Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034860 | sp|Q9FLC2|MO3_ARATH | 53.571 | 308 | 134 | 3 | 14 | 315 | 99 | 403 | 8.06e-117 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034860 | Msa0107830 | 0.818486 | 1.911960e-52 | -8.615850e-47 |
| Msa0034860 | Msa0111780 | 0.815173 | 1.058849e-51 | -8.615850e-47 |
| Msa0034860 | Msa0129980 | 0.985607 | 4.277675e-164 | -8.615850e-47 |
| Msa0034860 | Msa0145050 | 0.807985 | 3.868692e-50 | -8.615850e-47 |
| Msa0034860 | Msa0370620 | 0.811774 | 5.917186e-51 | -8.615850e-47 |
| Msa0034860 | Msa0390200 | 0.813721 | 2.217631e-51 | -8.615850e-47 |
| Msa0034860 | Msa0561830 | 0.827101 | 1.883803e-54 | -8.615850e-47 |
| Msa0034860 | Msa0597820 | 0.805591 | 1.239618e-49 | -8.615850e-47 |
| Msa0034860 | Msa0614960 | 0.804644 | 1.956548e-49 | -8.615850e-47 |
| Msa0034860 | Msa0655370 | 0.822692 | 2.067690e-53 | -8.615850e-47 |
| Msa0034860 | Msa0699170 | 0.811473 | 6.880912e-51 | -8.615850e-47 |
| Msa0034860 | Msa0757220 | 0.806320 | 8.711810e-50 | -8.615850e-47 |
| Msa0034860 | Msa0904590 | 0.806448 | 8.185908e-50 | -8.615850e-47 |
| Msa0034860 | Msa0936630 | 0.803522 | 3.349650e-49 | -8.615850e-47 |
| Msa0034860 | Msa1120960 | 0.810353 | 1.202432e-50 | -8.615850e-47 |
| Msa0034860 | Msa1273320 | 0.800563 | 1.358980e-48 | -8.615850e-47 |
| Msa0034860 | Msa1316960 | 0.804479 | 2.118353e-49 | -8.615850e-47 |
| Msa0034860 | Msa1320160 | 0.804751 | 1.858775e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034860 | MtrunA17_Chr1g0197161 | 96.078 | 306 | 12 | 0 | 12 | 317 | 102 | 407 | 0.0 | 602 |
| Msa0034860 | MtrunA17_Chr1g0211141 | 81.935 | 310 | 56 | 0 | 7 | 316 | 89 | 398 | 3.39e-178 | 498 |
| Msa0034860 | MtrunA17_Chr1g0211171 | 78.931 | 318 | 60 | 2 | 7 | 317 | 93 | 410 | 1.15e-173 | 487 |
| Msa0034860 | MtrunA17_Chr1g0211181 | 75.410 | 305 | 75 | 0 | 12 | 316 | 100 | 404 | 2.66e-172 | 483 |
| Msa0034860 | MtrunA17_Chr1g0211151 | 74.026 | 308 | 74 | 2 | 12 | 316 | 102 | 406 | 1.20e-149 | 426 |
| Msa0034860 | MtrunA17_Chr5g0399671 | 36.770 | 291 | 177 | 3 | 7 | 296 | 129 | 413 | 3.59e-56 | 187 |
| Msa0034860 | MtrunA17_Chr5g0399661 | 35.082 | 305 | 188 | 4 | 15 | 316 | 133 | 430 | 9.65e-55 | 184 |
| Msa0034860 | MtrunA17_Chr4g0018001 | 32.314 | 229 | 145 | 3 | 94 | 317 | 16 | 239 | 4.70e-40 | 140 |
| Msa0034860 | MtrunA17_Chr4g0017981 | 35.404 | 161 | 101 | 2 | 158 | 317 | 1 | 159 | 3.20e-27 | 104 |
| Msa0034860 | MtrunA17_Chr5g0402211 | 27.559 | 254 | 171 | 7 | 16 | 266 | 182 | 425 | 3.10e-13 | 70.5 |
| Msa0034860 | MtrunA17_Chr8g0375081 | 24.806 | 258 | 173 | 7 | 16 | 266 | 187 | 430 | 4.99e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034860 | AT5G05320.1 | 53.571 | 308 | 134 | 3 | 14 | 315 | 99 | 403 | 8.20e-118 | 345 |
| Msa0034860 | AT4G38540.1 | 55.016 | 309 | 130 | 3 | 14 | 315 | 99 | 405 | 6.77e-109 | 323 |
| Msa0034860 | AT2G35660.2 | 36.842 | 304 | 182 | 4 | 15 | 315 | 24 | 320 | 1.88e-56 | 186 |
| Msa0034860 | AT2G35660.3 | 36.842 | 304 | 182 | 4 | 15 | 315 | 24 | 320 | 1.88e-56 | 186 |
| Msa0034860 | AT2G35660.1 | 36.842 | 304 | 182 | 4 | 15 | 315 | 138 | 434 | 3.46e-55 | 186 |
| Msa0034860 | AT4G15760.1 | 33.660 | 306 | 196 | 3 | 15 | 315 | 119 | 422 | 9.57e-55 | 184 |
| Msa0034860 | AT4G15760.2 | 33.660 | 306 | 196 | 3 | 15 | 315 | 131 | 434 | 1.13e-54 | 184 |
| Msa0034860 | AT2G29720.1 | 36.713 | 286 | 173 | 3 | 15 | 299 | 136 | 414 | 3.89e-52 | 177 |
| Msa0034860 | AT4G15765.1 | 31.606 | 193 | 120 | 2 | 15 | 205 | 69 | 251 | 1.62e-27 | 108 |
| Msa0034860 | AT4G15765.2 | 29.070 | 172 | 121 | 1 | 34 | 205 | 8 | 178 | 2.21e-24 | 98.6 |
| Msa0034860 | AT4G15765.5 | 29.070 | 172 | 121 | 1 | 34 | 205 | 8 | 178 | 2.21e-24 | 98.6 |
