AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0390200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0390200 MtrunA17_Chr1g0164301 93.307 254 17 0 1 254 1 254 1.82e-168 465
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0390200 AT5G08240.1 48.235 85 39 2 169 252 176 256 7.47e-23 94.4
Msa0390200 AT5G23160.1 32.642 193 85 7 79 252 104 270 1.84e-20 88.2

Find 52 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTAGTGATAATGATATTT+TGG 0.090980 3_2:-844615 Msa0390200:CDS
AATTAAGATTCTTGTGATTT+TGG 0.103432 3_2:-844348 Msa0390200:three_prime_UTR
TCATTTGTTGAAGGTTTATT+TGG 0.156691 3_2:+845935 None:intergenic
ACCTGTGTTGGTGTATAATA+AGG 0.196392 3_2:+845671 None:intergenic
AGCTTCAAGCGGCACCGTTT+TGG 0.297229 3_2:+845817 None:intergenic
GTGATTATGGAAGGACTTCT+TGG 0.303559 3_2:-844442 Msa0390200:CDS
ACCCTTCGTTCTTGTCGTTT+TGG 0.306850 3_2:+844733 None:intergenic
CACTAGGGTCACACCTAGTA+TGG 0.331968 3_2:+844630 None:intergenic
CGGAATTGACGGTGGAGAAT+TGG 0.382165 3_2:+845721 None:intergenic
TCTGTAATAATGTCATCAAT+TGG 0.442337 3_2:+844793 None:intergenic
ACCGTCAATTCCGCCGTCTA+CGG 0.455743 3_2:-845711 Msa0390200:CDS
TTTGATGAATCATTTGTTGA+AGG 0.456259 3_2:+845926 None:intergenic
CCTGTGTTGGTGTATAATAA+GGG 0.458661 3_2:+845672 None:intergenic
CAAAGCAAAAGAAAAGTAGT+TGG 0.462094 3_2:-845880 Msa0390200:CDS
AGTATGGACATTCCAACTAT+AGG 0.463810 3_2:+844646 None:intergenic
CCGTCTACGGTGGTGCTCCC+CGG 0.471029 3_2:-845698 Msa0390200:CDS
AGTTCGTATGATCCTATAGT+TGG 0.471500 3_2:-844658 Msa0390200:CDS
CCATTCTATGTACTTCAGCT+TGG 0.478889 3_2:-844579 Msa0390200:CDS
ACCGTAGACGGCGGAATTGA+CGG 0.482737 3_2:+845710 None:intergenic
TGATTATGGAAGGACTTCTT+GGG 0.486920 3_2:-844441 Msa0390200:CDS
TGATCAAACAACCCACCTAC+TGG 0.491103 3_2:+844315 None:intergenic
GGTGTATAATAAGGGGTGCC+GGG 0.507092 3_2:+845680 None:intergenic
TAGTGGTGTTGGAAATTATG+AGG 0.517184 3_2:-844530 Msa0390200:CDS
TGGTGTATAATAAGGGGTGC+CGG 0.525086 3_2:+845679 None:intergenic
GGTTAAGGTAGGCCAGTAGG+TGG 0.528338 3_2:-844327 Msa0390200:three_prime_UTR
CCCAAAATATCATTATCACT+AGG 0.532345 3_2:+844614 None:intergenic
ATAGTTGGAATGTCCATACT+AGG 0.535327 3_2:-844643 Msa0390200:CDS
CCAAGCTGAAGTACATAGAA+TGG 0.538851 3_2:+844579 None:intergenic
TGTTTGATCATGTCGTCTGT+TGG 0.539282 3_2:-844302 Msa0390200:three_prime_UTR
CCGGGGAGCACCACCGTAGA+CGG 0.542653 3_2:+845698 None:intergenic
TTGATCATGTCGTCTGTTGG+TGG 0.545223 3_2:-844299 Msa0390200:three_prime_UTR
TGTTTGGTTCAGACAAGGCA+TGG 0.557886 3_2:-844817 Msa0390200:intron
GACCAAAACGACAAGAACGA+AGG 0.559782 3_2:-844735 Msa0390200:CDS
AATGAAGTCAACGTCCAAAA+CGG 0.561793 3_2:-845831 Msa0390200:CDS
