Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129980 | XP_013469263.1 | 96.078 | 306 | 12 | 0 | 5 | 310 | 102 | 407 | 0.0 | 601 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129980 | sp|Q9FLC2|MO3_ARATH | 53.571 | 308 | 134 | 3 | 7 | 308 | 99 | 403 | 5.82e-117 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129980 | A0A072VNU6 | 96.078 | 306 | 12 | 0 | 5 | 310 | 102 | 407 | 0.0 | 601 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034860 | Msa0129980 | 0.985607 | 4.277675e-164 | -8.615850e-47 |
| Msa0051910 | Msa0129980 | 0.800372 | 1.486827e-48 | -8.615850e-47 |
| Msa0107830 | Msa0129980 | 0.817911 | 2.579995e-52 | -8.615850e-47 |
| Msa0111780 | Msa0129980 | 0.821877 | 3.195720e-53 | -8.615850e-47 |
| Msa0129980 | Msa0145050 | 0.814952 | 1.185144e-51 | -8.615850e-47 |
| Msa0129980 | Msa0370620 | 0.810680 | 1.021865e-50 | -8.615850e-47 |
| Msa0129980 | Msa0390200 | 0.812923 | 3.320826e-51 | -8.615850e-47 |
| Msa0129980 | Msa0561830 | 0.822830 | 1.919766e-53 | -8.615850e-47 |
| Msa0129980 | Msa0597820 | 0.803838 | 2.880171e-49 | -8.615850e-47 |
| Msa0129980 | Msa0655370 | 0.819915 | 9.036408e-53 | -8.615850e-47 |
| Msa0129980 | Msa0699170 | 0.800116 | 1.676273e-48 | -8.615850e-47 |
| Msa0129980 | Msa0809920 | 0.802038 | 6.781733e-49 | -8.615850e-47 |
| Msa0129980 | Msa0904590 | 0.810071 | 1.382784e-50 | -8.615850e-47 |
| Msa0129980 | Msa0936630 | 0.804426 | 2.173147e-49 | -8.615850e-47 |
| Msa0129980 | Msa1120960 | 0.810028 | 1.412965e-50 | -8.615850e-47 |
| Msa0129980 | Msa1316960 | 0.805970 | 1.032294e-49 | -8.615850e-47 |
| Msa0129980 | Msa1320160 | 0.805713 | 1.168745e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129980 | MtrunA17_Chr1g0197161 | 96.078 | 306 | 12 | 0 | 5 | 310 | 102 | 407 | 0.0 | 601 |
| Msa0129980 | MtrunA17_Chr1g0211141 | 82.951 | 305 | 52 | 0 | 5 | 309 | 94 | 398 | 8.39e-178 | 497 |
| Msa0129980 | MtrunA17_Chr1g0211171 | 80.000 | 310 | 58 | 1 | 5 | 310 | 101 | 410 | 3.50e-173 | 486 |
| Msa0129980 | MtrunA17_Chr1g0211181 | 75.410 | 305 | 75 | 0 | 5 | 309 | 100 | 404 | 3.41e-172 | 483 |
| Msa0129980 | MtrunA17_Chr1g0211151 | 74.026 | 308 | 74 | 2 | 5 | 309 | 102 | 406 | 7.29e-150 | 426 |
| Msa0129980 | MtrunA17_Chr5g0399671 | 37.063 | 286 | 173 | 3 | 5 | 289 | 134 | 413 | 3.29e-56 | 187 |
| Msa0129980 | MtrunA17_Chr5g0399661 | 35.082 | 305 | 188 | 4 | 8 | 309 | 133 | 430 | 7.47e-55 | 184 |
| Msa0129980 | MtrunA17_Chr4g0018001 | 32.314 | 229 | 145 | 3 | 87 | 310 | 16 | 239 | 4.05e-40 | 140 |
| Msa0129980 | MtrunA17_Chr4g0017981 | 35.404 | 161 | 101 | 2 | 151 | 310 | 1 | 159 | 2.56e-27 | 104 |
