AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0145050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0145050 MtrunA17_Chr1g0153271 94.737 304 16 0 1 304 168 471 0.0 601
Msa0145050 MtrunA17_Chr5g0402171 56.040 298 130 1 1 297 170 467 1.57e-123 361
Msa0145050 MtrunA17_Chr7g0276561 46.372 317 142 2 1 290 175 490 3.11e-101 305
Msa0145050 MtrunA17_Chr3g0123741 48.399 281 123 3 12 290 37 297 4.00e-89 268
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0145050 AT5G42930.1 60.927 302 112 3 1 297 167 467 8.71e-142 408
Msa0145050 AT1G56630.1 58.416 303 112 3 1 290 169 470 9.55e-129 376
Msa0145050 AT1G45201.1 56.314 293 125 3 1 292 172 462 1.46e-120 354
Msa0145050 AT1G45201.3 56.314 293 125 3 1 292 197 487 2.11e-120 355
Msa0145050 AT5G67050.1 49.832 297 141 3 1 289 166 462 2.09e-108 323
Msa0145050 AT5G42930.2 61.818 220 79 2 1 216 167 385 2.80e-102 305
Msa0145050 AT3G14360.1 45.603 307 150 2 1 290 202 508 3.25e-96 293
Msa0145050 AT1G45201.2 57.143 217 90 3 1 216 172 386 2.33e-87 266
Msa0145050 AT5G18640.5 27.059 170 85 6 32 191 98 238 6.94e-12 65.1
Msa0145050 AT5G18640.1 27.059 170 85 6 32 191 98 238 9.06e-12 65.5
Msa0145050 AT5G18640.3 27.059 170 85 6 32 191 98 238 9.06e-12 65.5
Msa0145050 AT5G18640.4 27.059 170 85 6 32 191 110 250 9.49e-12 65.5
Msa0145050 AT5G18640.2 27.059 170 85 6 32 191 110 250 9.49e-12 65.5
Msa0145050 AT5G18630.3 29.091 165 88 6 32 191 98 238 3.72e-11 63.2

Find 86 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTCAATGATACAAATTT+TGG 0.143503 1_4:-4648070 None:intergenic
CAAAGATCTTAAACGCAATT+TGG 0.145443 1_4:+4647646 Msa0145050:CDS
CAAATTGCGTTTAAGATCTT+TGG 0.203426 1_4:-4647645 None:intergenic
AGAACTATTTCTCTTTGTTT+TGG 0.217797 1_4:+4647616 Msa0145050:CDS
GCTTAGACATTAGTCATCTT+TGG 0.241224 1_4:-4647850 None:intergenic
GATGCAAAATTCATATTAAC+AGG 0.242406 1_4:+4647172 Msa0145050:CDS
AGAAATGTTGAAGGAAAATA+AGG 0.289378 1_4:+4647150 Msa0145050:CDS
TTAGAAGGTGTTTATACATT+TGG 0.293212 1_4:+4647274 Msa0145050:CDS
CTTGTTGGATTGATAATTCC+AGG 0.293883 1_4:+4647747 Msa0145050:CDS
CATATTAACAGGGCATAGTT+TGG 0.299211 1_4:+4647183 Msa0145050:CDS
ATATGTTTACTCCAATGATA+TGG 0.321173 1_4:+4647375 Msa0145050:CDS
ATTTACTCTAAATAAAACTA+TGG 0.323944 1_4:-4645324 None:intergenic
TAGAAGGTGTTTATACATTT+GGG 0.324429 1_4:+4647275 Msa0145050:CDS
TTCCTTCTACCATTTGTTCT+AGG 0.326370 1_4:+4647684 Msa0145050:CDS
AAAGAGAAATAGTTCTTGTT+TGG 0.329154 1_4:-4647609 None:intergenic
AGAGTTGGAGACGAGAAGTT+TGG 0.331097 1_4:+4647304 Msa0145050:CDS
CTTCTTTCATCAATTTCTTT+AGG 0.343200 1_4:-4647085 None:intergenic
TTGATTGTGGTTGCATTTAG+AGG 0.348509 1_4:+4646935 Msa0145050:CDS