CCAAAATATCATTATCACTA+GGG 0.576254 3_2:+844615 None:intergenic
TTTGGTTAAGGTAGGCCAGT+AGG 0.582540 3_2:-844330 Msa0390200:three_prime_UTR
TCTCTCATTATTCAAAGTCA+CGG 0.583059 3_2:-845790 Msa0390200:CDS
GTTAAGGTAGGCCAGTAGGT+GGG 0.593861 3_2:-844326 Msa0390200:three_prime_UTR
GTCAATTCCGCCGTCTACGG+TGG 0.605008 3_2:-845708 Msa0390200:CDS
ATATAGATACATACCTGTGT+TGG 0.616378 3_2:+845659 None:intergenic
ATTGACGGTGGAGAATTGGT+TGG 0.618047 3_2:+845725 None:intergenic
ACCAAAACGACAAGAACGAA+GGG 0.618443 3_2:-844734 Msa0390200:CDS
GTTGGAAATTATGAGGAAGA+TGG 0.618802 3_2:-844523 Msa0390200:CDS
GTGTATAATAAGGGGTGCCG+GGG 0.641424 3_2:+845681 None:intergenic
CCCTTATTATACACCAACAC+AGG 0.642258 3_2:-845672 Msa0390200:intron
TGAGAGAATGAAGCTTCAAG+CGG 0.647573 3_2:+845806 None:intergenic
ACAGAAGACACACATGAACA+AGG 0.659785 3_2:-844775 Msa0390200:CDS
GGGAGCACCACCGTAGACGG+CGG 0.676555 3_2:+845701 None:intergenic
CTGTGTTGGTGTATAATAAG+GGG 0.699987 3_2:+845673 None:intergenic
ACACCACTATTTCTAAAACG+TGG 0.710690 3_2:+844544 None:intergenic
GTAGACGGCGGAATTGACGG+TGG 0.731544 3_2:+845713 None:intergenic
CTTCTTGGGAGAAATAATCG+AGG 0.735972 3_2:-844427 Msa0390200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAATTATGTTAACA+TGG - chr3_2:844657-844676 Msa0390200:CDS 10.0%
!!! TTTTAAAAAAATGAATTTCT+TGG + chr3_2:845028-845047 None:intergenic 10.0%
!!! AAGTATAATTTTTTTTTTGA+AGG - chr3_2:845081-845100 Msa0390200:intron 10.0%
!! AATTAAAAGTAATTAAACAA+AGG + chr3_2:845161-845180 None:intergenic 10.0%
!! TTTATGAAAAAAAATCAAAA+TGG + chr3_2:845215-845234 None:intergenic 10.0%
!! TAAAAAAAATTATGTTAACA+TGG - chr3_2:844657-844676 Msa0390200:CDS 10.0%
!!! TTTTAAAAAAATGAATTTCT+TGG + chr3_2:845028-845047 None:intergenic 10.0%
!!! AAGTATAATTTTTTTTTTGA+AGG - chr3_2:845081-845100 Msa0390200:intron 10.0%
!! AATTAAAAGTAATTAAACAA+AGG + chr3_2:845161-845180 None:intergenic 10.0%
!! TTTATGAAAAAAAATCAAAA+TGG + chr3_2:845215-845234 None:intergenic 10.0%
!! TATTATTAAATTGACTACAA+TGG - chr3_2:844766-844785 Msa0390200:CDS 15.0%
!! ATTATTAAATTGACTACAAT+GGG - chr3_2:844767-844786 Msa0390200:CDS 15.0%
!!! TTATTTTGTTTGTTAATGTT+TGG - chr3_2:845359-845378 Msa0390200:intron 15.0%
!! TATTATTAAATTGACTACAA+TGG - chr3_2:844766-844785 Msa0390200:CDS 15.0%
!! ATTATTAAATTGACTACAAT+GGG - chr3_2:844767-844786 Msa0390200:CDS 15.0%
!!! TTATTTTGTTTGTTAATGTT+TGG - chr3_2:845359-845378 Msa0390200:intron 15.0%
!!! AAAATCATGAACTTGTTAAT+AGG + chr3_2:844573-844592 None:intergenic 20.0%
!!! TTAACAAGTTCATGATTTTT+AGG - chr3_2:844574-844593 Msa0390200:CDS 20.0%
!!! TAACAAGTTCATGATTTTTA+GGG - chr3_2:844575-844594 Msa0390200:CDS 20.0%
!!! TCAACTATACTTTCTTTTTT+TGG - chr3_2:844867-844886 Msa0390200:intron 20.0%