| Msa0129980 | MtrunA17_Chr5g0402211 | 27.559 | 254 | 171 | 7 | 9 | 259 | 182 | 425 | 2.43e-13 | 70.5 |
| Msa0129980 | MtrunA17_Chr8g0375081 | 24.806 | 258 | 173 | 7 | 9 | 259 | 187 | 430 | 3.94e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129980 | AT5G05320.1 | 53.571 | 308 | 134 | 3 | 7 | 308 | 99 | 403 | 5.92e-118 | 345 |
| Msa0129980 | AT4G38540.1 | 55.016 | 309 | 130 | 3 | 7 | 308 | 99 | 405 | 6.37e-109 | 323 |
| Msa0129980 | AT2G35660.2 | 36.842 | 304 | 182 | 4 | 8 | 308 | 24 | 320 | 1.74e-56 | 186 |
| Msa0129980 | AT2G35660.3 | 36.842 | 304 | 182 | 4 | 8 | 308 | 24 | 320 | 1.74e-56 | 186 |
| Msa0129980 | AT2G35660.1 | 36.842 | 304 | 182 | 4 | 8 | 308 | 138 | 434 | 2.41e-55 | 186 |
| Msa0129980 | AT4G15760.1 | 33.660 | 306 | 196 | 3 | 8 | 308 | 119 | 422 | 5.39e-55 | 184 |
| Msa0129980 | AT4G15760.2 | 33.660 | 306 | 196 | 3 | 8 | 308 | 131 | 434 | 7.53e-55 | 184 |
| Msa0129980 | AT2G29720.1 | 36.713 | 286 | 173 | 3 | 8 | 292 | 136 | 414 | 3.06e-52 | 177 |
| Msa0129980 | AT4G15765.1 | 31.606 | 193 | 120 | 2 | 8 | 198 | 69 | 251 | 1.29e-27 | 108 |
| Msa0129980 | AT4G15765.2 | 29.070 | 172 | 121 | 1 | 27 | 198 | 8 | 178 | 2.09e-24 | 98.2 |
| Msa0129980 | AT4G15765.5 | 29.070 | 172 | 121 | 1 | 27 | 198 | 8 | 178 | 2.09e-24 | 98.2 |
| Msa0129980 | AT4G15765.3 | 29.070 | 172 | 121 | 1 | 27 | 198 | 8 | 178 | 2.09e-24 | 98.2 |
| Msa0129980 | AT4G15765.4 | 29.070 | 172 | 121 | 1 | 27 | 198 | 8 | 178 | 2.09e-24 | 98.2 |
Find 90 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAAAGGTTGTTTCTATTC+AGG | 0.208741 | 1_3:+60055581 | Msa0129980:CDS |
| CTTCTTTAGAGATAAAATTT+TGG | 0.212850 | 1_3:+60058006 | Msa0129980:CDS |
| TGATACCAAATAATTGATTT+AGG | 0.238192 | 1_3:-60058288 | None:intergenic |
| GTTGTTTCTATTCAGGAATC+TGG | 0.279466 | 1_3:+60055588 | Msa0129980:CDS |
| ATCTTCTTCCTTCAATCTCT+TGG | 0.311658 | 1_3:-60057858 | None:intergenic |
| TGGTGATGCTTTACACTCTA+TGG | 0.315004 | 1_3:+60057757 | Msa0129980:CDS |
| AAAGGAAATGTTTGTGTTGT+TGG | 0.333037 | 1_3:+60057737 | Msa0129980:CDS |
| AAGCATTCACCTTGGCTTGT+AGG | 0.340962 | 1_3:-60056442 | None:intergenic |
| TCAGCAAGGTGGTTCAAAAT+TGG | 0.350501 | 1_3:+60057979 | Msa0129980:CDS |
| TTCAAGGAGGCCTCTTACAC+AGG | 0.357841 | 1_3:+60056277 | Msa0129980:CDS |
| ATGAGGTTCGTTGTGTTAGA+AGG | 0.362637 | 1_3:+60055502 | Msa0129980:CDS |
| GTAATGAGAAGGGTGTTTAC+TGG | 0.363036 | 1_3:+60056404 | Msa0129980:CDS |
| TCTAACACAACGAACCTCAT+AGG | 0.372306 | 1_3:-60055499 | None:intergenic |
| AAATCCATGGGAGCTCATAA+TGG | 0.391533 | 1_3:+60057703 | Msa0129980:CDS |
| AATAATTGATTTAGGTGTCT+TGG | 0.398641 | 1_3:-60058280 | None:intergenic |
| ATTGCTAGATCTTATATTGT+GGG | 0.402458 | 1_3:+60057950 | Msa0129980:CDS |
