AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0597820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0597820 MtrunA17_Chr4g0020691 99.237 131 1 0 1 131 7 137 1.71e-96 273
Msa0597820 MtrunA17_Chr2g0284621 88.550 131 15 0 1 131 7 137 1.66e-85 245
Msa0597820 MtrunA17_Chr8g0371681 54.867 113 48 2 3 113 12 123 1.05e-36 122
Msa0597820 MtrunA17_Chr5g0405631 55.556 108 45 2 4 109 30 136 5.51e-34 115
Msa0597820 MtrunA17_Chr5g0406281 41.071 112 65 1 6 117 75 185 2.86e-27 99.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0597820 AT2G21045.1 66.154 130 42 2 2 131 39 166 3.98e-60 182
Msa0597820 AT5G66170.3 45.614 114 59 2 2 113 12 124 2.91e-32 111
Msa0597820 AT2G17850.1 51.786 112 51 2 4 113 32 142 5.17e-32 111
Msa0597820 AT5G66170.2 45.690 116 58 3 2 113 12 126 1.08e-30 107
Msa0597820 AT5G66040.1 44.444 108 59 1 6 113 10 116 3.29e-27 97.8
Msa0597820 AT4G35770.1 42.056 107 57 1 16 122 81 182 5.69e-26 96.7
Msa0597820 AT2G17850.3 40.278 144 51 3 4 113 32 174 3.42e-25 94.7
Msa0597820 AT2G17850.2 51.765 85 38 2 4 86 32 115 9.98e-23 86.7
Msa0597820 AT5G66170.1 43.956 91 48 2 2 90 12 101 3.37e-22 85.5
Msa0597820 AT4G35770.3 42.683 82 47 0 16 97 81 162 3.32e-18 76.3
Msa0597820 AT4G35770.2 45.333 75 41 0 16 90 81 155 4.46e-18 75.9
Msa0597820 AT4G35770.5 46.667 60 32 0 16 75 81 140 2.00e-14 66.2
Msa0597820 AT5G66040.2 44.068 59 33 0 55 113 3 61 6.13e-13 60.1

Find 29 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACTTGGTTAACAAAATT+TGG 0.077440 4_2:+30967272 None:intergenic
GTCATAGACTTACTGAATTA+TGG 0.234240 4_2:+30967057 None:intergenic
TTCTTCTGTGCTGAACAAAT+AGG 0.311470 4_2:+30967530 None:intergenic
CAAATTCAGGCTTGTAATGC+TGG 0.378391 4_2:-30967110 Msa0597820:intron
TGGGTGGATGCTGGATTTGC+AGG 0.391447 4_2:-30965898 Msa0597820:CDS
AGATGAATCTAGCAGATCTT+TGG 0.407928 4_2:+30967724 None:intergenic
TCTTCTGTGCTGAACAAATA+GGG 0.420884 4_2:+30967531 None:intergenic
GGGAGGCTACTCTGCGTGGG+TGG 0.422325 4_2:-30965914 Msa0597820:CDS
TTTGGTAGCATGGACATCTA+AGG 0.431769 4_2:+30967742 None:intergenic
TCTTATATATTGCTTCTACT+TGG 0.436133 4_2:+30967258 None:intergenic
GAGGAAGATCAAGTCGAGCC+TGG 0.438094 4_2:-30967088 Msa0597820:CDS
TACTCTGCGTGGGTGGATGC+TGG 0.443842 4_2:-30965907 Msa0597820:CDS
AAAGATCTGCTAGATTCATC+TGG 0.488656 4_2:-30967722 Msa0597820:CDS
TATTTGTTCAGCACAGAAGA+AGG 0.510217 4_2:-30967528 Msa0597820:intron
ATTTAAACATATTGTTAACA+TGG 0.515720 4_2:-30965938 Msa0597820:CDS
CGTTAATAGCATTCTCAACA+TGG 0.522680 4_2:+30967556 None:intergenic
CTAGCAGATCTTTGGTAGCA+TGG 0.528750 4_2:+30967732 None:intergenic