!!! GTTTTTTTTTCTTTTTCTGA+TGG + chr3_2:844953-844972 None:intergenic 20.0%
!!! GTCATTTTTTGACATTATTT+TGG + chr3_2:845697-845716 None:intergenic 20.0%
!! GTATAAGAAAAAAGTGATTA+TGG - chr3_2:845737-845756 Msa0390200:CDS 20.0%
!! TTACTCAAAAAAAGGAAAAA+AGG - chr3_2:845817-845836 Msa0390200:CDS 20.0%
!! TACTCAAAAAAAGGAAAAAA+GGG - chr3_2:845818-845837 Msa0390200:CDS 20.0%
!!! AATTAAGATTCTTGTGATTT+TGG - chr3_2:845844-845863 Msa0390200:CDS 20.0%
!!! AAAATCATGAACTTGTTAAT+AGG + chr3_2:844573-844592 None:intergenic 20.0%
!!! TTAACAAGTTCATGATTTTT+AGG - chr3_2:844574-844593 Msa0390200:CDS 20.0%
!!! TAACAAGTTCATGATTTTTA+GGG - chr3_2:844575-844594 Msa0390200:CDS 20.0%
!!! TCAACTATACTTTCTTTTTT+TGG - chr3_2:844867-844886 Msa0390200:intron 20.0%
!!! GTTTTTTTTTCTTTTTCTGA+TGG + chr3_2:844953-844972 None:intergenic 20.0%
!!! GTCATTTTTTGACATTATTT+TGG + chr3_2:845697-845716 None:intergenic 20.0%
!! GTATAAGAAAAAAGTGATTA+TGG - chr3_2:845737-845756 Msa0390200:CDS 20.0%
!! TTACTCAAAAAAAGGAAAAA+AGG - chr3_2:845817-845836 Msa0390200:CDS 20.0%
!! TACTCAAAAAAAGGAAAAAA+GGG - chr3_2:845818-845837 Msa0390200:CDS 20.0%
!!! AATTAAGATTCTTGTGATTT+TGG - chr3_2:845844-845863 Msa0390200:CDS 20.0%
!!! AGATTTTGAGTTTTTGGTTT+TGG + chr3_2:844198-844217 None:intergenic 25.0%
!!! GGTTTTAGATTTTGAGTTTT+TGG + chr3_2:844204-844223 None:intergenic 25.0%
! AAAGCAACATAGAAAAATAG+AGG + chr3_2:844225-844244 None:intergenic 25.0%
!! TCATTTGTTGAAGGTTTATT+TGG + chr3_2:844260-844279 None:intergenic 25.0%
!! TTTGATGAATCATTTGTTGA+AGG + chr3_2:844269-844288 None:intergenic 25.0%
! AGTATTGTGTAGCTTAATTA+AGG - chr3_2:844603-844622 Msa0390200:CDS 25.0%
! AAAATTTACTACTTCAAGTG+TGG + chr3_2:844740-844759 None:intergenic 25.0%
!! ATTTGTATTTTACCTAAGGA+AGG + chr3_2:844818-844837 None:intergenic 25.0%
!! TCGTATTTGTATTTTACCTA+AGG + chr3_2:844822-844841 None:intergenic 25.0%
! GAAAGACATACATTTAAGAA+GGG + chr3_2:844845-844864 None:intergenic 25.0%
! AGAAAGACATACATTTAAGA+AGG + chr3_2:844846-844865 None:intergenic 25.0%
! TCTGTAATAATGTCATCAAT+TGG + chr3_2:845402-845421 None:intergenic 25.0%
! CCAAAATATCATTATCACTA+GGG + chr3_2:845580-845599 None:intergenic 25.0%
!!! CCTAGTGATAATGATATTTT+GGG - chr3_2:845578-845597 Msa0390200:intron 25.0%
!!! CTAGTGATAATGATATTTTG+GGG - chr3_2:845579-845598 Msa0390200:intron 25.0%
! AATAATGTCAAAAAATGACG+TGG - chr3_2:845698-845717 Msa0390200:CDS 25.0%
! AAGAAAAAAGTGATTATGGA+AGG - chr3_2:845741-845760 Msa0390200:CDS 25.0%
!! TTCTTGTGTTACTCAAAAAA+AGG - chr3_2:845809-845828 Msa0390200:CDS 25.0%
!!! AGATTTTGAGTTTTTGGTTT+TGG + chr3_2:844198-844217 None:intergenic 25.0%