AAGCAAAATCAGTATGTGAT+AGG 0.350087 1_4:+4648088 Msa0145050:three_prime_UTR
AAAGATCTTAAACGCAATTT+GGG 0.352964 1_4:+4647647 Msa0145050:CDS
ATGGCATTGTTCAGGCTTGT+TGG 0.361487 1_4:+4647732 Msa0145050:CDS
ATTGGTTCATGGCATTGTTC+AGG 0.361946 1_4:+4647724 Msa0145050:CDS
GCAATTTGGGAGGTGATTAG+AGG 0.376553 1_4:+4647660 Msa0145050:CDS
GGTGGGTTCATGAAAGCTTT+GGG 0.397170 1_4:+4647040 Msa0145050:CDS
AAGAGGGATTTGTCATCATA+AGG 0.413128 1_4:-4647409 None:intergenic
ATATTAACAGGGCATAGTTT+GGG 0.421807 1_4:+4647184 Msa0145050:CDS
GTAAAGAGTATAAACAGAAT+TGG 0.425012 1_4:+4647706 Msa0145050:CDS
AATGCAACCACAATCAAGTT+TGG 0.425076 1_4:-4646929 None:intergenic
GGATCACTGGCACTGGGAAA+TGG 0.427709 1_4:-4648019 None:intergenic
TACCTAGAACAAATGGTAGA+AGG 0.433261 1_4:-4647686 None:intergenic
TACACACGTGAATATATATA+AGG 0.435902 1_4:-4648040 None:intergenic
CCGTTGTTAGATCAGTTAGA+AGG 0.435975 1_4:+4647259 Msa0145050:CDS
AACTTCTCGTCTCCAACTCT+TGG 0.437079 1_4:-4647301 None:intergenic
TTCCATTGCACAGCGTCAAA+TGG 0.446017 1_4:-4646965 None:intergenic
TTCATGAATAAATTAATCAA+TGG 0.450241 1_4:+4647989 Msa0145050:three_prime_UTR
CCATGCATCTTACCCACGTT+TGG 0.451550 1_4:-4647019 None:intergenic
TATGTCAATGCTACCCGATT+GGG 0.454189 1_4:+4647795 Msa0145050:CDS
AAATGTGTGGATTCGGTTGA+AGG 0.457325 1_4:-4647881 None:intergenic
TAAGATAAAACCAAGTTGAT+TGG 0.459538 1_4:-4645366 None:intergenic
TGGTGGGTTCATGAAAGCTT+TGG 0.466070 1_4:+4647039 Msa0145050:CDS
GTGAAATGAGCTGGTAGTCC+TGG 0.467415 1_4:-4647765 None:intergenic
TATATAAGGATCACTGGCAC+TGG 0.469673 1_4:-4648026 None:intergenic
TACTCTTTACCTAGAACAAA+TGG 0.472906 1_4:-4647693 None:intergenic
GTATAAACAGAATTGGTTCA+TGG 0.475060 1_4:+4647713 Msa0145050:CDS
TTTATCTTATTGTTTGCAGA+TGG 0.475724 1_4:+4645380 Msa0145050:exon
TTGTCATCATAAGGGATCCT+AGG 0.481249 1_4:-4647400 None:intergenic
GCATAGTTTGGGTGGAGCAT+TGG 0.487894 1_4:+4647195 Msa0145050:CDS
GATCCTAGGAACCATATCAT+TGG 0.488876 1_4:-4647386 None:intergenic
CGTAGTAAGCATATTGATGC+TGG 0.489114 1_4:-4647108 None:intergenic
ACTCCAATGATATGGTTCCT+AGG 0.497236 1_4:+4647383 Msa0145050:CDS
GCAACTGAGAGAAATGTTGA+AGG 0.501125 1_4:+4647141 Msa0145050:CDS
CTCCATTTGACGCTGTGCAA+TGG 0.504884 1_4:+4646963 Msa0145050:CDS
GGAACAGAAATGTGTGGATT+CGG 0.509405 1_4:-4647888 None:intergenic
TGATTATTTACCAATCAACT+TGG 0.510686 1_4:+4645356 Msa0145050:five_prime_UTR
GTTTGTCTAAGTATCCCAAT+CGG 0.510779 1_4:-4647809 None:intergenic
AGAGGGATTTGTCATCATAA+GGG 0.519798 1_4:-4647408 None:intergenic
AATCAAGTTTGGCTCAGACT+TGG 0.525772 1_4:-4646918 None:intergenic
ACATTTGGGCAACCAAGAGT+TGG 0.528038 1_4:+4647289 Msa0145050:CDS
AAACAGACGTTGATATCTCC+TGG 0.531593 1_4:+4646987 Msa0145050:CDS
CAACAGCTTGTACCAAGGGC+AGG 0.538318 1_4:+4647462 Msa0145050:CDS
