGGT+GGG | - | chr1_1:52021237-52021256 | Msa0027630:intron | 40.0% |
| AGGAAGCCAACATTGCTGAA+GGG | + | chr1_1:52018415-52018434 | None:intergenic | 45.0% | |
| AAGGAAGCCAACATTGCTGA+AGG | + | chr1_1:52018416-52018435 | None:intergenic | 45.0% | |
| AATACATTGCCACACTGTCC+AGG | + | chr1_1:52018932-52018951 | None:intergenic | 45.0% | |
| TACTCACTGTGATACTGTGC+TGG | - | chr1_1:52019346-52019365 | Msa0027630:intron | 45.0% | |
| ACTCACTGTGATACTGTGCT+GGG | - | chr1_1:52019347-52019366 | Msa0027630:intron | 45.0% | |
| GAAAATCAGAAACACACCGC+TGG | + | chr1_1:52019712-52019731 | None:intergenic | 45.0% | |
| GTTGAGTTAAGAGTTTCGCG+TGG | - | chr1_1:52019969-52019988 | Msa0027630:intron | 45.0% | |
| TTTGGTCCTGGTCGATCAAA+AGG | - | chr1_1:52020662-52020681 | Msa0027630:intron | 45.0% | |
| GGTAAACCGAAGAAAGGAAG+AGG | - | chr1_1:52020853-52020872 | Msa0027630:intron | 45.0% | |
| AAGAGATGCGAAGAGAGCAA+GGG | - | chr1_1:52020882-52020901 | Msa0027630:intron | 45.0% | |
| ACCTGCATTAGATAGGCCAT+TGG | - | chr1_1:52021021-52021040 | Msa0027630:intron | 45.0% | |
| ACCAATGGCCTATCTAATGC+AGG | + | chr1_1:52021025-52021044 | None:intergenic | 45.0% | |
| GAGGAATTGCAGAGAACCAA+TGG | + | chr1_1:52021040-52021059 | None:intergenic | 45.0% | |
| !! | ATATTGGCTCCTAGTAGTCG+TGG | - | chr1_1:52021071-52021090 | Msa0027630:intron | 45.0% |
| ! | AATCCAGAGTACCACTACCT+TGG | - | chr1_1:52021260-52021279 | Msa0027630:intron | 45.0% |
| ! | TTTCCAAGGTAGTGGTACTC+TGG | + | chr1_1:52021266-52021285 | None:intergenic | 45.0% |
| !! | TCAAATAAAAAATTAATAAA+AGG | + | chr1_1:52018606-52018625 | None:intergenic | 5.0% |
| !! | TAAAAATATATAGTTATTTA+TGG | - | chr1_1:52019524-52019543 | Msa0027630:intron | 5.0% |
| GGTGAACCCTTCAGCAATGT+TGG | - | chr1_1:52018406-52018425 | Msa0027630:three_prime_UTR | 50.0% | |
| !! | CAGAAGTGTCAGTGCTACAG+AGG | - | chr1_1:52018736-52018755 | Msa0027630:intron | 50.0% |
| TTACAGGATCCTGGACAGTG+TGG | - | chr1_1:52018920-52018939 | Msa0027630:intron | 50.0% | |
| GAAAGTTTCAGCCCGAAGAC+AGG | - | chr1_1:52019659-52019678 | Msa0027630:intron | 50.0% | |
| !! | GGGAGATCAGATTTTGGTCC+TGG | - | chr1_1:52020650-52020669 | Msa0027630:CDS | 50.0% |
| ! | GTTCCACCTTTTGATCGACC+AGG | + | chr1_1:52020671-52020690 | None:intergenic | 50.0% |
| CTTGCTCTCTTCGCATCTCT+TGG | + | chr1_1:52020883-52020902 | None:intergenic | 50.0% | |
| CAAGAGATGCGAAGAGAGCA+AGG | - | chr1_1:52020881-52020900 | Msa0027630:intron | 50.0% | |
| GAAGCACGGACACAACAACG+CGG | - | chr1_1:52018653-52018672 | Msa0027630:CDS | 55.0% | |
| ATCTTCAGTGACCTCGCCAG+CGG | - | chr1_1:52019693-52019712 | Msa0027630:intron | 55.0% | |
