AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0107830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0107830 MtrunA17_Chr1g0164301 93.307 254 17 0 1 254 1 254 1.82e-168 465
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0107830 AT5G08240.1 48.235 85 39 2 169 252 176 256 7.47e-23 94.4
Msa0107830 AT5G23160.1 32.642 193 85 7 79 252 104 270 1.84e-20 88.2

Find 52 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTAGTGATAATGATATTT+TGG 0.090980 1_3:-18844569 Msa0107830:CDS
AATTAAGATTCTTGTGATTT+TGG 0.103432 1_3:-18844302 Msa0107830:three_prime_UTR
TCATTTGTTGAAGGTTTATT+TGG 0.156691 1_3:+18845890 None:intergenic
ACCTGTGTTGGTGTATAATA+AGG 0.196392 1_3:+18845626 None:intergenic
AGCTTCAAGCGGCACCGTTT+TGG 0.297229 1_3:+18845772 None:intergenic
GTGATTATGGAAGGACTTCT+TGG 0.303559 1_3:-18844396 Msa0107830:CDS
ACCCTTCGTTCTTGTCGTTT+TGG 0.306850 1_3:+18844687 None:intergenic
CACTAGGGTCACACCTAGTA+TGG 0.331968 1_3:+18844584 None:intergenic
CGGAATTGACGGTGGAGAAT+TGG 0.382165 1_3:+18845676 None:intergenic
TCTGTAATAATGTCATCAAT+TGG 0.442337 1_3:+18844747 None:intergenic
ACCGTCAATTCCGCCGTCTA+CGG 0.455743 1_3:-18845666 Msa0107830:CDS
TTTGATGAATCATTTGTTGA+AGG 0.456259 1_3:+18845881 None:intergenic
CCTGTGTTGGTGTATAATAA+GGG 0.458661 1_3:+18845627 None:intergenic
CAAAGCAAAAGAAAAGTAGT+TGG 0.462094 1_3:-18845835 Msa0107830:CDS
AGTATGGACATTCCAACTAT+AGG 0.463810 1_3:+18844600 None:intergenic
CCGTCTACGGTGGTGCTCCC+CGG 0.471029 1_3:-18845653 Msa0107830:CDS
AGTTCGTATGATCCTATAGT+TGG 0.471500 1_3:-18844612 Msa0107830:CDS
CCATTCTATGTACTTCAGCT+TGG 0.478889 1_3:-18844533 Msa0107830:CDS
ACCGTAGACGGCGGAATTGA+CGG 0.482737 1_3:+18845665 None:intergenic
TGATTATGGAAGGACTTCTT+GGG 0.486920 1_3:-18844395 Msa0107830:CDS
TGATCAAACAACCCACCTAC+TGG 0.491103 1_3:+18844269 None:intergenic
GGTGTATAATAAGGGGTGCC+GGG 0.507092 1_3:+18845635 None:intergenic
TAGTGGTGTTGGAAATTATG+AGG 0.517184 1_3:-18844484 Msa0107830:CDS
TGGTGTATAATAAGGGGTGC+CGG 0.525086 1_3:+18845634 None:intergenic
GGTTAAGGTAGGCCAGTAGG+TGG 0.528338 1_3:-18844281 Msa0107830:three_prime_UTR
CCCAAAATATCATTATCACT+AGG 0.532345 1_3:+18844568 None:intergenic
ATAGTTGGAATGTCCATACT+AGG 0.535327 1_3:-18844597 Msa0107830:CDS
CCAAGCTGAAGTACATAGAA+TGG 0.538851 1_3:+18844533 None:intergenic
TGTTTGATCATGTCGTCTGT+TGG 0.539282 1_3:-18844256 Msa0107830:three_prime_UTR
CCGGGGAGCACCACCGTAGA+CGG 0.542653 1_3:+18845653 None:intergenic
TTGATCATGTCGTCTGTTGG+TGG 0.545223 1_3:-18844253 Msa0107830:three_prime_UTR
TGTTTGGTTCAGACAAGGCA+TGG 0.557886 1_3:-18844771 Msa0107830:intron
GACCAAAACGACAAGAACGA+AGG 0.559782 1_3:-18844689 Msa0107830:CDS
AATGAAGTCAACGTCCAAAA+CGG 0.561793 1_3:-18845786 Msa0107830:CDS
CCAAAATATCATTATCACTA+GGG 0.576254 1_3:+18844569 None:intergenic