TTTAAACATATTGTTAACAT+GGG 0.557076 4_2:-30965937 Msa0597820:CDS
AGGAAGATCAAGTCGAGCCT+GGG 0.580327 4_2:-30967087 Msa0597820:CDS
TGAATTATGGAGATCAACCC+AGG 0.586135 4_2:+30967070 None:intergenic
AAACATATTGTTAACATGGG+GGG 0.595696 4_2:-30965934 Msa0597820:CDS
AGAAGCAATATATAAGAGTG+AGG 0.598950 4_2:-30967252 Msa0597820:CDS
GTTACAATTATCTTGATGTG+AGG 0.616591 4_2:-30967700 Msa0597820:intron
GAGTGAGGATCACTTAATTG+TGG 0.617072 4_2:-30967237 Msa0597820:intron
TTAAACATATTGTTAACATG+GGG 0.636631 4_2:-30965936 Msa0597820:CDS
TAAACATATTGTTAACATGG+GGG 0.658767 4_2:-30965935 Msa0597820:CDS
ATTCAGGCTTGTAATGCTGG+AGG 0.667532 4_2:-30967107 Msa0597820:intron
CCACTGAAATAGGACTGTGG+AGG 0.719443 4_2:-30967592 Msa0597820:intron
TGTCCACTGAAATAGGACTG+TGG 0.721242 4_2:-30967595 Msa0597820:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAATTGAAACTAA+CGG + chr4_2:30966668-30966687 None:intergenic 10.0%
!!! TCTAAAATAAAAAAACTATT+AGG - chr4_2:30966791-30966810 Msa0597820:intron 10.0%
!!! ATTCATTTATTTTAAACAAA+TGG + chr4_2:30967078-30967097 None:intergenic 10.0%
!! CAAAAATAAATAAAATTAGT+AGG - chr4_2:30967123-30967142 Msa0597820:intron 10.0%
!!! ATTGTTTTTTTATATTAAAG+AGG - chr4_2:30967537-30967556 Msa0597820:CDS 10.0%
!! AAAAAAAAAATTGAAACTAA+CGG + chr4_2:30966668-30966687 None:intergenic 10.0%
!!! TCTAAAATAAAAAAACTATT+AGG - chr4_2:30966791-30966810 Msa0597820:intron 10.0%
!!! ATTCATTTATTTTAAACAAA+TGG + chr4_2:30967078-30967097 None:intergenic 10.0%
!! CAAAAATAAATAAAATTAGT+AGG - chr4_2:30967123-30967142 Msa0597820:intron 10.0%
!!! ATTGTTTTTTTATATTAAAG+AGG - chr4_2:30967537-30967556 Msa0597820:CDS 10.0%
!! AAATTAAAAATGAAGAAACT+GGG + chr4_2:30965947-30965966 None:intergenic 15.0%
!! AAAATTAAAAATGAAGAAAC+TGG + chr4_2:30965948-30965967 None:intergenic 15.0%
!!! TTTTAATTTACCAAACAATT+AGG - chr4_2:30966612-30966631 Msa0597820:intron 15.0%
!! AAAAAAAAATTGAAACTAAC+GGG + chr4_2:30966667-30966686 None:intergenic 15.0%
!!! TTTTTTCTTCAAATGATTAA+GGG + chr4_2:30967004-30967023 None:intergenic 15.0%
!!! TTTTTTTCTTCAAATGATTA+AGG + chr4_2:30967005-30967024 None:intergenic 15.0%
!! AGTAATTAATTATTACTGAT+GGG + chr4_2:30967167-30967186 None:intergenic 15.0%
!! AAGTAATTAATTATTACTGA+TGG + chr4_2:30967168-30967187 None:intergenic 15.0%
!!! AAATAATTTTGAATGCTTAA+TGG + chr4_2:30967608-30967627 None:intergenic 15.0%
!! ATTTAAACATATTGTTAACA+TGG - chr4_2:30967669-30967688 Msa0597820:intron 15.0%
!! TTTAAACATATTGTTAACAT+GGG - chr4_2:30967670-30967689 Msa0597820:intron 15.0%