!!! GGTTTTAGATTTTGAGTTTT+TGG + chr3_2:844204-844223 None:intergenic 25.0%
! AAAGCAACATAGAAAAATAG+AGG + chr3_2:844225-844244 None:intergenic 25.0%
!! TCATTTGTTGAAGGTTTATT+TGG + chr3_2:844260-844279 None:intergenic 25.0%
!! TTTGATGAATCATTTGTTGA+AGG + chr3_2:844269-844288 None:intergenic 25.0%
! AGTATTGTGTAGCTTAATTA+AGG - chr3_2:844603-844622 Msa0390200:CDS 25.0%
! AAAATTTACTACTTCAAGTG+TGG + chr3_2:844740-844759 None:intergenic 25.0%
!! ATTTGTATTTTACCTAAGGA+AGG + chr3_2:844818-844837 None:intergenic 25.0%
!! TCGTATTTGTATTTTACCTA+AGG + chr3_2:844822-844841 None:intergenic 25.0%
! GAAAGACATACATTTAAGAA+GGG + chr3_2:844845-844864 None:intergenic 25.0%
! AGAAAGACATACATTTAAGA+AGG + chr3_2:844846-844865 None:intergenic 25.0%
! TCTGTAATAATGTCATCAAT+TGG + chr3_2:845402-845421 None:intergenic 25.0%
! CCAAAATATCATTATCACTA+GGG + chr3_2:845580-845599 None:intergenic 25.0%
!!! CCTAGTGATAATGATATTTT+GGG - chr3_2:845578-845597 Msa0390200:intron 25.0%
!!! CTAGTGATAATGATATTTTG+GGG - chr3_2:845579-845598 Msa0390200:intron 25.0%
! AATAATGTCAAAAAATGACG+TGG - chr3_2:845698-845717 Msa0390200:CDS 25.0%
! AAGAAAAAAGTGATTATGGA+AGG - chr3_2:845741-845760 Msa0390200:CDS 25.0%
!! TTCTTGTGTTACTCAAAAAA+AGG - chr3_2:845809-845828 Msa0390200:CDS 25.0%
!!! CTTTTCTTTTGCTTTGGAAT+AGG + chr3_2:844308-844327 None:intergenic 30.0%
!! CAACTACTTTTCTTTTGCTT+TGG + chr3_2:844314-844333 None:intergenic 30.0%
CAAAGCAAAAGAAAAGTAGT+TGG - chr3_2:844312-844331 Msa0390200:three_prime_UTR 30.0%
!!! AGAAAAGTAGTTGGTTTTCA+TGG - chr3_2:844321-844340 Msa0390200:three_prime_UTR 30.0%
TCTCTCATTATTCAAAGTCA+CGG - chr3_2:844402-844421 Msa0390200:exon 30.0%
ATATAGATACATACCTGTGT+TGG + chr3_2:844536-844555 None:intergenic 30.0%
!! TCATGAACTTGTTAATAGGT+TGG + chr3_2:844569-844588 None:intergenic 30.0%
! GTGTGGTAATTTGTGATAAA+TGG + chr3_2:844723-844742 None:intergenic 30.0%
! TATTTTACCTAAGGAAGGAA+GGG + chr3_2:844813-844832 None:intergenic 30.0%
!! TTAGGTTTTTGATTGTCGTT+TGG + chr3_2:845503-845522 None:intergenic 30.0%
!! CCCTAGTGATAATGATATTT+TGG - chr3_2:845577-845596 Msa0390200:intron 30.0%
CCCAAAATATCATTATCACT+AGG + chr3_2:845581-845600 None:intergenic 30.0%
!!! ATACCACGTTTTAGAAATAG+TGG - chr3_2:845645-845664 Msa0390200:intron 30.0%
!!! GATTCTTGTGATTTTGGTTA+AGG - chr3_2:845850-845869 Msa0390200:CDS 30.0%
!!! CTTTTCTTTTGCTTTGGAAT+AGG + chr3_2:844308-844327 None:intergenic 30.0%
!! CAACTACTTTTCTTTTGCTT+TGG + chr3_2:844314-844333 None:intergenic 30.0%
CAAAGCAAAAGAAAAGTAGT+TGG - chr3_2:844312-844331 Msa0390200:three_prime_UTR 30.0%
!!! AGAAAAGTAGTTGGTTTTCA+TGG - chr3_2:844321-844340 Msa0390200:three_prime_UTR 30.0%