| Msa0034860 | AT4G15765.3 | 29.070 | 172 | 121 | 1 | 34 | 205 | 8 | 178 | 2.21e-24 | 98.6 |
| Msa0034860 | AT4G15765.4 | 29.070 | 172 | 121 | 1 | 34 | 205 | 8 | 178 | 2.21e-24 | 98.6 |
Find 90 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAAAGGTTGTTTCTATTC+AGG | 0.208741 | 1_1:+62860595 | Msa0034860:CDS |
| CTTCTTTAGAGATAAAATTT+TGG | 0.212850 | 1_1:+62863030 | Msa0034860:CDS |
| TGATACCAAATAATTGATTT+AGG | 0.238192 | 1_1:-62863312 | None:intergenic |
| GTTGTTTCTATTCAGGAATC+TGG | 0.279466 | 1_1:+62860602 | Msa0034860:CDS |
| ATCTTCTTCCTTCAATCTCT+TGG | 0.311658 | 1_1:-62862882 | None:intergenic |
| TGGTGATGCTTTACACTCTA+TGG | 0.315004 | 1_1:+62862781 | Msa0034860:CDS |
| AAAGGAAATGTTTGTGTTGT+TGG | 0.333037 | 1_1:+62862761 | Msa0034860:CDS |
| AAGTATTCACCTTGGCTTGT+AGG | 0.339371 | 1_1:-62861456 | None:intergenic |
| TCAGCAAGGTGGTTCAAAAT+TGG | 0.350501 | 1_1:+62863003 | Msa0034860:CDS |
| TTCAAGGAGGCCTCTTACAC+AGG | 0.357841 | 1_1:+62861291 | Msa0034860:CDS |
| ATGAGGTTCGTTGTGTTAGA+AGG | 0.362637 | 1_1:+62860516 | Msa0034860:CDS |
| GTAATGAGAAGGGTGTTTAC+TGG | 0.363036 | 1_1:+62861418 | Msa0034860:CDS |
| TCTAACACAACGAACCTCAT+AGG | 0.372306 | 1_1:-62860513 | None:intergenic |
| AAATCCATGGGAGCTCATAA+TGG | 0.391533 | 1_1:+62862727 | Msa0034860:CDS |
| AATAATTGATTTAGGTGTCT+TGG | 0.398641 | 1_1:-62863304 | None:intergenic |
| ATTGCTAGATCTTATATTGT+GGG | 0.402458 | 1_1:+62862974 | Msa0034860:CDS |
| CATTGGTTCCAACTCATGAT+TGG | 0.411602 | 1_1:-62861349 | None:intergenic |
| GGGTGTTCTGCTTTAGAAGA+TGG | 0.413811 | 1_1:+62862824 | Msa0034860:CDS |
| GGCAAAGTGGCTAGGCTTCA+AGG | 0.413872 | 1_1:+62861275 | Msa0034860:CDS |
| AATATGCAAAGGAGAGAAGA+TGG | 0.415258 | 1_1:+62862936 | Msa0034860:CDS |
| GCTTCTGATTTATTCTTTCA+CGG | 0.427429 | 1_1:-62863269 | None:intergenic |
| TAACATAAACCATGCTGAAA+AGG | 0.437958 | 1_1:-62863186 | None:intergenic |
| GGTGTTCTGCTTTAGAAGAT+GGG | 0.442446 | 1_1:+62862825 | Msa0034860:CDS |
| AATCCATGGGAGCTCATAAT+GGG | 0.446052 | 1_1:+62862728 | Msa0034860:CDS |
| TTCATGCAATACTTTGGTAA+AGG | 0.452134 | 1_1:+62861372 | Msa0034860:CDS |
| TGTTAGAAGGCAGTTATTGT+TGG | 0.455761 | 1_1:+62860529 | Msa0034860:CDS |
| CCAATGTTCATGCAATACTT+TGG | 0.461042 | 1_1:+62861366 | Msa0034860:CDS |
| TGCATATCTCCCTGTGTAAG+AGG | 0.462118 | 1_1:-62861301 | None:intergenic |
| GATATTCTCCAAGAGATTGA+AGG | 0.462676 | 1_1:+62862874 | Msa0034860:CDS |
| AGATCTAGCAATGAGATCAA+TGG | 0.477852 | 1_1:-62862963 | None:intergenic |
| ACACAGGGAGATATGCAGCC+AGG | 0.479595 | 1_1:+62861307 | Msa0034860:CDS |
| ACATATTCTTTCAGTTTAGA+CGG | 0.487971 | 1_1:-62862611 | None:intergenic |
| GCAATTCAAAAGGTATTGAT+CGG | 0.491066 | 1_1:+62861228 | Msa0034860:intron |
| TTTCCCATTATGAGCTCCCA+TGG | 0.491874 | 1_1:-62862731 | None:intergenic |
| CAGACTTCTTCAACAACTGA+TGG | 0.492041 | 1_1:-62863066 | None:intergenic |
| CAACCTTTGACAAGTACCTA+AGG | 0.500469 | 1_1:-62860583 | None:intergenic |
| CATTGCTAGATCTTATATTG+TGG | 0.505025 | 1_1:+62862973 | Msa0034860:CDS |
| AAGATACTCCATCTTGCTGA+TGG | 0.505178 | 1_1:+62860632 | Msa0034860:CDS |
| CAATTCAAAAGGTATTGATC+GGG | 0.505522 | 1_1:+62861229 | Msa0034860:intron |
| TAAACACCCTTCTCATTACA+TGG | 0.506474 | 1_1:-62861414 | None:intergenic |
| CCAAAGTATTGCATGAACAT+TGG | 0.507417 | 1_1:-62861366 | None:intergenic |
| CATGGATTTCTATATCTCAA+TGG | 0.511700 | 1_1:-62862713 | None:intergenic |
| AGCTTCCAAGTGGCACCCTT+AGG | 0.512169 | 1_1:+62860567 | Msa0034860:CDS |
| TATATCTCAATGGAGCTGAA+TGG | 0.513344 | 1_1:-62862703 | None:intergenic |
| CTAACACAACGAACCTCATA+GGG | 0.516396 | 1_1:-62860512 | None:intergenic |
| CATATTCTTTCAGTTTAGAC+GGG | 0.516764 | 1_1:-62862610 | None:intergenic |
| TGGCACCTGATCTTGCCCAA+GGG | 0.522171 | 1_1:+62862801 | Msa0034860:CDS |