!! AAATTAAAAATGAAGAAACT+GGG + chr4_2:30965947-30965966 None:intergenic 15.0%
!! AAAATTAAAAATGAAGAAAC+TGG + chr4_2:30965948-30965967 None:intergenic 15.0%
!!! TTTTAATTTACCAAACAATT+AGG - chr4_2:30966612-30966631 Msa0597820:intron 15.0%
!! AAAAAAAAATTGAAACTAAC+GGG + chr4_2:30966667-30966686 None:intergenic 15.0%
!!! TTTTTTCTTCAAATGATTAA+GGG + chr4_2:30967004-30967023 None:intergenic 15.0%
!!! TTTTTTTCTTCAAATGATTA+AGG + chr4_2:30967005-30967024 None:intergenic 15.0%
!! AGTAATTAATTATTACTGAT+GGG + chr4_2:30967167-30967186 None:intergenic 15.0%
!! AAGTAATTAATTATTACTGA+TGG + chr4_2:30967168-30967187 None:intergenic 15.0%
!!! AAATAATTTTGAATGCTTAA+TGG + chr4_2:30967608-30967627 None:intergenic 15.0%
!! ATTTAAACATATTGTTAACA+TGG - chr4_2:30967669-30967688 Msa0597820:intron 15.0%
!! TTTAAACATATTGTTAACAT+GGG - chr4_2:30967670-30967689 Msa0597820:intron 15.0%
!!! TTATAATGGATTACAAATTC+AGG - chr4_2:30966484-30966503 Msa0597820:intron 20.0%
!! TAATCAAAATTGAGAATTTG+AGG + chr4_2:30966579-30966598 None:intergenic 20.0%
!! TAATTGAAATCCTAATTGTT+TGG + chr4_2:30966625-30966644 None:intergenic 20.0%
!! AAAAAAAATTGAAACTAACG+GGG + chr4_2:30966666-30966685 None:intergenic 20.0%
!! TATTGTTATGTTTATTGCTA+AGG - chr4_2:30967041-30967060 Msa0597820:intron 20.0%
!! TTAAACATATTGTTAACATG+GGG - chr4_2:30967671-30967690 Msa0597820:intron 20.0%
!!! TTATAATGGATTACAAATTC+AGG - chr4_2:30966484-30966503 Msa0597820:intron 20.0%
!! TAATCAAAATTGAGAATTTG+AGG + chr4_2:30966579-30966598 None:intergenic 20.0%
!! TAATTGAAATCCTAATTGTT+TGG + chr4_2:30966625-30966644 None:intergenic 20.0%
!! AAAAAAAATTGAAACTAACG+GGG + chr4_2:30966666-30966685 None:intergenic 20.0%
!! TATTGTTATGTTTATTGCTA+AGG - chr4_2:30967041-30967060 Msa0597820:intron 20.0%
!! TTAAACATATTGTTAACATG+GGG - chr4_2:30967671-30967690 Msa0597820:intron 20.0%
! CAAAAGAAAGATAAAGACTT+TGG + chr4_2:30965994-30966013 None:intergenic 25.0%
!!! ATTTAATTTTCTGCTCCTTA+TGG - chr4_2:30966134-30966153 Msa0597820:intron 25.0%
!!! TTTAATTTTCTGCTCCTTAT+GGG - chr4_2:30966135-30966154 Msa0597820:intron 25.0%
! TCTACTTGGTTAACAAAATT+TGG + chr4_2:30966338-30966357 None:intergenic 25.0%
! TCTTATATATTGCTTCTACT+TGG + chr4_2:30966352-30966371 None:intergenic 25.0%
! TAAAACAATATGCACAAATC+AGG - chr4_2:30966429-30966448 Msa0597820:intron 25.0%
! ACACTGATGTATGATTATAA+TGG - chr4_2:30966470-30966489 Msa0597820:intron 25.0%
! ATGTATTACTTGCTTGTATT+TGG + chr4_2:30966840-30966859 None:intergenic 25.0%
! GAATTGGAGATGATAATAAA+TGG - chr4_2:30967234-30967253 Msa0597820:intron 25.0%