| CATTGGTTCCAACTCATGAT+TGG | 0.411602 | 1_3:-60056335 | None:intergenic |
| GGGTGTTCTGCTTTAGAAGA+TGG | 0.413811 | 1_3:+60057800 | Msa0129980:CDS |
| GGCAAAGTGGCTAGGCTTCA+AGG | 0.413872 | 1_3:+60056261 | Msa0129980:CDS |
| AATATGCAAAGGAGAGAAGA+TGG | 0.415258 | 1_3:+60057912 | Msa0129980:CDS |
| GCTTCTGATTTATTCTTTCA+CGG | 0.427429 | 1_3:-60058245 | None:intergenic |
| TAACATAAACCATGCTGAAA+AGG | 0.437958 | 1_3:-60058162 | None:intergenic |
| GGTGTTCTGCTTTAGAAGAT+GGG | 0.442446 | 1_3:+60057801 | Msa0129980:CDS |
| AATCCATGGGAGCTCATAAT+GGG | 0.446052 | 1_3:+60057704 | Msa0129980:CDS |
| TTCATGCAATACTTTGGTAA+AGG | 0.452134 | 1_3:+60056358 | Msa0129980:CDS |
| TGTTAGAAGGCAGTTATTGT+TGG | 0.455761 | 1_3:+60055515 | Msa0129980:CDS |
| CCAATGTTCATGCAATACTT+TGG | 0.461042 | 1_3:+60056352 | Msa0129980:CDS |
| TGCATATCTCCCTGTGTAAG+AGG | 0.462118 | 1_3:-60056287 | None:intergenic |
| GATATTCTCCAAGAGATTGA+AGG | 0.462676 | 1_3:+60057850 | Msa0129980:CDS |
| AGATCTAGCAATGAGATCAA+TGG | 0.477852 | 1_3:-60057939 | None:intergenic |
| ACACAGGGAGATATGCAGCC+AGG | 0.479595 | 1_3:+60056293 | Msa0129980:CDS |
| ACATATTCTTTCAGTTTAGA+CGG | 0.487971 | 1_3:-60057587 | None:intergenic |
| GCAATTCAAAAGGTATTGAT+CGG | 0.491066 | 1_3:+60056214 | Msa0129980:intron |
| TTTCCCATTATGAGCTCCCA+TGG | 0.491874 | 1_3:-60057707 | None:intergenic |
| CAGACTTCTTCAACAACTGA+TGG | 0.492041 | 1_3:-60058042 | None:intergenic |
| CAACCTTTGACAAGTACCTA+AGG | 0.500469 | 1_3:-60055569 | None:intergenic |
| CATTGCTAGATCTTATATTG+TGG | 0.505025 | 1_3:+60057949 | Msa0129980:CDS |
| AAGATACTCCATCTTGCTGA+TGG | 0.505178 | 1_3:+60055618 | Msa0129980:CDS |
| CAATTCAAAAGGTATTGATC+GGG | 0.505522 | 1_3:+60056215 | Msa0129980:intron |
| TAAACACCCTTCTCATTACA+TGG | 0.506474 | 1_3:-60056400 | None:intergenic |
| CCAAAGTATTGCATGAACAT+TGG | 0.507417 | 1_3:-60056352 | None:intergenic |
| CATGGATTTCTATATCTCAA+TGG | 0.511700 | 1_3:-60057689 | None:intergenic |
| AGCTTCCAAGTGGCACCCTT+AGG | 0.512169 | 1_3:+60055553 | Msa0129980:CDS |
| TATATCTCAATGGAGCTGAA+TGG | 0.513344 | 1_3:-60057679 | None:intergenic |
| CTAACACAACGAACCTCATA+GGG | 0.516396 | 1_3:-60055498 | None:intergenic |
| CATATTCTTTCAGTTTAGAC+GGG | 0.516764 | 1_3:-60057586 | None:intergenic |
| TGGCACCTGATCTTGCCCAA+GGG | 0.522171 | 1_3:+60057777 | Msa0129980:CDS |
| CATTCATTACAACATATGAA+TGG | 0.522623 | 1_3:-60058207 | None:intergenic |
| ATGGCACCTGATCTTGCCCA+AGG | 0.528780 | 1_3:+60057776 | Msa0129980:CDS |
| CACCCTTAGGTACTTGTCAA+AGG | 0.531818 | 1_3:+60055566 | Msa0129980:CDS |
| GAATACAAAATGATTGAGGA+AGG | 0.532351 | 1_3:+60057881 | Msa0129980:CDS |
| TTCTGCTTTAGAAGATGGGG+TGG | 0.533854 | 1_3:+60057805 | Msa0129980:CDS |