| CATTCATTACAACATATGAA+TGG | 0.522623 | 1_1:-62863231 | None:intergenic |
| ATGGCACCTGATCTTGCCCA+AGG | 0.528780 | 1_1:+62862800 | Msa0034860:CDS |
| CACCCTTAGGTACTTGTCAA+AGG | 0.531818 | 1_1:+62860580 | Msa0034860:CDS |
| GAATACAAAATGATTGAGGA+AGG | 0.532351 | 1_1:+62862905 | Msa0034860:CDS |
| TTCTGCTTTAGAAGATGGGG+TGG | 0.533854 | 1_1:+62862829 | Msa0034860:CDS |
| CTTGCACTCTGAATAGCCCC+TGG | 0.543356 | 1_1:-62861325 | None:intergenic |
| CACAGGGAGATATGCAGCCA+GGG | 0.545096 | 1_1:+62861308 | Msa0034860:CDS |
| CACCTGATCTTGCCCAAGGG+GGG | 0.545355 | 1_1:+62862804 | Msa0034860:CDS |
| AAGGTATTGATCGGGTGTGA+TGG | 0.545974 | 1_1:+62861237 | Msa0034860:intron |
| TGGTTGTTCCATCAGCAAGA+TGG | 0.546204 | 1_1:-62860640 | None:intergenic |
| CATTGAGATATAGAAATCCA+TGG | 0.548958 | 1_1:+62862714 | Msa0034860:CDS |
| CACTTGGAAGCTCACTAGCA+AGG | 0.553316 | 1_1:-62860556 | None:intergenic |
| TCTTCAAAAGTAAATAACAT+TGG | 0.559754 | 1_1:-62863153 | None:intergenic |
| AGATGAATACAAAATGATTG+AGG | 0.564021 | 1_1:+62862901 | Msa0034860:CDS |
| GTCATGCAGTGGACCCTATG+AGG | 0.565252 | 1_1:+62860499 | Msa0034860:CDS |
| TCTGTGGTGGCAAAGTGGCT+AGG | 0.569965 | 1_1:+62861267 | Msa0034860:CDS |
| GGCACCTGATCTTGCCCAAG+GGG | 0.572377 | 1_1:+62862802 | Msa0034860:CDS |
| AGCTCTTCCATGTAATGAGA+AGG | 0.572389 | 1_1:+62861407 | Msa0034860:CDS |
| TCATATGTTGTAATGAATGA+TGG | 0.572530 | 1_1:+62863235 | Msa0034860:three_prime_UTR |
| GTGTTCTGCTTTAGAAGATG+GGG | 0.575129 | 1_1:+62862826 | Msa0034860:CDS |
| GTGCAAGACCAATCATGAGT+TGG | 0.580400 | 1_1:+62861341 | Msa0034860:CDS |
| ACATGGACTCCTACAAGCCA+AGG | 0.587321 | 1_1:+62861447 | Msa0034860:CDS |
| ATGAAAGATCTAACATCACT+TGG | 0.587994 | 1_1:-62862656 | None:intergenic |
| GCACCTGATCTTGCCCAAGG+GGG | 0.597126 | 1_1:+62862803 | Msa0034860:CDS |
| ACTTGGAAGCTCACTAGCAA+GGG | 0.600879 | 1_1:-62860555 | None:intergenic |
| ATAATGGGAAATATTAGCAA+AGG | 0.604077 | 1_1:+62862743 | Msa0034860:CDS |
| AGACTTCTTCAACAACTGAT+GGG | 0.608711 | 1_1:-62863065 | None:intergenic |
| GCTCTTCCATGTAATGAGAA+GGG | 0.614741 | 1_1:+62861408 | Msa0034860:CDS |
| AGGTTTGAAGAAATATGCAA+AGG | 0.618242 | 1_1:+62862925 | Msa0034860:CDS |
| ATTGAGATATAGAAATCCAT+GGG | 0.624711 | 1_1:+62862715 | Msa0034860:CDS |
| AAGTACCTAAGGGTGCCACT+TGG | 0.634329 | 1_1:-62860572 | None:intergenic |
| TCAAGGAGGCCTCTTACACA+GGG | 0.635552 | 1_1:+62861292 | Msa0034860:CDS |
| AACCTTTGACAAGTACCTAA+GGG | 0.636873 | 1_1:-62860582 | None:intergenic |
| GTGGGCTCTATTCAGCAAGG+TGG | 0.640123 | 1_1:+62862992 | Msa0034860:CDS |
| ATTGTGGGCTCTATTCAGCA+AGG | 0.655921 | 1_1:+62862989 | Msa0034860:CDS |
| TGATGGAGTTAACTCTGTGG+TGG | 0.668875 | 1_1:+62861254 | Msa0034860:CDS |
| TTAACTCTGTGGTGGCAAAG+TGG | 0.674089 | 1_1:+62861262 | Msa0034860:CDS |
| CTTGCTAGTGAGCTTCCAAG+TGG | 0.678158 | 1_1:+62860557 | Msa0034860:CDS |
| TGGAACAACCATCAAAACCA+AGG | 0.693752 | 1_1:+62860652 | Msa0034860:CDS |
| ACAGGGAGATATGCAGCCAG+GGG | 0.725743 | 1_1:+62861309 | Msa0034860:CDS |
| GTGTGATGGAGTTAACTCTG+TGG | 0.763284 | 1_1:+62861251 | Msa0034860:CDS |
| ATCTTTCATAGAAAACACTG+AGG | 0.765975 | 1_1:+62862670 | Msa0034860:CDS |
| AAAGTGGCTAGGCTTCAAGG+AGG | 0.813713 | 1_1:+62861278 | Msa0034860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTTTAATACTTATATA+AGG | + | chr1_1:62861998-62862017 | Msa0034860:intron | 10.0% |
| !!! | AATGTTATTAGTTTTTTTTT+TGG | - | chr1_1:62862379-62862398 | None:intergenic | 10.0% |
| !! | AAAACTAATAACATTAAATA+TGG | + | chr1_1:62862384-62862403 | Msa0034860:intron | 10.0% |
| !!! | AGATATATATTTCATTTTAT+GGG | - | chr1_1:62862557-62862576 | None:intergenic | 10.0% |
| !!! | TTTTAAACTAGGAAAATTAA+CGG | + | chr1_1:62860766-62860785 | Msa0034860:intron | 15.0% |