GACTGAAGTGCTTAAAGAAG+AGG 0.539336 1_4:-4647426 None:intergenic
TGAATATATATAAGGATCAC+TGG 0.542015 1_4:-4648032 None:intergenic
AGCAAAATCAGTATGTGATA+GGG 0.543989 1_4:+4648089 Msa0145050:three_prime_UTR
CACGTTTGGTAGGTCATACC+AGG 0.546792 1_4:-4647005 None:intergenic
TTATGTCAATGCTACCCGAT+TGG 0.551809 1_4:+4647794 Msa0145050:CDS
CTTTGGAAATTAGAAGCTCT+AGG 0.560272 1_4:-4647833 None:intergenic
TGAAATCCAGATTCTGGAGG+AGG 0.561254 1_4:+4647584 Msa0145050:intron
TAATCTGCAGTGAAATGAGC+TGG 0.562925 1_4:-4647774 None:intergenic
CTGGTATGACCTACCAAACG+TGG 0.574732 1_4:+4647006 Msa0145050:CDS
TTTGTCTAAGTATCCCAATC+GGG 0.577174 1_4:-4647808 None:intergenic
ACTGAAGTGCTTAAAGAAGA+GGG 0.583297 1_4:-4647425 None:intergenic
GCATCTTACCCACGTTTGGT+AGG 0.584299 1_4:-4647015 None:intergenic
GATCTTAAACGCAATTTGGG+AGG 0.584510 1_4:+4647650 Msa0145050:CDS
GACTATTAGAGAACGGTGGA+TGG 0.590336 1_4:+4647062 Msa0145050:CDS
TTAACAGGGCATAGTTTGGG+TGG 0.601661 1_4:+4647187 Msa0145050:CDS
ATATAAGGATCACTGGCACT+GGG 0.615996 1_4:-4648025 None:intergenic
CCAAACGTGGGTAAGATGCA+TGG 0.629496 1_4:+4647019 Msa0145050:CDS
GCTTTGGGACTATTAGAGAA+CGG 0.641017 1_4:+4647055 Msa0145050:CDS
ACGTGGGTAAGATGCATGGT+GGG 0.641063 1_4:+4647023 Msa0145050:CDS
GTCTGAGCCAAACTTGATTG+TGG 0.648999 1_4:+4646922 Msa0145050:CDS
TATTGAAATCCAGATTCTGG+AGG 0.663481 1_4:+4647581 Msa0145050:intron
AACGTGGGTAAGATGCATGG+TGG 0.670345 1_4:+4647022 Msa0145050:CDS
CCTTCTAACTGATCTAACAA+CGG 0.677853 1_4:-4647259 None:intergenic
TTGGGACTATTAGAGAACGG+TGG 0.689567 1_4:+4647058 Msa0145050:CDS
ATGCAAAATTCATATTAACA+GGG 0.695453 1_4:+4647173 Msa0145050:CDS
TGGTATGACCTACCAAACGT+GGG 0.704433 1_4:+4647007 Msa0145050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAAGTTTAATTTTTTTG+AGG + chr1_4:4645531-4645550 Msa0145050:intron 10.0%
!!! ATTTAATAGTTTTATGTTAT+GGG - chr1_4:4646311-4646330 None:intergenic 10.0%
!!! TATTTAATAGTTTTATGTTA+TGG - chr1_4:4646312-4646331 None:intergenic 10.0%
!! TAAGGATAAATTAAAATATA+AGG - chr1_4:4646505-4646524 None:intergenic 10.0%
!!! TATTTTAATTTATCCTTAAT+TGG + chr1_4:4646507-4646526 Msa0145050:intron 10.0%
!!! ATTTTAATTTATCCTTAATT+GGG + chr1_4:4646508-4646527 Msa0145050:intron 10.0%
!! ATTTACTCTAAATAAAACTA+TGG - chr1_4:4645327-4645346 None:intergenic 15.0%
!!! AATTATATATTGCATTTTGA+AGG + chr1_4:4645636-4645655 Msa0145050:intron 15.0%
!! AAGGAAAAATTTGATTATAT+AGG + chr1_4:4645655-4645674 Msa0145050:intron 15.0%
!!! TTATAATTTTTTTATGTCGA+AGG + chr1_4:4646107-4646126 Msa0145050:intron 15.0%
!! ATTTCTCTAATTTAAATGAA+GGG + chr1_4:4646675-4646694 Msa0145050:intron 15.0%
!!! ATTTTATCATTTGAAAATCA+TGG - chr1_4:4646777-4646796 None:intergenic 15.0%