TTTGGTTAAGGTAGGCCAGT+AGG 0.582540 1_3:-18844284 Msa0107830:three_prime_UTR
TCTCTCATTATTCAAAGTCA+CGG 0.583059 1_3:-18845745 Msa0107830:CDS
GTTAAGGTAGGCCAGTAGGT+GGG 0.593861 1_3:-18844280 Msa0107830:three_prime_UTR
GTCAATTCCGCCGTCTACGG+TGG 0.605008 1_3:-18845663 Msa0107830:CDS
ATATAGATACATACCTGTGT+TGG 0.616378 1_3:+18845614 None:intergenic
ATTGACGGTGGAGAATTGGT+TGG 0.618047 1_3:+18845680 None:intergenic
ACCAAAACGACAAGAACGAA+GGG 0.618443 1_3:-18844688 Msa0107830:CDS
GTTGGAAATTATGAGGAAGA+TGG 0.618802 1_3:-18844477 Msa0107830:CDS
GTGTATAATAAGGGGTGCCG+GGG 0.641424 1_3:+18845636 None:intergenic
CCCTTATTATACACCAACAC+AGG 0.642258 1_3:-18845627 Msa0107830:intron
TGAGAGAATGAAGCTTCAAG+CGG 0.647573 1_3:+18845761 None:intergenic
ACAGAAGACACACATGAACA+AGG 0.659785 1_3:-18844729 Msa0107830:CDS
GGGAGCACCACCGTAGACGG+CGG 0.676555 1_3:+18845656 None:intergenic
CTGTGTTGGTGTATAATAAG+GGG 0.699987 1_3:+18845628 None:intergenic
ACACCACTATTTCTAAAACG+TGG 0.710690 1_3:+18844498 None:intergenic
GTAGACGGCGGAATTGACGG+TGG 0.731544 1_3:+18845668 None:intergenic
CTTCTTGGGAGAAATAATCG+AGG 0.735972 1_3:-18844381 Msa0107830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAATTATGTTAACA+TGG - chr1_3:18844611-18844630 Msa0107830:CDS 10.0%
!!! TTTTAAAAAAATGAATTTCT+TGG + chr1_3:18844983-18845002 None:intergenic 10.0%
!!! AAGTATAATTTTTTTTTTGA+AGG - chr1_3:18845036-18845055 Msa0107830:intron 10.0%
!! AATTAAAAGTAATTAAACAA+AGG + chr1_3:18845116-18845135 None:intergenic 10.0%
!! TTTATGAAAAAAAATCAAAA+TGG + chr1_3:18845170-18845189 None:intergenic 10.0%
!! TAAAAAAAATTATGTTAACA+TGG - chr1_3:18844611-18844630 Msa0107830:CDS 10.0%
!!! TTTTAAAAAAATGAATTTCT+TGG + chr1_3:18844983-18845002 None:intergenic 10.0%
!!! AAGTATAATTTTTTTTTTGA+AGG - chr1_3:18845036-18845055 Msa0107830:intron 10.0%
!! AATTAAAAGTAATTAAACAA+AGG + chr1_3:18845116-18845135 None:intergenic 10.0%
!! TTTATGAAAAAAAATCAAAA+TGG + chr1_3:18845170-18845189 None:intergenic 10.0%
!! TATTATTAAATTGACTACAA+TGG - chr1_3:18844720-18844739 Msa0107830:CDS 15.0%
!! ATTATTAAATTGACTACAAT+GGG - chr1_3:18844721-18844740 Msa0107830:CDS 15.0%
!!! TTTTTTTTTTCTTTTTCTGA+TGG + chr1_3:18844907-18844926 None:intergenic 15.0%
!!! TTATTTTGTTTGTTAATGTT+TGG - chr1_3:18845314-18845333 Msa0107830:intron 15.0%
!! TATTATTAAATTGACTACAA+TGG - chr1_3:18844720-18844739 Msa0107830:CDS 15.0%
!! ATTATTAAATTGACTACAAT+GGG - chr1_3:18844721-18844740 Msa0107830:CDS 15.0%
!!! TTTTTTTTTTCTTTTTCTGA+TGG + chr1_3:18844907-18844926 None:intergenic 15.0%
!!! TTATTTTGTTTGTTAATGTT+TGG - chr1_3:18845314-18845333 Msa0107830:intron 15.0%
!!! AAAATCATGAACTTGTTAAT+AGG + chr1_3:18844527-18844546 None:intergenic 20.0%
!!! TTAACAAGTTCATGATTTTT+AGG - chr1_3:18844528-18844547 Msa0107830:CDS 20.0%