| !!! | ACTTGCATTTATTTATTTTT+TGG | - | chr1_1:62862231-62862250 | None:intergenic | 15.0% |
| !! | AAAAAATAAATAAATGCAAG+TGG | + | chr1_1:62862230-62862249 | Msa0034860:intron | 15.0% |
| !!! | GACTAATTTTAATTTTTTGA+TGG | + | chr1_1:62862297-62862316 | Msa0034860:intron | 15.0% |
| !! | TTCAAACAAATAGTTTAATT+TGG | - | chr1_1:62862534-62862553 | None:intergenic | 15.0% |
| !!! | CAGATATATATTTCATTTTA+TGG | - | chr1_1:62862558-62862577 | None:intergenic | 15.0% |
| !!! | CTTTTAGTAGCAATTTATAA+AGG | - | chr1_1:62860413-62860432 | None:intergenic | 20.0% |
| !! | AGGTAAATATTATTCAATGA+AGG | - | chr1_1:62861142-62861161 | None:intergenic | 20.0% |
| !! | AAGATGATATATATGTATCA+GGG | - | chr1_1:62861931-62861950 | None:intergenic | 20.0% |
| !!! | AAAGTATTAAAGTTCTATGT+TGG | - | chr1_1:62861968-62861987 | None:intergenic | 20.0% |
| !! | TAATCAAATAAATATGCAAG+TGG | + | chr1_1:62862198-62862217 | Msa0034860:intron | 20.0% |
| !!! | CTTCTTTAGAGATAAAATTT+TGG | + | chr1_1:62863030-62863049 | Msa0034860:CDS | 20.0% |
| !! | TCTTCAAAAGTAAATAACAT+TGG | - | chr1_1:62863156-62863175 | None:intergenic | 20.0% |
| ! | ACACTTAATATTGTTTACCT+TGG | - | chr1_1:62860672-62860691 | None:intergenic | 25.0% |
| !!! | CTTTCAAGTTTCAACTAAAA+TGG | - | chr1_1:62860898-62860917 | None:intergenic | 25.0% |
| !! | TTGAACTTTTTGCTTTCAAA+AGG | - | chr1_1:62860953-62860972 | None:intergenic | 25.0% |
| ! | TGAAATTGTTTACTTCTTAC+AGG | - | chr1_1:62861162-62861181 | None:intergenic | 25.0% |
| ! | TTATAACTTCAATTGTTACG+TGG | + | chr1_1:62861199-62861218 | Msa0034860:intron | 25.0% |
| ! | TGCTCATTTAGAAATAAGAT+TGG | - | chr1_1:62861485-62861504 | None:intergenic | 25.0% |
| !! | TCAAATTTAGGACAACAATA+TGG | - | chr1_1:62861712-62861731 | None:intergenic | 25.0% |
| ! | ATATTGTTGTCCTAAATTTG+AGG | + | chr1_1:62861711-62861730 | Msa0034860:intron | 25.0% |
| ! | TATTGTTGTCCTAAATTTGA+GGG | + | chr1_1:62861712-62861731 | Msa0034860:intron | 25.0% |
| ! | GATTGTAGGATTTATATATG+TGG | - | chr1_1:62861745-62861764 | None:intergenic | 25.0% |
| ! | AATGATGATAACATGATAGT+TGG | - | chr1_1:62861837-62861856 | None:intergenic | 25.0% |
| !! | ATTTAAGATGGTATCAAAGT+CGG | - | chr1_1:62861863-62861882 | None:intergenic | 25.0% |
| ! | CAAGATGATATATATGTATC+AGG | - | chr1_1:62861932-62861951 | None:intergenic | 25.0% |
| ! | ACGTTATAAAATTTGTCTCA+TGG | + | chr1_1:62862039-62862058 | Msa0034860:intron | 25.0% |
| ! | CGTTATAAAATTTGTCTCAT+GGG | + | chr1_1:62862040-62862059 | Msa0034860:intron | 25.0% |
| ! | TAGTTTACTCACTATTTGAA+CGG | + | chr1_1:62862326-62862345 | Msa0034860:intron | 25.0% |
| ! | TTTGGATATGCAAAAGAAAA+GGG | - | chr1_1:62862516-62862535 | None:intergenic | 25.0% |
| ! | ATTTGGATATGCAAAAGAAA+AGG | - | chr1_1:62862517-62862536 | None:intergenic | 25.0% |
| ! | ACATATTCTTTCAGTTTAGA+CGG | - | chr1_1:62862614-62862633 | None:intergenic | 25.0% |
| ! | ATTGAGATATAGAAATCCAT+GGG | + | chr1_1:62862715-62862734 | Msa0034860:CDS | 25.0% |
| !! | ATAATGGGAAATATTAGCAA+AGG | + | chr1_1:62862743-62862762 | Msa0034860:CDS | 25.0% |
| ! | AGATGAATACAAAATGATTG+AGG | + | chr1_1:62862901-62862920 | Msa0034860:CDS | 25.0% |
| ! | ATTGCTAGATCTTATATTGT+GGG | + | chr1_1:62862974-62862993 | Msa0034860:CDS | 25.0% |
| !!! | TTTATTTTTCCTTTTCAGCA+TGG | + | chr1_1:62863177-62863196 | Msa0034860:three_prime_UTR | 25.0% |
| ! | CATTCATTACAACATATGAA+TGG | - | chr1_1:62863234-62863253 | None:intergenic | 25.0% |
| ! | TCATATGTTGTAATGAATGA+TGG | + | chr1_1:62863235-62863254 | Msa0034860:three_prime_UTR | 25.0% |
| GTAGCAATTTATAAAGGCAA+TGG | - | chr1_1:62860407-62860426 | None:intergenic | 30.0% | |
| AGAATAATAGAGTTTGAGCA+GGG | - | chr1_1:62860456-62860475 | None:intergenic | 30.0% | |