!!! TGATTTTCAAATGATAAAAT+TGG + chr1_4:4646777-4646796 Msa0145050:intron 15.0%
!!! GATTTTCAAATGATAAAATT+GGG + chr1_4:4646778-4646797 Msa0145050:intron 15.0%
!! AACATCATAATGTAAAAAAA+TGG - chr1_4:4647912-4647931 None:intergenic 15.0%
!! TTCATGAATAAATTAATCAA+TGG + chr1_4:4647989-4648008 Msa0145050:three_prime_UTR 15.0%
!! GTATATCTTACAAATTATGA+AGG - chr1_4:4645458-4645477 None:intergenic 20.0%
!!! GGAAAAATTCTAAAATTATG+AGG - chr1_4:4645894-4645913 None:intergenic 20.0%
!! TCAATATATAACACTTATTG+TGG + chr1_4:4646158-4646177 Msa0145050:intron 20.0%
!! GTGTTTATAATATTATTGAC+AGG + chr1_4:4646333-4646352 Msa0145050:intron 20.0%
!! CATTTCTCTAATTTAAATGA+AGG + chr1_4:4646674-4646693 Msa0145050:intron 20.0%
!! ATGCAAAATTCATATTAACA+GGG + chr1_4:4647173-4647192 Msa0145050:CDS 20.0%
! TGATTATTTACCAATCAACT+TGG + chr1_4:4645356-4645375 Msa0145050:five_prime_UTR 25.0%
!!! TAAGATAAAACCAAGTTGAT+TGG - chr1_4:4645369-4645388 None:intergenic 25.0%
! TTTATCTTATTGTTTGCAGA+TGG + chr1_4:4645380-4645399 Msa0145050:exon 25.0%
! ATCTTACAAATTATGAAGGA+TGG - chr1_4:4645454-4645473 None:intergenic 25.0%
! TTTCCATCAATGTAAATGTT+AGG - chr1_4:4645805-4645824 None:intergenic 25.0%
!!! TATGATGATGGCAAATTATA+TGG - chr1_4:4645915-4645934 None:intergenic 25.0%
!!! TATTTTTCCTTTCAAGTTGA+TGG + chr1_4:4646032-4646051 Msa0145050:intron 25.0%
! ATGTCGAAGGAAAAAAAATA+TGG + chr1_4:4646120-4646139 Msa0145050:intron 25.0%
! TGAAAAAGTCAAATATGTGT+AGG - chr1_4:4646368-4646387 None:intergenic 25.0%
! TATAAACTAAACATGTCACA+CGG - chr1_4:4646447-4646466 None:intergenic 25.0%
! TAAAATATAAGGTCAATGAG+AGG - chr1_4:4646494-4646513 None:intergenic 25.0%
! AATGTTAAAGAATGTCCTTA+GGG - chr1_4:4646658-4646677 None:intergenic 25.0%
! AAATGTTAAAGAATGTCCTT+AGG - chr1_4:4646659-4646678 None:intergenic 25.0%
! ATCATTTGAAAATCATGGAA+GGG - chr1_4:4646772-4646791 None:intergenic 25.0%
! TATCATTTGAAAATCATGGA+AGG - chr1_4:4646773-4646792 None:intergenic 25.0%
! AATGATAAAATTGGGATATC+TGG + chr1_4:4646786-4646805 Msa0145050:intron 25.0%
! CTTCTTTCATCAATTTCTTT+AGG - chr1_4:4647088-4647107 None:intergenic 25.0%
! AGAAATGTTGAAGGAAAATA+AGG + chr1_4:4647150-4647169 Msa0145050:CDS 25.0%
! GATGCAAAATTCATATTAAC+AGG + chr1_4:4647172-4647191 Msa0145050:CDS 25.0%
!!! TTAGAAGGTGTTTATACATT+TGG + chr1_4:4647274-4647293 Msa0145050:CDS 25.0%
!!! TAGAAGGTGTTTATACATTT+GGG + chr1_4:4647275-4647294 Msa0145050:CDS 25.0%
! ATATGTTTACTCCAATGATA+TGG + chr1_4:4647375-4647394 Msa0145050:CDS 25.0%
! AAAGAGAAATAGTTCTTGTT+TGG - chr1_4:4647612-4647631 None:intergenic 25.0%
!!! AGAACTATTTCTCTTTGTTT+TGG + chr1_4:4647616-4647635 Msa0145050:CDS 25.0%
!!! GAACTATTTCTCTTTGTTTT+GGG + chr1_4:4647617-4647636 Msa0145050:CDS 25.0%