! CACAATTCAAATTTCATCAT+AGG - chr4_2:30967312-30967331 Msa0597820:intron 25.0%
! GTTATTGACAAATGATTAGT+GGG + chr4_2:30967500-30967519 None:intergenic 25.0%
! AGTTATTGACAAATGATTAG+TGG + chr4_2:30967501-30967520 None:intergenic 25.0%
!! AATTTTGAATGCTTAATGGA+TGG + chr4_2:30967604-30967623 None:intergenic 25.0%
! TAAACATATTGTTAACATGG+GGG - chr4_2:30967672-30967691 Msa0597820:intron 25.0%
! CAAAAGAAAGATAAAGACTT+TGG + chr4_2:30965994-30966013 None:intergenic 25.0%
!!! ATTTAATTTTCTGCTCCTTA+TGG - chr4_2:30966134-30966153 Msa0597820:intron 25.0%
!!! TTTAATTTTCTGCTCCTTAT+GGG - chr4_2:30966135-30966154 Msa0597820:intron 25.0%
! TCTACTTGGTTAACAAAATT+TGG + chr4_2:30966338-30966357 None:intergenic 25.0%
! TCTTATATATTGCTTCTACT+TGG + chr4_2:30966352-30966371 None:intergenic 25.0%
! TAAAACAATATGCACAAATC+AGG - chr4_2:30966429-30966448 Msa0597820:intron 25.0%
! ACACTGATGTATGATTATAA+TGG - chr4_2:30966470-30966489 Msa0597820:intron 25.0%
! ATGTATTACTTGCTTGTATT+TGG + chr4_2:30966840-30966859 None:intergenic 25.0%
! GAATTGGAGATGATAATAAA+TGG - chr4_2:30967234-30967253 Msa0597820:intron 25.0%
! CACAATTCAAATTTCATCAT+AGG - chr4_2:30967312-30967331 Msa0597820:intron 25.0%
! GTTATTGACAAATGATTAGT+GGG + chr4_2:30967500-30967519 None:intergenic 25.0%
! AGTTATTGACAAATGATTAG+TGG + chr4_2:30967501-30967520 None:intergenic 25.0%
!! AATTTTGAATGCTTAATGGA+TGG + chr4_2:30967604-30967623 None:intergenic 25.0%
! TAAACATATTGTTAACATGG+GGG - chr4_2:30967672-30967691 Msa0597820:intron 25.0%
GTTACAATTATCTTGATGTG+AGG - chr4_2:30965907-30965926 Msa0597820:CDS 30.0%
TGATGTGAGGTAATTAACAA+AGG - chr4_2:30965920-30965939 Msa0597820:CDS 30.0%
! TTTCTTTTGTCCACTGAAAT+AGG - chr4_2:30966005-30966024 Msa0597820:intron 30.0%
AGAAGCAATATATAAGAGTG+AGG - chr4_2:30966355-30966374 Msa0597820:intron 30.0%
GTCATAGACTTACTGAATTA+TGG + chr4_2:30966553-30966572 None:intergenic 30.0%
! CAAAATTGAGAATTTGAGGT+TGG + chr4_2:30966575-30966594 None:intergenic 30.0%
ATCTCTCCAAATGAAAGAAT+TGG - chr4_2:30967218-30967237 Msa0597820:intron 30.0%
TCATCTCCAATTCTTTCATT+TGG + chr4_2:30967227-30967246 None:intergenic 30.0%
TTGTGTATGTTGAAGTTACA+TGG + chr4_2:30967297-30967316 None:intergenic 30.0%
! AATCCATTTTGTGTACGTAA+TGG - chr4_2:30967374-30967393 Msa0597820:intron 30.0%
! ATCCATTTTGTGTACGTAAT+GGG - chr4_2:30967375-30967394 Msa0597820:intron 30.0%
AGAAATTTAGGCATGCTAAA+GGG + chr4_2:30967468-30967487 None:intergenic 30.0%
AAGAAATTTAGGCATGCTAA+AGG + chr4_2:30967469-30967488 None:intergenic 30.0%
AAACATATTGTTAACATGGG+GGG - chr4_2:30967673-30967692 Msa0597820:intron 30.0%