| AAGAATAATAGAGTTTGAGC+AGG | - | chr1_1:62860457-62860476 | None:intergenic | 30.0% | |
| !!! | ATTGTTTACCTTGGTTTTGA+TGG | - | chr1_1:62860663-62860682 | None:intergenic | 30.0% |
| TAAGTGTGACATATACAACA+AGG | + | chr1_1:62860685-62860704 | Msa0034860:intron | 30.0% | |
| !! | GCAATTCAAAAGGTATTGAT+CGG | + | chr1_1:62861228-62861247 | Msa0034860:intron | 30.0% |
| !! | CAATTCAAAAGGTATTGATC+GGG | + | chr1_1:62861229-62861248 | Msa0034860:intron | 30.0% |
| TTCATGCAATACTTTGGTAA+AGG | + | chr1_1:62861372-62861391 | Msa0034860:CDS | 30.0% | |
| !!! | GTGTTTACTGGTTTTTTACA+TGG | + | chr1_1:62861430-62861449 | Msa0034860:CDS | 30.0% |
| AAAGCTAACTCATAAGATGA+TGG | + | chr1_1:62861582-62861601 | Msa0034860:intron | 30.0% | |
| GTAGGATTTATATATGTGGT+AGG | - | chr1_1:62861741-62861760 | None:intergenic | 30.0% | |
| ATAACATGATAGTTGGATCA+AGG | - | chr1_1:62861830-62861849 | None:intergenic | 30.0% | |
| ! | TTTAAGATGGTATCAAAGTC+GGG | - | chr1_1:62861862-62861881 | None:intergenic | 30.0% |
| ACAAGTTAGATCTAAGAATG+AGG | + | chr1_1:62861902-62861921 | Msa0034860:intron | 30.0% | |
| TTCTATGAAGAAGATGAAGT+TGG | - | chr1_1:62862091-62862110 | None:intergenic | 30.0% | |
| ! | AATGTTGCTTGTATTCAAGA+AGG | + | chr1_1:62862481-62862500 | Msa0034860:intron | 30.0% |
| ! | ATGTTGCTTGTATTCAAGAA+GGG | + | chr1_1:62862482-62862501 | Msa0034860:intron | 30.0% |
| CATATTCTTTCAGTTTAGAC+GGG | - | chr1_1:62862613-62862632 | None:intergenic | 30.0% | |
| ATGAAAGATCTAACATCACT+TGG | - | chr1_1:62862659-62862678 | None:intergenic | 30.0% | |
| ATCTTTCATAGAAAACACTG+AGG | + | chr1_1:62862670-62862689 | Msa0034860:CDS | 30.0% | |
| CATGGATTTCTATATCTCAA+TGG | - | chr1_1:62862716-62862735 | None:intergenic | 30.0% | |
| CATTGAGATATAGAAATCCA+TGG | + | chr1_1:62862714-62862733 | Msa0034860:CDS | 30.0% | |
| AAAGGAAATGTTTGTGTTGT+TGG | + | chr1_1:62862761-62862780 | Msa0034860:CDS | 30.0% | |
| GAATACAAAATGATTGAGGA+AGG | + | chr1_1:62862905-62862924 | Msa0034860:CDS | 30.0% | |
| AGGTTTGAAGAAATATGCAA+AGG | + | chr1_1:62862925-62862944 | Msa0034860:CDS | 30.0% | |
| CATTGCTAGATCTTATATTG+TGG | + | chr1_1:62862973-62862992 | Msa0034860:CDS | 30.0% | |
| TAACATAAACCATGCTGAAA+AGG | - | chr1_1:62863189-62863208 | None:intergenic | 30.0% | |
| GCTTCTGATTTATTCTTTCA+CGG | - | chr1_1:62863272-62863291 | None:intergenic | 30.0% | |
| !! | TGTGTTTTTATGTCATGCAG+TGG | + | chr1_1:62860488-62860507 | Msa0034860:CDS | 35.0% |
| TGTTAGAAGGCAGTTATTGT+TGG | + | chr1_1:62860529-62860548 | Msa0034860:CDS | 35.0% | |
| AACCTTTGACAAGTACCTAA+GGG | - | chr1_1:62860585-62860604 | None:intergenic | 35.0% | |
| !! | GTCAAAGGTTGTTTCTATTC+AGG | + | chr1_1:62860595-62860614 | Msa0034860:CDS | 35.0% |
| !! | GTTGTTTCTATTCAGGAATC+TGG | + | chr1_1:62860602-62860621 | Msa0034860:CDS | 35.0% |
| GGCAAGATACATATTTCTTG+TGG | + | chr1_1:62860706-62860725 | Msa0034860:intron | 35.0% | |
| TATCACATATTCCTCACACT+TGG | + | chr1_1:62860743-62860762 | Msa0034860:intron | 35.0% | |
| ! | CTAGTTTAAAACCAAGTGTG+AGG | - | chr1_1:62860757-62860776 | None:intergenic | 35.0% |
| !!! | CTCACACTTGGTTTTAAACT+AGG | + | chr1_1:62860755-62860774 | Msa0034860:intron | 35.0% |
| !! | CCAAAGTATTGCATGAACAT+TGG | - | chr1_1:62861369-62861388 | None:intergenic | 35.0% |
| CCAATGTTCATGCAATACTT+TGG | + | chr1_1:62861366-62861385 | Msa0034860:CDS | 35.0% | |
| !!! | TTTGGTAAAGGTTTTAGAGC+TGG | + | chr1_1:62861384-62861403 | Msa0034860:CDS | 35.0% |
| TAAACACCCTTCTCATTACA+TGG | - | chr1_1:62861417-62861436 | None:intergenic | 35.0% | |
| !! | ATTGGAGAAAGTATTCACCT+TGG | - | chr1_1:62861467-62861486 | None:intergenic | 35.0% |
| AAGCTAGCTAACACTTTGTT+TGG | + | chr1_1:62861523-62861542 | Msa0034860:intron | 35.0% | |