!!! TAACAAGTTCATGATTTTTA+GGG - chr1_3:18844529-18844548 Msa0107830:CDS 20.0%
!!! TCAACTATACTTTCTTTTTT+TGG - chr1_3:18844821-18844840 Msa0107830:intron 20.0%
!!! GTCATTTTTTGACATTATTT+TGG + chr1_3:18845652-18845671 None:intergenic 20.0%
!! GTATAAGAAAAAAGTGATTA+TGG - chr1_3:18845692-18845711 Msa0107830:CDS 20.0%
!! TTACTCAAAAAAAGGAAAAA+AGG - chr1_3:18845772-18845791 Msa0107830:CDS 20.0%
!! TACTCAAAAAAAGGAAAAAA+GGG - chr1_3:18845773-18845792 Msa0107830:CDS 20.0%
!!! AATTAAGATTCTTGTGATTT+TGG - chr1_3:18845799-18845818 Msa0107830:CDS 20.0%
!!! AAAATCATGAACTTGTTAAT+AGG + chr1_3:18844527-18844546 None:intergenic 20.0%
!!! TTAACAAGTTCATGATTTTT+AGG - chr1_3:18844528-18844547 Msa0107830:CDS 20.0%
!!! TAACAAGTTCATGATTTTTA+GGG - chr1_3:18844529-18844548 Msa0107830:CDS 20.0%
!!! TCAACTATACTTTCTTTTTT+TGG - chr1_3:18844821-18844840 Msa0107830:intron 20.0%
!!! GTCATTTTTTGACATTATTT+TGG + chr1_3:18845652-18845671 None:intergenic 20.0%
!! GTATAAGAAAAAAGTGATTA+TGG - chr1_3:18845692-18845711 Msa0107830:CDS 20.0%
!! TTACTCAAAAAAAGGAAAAA+AGG - chr1_3:18845772-18845791 Msa0107830:CDS 20.0%
!! TACTCAAAAAAAGGAAAAAA+GGG - chr1_3:18845773-18845792 Msa0107830:CDS 20.0%
!!! AATTAAGATTCTTGTGATTT+TGG - chr1_3:18845799-18845818 Msa0107830:CDS 20.0%
!!! AGATTTTGAGTTTTTGGTTT+TGG + chr1_3:18844152-18844171 None:intergenic 25.0%
!!! GGTTTTAGATTTTGAGTTTT+TGG + chr1_3:18844158-18844177 None:intergenic 25.0%
! AAAGCAACATAGAAAAATAG+AGG + chr1_3:18844179-18844198 None:intergenic 25.0%
!! TCATTTGTTGAAGGTTTATT+TGG + chr1_3:18844214-18844233 None:intergenic 25.0%
!! TTTGATGAATCATTTGTTGA+AGG + chr1_3:18844223-18844242 None:intergenic 25.0%
! AGTATTGTGTAGCTTAATTA+AGG - chr1_3:18844557-18844576 Msa0107830:CDS 25.0%
! AAAATTTACTACTTCAAGTG+TGG + chr1_3:18844694-18844713 None:intergenic 25.0%
!! ATTTGTATTTTACCTAAGGA+AGG + chr1_3:18844772-18844791 None:intergenic 25.0%
!! TCGTATTTGTATTTTACCTA+AGG + chr1_3:18844776-18844795 None:intergenic 25.0%
! GAAAGACATACATTTAAGAA+GGG + chr1_3:18844799-18844818 None:intergenic 25.0%
! AGAAAGACATACATTTAAGA+AGG + chr1_3:18844800-18844819 None:intergenic 25.0%
! TCTGTAATAATGTCATCAAT+TGG + chr1_3:18845357-18845376 None:intergenic 25.0%
! CCAAAATATCATTATCACTA+GGG + chr1_3:18845535-18845554 None:intergenic 25.0%
!!! CCTAGTGATAATGATATTTT+GGG - chr1_3:18845533-18845552 Msa0107830:intron 25.0%
!!! CTAGTGATAATGATATTTTG+GGG - chr1_3:18845534-18845553 Msa0107830:intron 25.0%
! AATAATGTCAAAAAATGACG+TGG - chr1_3:18845653-18845672 Msa0107830:CDS 25.0%
! AAGAAAAAAGTGATTATGGA+AGG - chr1_3:18845696-18845715 Msa0107830:CDS 25.0%
!! TTCTTGTGTTACTCAAAAAA+AGG - chr1_3:18845764-18845783 Msa0107830:CDS 25.0%
!!! AGATTTTGAGTTTTTGGTTT+TGG + chr1_3:18844152-18844171 None:intergenic 25.0%
!!! GGTTTTAGATTTTGAGTTTT+TGG + chr1_3:18844158-18844177 None:intergenic 25.0%