| ! | ACACGGAGTACTAGGAACCC+TGG | - | chr1_1:52020141-52020160 | Msa0027630:intron | 55.0% |
| TAGGCAGAAGAGCTTGCAGC+TGG | - | chr1_1:52020532-52020551 | Msa0027630:intron | 55.0% | |
| GGTCCTGGTCGATCAAAAGG+TGG | - | chr1_1:52020665-52020684 | Msa0027630:intron | 55.0% | |
| GGCGCACCTCTTCCTTTCTT+CGG | + | chr1_1:52020862-52020881 | None:intergenic | 55.0% | |
| TCAGAAACACACCGCTGGCG+AGG | + | chr1_1:52019707-52019726 | None:intergenic | 60.0% | |
| GAGCTTGCAGCTGGACGAGA+CGG | - | chr1_1:52020541-52020560 | Msa0027630:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 52018204 | 52021369 | 52018204 | ID=Msa0027630;Name=Msa0027630 |
| chr1_1 | mRNA | 52018204 | 52021369 | 52018204 | ID=Msa0027630-mRNA-1;Parent=Msa0027630;Name=Msa0027630-mRNA-1;_AED=0.25;_eAED=0.25;_QI=80|1|1|1|1|1|7|412|157 |
| chr1_1 | exon | 52018204 | 52018721 | 52018204 | ID=Msa0027630-mRNA-1:exon:15311;Parent=Msa0027630-mRNA-1 |
| chr1_1 | exon | 52018865 | 52018925 | 52018865 | ID=Msa0027630-mRNA-1:exon:15310;Parent=Msa0027630-mRNA-1 |
| chr1_1 | exon | 52019011 | 52019038 | 52019011 | ID=Msa0027630-mRNA-1:exon:15309;Parent=Msa0027630-mRNA-1 |
| chr1_1 | exon | 52019859 | 52019928 | 52019859 | ID=Msa0027630-mRNA-1:exon:15308;Parent=Msa0027630-mRNA-1 |
| chr1_1 | exon | 52020577 | 52020677 | 52020577 | ID=Msa0027630-mRNA-1:exon:15307;Parent=Msa0027630-mRNA-1 |
| chr1_1 | exon | 52021086 | 52021180 | 52021086 | ID=Msa0027630-mRNA-1:exon:15306;Parent=Msa0027630-mRNA-1 |
| chr1_1 | exon | 52021277 | 52021369 | 52021277 | ID=Msa0027630-mRNA-1:exon:15305;Parent=Msa0027630-mRNA-1 |
| chr1_1 | five_prime_UTR | 52021290 | 52021369 | 52021290 | ID=Msa0027630-mRNA-1:five_prime_utr;Parent=Msa0027630-mRNA-1 |
| chr1_1 | CDS | 52021277 | 52021289 | 52021277 | ID=Msa0027630-mRNA-1:cds;Parent=Msa0027630-mRNA-1 |
| chr1_1 | CDS | 52021086 | 52021180 | 52021086 | ID=Msa0027630-mRNA-1:cds;Parent=Msa0027630-mRNA-1 |
| chr1_1 | CDS | 52020577 | 52020677 | 52020577 | ID=Msa0027630-mRNA-1:cds;Parent=Msa0027630-mRNA-1 |
| chr1_1 | CDS | 52019859 | 52019928 | 52019859 | ID=Msa0027630-mRNA-1:cds;Parent=Msa0027630-mRNA-1 |
| chr1_1 | CDS | 52019011 | 52019038 | 52019011 | ID=Msa0027630-mRNA-1:cds;Parent=Msa0027630-mRNA-1 |
| chr1_1 | CDS | 52018865 | 52018925 | 52018865 | ID=Msa0027630-mRNA-1:cds;Parent=Msa0027630-mRNA-1 |
| chr1_1 | CDS | 52018616 | 52018721 | 52018616 | ID=Msa0027630-mRNA-1:cds;Parent=Msa0027630-mRNA-1 |
| chr1_1 | three_prime_UTR | 52018204 | 52018615 | 52018204 | ID=Msa0027630-mRNA-1:three_prime_utr;Parent=Msa0027630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