| GGTTGTGAAAATAAAGTGAG+AGG | + | chr1_1:62861544-62861563 | Msa0034860:intron | 35.0% | |
| ATGTGTATAAGTAAGTGCTC+GGG | - | chr1_1:62861610-62861629 | None:intergenic | 35.0% | |
| GATGTGTATAAGTAAGTGCT+CGG | - | chr1_1:62861611-62861630 | None:intergenic | 35.0% | |
| AGACACATAGAATCCATGTT+GGG | - | chr1_1:62861684-62861703 | None:intergenic | 35.0% | |
| TCTAACATTGTCTAGGTTTC+TGG | - | chr1_1:62861767-62861786 | None:intergenic | 35.0% | |
| ATCAGAGTCTAACATTGTCT+AGG | - | chr1_1:62861774-62861793 | None:intergenic | 35.0% | |
| GATACCATCTTAAATGAACC+TGG | + | chr1_1:62861868-62861887 | Msa0034860:intron | 35.0% | |
| AGATCCAGGTTCATTTAAGA+TGG | - | chr1_1:62861875-62861894 | None:intergenic | 35.0% | |
| ! | GAAGAAGATGAAGTTGGTTA+CGG | - | chr1_1:62862085-62862104 | None:intergenic | 35.0% |
| GTGCAAGCAAACTGAAATTA+GGG | - | chr1_1:62862115-62862134 | None:intergenic | 35.0% | |
| TGTGCAAGCAAACTGAAATT+AGG | - | chr1_1:62862116-62862135 | None:intergenic | 35.0% | |
| AATTATATTAGCGCAGCAGT+TGG | - | chr1_1:62862147-62862166 | None:intergenic | 35.0% | |
| ! | GAAAGTGGAAGTTGGTTTAT+GGG | - | chr1_1:62862258-62862277 | None:intergenic | 35.0% |
| TTTGTAAGGAAAGTGGAAGT+TGG | - | chr1_1:62862266-62862285 | None:intergenic | 35.0% | |
| GAGCAAATTTGTAAGGAAAG+TGG | - | chr1_1:62862273-62862292 | None:intergenic | 35.0% | |
| GTCACTTGAGCAAATTTGTA+AGG | - | chr1_1:62862280-62862299 | None:intergenic | 35.0% | |
| TATATCTCAATGGAGCTGAA+TGG | - | chr1_1:62862706-62862725 | None:intergenic | 35.0% | |
| GATATTCTCCAAGAGATTGA+AGG | + | chr1_1:62862874-62862893 | Msa0034860:CDS | 35.0% | |
| ATCTTCTTCCTTCAATCTCT+TGG | - | chr1_1:62862885-62862904 | None:intergenic | 35.0% | |
| AATATGCAAAGGAGAGAAGA+TGG | + | chr1_1:62862936-62862955 | Msa0034860:CDS | 35.0% | |
| AGATCTAGCAATGAGATCAA+TGG | - | chr1_1:62862966-62862985 | None:intergenic | 35.0% | |
| AGACTTCTTCAACAACTGAT+GGG | - | chr1_1:62863068-62863087 | None:intergenic | 35.0% | |
| !!! | AAGAAGTCTGATTTTGACTG+TGG | + | chr1_1:62863079-62863098 | Msa0034860:CDS | 35.0% |
| GTGAATGTTAACATCAGTGG+CGG | - | chr1_1:62860383-62860402 | None:intergenic | 40.0% | |
| GGAGTGAATGTTAACATCAG+TGG | - | chr1_1:62860386-62860405 | None:intergenic | 40.0% | |
| CTAACACAACGAACCTCATA+GGG | - | chr1_1:62860515-62860534 | None:intergenic | 40.0% | |
| TCTAACACAACGAACCTCAT+AGG | - | chr1_1:62860516-62860535 | None:intergenic | 40.0% | |
| ATGAGGTTCGTTGTGTTAGA+AGG | + | chr1_1:62860516-62860535 | Msa0034860:CDS | 40.0% | |
| CAACCTTTGACAAGTACCTA+AGG | - | chr1_1:62860586-62860605 | None:intergenic | 40.0% | |
| AAGATACTCCATCTTGCTGA+TGG | + | chr1_1:62860632-62860651 | Msa0034860:CDS | 40.0% | |
| TGGAACAACCATCAAAACCA+AGG | + | chr1_1:62860652-62860671 | Msa0034860:CDS | 40.0% | |
| TGGTGGCAAAAATTGATCGT+GGG | + | chr1_1:62860847-62860866 | Msa0034860:intron | 40.0% | |
| GTGGATGCTTGCAATTCAAA+AGG | + | chr1_1:62861218-62861237 | Msa0034860:intron | 40.0% | |
| !! | CATTGGTTCCAACTCATGAT+TGG | - | chr1_1:62861352-62861371 | None:intergenic | 40.0% |
| AGCTCTTCCATGTAATGAGA+AGG | + | chr1_1:62861407-62861426 | Msa0034860:CDS | 40.0% | |
| GCTCTTCCATGTAATGAGAA+GGG | + | chr1_1:62861408-62861427 | Msa0034860:CDS | 40.0% | |
| !! | GTAATGAGAAGGGTGTTTAC+TGG | + | chr1_1:62861418-62861437 | Msa0034860:CDS | 40.0% |
| !! | AAGTATTCACCTTGGCTTGT+AGG | - | chr1_1:62861459-62861478 | None:intergenic | 40.0% |
| ! | GTGAGAGGAATGATAGTGAA+AGG | + | chr1_1:62861559-62861578 | Msa0034860:intron | 40.0% |
| ATTGGAGTCTCACATTGTCA+AGG | - | chr1_1:62861648-62861667 | None:intergenic | 40.0% | |
| CAGACACATAGAATCCATGT+TGG | - | chr1_1:62861685-62861704 | None:intergenic | 40.0% | |
| ! | TGTCTAGGTTTCTGGATTGT+AGG | - | chr1_1:62861759-62861778 | None:intergenic | 40.0% |