! AAAGCAACATAGAAAAATAG+AGG + chr1_3:18844179-18844198 None:intergenic 25.0%
!! TCATTTGTTGAAGGTTTATT+TGG + chr1_3:18844214-18844233 None:intergenic 25.0%
!! TTTGATGAATCATTTGTTGA+AGG + chr1_3:18844223-18844242 None:intergenic 25.0%
! AGTATTGTGTAGCTTAATTA+AGG - chr1_3:18844557-18844576 Msa0107830:CDS 25.0%
! AAAATTTACTACTTCAAGTG+TGG + chr1_3:18844694-18844713 None:intergenic 25.0%
!! ATTTGTATTTTACCTAAGGA+AGG + chr1_3:18844772-18844791 None:intergenic 25.0%
!! TCGTATTTGTATTTTACCTA+AGG + chr1_3:18844776-18844795 None:intergenic 25.0%
! GAAAGACATACATTTAAGAA+GGG + chr1_3:18844799-18844818 None:intergenic 25.0%
! AGAAAGACATACATTTAAGA+AGG + chr1_3:18844800-18844819 None:intergenic 25.0%
! TCTGTAATAATGTCATCAAT+TGG + chr1_3:18845357-18845376 None:intergenic 25.0%
! CCAAAATATCATTATCACTA+GGG + chr1_3:18845535-18845554 None:intergenic 25.0%
!!! CCTAGTGATAATGATATTTT+GGG - chr1_3:18845533-18845552 Msa0107830:intron 25.0%
!!! CTAGTGATAATGATATTTTG+GGG - chr1_3:18845534-18845553 Msa0107830:intron 25.0%
! AATAATGTCAAAAAATGACG+TGG - chr1_3:18845653-18845672 Msa0107830:CDS 25.0%
! AAGAAAAAAGTGATTATGGA+AGG - chr1_3:18845696-18845715 Msa0107830:CDS 25.0%
!! TTCTTGTGTTACTCAAAAAA+AGG - chr1_3:18845764-18845783 Msa0107830:CDS 25.0%
!!! CTTTTCTTTTGCTTTGGAAT+AGG + chr1_3:18844262-18844281 None:intergenic 30.0%
!! CAACTACTTTTCTTTTGCTT+TGG + chr1_3:18844268-18844287 None:intergenic 30.0%
CAAAGCAAAAGAAAAGTAGT+TGG - chr1_3:18844266-18844285 Msa0107830:three_prime_UTR 30.0%
!!! AGAAAAGTAGTTGGTTTTCA+TGG - chr1_3:18844275-18844294 Msa0107830:three_prime_UTR 30.0%
TCTCTCATTATTCAAAGTCA+CGG - chr1_3:18844356-18844375 Msa0107830:exon 30.0%
ATATAGATACATACCTGTGT+TGG + chr1_3:18844490-18844509 None:intergenic 30.0%
!! TCATGAACTTGTTAATAGGT+TGG + chr1_3:18844523-18844542 None:intergenic 30.0%
! GTGTGGTAATTTGTGATAAA+TGG + chr1_3:18844677-18844696 None:intergenic 30.0%
! TATTTTACCTAAGGAAGGAA+GGG + chr1_3:18844767-18844786 None:intergenic 30.0%
!! TTAGGTTTTTGATTGTCGTT+TGG + chr1_3:18845458-18845477 None:intergenic 30.0%
!! CCCTAGTGATAATGATATTT+TGG - chr1_3:18845532-18845551 Msa0107830:intron 30.0%
CCCAAAATATCATTATCACT+AGG + chr1_3:18845536-18845555 None:intergenic 30.0%
!!! ATACCACGTTTTAGAAATAG+TGG - chr1_3:18845600-18845619 Msa0107830:intron 30.0%
!!! GATTCTTGTGATTTTGGTTA+AGG - chr1_3:18845805-18845824 Msa0107830:CDS 30.0%
!!! CTTTTCTTTTGCTTTGGAAT+AGG + chr1_3:18844262-18844281 None:intergenic 30.0%
!! CAACTACTTTTCTTTTGCTT+TGG + chr1_3:18844268-18844287 None:intergenic 30.0%
CAAAGCAAAAGAAAAGTAGT+TGG - chr1_3:18844266-18844285 Msa0107830:three_prime_UTR 30.0%
!!! AGAAAAGTAGTTGGTTTTCA+TGG - chr1_3:18844275-18844294 Msa0107830:three_prime_UTR 30.0%
TCTCTCATTATTCAAAGTCA+CGG - chr1_3:18844356-18844375 Msa0107830:exon 30.0%