! AAAGATCTTAAACGCAATTT+GGG + chr1_4:4647647-4647666 Msa0145050:CDS 25.0%
!! GTAAAGAGTATAAACAGAAT+TGG + chr1_4:4647706-4647725 Msa0145050:CDS 25.0%
! TGAATATATATAAGGATCAC+TGG - chr1_4:4648035-4648054 None:intergenic 25.0%
! TACACACGTGAATATATATA+AGG - chr1_4:4648043-4648062 None:intergenic 25.0%
!! TGCTTCAATGATACAAATTT+TGG - chr1_4:4648073-4648092 None:intergenic 25.0%
! TTGTTTGCAGATGGAATTTT+TGG + chr1_4:4645389-4645408 Msa0145050:exon 30.0%
! TGTTTGCAGATGGAATTTTT+GGG + chr1_4:4645390-4645409 Msa0145050:exon 30.0%
GATATACGAACGTAGAAATT+TGG + chr1_4:4645471-4645490 Msa0145050:intron 30.0%
ATGTTCTCAAAAGTCAACTT+AGG - chr1_4:4645568-4645587 None:intergenic 30.0%
GAAAATAATGCAATGCTACT+AGG + chr1_4:4645722-4645741 Msa0145050:intron 30.0%
CATCAATGTAAATGTTAGGT+GGG - chr1_4:4645801-4645820 None:intergenic 30.0%
TCAGAATGTGAATATGATGA+TGG - chr1_4:4645927-4645946 None:intergenic 30.0%
! GTCATTCTCAACATCAATTT+TGG - chr1_4:4645969-4645988 None:intergenic 30.0%
TTAACTACCATCAACTTGAA+AGG - chr1_4:4646042-4646061 None:intergenic 30.0%
ATGTCACATGTATAGAGATA+TGG - chr1_4:4646403-4646422 None:intergenic 30.0%
TTGTTAGCATAACCCAATTA+AGG - chr1_4:4646523-4646542 None:intergenic 30.0%
CAAAAGTAGTAAGTTTGCAT+TGG + chr1_4:4646573-4646592 Msa0145050:intron 30.0%
!! CTTTTGTAGACTCCATTTTT+TGG - chr1_4:4646880-4646899 None:intergenic 30.0%
ATATTAACAGGGCATAGTTT+GGG + chr1_4:4647184-4647203 Msa0145050:CDS 30.0%
TTTGCTTTACTTGTCTAGAA+AGG + chr1_4:4647534-4647553 Msa0145050:intron 30.0%
ATGTATTGAAATCCAGATTC+TGG + chr1_4:4647578-4647597 Msa0145050:intron 30.0%
! CAAATTGCGTTTAAGATCTT+TGG - chr1_4:4647648-4647667 None:intergenic 30.0%
CAAAGATCTTAAACGCAATT+TGG + chr1_4:4647646-4647665 Msa0145050:CDS 30.0%
TACTCTTTACCTAGAACAAA+TGG - chr1_4:4647696-4647715 None:intergenic 30.0%
! GTATAAACAGAATTGGTTCA+TGG + chr1_4:4647713-4647732 Msa0145050:CDS 30.0%
AAAAATGGAACAGAAATGTG+TGG - chr1_4:4647897-4647916 None:intergenic 30.0%
AAGCAAAATCAGTATGTGAT+AGG + chr1_4:4648088-4648107 Msa0145050:three_prime_UTR 30.0%
AGCAAAATCAGTATGTGATA+GGG + chr1_4:4648089-4648108 Msa0145050:three_prime_UTR 30.0%
! GTTTGCAGATGGAATTTTTG+GGG + chr1_4:4645391-4645410 Msa0145050:exon 35.0%
ACAACGTAAGCACATGTATT+TGG + chr1_4:4645602-4645621 Msa0145050:intron 35.0%
CAACGTAAGCACATGTATTT+GGG + chr1_4:4645603-4645622 Msa0145050:intron 35.0%
AACGTAAGCACATGTATTTG+GGG + chr1_4:4645604-4645623 Msa0145050:intron 35.0%
TTTATACCAGCATTGTTTCG+TGG + chr1_4:4645753-4645772 Msa0145050:intron 35.0%
CCATCAATGTAAATGTTAGG+TGG - chr1_4:4645802-4645821 None:intergenic 35.0%
CCACCTAACATTTACATTGA+TGG + chr1_4:4645799-4645818 Msa0145050:intron 35.0%