TCTCTCATTATTCAAAGTCA+CGG - chr3_2:844402-844421 Msa0390200:exon 30.0%
ATATAGATACATACCTGTGT+TGG + chr3_2:844536-844555 None:intergenic 30.0%
!! TCATGAACTTGTTAATAGGT+TGG + chr3_2:844569-844588 None:intergenic 30.0%
! GTGTGGTAATTTGTGATAAA+TGG + chr3_2:844723-844742 None:intergenic 30.0%
! TATTTTACCTAAGGAAGGAA+GGG + chr3_2:844813-844832 None:intergenic 30.0%
!! TTAGGTTTTTGATTGTCGTT+TGG + chr3_2:845503-845522 None:intergenic 30.0%
!! CCCTAGTGATAATGATATTT+TGG - chr3_2:845577-845596 Msa0390200:intron 30.0%
CCCAAAATATCATTATCACT+AGG + chr3_2:845581-845600 None:intergenic 30.0%
!!! ATACCACGTTTTAGAAATAG+TGG - chr3_2:845645-845664 Msa0390200:intron 30.0%
!!! GATTCTTGTGATTTTGGTTA+AGG - chr3_2:845850-845869 Msa0390200:CDS 30.0%
AATGAAGTCAACGTCCAAAA+CGG - chr3_2:844361-844380 Msa0390200:three_prime_UTR 35.0%
! CTGTGTTGGTGTATAATAAG+GGG + chr3_2:844522-844541 None:intergenic 35.0%
! CCTGTGTTGGTGTATAATAA+GGG + chr3_2:844523-844542 None:intergenic 35.0%
! ACCTGTGTTGGTGTATAATA+AGG + chr3_2:844524-844543 None:intergenic 35.0%
TCTCAAAAATGTGTGGTAGT+TGG + chr3_2:844697-844716 None:intergenic 35.0%
ATGGTTCTCTCAAAAATGTG+TGG + chr3_2:844704-844723 None:intergenic 35.0%
! GTATTTTACCTAAGGAAGGA+AGG + chr3_2:844814-844833 None:intergenic 35.0%
! GTTAATGTTTGGTTCAGACA+AGG - chr3_2:845370-845389 Msa0390200:intron 35.0%
!!! ACGAACTTCGTACGTTTTTT+AGG + chr3_2:845521-845540 None:intergenic 35.0%
AGTTCGTATGATCCTATAGT+TGG - chr3_2:845534-845553 Msa0390200:intron 35.0%
AGTATGGACATTCCAACTAT+AGG + chr3_2:845549-845568 None:intergenic 35.0%
ATAGTTGGAATGTCCATACT+AGG - chr3_2:845549-845568 Msa0390200:intron 35.0%
!! ACACCACTATTTCTAAAACG+TGG + chr3_2:845651-845670 None:intergenic 35.0%
!!! CGTTTTAGAAATAGTGGTGT+TGG - chr3_2:845651-845670 Msa0390200:intron 35.0%
! TAGTGGTGTTGGAAATTATG+AGG - chr3_2:845662-845681 Msa0390200:intron 35.0%
GTTGGAAATTATGAGGAAGA+TGG - chr3_2:845669-845688 Msa0390200:intron 35.0%
TGATTATGGAAGGACTTCTT+GGG - chr3_2:845751-845770 Msa0390200:CDS 35.0%
!!! CTTGTGATTTTGGTTAAGGT+AGG - chr3_2:845854-845873 Msa0390200:CDS 35.0%
AATGAAGTCAACGTCCAAAA+CGG - chr3_2:844361-844380 Msa0390200:three_prime_UTR 35.0%
! CTGTGTTGGTGTATAATAAG+GGG + chr3_2:844522-844541 None:intergenic 35.0%
! CCTGTGTTGGTGTATAATAA+GGG + chr3_2:844523-844542 None:intergenic 35.0%
! ACCTGTGTTGGTGTATAATA+AGG + chr3_2:844524-844543 None:intergenic 35.0%
TCTCAAAAATGTGTGGTAGT+TGG + chr3_2:844697-844716 None:intergenic 35.0%
ATGGTTCTCTCAAAAATGTG+TGG + chr3_2:844704-844723 None:intergenic 35.0%
! GTATTTTACCTAAGGAAGGA+AGG + chr3_2:844814-844833 None:intergenic 35.0%
! GTTAATGTTTGGTTCAGACA+AGG - chr3_2:845370-845389 Msa0390200:intron 35.0%