ATATAGATACATACCTGTGT+TGG + chr1_3:18844490-18844509 None:intergenic 30.0%
!! TCATGAACTTGTTAATAGGT+TGG + chr1_3:18844523-18844542 None:intergenic 30.0%
! GTGTGGTAATTTGTGATAAA+TGG + chr1_3:18844677-18844696 None:intergenic 30.0%
! TATTTTACCTAAGGAAGGAA+GGG + chr1_3:18844767-18844786 None:intergenic 30.0%
!! TTAGGTTTTTGATTGTCGTT+TGG + chr1_3:18845458-18845477 None:intergenic 30.0%
!! CCCTAGTGATAATGATATTT+TGG - chr1_3:18845532-18845551 Msa0107830:intron 30.0%
CCCAAAATATCATTATCACT+AGG + chr1_3:18845536-18845555 None:intergenic 30.0%
!!! ATACCACGTTTTAGAAATAG+TGG - chr1_3:18845600-18845619 Msa0107830:intron 30.0%
!!! GATTCTTGTGATTTTGGTTA+AGG - chr1_3:18845805-18845824 Msa0107830:CDS 30.0%
AATGAAGTCAACGTCCAAAA+CGG - chr1_3:18844315-18844334 Msa0107830:three_prime_UTR 35.0%
! CTGTGTTGGTGTATAATAAG+GGG + chr1_3:18844476-18844495 None:intergenic 35.0%
! CCTGTGTTGGTGTATAATAA+GGG + chr1_3:18844477-18844496 None:intergenic 35.0%
! ACCTGTGTTGGTGTATAATA+AGG + chr1_3:18844478-18844497 None:intergenic 35.0%
TCTCAAAAATGTGTGGTAGT+TGG + chr1_3:18844651-18844670 None:intergenic 35.0%
ATGGTTCTCTCAAAAATGTG+TGG + chr1_3:18844658-18844677 None:intergenic 35.0%
! GTATTTTACCTAAGGAAGGA+AGG + chr1_3:18844768-18844787 None:intergenic 35.0%
! GTTAATGTTTGGTTCAGACA+AGG - chr1_3:18845325-18845344 Msa0107830:intron 35.0%
!!! ACGAACTTCGTACGTTTTTT+AGG + chr1_3:18845476-18845495 None:intergenic 35.0%
AGTTCGTATGATCCTATAGT+TGG - chr1_3:18845489-18845508 Msa0107830:intron 35.0%
AGTATGGACATTCCAACTAT+AGG + chr1_3:18845504-18845523 None:intergenic 35.0%
ATAGTTGGAATGTCCATACT+AGG - chr1_3:18845504-18845523 Msa0107830:intron 35.0%
!! ACACCACTATTTCTAAAACG+TGG + chr1_3:18845606-18845625 None:intergenic 35.0%
!!! CGTTTTAGAAATAGTGGTGT+TGG - chr1_3:18845606-18845625 Msa0107830:intron 35.0%
! TAGTGGTGTTGGAAATTATG+AGG - chr1_3:18845617-18845636 Msa0107830:intron 35.0%
GTTGGAAATTATGAGGAAGA+TGG - chr1_3:18845624-18845643 Msa0107830:intron 35.0%
TGATTATGGAAGGACTTCTT+GGG - chr1_3:18845706-18845725 Msa0107830:CDS 35.0%
!!! CTTGTGATTTTGGTTAAGGT+AGG - chr1_3:18845809-18845828 Msa0107830:CDS 35.0%
AATGAAGTCAACGTCCAAAA+CGG - chr1_3:18844315-18844334 Msa0107830:three_prime_UTR 35.0%
! CTGTGTTGGTGTATAATAAG+GGG + chr1_3:18844476-18844495 None:intergenic 35.0%
! CCTGTGTTGGTGTATAATAA+GGG + chr1_3:18844477-18844496 None:intergenic 35.0%
! ACCTGTGTTGGTGTATAATA+AGG + chr1_3:18844478-18844497 None:intergenic 35.0%
TCTCAAAAATGTGTGGTAGT+TGG + chr1_3:18844651-18844670 None:intergenic 35.0%
ATGGTTCTCTCAAAAATGTG+TGG + chr1_3:18844658-18844677 None:intergenic 35.0%
! GTATTTTACCTAAGGAAGGA+AGG + chr1_3:18844768-18844787 None:intergenic 35.0%
! GTTAATGTTTGGTTCAGACA+AGG - chr1_3:18845325-18845344 Msa0107830:intron 35.0%