GTTACAATTATCTTGATGTG+AGG - chr4_2:30965907-30965926 Msa0597820:CDS 30.0%
TGATGTGAGGTAATTAACAA+AGG - chr4_2:30965920-30965939 Msa0597820:CDS 30.0%
! TTTCTTTTGTCCACTGAAAT+AGG - chr4_2:30966005-30966024 Msa0597820:intron 30.0%
AGAAGCAATATATAAGAGTG+AGG - chr4_2:30966355-30966374 Msa0597820:intron 30.0%
GTCATAGACTTACTGAATTA+TGG + chr4_2:30966553-30966572 None:intergenic 30.0%
! CAAAATTGAGAATTTGAGGT+TGG + chr4_2:30966575-30966594 None:intergenic 30.0%
ATCTCTCCAAATGAAAGAAT+TGG - chr4_2:30967218-30967237 Msa0597820:intron 30.0%
TCATCTCCAATTCTTTCATT+TGG + chr4_2:30967227-30967246 None:intergenic 30.0%
TTGTGTATGTTGAAGTTACA+TGG + chr4_2:30967297-30967316 None:intergenic 30.0%
! AATCCATTTTGTGTACGTAA+TGG - chr4_2:30967374-30967393 Msa0597820:intron 30.0%
! ATCCATTTTGTGTACGTAAT+GGG - chr4_2:30967375-30967394 Msa0597820:intron 30.0%
AGAAATTTAGGCATGCTAAA+GGG + chr4_2:30967468-30967487 None:intergenic 30.0%
AAGAAATTTAGGCATGCTAA+AGG + chr4_2:30967469-30967488 None:intergenic 30.0%
AAACATATTGTTAACATGGG+GGG - chr4_2:30967673-30967692 Msa0597820:intron 30.0%
AGATGAATCTAGCAGATCTT+TGG + chr4_2:30965886-30965905 None:intergenic 35.0%
AAAGATCTGCTAGATTCATC+TGG - chr4_2:30965885-30965904 Msa0597820:CDS 35.0%
CGTTAATAGCATTCTCAACA+TGG + chr4_2:30966054-30966073 None:intergenic 35.0%
TCTTCTGTGCTGAACAAATA+GGG + chr4_2:30966079-30966098 None:intergenic 35.0%
TTCTTCTGTGCTGAACAAAT+AGG + chr4_2:30966080-30966099 None:intergenic 35.0%
TATTTGTTCAGCACAGAAGA+AGG - chr4_2:30966079-30966098 Msa0597820:intron 35.0%
GATGGGACTTACTTAATGAT+AGG + chr4_2:30967150-30967169 None:intergenic 35.0%
! TCTATCGTGGATGCTTTTAA+TGG + chr4_2:30967352-30967371 None:intergenic 35.0%
! CAAAATGGATTTCTCTATCG+TGG + chr4_2:30967365-30967384 None:intergenic 35.0%
! TTGAATGCTTAATGGATGGA+GGG + chr4_2:30967600-30967619 None:intergenic 35.0%
! TTTGAATGCTTAATGGATGG+AGG + chr4_2:30967601-30967620 None:intergenic 35.0%
TGATGTTGTAATTAACGAGC+AGG - chr4_2:30967645-30967664 Msa0597820:intron 35.0%
GATGTTGTAATTAACGAGCA+GGG - chr4_2:30967646-30967665 Msa0597820:intron 35.0%
AAGGTAACAACATCTTGATG+TGG + chr4_2:30965849-30965868 None:intergenic 35.0%
AGATGAATCTAGCAGATCTT+TGG + chr4_2:30965886-30965905 None:intergenic 35.0%
AAAGATCTGCTAGATTCATC+TGG - chr4_2:30965885-30965904 Msa0597820:CDS 35.0%
CGTTAATAGCATTCTCAACA+TGG + chr4_2:30966054-30966073 None:intergenic 35.0%
TCTTCTGTGCTGAACAAATA+GGG + chr4_2:30966079-30966098 None:intergenic 35.0%
TTCTTCTGTGCTGAACAAAT+AGG + chr4_2:30966080-30966099 None:intergenic 35.0%