!!! ACGAACTTCGTACGTTTTTT+AGG + chr3_2:845521-845540 None:intergenic 35.0%
AGTTCGTATGATCCTATAGT+TGG - chr3_2:845534-845553 Msa0390200:intron 35.0%
AGTATGGACATTCCAACTAT+AGG + chr3_2:845549-845568 None:intergenic 35.0%
ATAGTTGGAATGTCCATACT+AGG - chr3_2:845549-845568 Msa0390200:intron 35.0%
!! ACACCACTATTTCTAAAACG+TGG + chr3_2:845651-845670 None:intergenic 35.0%
!!! CGTTTTAGAAATAGTGGTGT+TGG - chr3_2:845651-845670 Msa0390200:intron 35.0%
! TAGTGGTGTTGGAAATTATG+AGG - chr3_2:845662-845681 Msa0390200:intron 35.0%
GTTGGAAATTATGAGGAAGA+TGG - chr3_2:845669-845688 Msa0390200:intron 35.0%
TGATTATGGAAGGACTTCTT+GGG - chr3_2:845751-845770 Msa0390200:CDS 35.0%
!!! CTTGTGATTTTGGTTAAGGT+AGG - chr3_2:845854-845873 Msa0390200:CDS 35.0%
!!! GTAGTTGGTTTTCATGGAGA+TGG - chr3_2:844327-844346 Msa0390200:three_prime_UTR 40.0%
TGAGAGAATGAAGCTTCAAG+CGG + chr3_2:844389-844408 None:intergenic 40.0%
CCCTTATTATACACCAACAC+AGG - chr3_2:844520-844539 Msa0390200:CDS 40.0%
ACAGAAGACACACATGAACA+AGG - chr3_2:845417-845436 Msa0390200:intron 40.0%
ACCAAAACGACAAGAACGAA+GGG - chr3_2:845458-845477 Msa0390200:intron 40.0%
CCAAGCTGAAGTACATAGAA+TGG + chr3_2:845616-845635 None:intergenic 40.0%
CCATTCTATGTACTTCAGCT+TGG - chr3_2:845613-845632 Msa0390200:intron 40.0%
!!! TGACGTGGATTTTGATTCTG+AGG - chr3_2:845713-845732 Msa0390200:CDS 40.0%
GTGATTATGGAAGGACTTCT+TGG - chr3_2:845750-845769 Msa0390200:CDS 40.0%
CTTCTTGGGAGAAATAATCG+AGG - chr3_2:845765-845784 Msa0390200:CDS 40.0%
TGTTTGATCATGTCGTCTGT+TGG - chr3_2:845890-845909 Msa0390200:CDS 40.0%
!!! GTAGTTGGTTTTCATGGAGA+TGG - chr3_2:844327-844346 Msa0390200:three_prime_UTR 40.0%
TGAGAGAATGAAGCTTCAAG+CGG + chr3_2:844389-844408 None:intergenic 40.0%
CCCTTATTATACACCAACAC+AGG - chr3_2:844520-844539 Msa0390200:CDS 40.0%
ACAGAAGACACACATGAACA+AGG - chr3_2:845417-845436 Msa0390200:intron 40.0%
ACCAAAACGACAAGAACGAA+GGG - chr3_2:845458-845477 Msa0390200:intron 40.0%
CCAAGCTGAAGTACATAGAA+TGG + chr3_2:845616-845635 None:intergenic 40.0%
CCATTCTATGTACTTCAGCT+TGG - chr3_2:845613-845632 Msa0390200:intron 40.0%
!!! TGACGTGGATTTTGATTCTG+AGG - chr3_2:845713-845732 Msa0390200:CDS 40.0%
GTGATTATGGAAGGACTTCT+TGG - chr3_2:845750-845769 Msa0390200:CDS 40.0%
CTTCTTGGGAGAAATAATCG+AGG - chr3_2:845765-845784 Msa0390200:CDS 40.0%
TGTTTGATCATGTCGTCTGT+TGG - chr3_2:845890-845909 Msa0390200:CDS 40.0%
ATTGACGGTGGAGAATTGGT+TGG + chr3_2:844470-844489 None:intergenic 45.0%
! TGGTGTATAATAAGGGGTGC+CGG + chr3_2:844516-844535 None:intergenic 45.0%
AATACGACCCTTCCTTCCTT+AGG - chr3_2:844803-844822 Msa0390200:CDS 45.0%
! TGTTTGGTTCAGACAAGGCA+TGG - chr3_2:845375-845394 Msa0390200:intron 45.0%