!!! ACGAACTTCGTACGTTTTTT+AGG + chr1_3:18845476-18845495 None:intergenic 35.0%
AGTTCGTATGATCCTATAGT+TGG - chr1_3:18845489-18845508 Msa0107830:intron 35.0%
AGTATGGACATTCCAACTAT+AGG + chr1_3:18845504-18845523 None:intergenic 35.0%
ATAGTTGGAATGTCCATACT+AGG - chr1_3:18845504-18845523 Msa0107830:intron 35.0%
!! ACACCACTATTTCTAAAACG+TGG + chr1_3:18845606-18845625 None:intergenic 35.0%
!!! CGTTTTAGAAATAGTGGTGT+TGG - chr1_3:18845606-18845625 Msa0107830:intron 35.0%
! TAGTGGTGTTGGAAATTATG+AGG - chr1_3:18845617-18845636 Msa0107830:intron 35.0%
GTTGGAAATTATGAGGAAGA+TGG - chr1_3:18845624-18845643 Msa0107830:intron 35.0%
TGATTATGGAAGGACTTCTT+GGG - chr1_3:18845706-18845725 Msa0107830:CDS 35.0%
!!! CTTGTGATTTTGGTTAAGGT+AGG - chr1_3:18845809-18845828 Msa0107830:CDS 35.0%
!!! GTAGTTGGTTTTCATGGAGA+TGG - chr1_3:18844281-18844300 Msa0107830:three_prime_UTR 40.0%
TGAGAGAATGAAGCTTCAAG+CGG + chr1_3:18844343-18844362 None:intergenic 40.0%
CCCTTATTATACACCAACAC+AGG - chr1_3:18844474-18844493 Msa0107830:CDS 40.0%
ACAGAAGACACACATGAACA+AGG - chr1_3:18845372-18845391 Msa0107830:intron 40.0%
ACCAAAACGACAAGAACGAA+GGG - chr1_3:18845413-18845432 Msa0107830:intron 40.0%
CCAAGCTGAAGTACATAGAA+TGG + chr1_3:18845571-18845590 None:intergenic 40.0%
CCATTCTATGTACTTCAGCT+TGG - chr1_3:18845568-18845587 Msa0107830:intron 40.0%
!!! TGACGTGGATTTTGATTCTG+AGG - chr1_3:18845668-18845687 Msa0107830:CDS 40.0%
GTGATTATGGAAGGACTTCT+TGG - chr1_3:18845705-18845724 Msa0107830:CDS 40.0%
CTTCTTGGGAGAAATAATCG+AGG - chr1_3:18845720-18845739 Msa0107830:CDS 40.0%
TGTTTGATCATGTCGTCTGT+TGG - chr1_3:18845845-18845864 Msa0107830:CDS 40.0%
!!! GTAGTTGGTTTTCATGGAGA+TGG - chr1_3:18844281-18844300 Msa0107830:three_prime_UTR 40.0%
TGAGAGAATGAAGCTTCAAG+CGG + chr1_3:18844343-18844362 None:intergenic 40.0%
CCCTTATTATACACCAACAC+AGG - chr1_3:18844474-18844493 Msa0107830:CDS 40.0%
ACAGAAGACACACATGAACA+AGG - chr1_3:18845372-18845391 Msa0107830:intron 40.0%
ACCAAAACGACAAGAACGAA+GGG - chr1_3:18845413-18845432 Msa0107830:intron 40.0%
CCAAGCTGAAGTACATAGAA+TGG + chr1_3:18845571-18845590 None:intergenic 40.0%
CCATTCTATGTACTTCAGCT+TGG - chr1_3:18845568-18845587 Msa0107830:intron 40.0%
!!! TGACGTGGATTTTGATTCTG+AGG - chr1_3:18845668-18845687 Msa0107830:CDS 40.0%
GTGATTATGGAAGGACTTCT+TGG - chr1_3:18845705-18845724 Msa0107830:CDS 40.0%
CTTCTTGGGAGAAATAATCG+AGG - chr1_3:18845720-18845739 Msa0107830:CDS 40.0%
TGTTTGATCATGTCGTCTGT+TGG - chr1_3:18845845-18845864 Msa0107830:CDS 40.0%
ATTGACGGTGGAGAATTGGT+TGG + chr1_3:18844424-18844443 None:intergenic 45.0%
! TGGTGTATAATAAGGGGTGC+CGG + chr1_3:18844470-18844489 None:intergenic 45.0%
AATACGACCCTTCCTTCCTT+AGG - chr1_3:18844757-18844776 Msa0107830:CDS 45.0%
! TGTTTGGTTCAGACAAGGCA+TGG - chr1_3:18845330-18845349 Msa0107830:intron 45.0%