| AATAGTCACACTCACGTATG+TGG | + | chr1_1:62861802-62861821 | Msa0034860:intron | 40.0% | |
| CTGCTGCGCTAATATAATTG+TGG | + | chr1_1:62862148-62862167 | Msa0034860:intron | 40.0% | |
| ! | GGAAAGTGGAAGTTGGTTTA+TGG | - | chr1_1:62862259-62862278 | None:intergenic | 40.0% |
| TTGCTTGTATTCAAGAAGGG+AGG | + | chr1_1:62862485-62862504 | Msa0034860:intron | 40.0% | |
| ! | TCTGACTTGCCTTACAGAAA+AGG | + | chr1_1:62862574-62862593 | Msa0034860:intron | 40.0% |
| ! | GTAGTAGCTCCTTTTCTGTA+AGG | - | chr1_1:62862586-62862605 | None:intergenic | 40.0% |
| AAATCCATGGGAGCTCATAA+TGG | + | chr1_1:62862727-62862746 | Msa0034860:CDS | 40.0% | |
| AATCCATGGGAGCTCATAAT+GGG | + | chr1_1:62862728-62862747 | Msa0034860:CDS | 40.0% | |
| ! | TGGTGATGCTTTACACTCTA+TGG | + | chr1_1:62862781-62862800 | Msa0034860:CDS | 40.0% |
| !! | GGTGTTCTGCTTTAGAAGAT+GGG | + | chr1_1:62862825-62862844 | Msa0034860:CDS | 40.0% |
| !! | GTGTTCTGCTTTAGAAGATG+GGG | + | chr1_1:62862826-62862845 | Msa0034860:CDS | 40.0% |
| TCAGCAAGGTGGTTCAAAAT+TGG | + | chr1_1:62863003-62863022 | Msa0034860:CDS | 40.0% | |
| CAGACTTCTTCAACAACTGA+TGG | - | chr1_1:62863069-62863088 | None:intergenic | 40.0% | |
| GGAGATATATTTGTGCAGGC+AGG | + | chr1_1:62860332-62860351 | Msa0034860:intron | 45.0% | |
| ACTTGGAAGCTCACTAGCAA+GGG | - | chr1_1:62860558-62860577 | None:intergenic | 45.0% | |
| CACCCTTAGGTACTTGTCAA+AGG | + | chr1_1:62860580-62860599 | Msa0034860:CDS | 45.0% | |
| TGGTTGTTCCATCAGCAAGA+TGG | - | chr1_1:62860643-62860662 | None:intergenic | 45.0% | |
| !! | CTAAATGCGTGTCGACTATG+TGG | + | chr1_1:62860827-62860846 | Msa0034860:intron | 45.0% |
| GTGGTGGCAAAAATTGATCG+TGG | + | chr1_1:62860846-62860865 | Msa0034860:intron | 45.0% | |
| !! | AAGGTATTGATCGGGTGTGA+TGG | + | chr1_1:62861237-62861256 | Msa0034860:intron | 45.0% |
| ! | GTGTGATGGAGTTAACTCTG+TGG | + | chr1_1:62861251-62861270 | Msa0034860:CDS | 45.0% |
| TGATGGAGTTAACTCTGTGG+TGG | + | chr1_1:62861254-62861273 | Msa0034860:CDS | 45.0% | |
| TTAACTCTGTGGTGGCAAAG+TGG | + | chr1_1:62861262-62861281 | Msa0034860:CDS | 45.0% | |
| TGCATATCTCCCTGTGTAAG+AGG | - | chr1_1:62861304-62861323 | None:intergenic | 45.0% | |
| GTGCAAGACCAATCATGAGT+TGG | + | chr1_1:62861341-62861360 | Msa0034860:CDS | 45.0% | |
| CTCACATTGTCAAGGTTCTC+AGG | - | chr1_1:62861640-62861659 | None:intergenic | 45.0% | |
| TTGGGCATGAAGCTAGGTAT+TGG | - | chr1_1:62861666-62861685 | None:intergenic | 45.0% | |
| GGTAGGACACCCTCAAATTT+AGG | - | chr1_1:62861724-62861743 | None:intergenic | 45.0% | |
| AACTTGTGAGAGTGAGATCC+AGG | - | chr1_1:62861889-62861908 | None:intergenic | 45.0% | |
| GTTGGTTACGGTGGTTTCAT+AGG | - | chr1_1:62862073-62862092 | None:intergenic | 45.0% | |
| ! | GAAGATGAAGTTGGTTACGG+TGG | - | chr1_1:62862082-62862101 | None:intergenic | 45.0% |
| TTTCCCATTATGAGCTCCCA+TGG | - | chr1_1:62862734-62862753 | None:intergenic | 45.0% | |
| !! | GGGTGTTCTGCTTTAGAAGA+TGG | + | chr1_1:62862824-62862843 | Msa0034860:CDS | 45.0% |
| !! | TTCTGCTTTAGAAGATGGGG+TGG | + | chr1_1:62862829-62862848 | Msa0034860:CDS | 45.0% |
| !!! | AAGATGGGGTGGTTTTAGCA+AGG | + | chr1_1:62862840-62862859 | Msa0034860:CDS | 45.0% |
| ATTGTGGGCTCTATTCAGCA+AGG | + | chr1_1:62862989-62863008 | Msa0034860:CDS | 45.0% | |
| GGGGGGAGATATATTTGTGC+AGG | + | chr1_1:62860328-62860347 | Msa0034860:intron | 50.0% | |
| AGCCACACACAAGGTTGTGT+GGG | - | chr1_1:62860360-62860379 | None:intergenic | 50.0% | |
| CACTTGGAAGCTCACTAGCA+AGG | - | chr1_1:62860559-62860578 | None:intergenic | 50.0% | |
| CTTGCTAGTGAGCTTCCAAG+TGG | + | chr1_1:62860557-62860576 | Msa0034860:CDS | 50.0% | |
| !! | AAGTACCTAAGGGTGCCACT+TGG | - | chr1_1:62860575-62860594 | None:intergenic | 50.0% |