AGTCAAATATGTGTAGGACT+AGG - chr1_4:4646362-4646381 None:intergenic 35.0%
AAAGAATGTCCTTAGGGTAT+TGG - chr1_4:4646652-4646671 None:intergenic 35.0%
!!! CCATTTTTTGGTAATCTGCA+TGG - chr1_4:4646868-4646887 None:intergenic 35.0%
CCATGCAGATTACCAAAAAA+TGG + chr1_4:4646865-4646884 Msa0145050:intron 35.0%
AATGCAACCACAATCAAGTT+TGG - chr1_4:4646932-4646951 None:intergenic 35.0%
TTGATTGTGGTTGCATTTAG+AGG + chr1_4:4646935-4646954 Msa0145050:CDS 35.0%
CATATTAACAGGGCATAGTT+TGG + chr1_4:4647183-4647202 Msa0145050:CDS 35.0%
CCTTCTAACTGATCTAACAA+CGG - chr1_4:4647262-4647281 None:intergenic 35.0%
AGAGGGATTTGTCATCATAA+GGG - chr1_4:4647411-4647430 None:intergenic 35.0%
AAGAGGGATTTGTCATCATA+AGG - chr1_4:4647412-4647431 None:intergenic 35.0%
! ACTGAAGTGCTTAAAGAAGA+GGG - chr1_4:4647428-4647447 None:intergenic 35.0%
AAGCTGTTGAAAAACAGACA+AGG - chr1_4:4647451-4647470 None:intergenic 35.0%
!! TTTTTCAACAGCTTGTACCA+AGG + chr1_4:4647457-4647476 Msa0145050:CDS 35.0%
! TTTTCAACAGCTTGTACCAA+GGG + chr1_4:4647458-4647477 Msa0145050:CDS 35.0%
! TTAGATTTTATACCTGCCCT+TGG - chr1_4:4647477-4647496 None:intergenic 35.0%
TATTGAAATCCAGATTCTGG+AGG + chr1_4:4647581-4647600 Msa0145050:intron 35.0%
TTCCTTCTACCATTTGTTCT+AGG + chr1_4:4647684-4647703 Msa0145050:CDS 35.0%
TACCTAGAACAAATGGTAGA+AGG - chr1_4:4647689-4647708 None:intergenic 35.0%
! CTTGTTGGATTGATAATTCC+AGG + chr1_4:4647747-4647766 Msa0145050:CDS 35.0%
TTTGTCTAAGTATCCCAATC+GGG - chr1_4:4647811-4647830 None:intergenic 35.0%
GTTTGTCTAAGTATCCCAAT+CGG - chr1_4:4647812-4647831 None:intergenic 35.0%
! CTTTGGAAATTAGAAGCTCT+AGG - chr1_4:4647836-4647855 None:intergenic 35.0%
GCTTAGACATTAGTCATCTT+TGG - chr1_4:4647853-4647872 None:intergenic 35.0%
!!! TTTTGGGGCTATACAGCTTT+TGG + chr1_4:4645406-4645425 Msa0145050:CDS 40.0%
AGGTGGGAAACCAATTGTTA+GGG - chr1_4:4645785-4645804 None:intergenic 40.0%
TAGGTGGGAAACCAATTGTT+AGG - chr1_4:4645786-4645805 None:intergenic 40.0%
TCCTCTTTACCAATACCCTA+AGG + chr1_4:4646640-4646659 Msa0145050:intron 40.0%
!! TCCTTAGGGTATTGGTAAAG+AGG - chr1_4:4646644-4646663 None:intergenic 40.0%
! AATCAAGTTTGGCTCAGACT+TGG - chr1_4:4646921-4646940 None:intergenic 40.0%
AAACAGACGTTGATATCTCC+TGG + chr1_4:4646987-4647006 Msa0145050:CDS 40.0%
!! GCTTTGGGACTATTAGAGAA+CGG + chr1_4:4647055-4647074 Msa0145050:CDS 40.0%
CGTAGTAAGCATATTGATGC+TGG - chr1_4:4647111-4647130 None:intergenic 40.0%
GCAACTGAGAGAAATGTTGA+AGG + chr1_4:4647141-4647160 Msa0145050:CDS 40.0%
CCGTTGTTAGATCAGTTAGA+AGG + chr1_4:4647259-4647278 Msa0145050:CDS 40.0%
ACTCCAATGATATGGTTCCT+AGG + chr1_4:4647383-4647402 Msa0145050:CDS 40.0%
GATCCTAGGAACCATATCAT+TGG - chr1_4:4647389-4647408 None:intergenic 40.0%
TTGTCATCATAAGGGATCCT+AGG - chr1_4:4647403-4647422 None:intergenic 40.0%