!!! TCTTGTCGTTTTGGTCGTGT+TGG + chr3_2:845453-845472 None:intergenic 45.0%
GACCAAAACGACAAGAACGA+AGG - chr3_2:845457-845476 Msa0390200:intron 45.0%
!! ACCCTTCGTTCTTGTCGTTT+TGG + chr3_2:845462-845481 None:intergenic 45.0%
TTTGGTTAAGGTAGGCCAGT+AGG - chr3_2:845862-845881 Msa0390200:CDS 45.0%
TGATCAAACAACCCACCTAC+TGG + chr3_2:845880-845899 None:intergenic 45.0%
TTGATCATGTCGTCTGTTGG+TGG - chr3_2:845893-845912 Msa0390200:CDS 45.0%
ATTGACGGTGGAGAATTGGT+TGG + chr3_2:844470-844489 None:intergenic 45.0%
! TGGTGTATAATAAGGGGTGC+CGG + chr3_2:844516-844535 None:intergenic 45.0%
AATACGACCCTTCCTTCCTT+AGG - chr3_2:844803-844822 Msa0390200:CDS 45.0%
! TGTTTGGTTCAGACAAGGCA+TGG - chr3_2:845375-845394 Msa0390200:intron 45.0%
!!! TCTTGTCGTTTTGGTCGTGT+TGG + chr3_2:845453-845472 None:intergenic 45.0%
GACCAAAACGACAAGAACGA+AGG - chr3_2:845457-845476 Msa0390200:intron 45.0%
!! ACCCTTCGTTCTTGTCGTTT+TGG + chr3_2:845462-845481 None:intergenic 45.0%
TTTGGTTAAGGTAGGCCAGT+AGG - chr3_2:845862-845881 Msa0390200:CDS 45.0%
TGATCAAACAACCCACCTAC+TGG + chr3_2:845880-845899 None:intergenic 45.0%
TTGATCATGTCGTCTGTTGG+TGG - chr3_2:845893-845912 Msa0390200:CDS 45.0%
!!! ATTTTTTTTAATTATGTTAT+AGG + chr3_2:844647-844666 None:intergenic 5.0%
!!! AATAAATAATATTTAAAACA+TGG + chr3_2:845344-845363 None:intergenic 5.0%
!!! ATTTTTTTTAATTATGTTAT+AGG + chr3_2:844647-844666 None:intergenic 5.0%
!!! AATAAATAATATTTAAAACA+TGG + chr3_2:845344-845363 None:intergenic 5.0%
CGGAATTGACGGTGGAGAAT+TGG + chr3_2:844474-844493 None:intergenic 50.0%
!! GTGTATAATAAGGGGTGCCG+GGG + chr3_2:844514-844533 None:intergenic 50.0%
!! GGTGTATAATAAGGGGTGCC+GGG + chr3_2:844515-844534 None:intergenic 50.0%
CACTAGGGTCACACCTAGTA+TGG + chr3_2:845565-845584 None:intergenic 50.0%
GTTAAGGTAGGCCAGTAGGT+GGG - chr3_2:845866-845885 Msa0390200:CDS 50.0%
CGGAATTGACGGTGGAGAAT+TGG + chr3_2:844474-844493 None:intergenic 50.0%
!! GTGTATAATAAGGGGTGCCG+GGG + chr3_2:844514-844533 None:intergenic 50.0%
!! GGTGTATAATAAGGGGTGCC+GGG + chr3_2:844515-844534 None:intergenic 50.0%
CACTAGGGTCACACCTAGTA+TGG + chr3_2:845565-845584 None:intergenic 50.0%
GTTAAGGTAGGCCAGTAGGT+GGG - chr3_2:845866-845885 Msa0390200:CDS 50.0%
! AGCTTCAAGCGGCACCGTTT+TGG + chr3_2:844378-844397 None:intergenic 55.0%
ACCGTCAATTCCGCCGTCTA+CGG - chr3_2:844481-844500 Msa0390200:CDS 55.0%
ACCGTAGACGGCGGAATTGA+CGG + chr3_2:844485-844504 None:intergenic 55.0%
GGTTAAGGTAGGCCAGTAGG+TGG - chr3_2:845865-845884 Msa0390200:CDS 55.0%
! AGCTTCAAGCGGCACCGTTT+TGG + chr3_2:844378-844397 None:intergenic 55.0%
ACCGTCAATTCCGCCGTCTA+CGG - chr3_2:844481-844500 Msa0390200:CDS 55.0%