TATTTGTTCAGCACAGAAGA+AGG - chr4_2:30966079-30966098 Msa0597820:intron 35.0%
GATGGGACTTACTTAATGAT+AGG + chr4_2:30967150-30967169 None:intergenic 35.0%
! TCTATCGTGGATGCTTTTAA+TGG + chr4_2:30967352-30967371 None:intergenic 35.0%
! CAAAATGGATTTCTCTATCG+TGG + chr4_2:30967365-30967384 None:intergenic 35.0%
! TTGAATGCTTAATGGATGGA+GGG + chr4_2:30967600-30967619 None:intergenic 35.0%
! TTTGAATGCTTAATGGATGG+AGG + chr4_2:30967601-30967620 None:intergenic 35.0%
TGATGTTGTAATTAACGAGC+AGG - chr4_2:30967645-30967664 Msa0597820:intron 35.0%
GATGTTGTAATTAACGAGCA+GGG - chr4_2:30967646-30967665 Msa0597820:intron 35.0%
! TTTGGTAGCATGGACATCTA+AGG + chr4_2:30965868-30965887 None:intergenic 40.0%
CAGCACAGAAGAAGGTAATA+TGG - chr4_2:30966087-30966106 Msa0597820:intron 40.0%
TGTGCTTACAACTGATCAAC+AGG - chr4_2:30966299-30966318 Msa0597820:intron 40.0%
CTTACAACTGATCAACAGGA+CGG - chr4_2:30966303-30966322 Msa0597820:intron 40.0%
TTACAACTGATCAACAGGAC+GGG - chr4_2:30966304-30966323 Msa0597820:intron 40.0%
GAGTGAGGATCACTTAATTG+TGG - chr4_2:30966370-30966389 Msa0597820:intron 40.0%
CAAATTCAGGCTTGTAATGC+TGG - chr4_2:30966497-30966516 Msa0597820:intron 40.0%
TGAATTATGGAGATCAACCC+AGG + chr4_2:30966540-30966559 None:intergenic 40.0%
TAGCTAGCGATAAACGAGTT+AGG + chr4_2:30967262-30967281 None:intergenic 40.0%
GACCCATTACGTACACAAAA+TGG + chr4_2:30967380-30967399 None:intergenic 40.0%
GGGTCTCGGTTAAGAAATTT+AGG + chr4_2:30967480-30967499 None:intergenic 40.0%
! GACAAATGATTAGTGGGTCT+CGG + chr4_2:30967494-30967513 None:intergenic 40.0%
!!! CTTGTTTTAAGCTCTTCTGC+AGG + chr4_2:30967745-30967764 None:intergenic 40.0%
! TTTGGTAGCATGGACATCTA+AGG + chr4_2:30965868-30965887 None:intergenic 40.0%
CAGCACAGAAGAAGGTAATA+TGG - chr4_2:30966087-30966106 Msa0597820:intron 40.0%
TGTGCTTACAACTGATCAAC+AGG - chr4_2:30966299-30966318 Msa0597820:intron 40.0%
CTTACAACTGATCAACAGGA+CGG - chr4_2:30966303-30966322 Msa0597820:intron 40.0%
TTACAACTGATCAACAGGAC+GGG - chr4_2:30966304-30966323 Msa0597820:intron 40.0%
GAGTGAGGATCACTTAATTG+TGG - chr4_2:30966370-30966389 Msa0597820:intron 40.0%
CAAATTCAGGCTTGTAATGC+TGG - chr4_2:30966497-30966516 Msa0597820:intron 40.0%
TGAATTATGGAGATCAACCC+AGG + chr4_2:30966540-30966559 None:intergenic 40.0%
TAGCTAGCGATAAACGAGTT+AGG + chr4_2:30967262-30967281 None:intergenic 40.0%
GACCCATTACGTACACAAAA+TGG + chr4_2:30967380-30967399 None:intergenic 40.0%
GGGTCTCGGTTAAGAAATTT+AGG + chr4_2:30967480-30967499 None:intergenic 40.0%
! GACAAATGATTAGTGGGTCT+CGG + chr4_2:30967494-30967513 None:intergenic 40.0%