! GACTGAAGTGCTTAAAGAAG+AGG - chr1_4:4647429-4647448 None:intergenic 40.0%
GATCTTAAACGCAATTTGGG+AGG + chr1_4:4647650-4647669 Msa0145050:CDS 40.0%
! ATTGGTTCATGGCATTGTTC+AGG + chr1_4:4647724-4647743 Msa0145050:CDS 40.0%
TAATCTGCAGTGAAATGAGC+TGG - chr1_4:4647777-4647796 None:intergenic 40.0%
TTATGTCAATGCTACCCGAT+TGG + chr1_4:4647794-4647813 Msa0145050:CDS 40.0%
TATGTCAATGCTACCCGATT+GGG + chr1_4:4647795-4647814 Msa0145050:CDS 40.0%
! AAATGTGTGGATTCGGTTGA+AGG - chr1_4:4647884-4647903 None:intergenic 40.0%
GGAACAGAAATGTGTGGATT+CGG - chr1_4:4647891-4647910 None:intergenic 40.0%
ATATAAGGATCACTGGCACT+GGG - chr1_4:4648028-4648047 None:intergenic 40.0%
TATATAAGGATCACTGGCAC+TGG - chr1_4:4648029-4648048 None:intergenic 40.0%
!! GGGCTATACAGCTTTTGGAA+CGG + chr1_4:4645411-4645430 Msa0145050:CDS 45.0%
CAGATTCCACGAAACAATGC+TGG - chr1_4:4645762-4645781 None:intergenic 45.0%
GTGGAATCTGCCCTAACAAT+TGG + chr1_4:4645772-4645791 Msa0145050:intron 45.0%
GTCTGAGCCAAACTTGATTG+TGG + chr1_4:4646922-4646941 Msa0145050:CDS 45.0%
TTCCATTGCACAGCGTCAAA+TGG - chr1_4:4646968-4646987 None:intergenic 45.0%
TGGTATGACCTACCAAACGT+GGG + chr1_4:4647007-4647026 Msa0145050:CDS 45.0%
!! TGGTGGGTTCATGAAAGCTT+TGG + chr1_4:4647039-4647058 Msa0145050:CDS 45.0%
! GGTGGGTTCATGAAAGCTTT+GGG + chr1_4:4647040-4647059 Msa0145050:CDS 45.0%
TTGGGACTATTAGAGAACGG+TGG + chr1_4:4647058-4647077 Msa0145050:CDS 45.0%
GACTATTAGAGAACGGTGGA+TGG + chr1_4:4647062-4647081 Msa0145050:CDS 45.0%
TTAACAGGGCATAGTTTGGG+TGG + chr1_4:4647187-4647206 Msa0145050:CDS 45.0%
ACATTTGGGCAACCAAGAGT+TGG + chr1_4:4647289-4647308 Msa0145050:CDS 45.0%
AACTTCTCGTCTCCAACTCT+TGG - chr1_4:4647304-4647323 None:intergenic 45.0%
AGAGTTGGAGACGAGAAGTT+TGG + chr1_4:4647304-4647323 Msa0145050:CDS 45.0%
! TGAAATCCAGATTCTGGAGG+AGG + chr1_4:4647584-4647603 Msa0145050:intron 45.0%
GCAATTTGGGAGGTGATTAG+AGG + chr1_4:4647660-4647679 Msa0145050:CDS 45.0%
ATGGCATTGTTCAGGCTTGT+TGG + chr1_4:4647732-4647751 Msa0145050:CDS 45.0%
!! AAAAAAATTAAACTTATTAT+AGG - chr1_4:4645530-4645549 None:intergenic 5.0%
CTCCATTTGACGCTGTGCAA+TGG + chr1_4:4646963-4646982 Msa0145050:CDS 50.0%
CACGTTTGGTAGGTCATACC+AGG - chr1_4:4647008-4647027 None:intergenic 50.0%
CTGGTATGACCTACCAAACG+TGG + chr1_4:4647006-4647025 Msa0145050:CDS 50.0%
GCATCTTACCCACGTTTGGT+AGG - chr1_4:4647018-4647037 None:intergenic 50.0%
CCATGCATCTTACCCACGTT+TGG - chr1_4:4647022-4647041 None:intergenic 50.0%
CCAAACGTGGGTAAGATGCA+TGG + chr1_4:4647019-4647038 Msa0145050:CDS 50.0%
AACGTGGGTAAGATGCATGG+TGG + chr1_4:4647022-4647041 Msa0145050:CDS 50.0%
ACGTGGGTAAGATGCATGGT+GGG + chr1_4:4647023-4647042 Msa0145050:CDS 50.0%