ACCGTAGACGGCGGAATTGA+CGG + chr3_2:844485-844504 None:intergenic 55.0%
GGTTAAGGTAGGCCAGTAGG+TGG - chr3_2:845865-845884 Msa0390200:CDS 55.0%
GTAGACGGCGGAATTGACGG+TGG + chr3_2:844482-844501 None:intergenic 60.0%
GTCAATTCCGCCGTCTACGG+TGG - chr3_2:844484-844503 Msa0390200:CDS 60.0%
GTAGACGGCGGAATTGACGG+TGG + chr3_2:844482-844501 None:intergenic 60.0%
GTCAATTCCGCCGTCTACGG+TGG - chr3_2:844484-844503 Msa0390200:CDS 60.0%
!! GGGAGCACCACCGTAGACGG+CGG + chr3_2:844494-844513 None:intergenic 70.0%
!! CCGGGGAGCACCACCGTAGA+CGG + chr3_2:844497-844516 None:intergenic 70.0%
CCGTCTACGGTGGTGCTCCC+CGG - chr3_2:844494-844513 Msa0390200:CDS 70.0%
!! GGGAGCACCACCGTAGACGG+CGG + chr3_2:844494-844513 None:intergenic 70.0%
!! CCGGGGAGCACCACCGTAGA+CGG + chr3_2:844497-844516 None:intergenic 70.0%
CCGTCTACGGTGGTGCTCCC+CGG - chr3_2:844494-844513 Msa0390200:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 844191 846023 844191 ID=Msa0390200;Name=Msa0390200
chr3_2 mRNA 844191 846023 844191 ID=Msa0390200-mRNA-1;Parent=Msa0390200;Name=Msa0390200-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|223|254
chr3_2 exon 844191 844827 844191 ID=Msa0390200-mRNA-1:exon:254;Parent=Msa0390200-mRNA-1
chr3_2 exon 845673 846023 845673 ID=Msa0390200-mRNA-1:exon:253;Parent=Msa0390200-mRNA-1
chr3_2 CDS 845673 846023 845673 ID=Msa0390200-mRNA-1:cds;Parent=Msa0390200-mRNA-1
chr3_2 CDS 844414 844827 844414 ID=Msa0390200-mRNA-1:cds;Parent=Msa0390200-mRNA-1
chr3_2 three_prime_UTR 844191 844413 844191 ID=Msa0390200-mRNA-1:three_prime_utr;Parent=Msa0390200-mRNA-1
Gene Sequence

>Msa0390200

ATGGCCAAAACCAAAAACTCAAAATCTAAAACCTCTATTTTTCTATGTTGCTTTAGATCACACATACCAAATAAACCTTCAACAAATGATTCATCAAACGTTAAAGTATCTAATCCTATTCCAAAGCAAAAGAAAAGTAGTTGGTTTTCATGGAGATGGATTAAAATGAAAATGAAGTCAACGTCCAAAACGGTGCCGCTTGAAGCTTCATTCTCTCATTATTCAAAGTCACGGTCAAAGTTTTTAACTCTTCATCATAAATCTAAAAAAACTCTACCAACCAATTCTCCACCGTCAATTCCGCCGTCTACGGTGGTGCTCCCCGGCACCCCTTATTATACACCAACACAGACAAGGCATGGTCCAATTGATGACATTATTACAGAAGACACACATGAACAAGGTAGAACTACTCCAACACGACCAAAACGACAAGAACGAAGGGTGTCGTCTACAACACAAAACCAAACGACAATCAAAAACCTAAAAAACGTACGAAGTTCGTATGATCCTATAGTTGGAATGTCCATACTAGGTGTGACCCTAGTGATAATGATATTTTGGGGTCGCTTTTGTGCCATTCTATGTACTTCAGCTTGGTTGTATTTTATACCACGTTTTAGAAATAGTGGTGTTGGAAATTATGAGGAAGATGGTGCCAAAATAATGTCAAAAAATGACGTGGATTTTGATTCTGAGGAGTATAAGAAAAAAGTGATTATGGAAGGACTTCTTGGGAGAAATAATCGAGGTAGTAACATATGA

Protein sequence

>Msa0390200

MAKTKNSKSKTSIFLCCFRSHIPNKPSTNDSSNVKVSNPIPKQKKSSWFSWRWIKMKMKSTSKTVPLEASFSHYSKSRSKFLTLHHKSKKTLPTNSPPSIPPSTVVLPGTPYYTPTQTRHGPIDDIITEDTHEQGRTTPTRPKRQERRVSSTTQNQTTIKNLKNVRSSYDPIVGMSILGVTLVIMIFWGRFCAILCTSAWLYFIPRFRNSGVGNYEEDGAKIMSKNDVDFDSEEYKKKVIMEGLLGRNNRGSNI*