!!! CTTGTTTTAAGCTCTTCTGC+AGG + chr4_2:30967745-30967764 None:intergenic 40.0%
! CTAGCAGATCTTTGGTAGCA+TGG + chr4_2:30965878-30965897 None:intergenic 45.0%
TGTCCACTGAAATAGGACTG+TGG - chr4_2:30966012-30966031 Msa0597820:intron 45.0%
TTTCTGCTCCTTATGGGTAG+AGG - chr4_2:30966141-30966160 Msa0597820:intron 45.0%
TGTTGCTACCTCTACCCATA+AGG + chr4_2:30966152-30966171 None:intergenic 45.0%
ATTCAGGCTTGTAATGCTGG+AGG - chr4_2:30966500-30966519 Msa0597820:intron 45.0%
CTCGTTTATCGCTAGCTAAG+TGG - chr4_2:30967264-30967283 Msa0597820:CDS 45.0%
!! TGTGTACGTAATGGGTCTCA+TGG - chr4_2:30967383-30967402 Msa0597820:intron 45.0%
!! GTGTACGTAATGGGTCTCAT+GGG - chr4_2:30967384-30967403 Msa0597820:intron 45.0%
! TTAAAGAGGCGTAAGACGCA+CGG - chr4_2:30967551-30967570 Msa0597820:CDS 45.0%
CATATTGTTAACATGGGGGG+AGG - chr4_2:30967676-30967695 Msa0597820:intron 45.0%
! CTAGCAGATCTTTGGTAGCA+TGG + chr4_2:30965878-30965897 None:intergenic 45.0%
TGTCCACTGAAATAGGACTG+TGG - chr4_2:30966012-30966031 Msa0597820:intron 45.0%
TTTCTGCTCCTTATGGGTAG+AGG - chr4_2:30966141-30966160 Msa0597820:intron 45.0%
TGTTGCTACCTCTACCCATA+AGG + chr4_2:30966152-30966171 None:intergenic 45.0%
ATTCAGGCTTGTAATGCTGG+AGG - chr4_2:30966500-30966519 Msa0597820:intron 45.0%
CTCGTTTATCGCTAGCTAAG+TGG - chr4_2:30967264-30967283 Msa0597820:CDS 45.0%
!! TGTGTACGTAATGGGTCTCA+TGG - chr4_2:30967383-30967402 Msa0597820:intron 45.0%
!! GTGTACGTAATGGGTCTCAT+GGG - chr4_2:30967384-30967403 Msa0597820:intron 45.0%
! TTAAAGAGGCGTAAGACGCA+CGG - chr4_2:30967551-30967570 Msa0597820:CDS 45.0%
CATATTGTTAACATGGGGGG+AGG - chr4_2:30967676-30967695 Msa0597820:intron 45.0%
!! AATTATCTTAATATAAATTT+AGG - chr4_2:30966640-30966659 Msa0597820:intron 5.0%
!!! ATTTATTTTTTATAGTAAAA+AGG - chr4_2:30966876-30966895 Msa0597820:intron 5.0%
!! AATTATCTTAATATAAATTT+AGG - chr4_2:30966640-30966659 Msa0597820:intron 5.0%
!!! ATTTATTTTTTATAGTAAAA+AGG - chr4_2:30966876-30966895 Msa0597820:intron 5.0%
CCTCCACAGTCCTATTTCAG+TGG + chr4_2:30966018-30966037 None:intergenic 50.0%
CCACTGAAATAGGACTGTGG+AGG - chr4_2:30966015-30966034 Msa0597820:intron 50.0%
AGGAAGATCAAGTCGAGCCT+GGG - chr4_2:30966520-30966539 Msa0597820:intron 50.0%
CCTCCACAGTCCTATTTCAG+TGG + chr4_2:30966018-30966037 None:intergenic 50.0%
CCACTGAAATAGGACTGTGG+AGG - chr4_2:30966015-30966034 Msa0597820:intron 50.0%
AGGAAGATCAAGTCGAGCCT+GGG - chr4_2:30966520-30966539 Msa0597820:intron 50.0%
GAGGAAGATCAAGTCGAGCC+TGG - chr4_2:30966519-30966538 Msa0597820:intron 55.0%
TGGGTGGATGCTGGATTTGC+AGG - chr4_2:30967709-30967728 Msa0597820:CDS 55.0%