!!! TCTTGTCGTTTTGGTCGTGT+TGG + chr1_3:18845408-18845427 None:intergenic 45.0%
GACCAAAACGACAAGAACGA+AGG - chr1_3:18845412-18845431 Msa0107830:intron 45.0%
!! ACCCTTCGTTCTTGTCGTTT+TGG + chr1_3:18845417-18845436 None:intergenic 45.0%
TTTGGTTAAGGTAGGCCAGT+AGG - chr1_3:18845817-18845836 Msa0107830:CDS 45.0%
TGATCAAACAACCCACCTAC+TGG + chr1_3:18845835-18845854 None:intergenic 45.0%
TTGATCATGTCGTCTGTTGG+TGG - chr1_3:18845848-18845867 Msa0107830:CDS 45.0%
ATTGACGGTGGAGAATTGGT+TGG + chr1_3:18844424-18844443 None:intergenic 45.0%
! TGGTGTATAATAAGGGGTGC+CGG + chr1_3:18844470-18844489 None:intergenic 45.0%
AATACGACCCTTCCTTCCTT+AGG - chr1_3:18844757-18844776 Msa0107830:CDS 45.0%
! TGTTTGGTTCAGACAAGGCA+TGG - chr1_3:18845330-18845349 Msa0107830:intron 45.0%
!!! TCTTGTCGTTTTGGTCGTGT+TGG + chr1_3:18845408-18845427 None:intergenic 45.0%
GACCAAAACGACAAGAACGA+AGG - chr1_3:18845412-18845431 Msa0107830:intron 45.0%
!! ACCCTTCGTTCTTGTCGTTT+TGG + chr1_3:18845417-18845436 None:intergenic 45.0%
TTTGGTTAAGGTAGGCCAGT+AGG - chr1_3:18845817-18845836 Msa0107830:CDS 45.0%
TGATCAAACAACCCACCTAC+TGG + chr1_3:18845835-18845854 None:intergenic 45.0%
TTGATCATGTCGTCTGTTGG+TGG - chr1_3:18845848-18845867 Msa0107830:CDS 45.0%
!!! ATTTTTTTTAATTATGTTAT+AGG + chr1_3:18844601-18844620 None:intergenic 5.0%
!!! AATAAATAATATTTAAAACA+TGG + chr1_3:18845299-18845318 None:intergenic 5.0%
!!! ATTTTTTTTAATTATGTTAT+AGG + chr1_3:18844601-18844620 None:intergenic 5.0%
!!! AATAAATAATATTTAAAACA+TGG + chr1_3:18845299-18845318 None:intergenic 5.0%
CGGAATTGACGGTGGAGAAT+TGG + chr1_3:18844428-18844447 None:intergenic 50.0%
!! GTGTATAATAAGGGGTGCCG+GGG + chr1_3:18844468-18844487 None:intergenic 50.0%
!! GGTGTATAATAAGGGGTGCC+GGG + chr1_3:18844469-18844488 None:intergenic 50.0%
CACTAGGGTCACACCTAGTA+TGG + chr1_3:18845520-18845539 None:intergenic 50.0%
GTTAAGGTAGGCCAGTAGGT+GGG - chr1_3:18845821-18845840 Msa0107830:CDS 50.0%
CGGAATTGACGGTGGAGAAT+TGG + chr1_3:18844428-18844447 None:intergenic 50.0%
!! GTGTATAATAAGGGGTGCCG+GGG + chr1_3:18844468-18844487 None:intergenic 50.0%
!! GGTGTATAATAAGGGGTGCC+GGG + chr1_3:18844469-18844488 None:intergenic 50.0%
CACTAGGGTCACACCTAGTA+TGG + chr1_3:18845520-18845539 None:intergenic 50.0%
GTTAAGGTAGGCCAGTAGGT+GGG - chr1_3:18845821-18845840 Msa0107830:CDS 50.0%
! AGCTTCAAGCGGCACCGTTT+TGG + chr1_3:18844332-18844351 None:intergenic 55.0%
ACCGTCAATTCCGCCGTCTA+CGG - chr1_3:18844435-18844454 Msa0107830:CDS 55.0%
ACCGTAGACGGCGGAATTGA+CGG + chr1_3:18844439-18844458 None:intergenic 55.0%
GGTTAAGGTAGGCCAGTAGG+TGG - chr1_3:18845820-18845839 Msa0107830:CDS 55.0%
! AGCTTCAAGCGGCACCGTTT+TGG + chr1_3:18844332-18844351 None:intergenic 55.0%
ACCGTCAATTCCGCCGTCTA+CGG - chr1_3:18844435-18844454 Msa0107830:CDS 55.0%