GCATAGTTTGGGTGGAGCAT+TGG + chr1_4:4647195-4647214 Msa0145050:CDS 50.0%
GTGAAATGAGCTGGTAGTCC+TGG - chr1_4:4647768-4647787 None:intergenic 50.0%
CAACAGCTTGTACCAAGGGC+AGG + chr1_4:4647462-4647481 Msa0145050:CDS 55.0%
TTGGCTCCTCCTCCAGAATC+TGG - chr1_4:4647593-4647612 None:intergenic 55.0%
! GGATCACTGGCACTGGGAAA+TGG - chr1_4:4648022-4648041 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 4645287 4648131 4645287 ID=Msa0145050;Name=Msa0145050
chr1_4 mRNA 4645287 4648131 4645287 ID=Msa0145050-mRNA-1;Parent=Msa0145050;Name=Msa0145050-mRNA-1;_AED=0.01;_eAED=0.01;_QI=112|1|1|1|0.5|0.66|3|268|304
chr1_4 exon 4645287 4645432 4645287 ID=Msa0145050-mRNA-1:exon:1933;Parent=Msa0145050-mRNA-1
chr1_4 exon 4646873 4647483 4646873 ID=Msa0145050-mRNA-1:exon:1934;Parent=Msa0145050-mRNA-1
chr1_4 exon 4647594 4648131 4647594 ID=Msa0145050-mRNA-1:exon:1935;Parent=Msa0145050-mRNA-1
chr1_4 five_prime_UTR 4645287 4645398 4645287 ID=Msa0145050-mRNA-1:five_prime_utr;Parent=Msa0145050-mRNA-1
chr1_4 CDS 4645399 4645432 4645399 ID=Msa0145050-mRNA-1:cds;Parent=Msa0145050-mRNA-1
chr1_4 CDS 4646873 4647483 4646873 ID=Msa0145050-mRNA-1:cds;Parent=Msa0145050-mRNA-1
chr1_4 CDS 4647594 4647863 4647594 ID=Msa0145050-mRNA-1:cds;Parent=Msa0145050-mRNA-1
chr1_4 three_prime_UTR 4647864 4648131 4647864 ID=Msa0145050-mRNA-1:three_prime_utr;Parent=Msa0145050-mRNA-1
Gene Sequence

>Msa0145050

ATGGAATTTTTGGGGCTATACAGCTTTTGGAACGATTACCAAAAAATGGAGTCTACAAAAGCTATGATAGTGAAAGATACCAAGTCTGAGCCAAACTTGATTGTGGTTGCATTTAGAGGCACAACTCCATTTGACGCTGTGCAATGGAAAACAGACGTTGATATCTCCTGGTATGACCTACCAAACGTGGGTAAGATGCATGGTGGGTTCATGAAAGCTTTGGGACTATTAGAGAACGGTGGATGGCCTAAAGAAATTGATGAAAGAAGCCAGCATCAATATGCTTACTACGCAATTAGAGAGCAACTGAGAGAAATGTTGAAGGAAAATAAGGATGCAAAATTCATATTAACAGGGCATAGTTTGGGTGGAGCATTGGCTATTCTGTTTGTCGCAATGCTAATATTTCATGATGAAGAACCGTTGTTAGATCAGTTAGAAGGTGTTTATACATTTGGGCAACCAAGAGTTGGAGACGAGAAGTTTGGAGAGTTCATGAAAAGCAAGTTGAGAGAGTATGATGTGAAGTACTTTAGATATGTTTACTCCAATGATATGGTTCCTAGGATCCCTTATGATGACAAATCCCTCTTCTTTAAGCACTTCAGTCCTTGTCTGTTTTTCAACAGCTTGTACCAAGGGCAGATTCTGGAGGAGGAGCCAAACAAGAACTATTTCTCTTTGTTTTGGGTGATACCAAAGATCTTAAACGCAATTTGGGAGGTGATTAGAGGTTTCCTTCTACCATTTGTTCTAGGTAAAGAGTATAAACAGAATTGGTTCATGGCATTGTTCAGGCTTGTTGGATTGATAATTCCAGGACTACCAGCTCATTTCACTGCAGATTATGTCAATGCTACCCGATTGGGATACTTAGACAAACACCTAGAGCTTCTAATTTCCAAAGATGACTAA

Protein sequence

>Msa0145050

MEFLGLYSFWNDYQKMESTKAMIVKDTKSEPNLIVVAFRGTTPFDAVQWKTDVDISWYDLPNVGKMHGGFMKALGLLENGGWPKEIDERSQHQYAYYAIREQLREMLKENKDAKFILTGHSLGGALAILFVAMLIFHDEEPLLDQLEGVYTFGQPRVGDEKFGEFMKSKLREYDVKYFRYVYSNDMVPRIPYDDKSLFFKHFSPCLFFNSLYQGQILEEEPNKNYFSLFWVIPKILNAIWEVIRGFLLPFVLGKEYKQNWFMALFRLVGLIIPGLPAHFTADYVNATRLGYLDKHLELLISKDD*