| !! | AATGCGTGTCGACTATGTGG+TGG | + | chr1_1:62860830-62860849 | Msa0034860:intron | 50.0% |
| AAAGTGGCTAGGCTTCAAGG+AGG | + | chr1_1:62861278-62861297 | Msa0034860:CDS | 50.0% | |
| TTCAAGGAGGCCTCTTACAC+AGG | + | chr1_1:62861291-62861310 | Msa0034860:CDS | 50.0% | |
| TCAAGGAGGCCTCTTACACA+GGG | + | chr1_1:62861292-62861311 | Msa0034860:CDS | 50.0% | |
| ACATGGACTCCTACAAGCCA+AGG | + | chr1_1:62861447-62861466 | Msa0034860:CDS | 50.0% | |
| ACCTAGCTTCATGCCCAACA+TGG | + | chr1_1:62861668-62861687 | Msa0034860:intron | 50.0% | |
| TCCATGTTGGGCATGAAGCT+AGG | - | chr1_1:62861672-62861691 | None:intergenic | 50.0% | |
| TAAAGCAGAACACCCCCCTT+GGG | - | chr1_1:62862819-62862838 | None:intergenic | 50.0% | |
| AGCCCACACAACCTTGTGTG+TGG | + | chr1_1:62860355-62860374 | Msa0034860:intron | 55.0% | |
| GAGCCACACACAAGGTTGTG+TGG | - | chr1_1:62860361-62860380 | None:intergenic | 55.0% | |
| GTCATGCAGTGGACCCTATG+AGG | + | chr1_1:62860499-62860518 | Msa0034860:CDS | 55.0% | |
| AGCTTCCAAGTGGCACCCTT+AGG | + | chr1_1:62860567-62860586 | Msa0034860:CDS | 55.0% | |
| TCTGTGGTGGCAAAGTGGCT+AGG | + | chr1_1:62861267-62861286 | Msa0034860:CDS | 55.0% | |
| GGCAAAGTGGCTAGGCTTCA+AGG | + | chr1_1:62861275-62861294 | Msa0034860:CDS | 55.0% | |
| ACACAGGGAGATATGCAGCC+AGG | + | chr1_1:62861307-62861326 | Msa0034860:CDS | 55.0% | |
| CACAGGGAGATATGCAGCCA+GGG | + | chr1_1:62861308-62861327 | Msa0034860:CDS | 55.0% | |
| ACAGGGAGATATGCAGCCAG+GGG | + | chr1_1:62861309-62861328 | Msa0034860:CDS | 55.0% | |
| CTTGCACTCTGAATAGCCCC+TGG | - | chr1_1:62861328-62861347 | None:intergenic | 55.0% | |
| ATGGCACCTGATCTTGCCCA+AGG | + | chr1_1:62862800-62862819 | Msa0034860:CDS | 55.0% | |
| TGGCACCTGATCTTGCCCAA+GGG | + | chr1_1:62862801-62862820 | Msa0034860:CDS | 55.0% | |
| CTAAAGCAGAACACCCCCCT+TGG | - | chr1_1:62862820-62862839 | None:intergenic | 55.0% | |
| GTGGGCTCTATTCAGCAAGG+TGG | + | chr1_1:62862992-62863011 | Msa0034860:CDS | 55.0% | |
| GGCACCTGATCTTGCCCAAG+GGG | + | chr1_1:62862802-62862821 | Msa0034860:CDS | 60.0% | |
| GCACCTGATCTTGCCCAAGG+GGG | + | chr1_1:62862803-62862822 | Msa0034860:CDS | 60.0% | |
| CACCTGATCTTGCCCAAGGG+GGG | + | chr1_1:62862804-62862823 | Msa0034860:CDS | 60.0% | |
| ! | CAGTGGCGGAGCCACACACA+AGG | - | chr1_1:62860369-62860388 | None:intergenic | 65.0% |
| CACCCCCCTTGGGCAAGATC+AGG | - | chr1_1:62862809-62862828 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 62860323 | 62863323 | 62860323 | ID=Msa0034860;Name=Msa0034860 |
| chr1_1 | mRNA | 62860323 | 62863323 | 62860323 | ID=Msa0034860-mRNA-1;Parent=Msa0034860;Name=Msa0034860-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.66|0.25|0.75|0.66|0.5|4|203|318 |
| chr1_1 | exon | 62860323 | 62860325 | 62860323 | ID=Msa0034860-mRNA-1:exon:19912;Parent=Msa0034860-mRNA-1 |
| chr1_1 | exon | 62860479 | 62860673 | 62860479 | ID=Msa0034860-mRNA-1:exon:19913;Parent=Msa0034860-mRNA-1 |
| chr1_1 | exon | 62861240 | 62861468 | 62861240 | ID=Msa0034860-mRNA-1:exon:19914;Parent=Msa0034860-mRNA-1 |
| chr1_1 | exon | 62862591 | 62863323 | 62862591 | ID=Msa0034860-mRNA-1:exon:19915;Parent=Msa0034860-mRNA-1 |
| chr1_1 | CDS | 62860323 | 62860325 | 62860323 | ID=Msa0034860-mRNA-1:cds;Parent=Msa0034860-mRNA-1 |
| chr1_1 | CDS | 62860479 | 62860673 | 62860479 | ID=Msa0034860-mRNA-1:cds;Parent=Msa0034860-mRNA-1 |
| chr1_1 | CDS | 62861240 | 62861468 | 62861240 | ID=Msa0034860-mRNA-1:cds;Parent=Msa0034860-mRNA-1 |
| chr1_1 | CDS | 62862591 | 62863120 | 62862591 | ID=Msa0034860-mRNA-1:cds;Parent=Msa0034860-mRNA-1 |
| chr1_1 | three_prime_UTR | 62863121 | 62863323 | 62863121 | ID=Msa0034860-mRNA-1:three_prime_utr;Parent=Msa0034860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