ACCGTAGACGGCGGAATTGA+CGG + chr1_3:18844439-18844458 None:intergenic 55.0%
GGTTAAGGTAGGCCAGTAGG+TGG - chr1_3:18845820-18845839 Msa0107830:CDS 55.0%
GTAGACGGCGGAATTGACGG+TGG + chr1_3:18844436-18844455 None:intergenic 60.0%
GTCAATTCCGCCGTCTACGG+TGG - chr1_3:18844438-18844457 Msa0107830:CDS 60.0%
GTAGACGGCGGAATTGACGG+TGG + chr1_3:18844436-18844455 None:intergenic 60.0%
GTCAATTCCGCCGTCTACGG+TGG - chr1_3:18844438-18844457 Msa0107830:CDS 60.0%
!! GGGAGCACCACCGTAGACGG+CGG + chr1_3:18844448-18844467 None:intergenic 70.0%
!! CCGGGGAGCACCACCGTAGA+CGG + chr1_3:18844451-18844470 None:intergenic 70.0%
CCGTCTACGGTGGTGCTCCC+CGG - chr1_3:18844448-18844467 Msa0107830:CDS 70.0%
!! GGGAGCACCACCGTAGACGG+CGG + chr1_3:18844448-18844467 None:intergenic 70.0%
!! CCGGGGAGCACCACCGTAGA+CGG + chr1_3:18844451-18844470 None:intergenic 70.0%
CCGTCTACGGTGGTGCTCCC+CGG - chr1_3:18844448-18844467 Msa0107830:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 18844145 18845978 18844145 ID=Msa0107830;Name=Msa0107830
chr1_3 mRNA 18844145 18845978 18844145 ID=Msa0107830-mRNA-1;Parent=Msa0107830;Name=Msa0107830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|223|254
chr1_3 exon 18844145 18844781 18844145 ID=Msa0107830-mRNA-1:exon:6866;Parent=Msa0107830-mRNA-1
chr1_3 exon 18845628 18845978 18845628 ID=Msa0107830-mRNA-1:exon:6865;Parent=Msa0107830-mRNA-1
chr1_3 CDS 18845628 18845978 18845628 ID=Msa0107830-mRNA-1:cds;Parent=Msa0107830-mRNA-1
chr1_3 CDS 18844368 18844781 18844368 ID=Msa0107830-mRNA-1:cds;Parent=Msa0107830-mRNA-1
chr1_3 three_prime_UTR 18844145 18844367 18844145 ID=Msa0107830-mRNA-1:three_prime_utr;Parent=Msa0107830-mRNA-1
Gene Sequence

>Msa0107830

ATGGCCAAAACCAAAAACTCAAAATCTAAAACCTCTATTTTTCTATGTTGCTTTAGATCACACATACCAAATAAACCTTCAACAAATGATTCATCAAACGTTAAAGTATCTAATCCTATTCCAAAGCAAAAGAAAAGTAGTTGGTTTTCATGGAGATGGATTAAAATGAAAATGAAGTCAACGTCCAAAACGGTGCCGCTTGAAGCTTCATTCTCTCATTATTCAAAGTCACGGTCAAAGTTTTTAACTCTTCATCATAAATCTAAAAAAACTCTACCAACCAATTCTCCACCGTCAATTCCGCCGTCTACGGTGGTGCTCCCCGGCACCCCTTATTATACACCAACACAGACAAGGCATGGTCCAATTGATGACATTATTACAGAAGACACACATGAACAAGGTAGAACTACTCCAACACGACCAAAACGACAAGAACGAAGGGTGTCGTCTACAACACAAAACCAAACGACAATCAAAAACCTAAAAAACGTACGAAGTTCGTATGATCCTATAGTTGGAATGTCCATACTAGGTGTGACCCTAGTGATAATGATATTTTGGGGTCGCTTTTGTGCCATTCTATGTACTTCAGCTTGGTTGTATTTTATACCACGTTTTAGAAATAGTGGTGTTGGAAATTATGAGGAAGATGGTGCCAAAATAATGTCAAAAAATGACGTGGATTTTGATTCTGAGGAGTATAAGAAAAAAGTGATTATGGAAGGACTTCTTGGGAGAAATAATCGAGGTAGTAACATATGA

Protein sequence

>Msa0107830

MAKTKNSKSKTSIFLCCFRSHIPNKPSTNDSSNVKVSNPIPKQKKSSWFSWRWIKMKMKSTSKTVPLEASFSHYSKSRSKFLTLHHKSKKTLPTNSPPSIPPSTVVLPGTPYYTPTQTRHGPIDDIITEDTHEQGRTTPTRPKRQERRVSSTTQNQTTIKNLKNVRSSYDPIVGMSILGVTLVIMIFWGRFCAILCTSAWLYFIPRFRNSGVGNYEEDGAKIMSKNDVDFDSEEYKKKVIMEGLLGRNNRGSNI*