GAGGAAGATCAAGTCGAGCC+TGG - chr4_2:30966519-30966538 Msa0597820:intron 55.0%
TGGGTGGATGCTGGATTTGC+AGG - chr4_2:30967709-30967728 Msa0597820:CDS 55.0%
TACTCTGCGTGGGTGGATGC+TGG - chr4_2:30967700-30967719 Msa0597820:intron 60.0%
TACTCTGCGTGGGTGGATGC+TGG - chr4_2:30967700-30967719 Msa0597820:intron 60.0%
TGGGGGGAGGCTACTCTGCG+TGG - chr4_2:30967689-30967708 Msa0597820:intron 70.0%
GGGGGGAGGCTACTCTGCGT+GGG - chr4_2:30967690-30967709 Msa0597820:intron 70.0%
GGGAGGCTACTCTGCGTGGG+TGG - chr4_2:30967693-30967712 Msa0597820:intron 70.0%
TGGGGGGAGGCTACTCTGCG+TGG - chr4_2:30967689-30967708 Msa0597820:intron 70.0%
GGGGGGAGGCTACTCTGCGT+GGG - chr4_2:30967690-30967709 Msa0597820:intron 70.0%
GGGAGGCTACTCTGCGTGGG+TGG - chr4_2:30967693-30967712 Msa0597820:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 30965849 30967780 30965849 ID=Msa0597820;Name=Msa0597820
chr4_2 mRNA 30965849 30967780 30965849 ID=Msa0597820-mRNA-1;Parent=Msa0597820;Name=Msa0597820-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|1|1|0.8|5|0|131
chr4_2 exon 30967701 30967780 30967701 ID=Msa0597820-mRNA-1:exon:7756;Parent=Msa0597820-mRNA-1
chr4_2 exon 30967529 30967602 30967529 ID=Msa0597820-mRNA-1:exon:7755;Parent=Msa0597820-mRNA-1
chr4_2 exon 30967238 30967308 30967238 ID=Msa0597820-mRNA-1:exon:7754;Parent=Msa0597820-mRNA-1
chr4_2 exon 30967070 30967123 30967070 ID=Msa0597820-mRNA-1:exon:7753;Parent=Msa0597820-mRNA-1
chr4_2 exon 30965849 30965962 30965849 ID=Msa0597820-mRNA-1:exon:7752;Parent=Msa0597820-mRNA-1
chr4_2 CDS 30967701 30967780 30967701 ID=Msa0597820-mRNA-1:cds;Parent=Msa0597820-mRNA-1
chr4_2 CDS 30967529 30967602 30967529 ID=Msa0597820-mRNA-1:cds;Parent=Msa0597820-mRNA-1
chr4_2 CDS 30967238 30967308 30967238 ID=Msa0597820-mRNA-1:cds;Parent=Msa0597820-mRNA-1
chr4_2 CDS 30967070 30967123 30967070 ID=Msa0597820-mRNA-1:cds;Parent=Msa0597820-mRNA-1
chr4_2 CDS 30965849 30965962 30965849 ID=Msa0597820-mRNA-1:cds;Parent=Msa0597820-mRNA-1
Gene Sequence

>Msa0597820

CATCAAGATGTTGTTACCTTAGATGTCCATGCTACCAAAGATCTGCTAGATTCATCTGGTTACAATTATCTTGATGTGAGGACTGTGGAGGAATTCAATAAAAGCCATGTTGAGAATGCTATTAACGTACCCTATTTGTTCAGCACAGAAGAAGGACGGGTGAAAAATCCAAATTTTGTTAACCAAGTAGAAGCAATATATAAGAGTGAGGATCACTTAATTGTGGCTTGTAATGCTGGAGGAAGATCAAGTCGAGCCTGGGTTGATCTCCATAATTCAGGATTTAAACATATTGTTAACATGGGGGGAGGCTACTCTGCGTGGGTGGATGCTGGATTTGCAGGTGATGACAAGCCTGCAGAAGAGCTTAAAACAAGTTGCAAGTTTCGTCCA

Protein sequence

>Msa0597820

HQDVVTLDVHATKDLLDSSGYNYLDVRTVEEFNKSHVENAINVPYLFSTEEGRVKNPNFVNQVEAIYKSEDHLIVACNAGGRSSRAWVDLHNSGFKHIVNMGGGYSAWVDAGFAGDDKPAEELKTSCKFRP