| CTTGCACTCTGAATAGCCCC+TGG | 0.543356 | 1_3:-60056311 | None:intergenic |
| CACAGGGAGATATGCAGCCA+GGG | 0.545096 | 1_3:+60056294 | Msa0129980:CDS |
| CACCTGATCTTGCCCAAGGG+GGG | 0.545355 | 1_3:+60057780 | Msa0129980:CDS |
| AAGGTATTGATCGGGTGTGA+TGG | 0.545974 | 1_3:+60056223 | Msa0129980:intron |
| TGGTTGTTCCATCAGCAAGA+TGG | 0.546204 | 1_3:-60055626 | None:intergenic |
| CATTGAGATATAGAAATCCA+TGG | 0.548958 | 1_3:+60057690 | Msa0129980:CDS |
| CACTTGGAAGCTCACTAGCA+AGG | 0.553316 | 1_3:-60055542 | None:intergenic |
| TCTTCAAAAGTAAATAACAT+TGG | 0.559754 | 1_3:-60058129 | None:intergenic |
| AGATGAATACAAAATGATTG+AGG | 0.564021 | 1_3:+60057877 | Msa0129980:CDS |
| GTCATGCAGTGGACCCTATG+AGG | 0.565252 | 1_3:+60055485 | Msa0129980:CDS |
| TCTGTGGTGGCAAAGTGGCT+AGG | 0.569965 | 1_3:+60056253 | Msa0129980:CDS |
| GGCACCTGATCTTGCCCAAG+GGG | 0.572377 | 1_3:+60057778 | Msa0129980:CDS |
| AGCTCTTCCATGTAATGAGA+AGG | 0.572389 | 1_3:+60056393 | Msa0129980:CDS |
| TCATATGTTGTAATGAATGA+TGG | 0.572530 | 1_3:+60058211 | Msa0129980:three_prime_UTR |
| GTGTTCTGCTTTAGAAGATG+GGG | 0.575129 | 1_3:+60057802 | Msa0129980:CDS |
| GTGCAAGACCAATCATGAGT+TGG | 0.580400 | 1_3:+60056327 | Msa0129980:CDS |
| ACATGGACTCCTACAAGCCA+AGG | 0.587321 | 1_3:+60056433 | Msa0129980:CDS |
| ATGAAAGATCTAACATCACT+TGG | 0.587994 | 1_3:-60057632 | None:intergenic |
| GCACCTGATCTTGCCCAAGG+GGG | 0.597126 | 1_3:+60057779 | Msa0129980:CDS |
| ACTTGGAAGCTCACTAGCAA+GGG | 0.600879 | 1_3:-60055541 | None:intergenic |
| ATAATGGGAAATATTAGCAA+AGG | 0.604077 | 1_3:+60057719 | Msa0129980:CDS |
| AGACTTCTTCAACAACTGAT+GGG | 0.608711 | 1_3:-60058041 | None:intergenic |
| GCTCTTCCATGTAATGAGAA+GGG | 0.614741 | 1_3:+60056394 | Msa0129980:CDS |
| AGGTTTGAAGAAATATGCAA+AGG | 0.618242 | 1_3:+60057901 | Msa0129980:CDS |
| ATTGAGATATAGAAATCCAT+GGG | 0.624711 | 1_3:+60057691 | Msa0129980:CDS |
| AAGTACCTAAGGGTGCCACT+TGG | 0.634329 | 1_3:-60055558 | None:intergenic |
| TCAAGGAGGCCTCTTACACA+GGG | 0.635552 | 1_3:+60056278 | Msa0129980:CDS |
| AACCTTTGACAAGTACCTAA+GGG | 0.636873 | 1_3:-60055568 | None:intergenic |
| GTGGGCTCTATTCAGCAAGG+TGG | 0.640123 | 1_3:+60057968 | Msa0129980:CDS |
| ATTGTGGGCTCTATTCAGCA+AGG | 0.655921 | 1_3:+60057965 | Msa0129980:CDS |
| TGATGGAGTTAACTCTGTGG+TGG | 0.668875 | 1_3:+60056240 | Msa0129980:CDS |
| TTAACTCTGTGGTGGCAAAG+TGG | 0.674089 | 1_3:+60056248 | Msa0129980:CDS |
| CTTGCTAGTGAGCTTCCAAG+TGG | 0.678158 | 1_3:+60055543 | Msa0129980:CDS |
| TGGAACAACCATCAAAACCA+AGG | 0.693752 | 1_3:+60055638 | Msa0129980:CDS |
| ACAGGGAGATATGCAGCCAG+GGG | 0.725743 | 1_3:+60056295 | Msa0129980:CDS |
| GTGTGATGGAGTTAACTCTG+TGG | 0.763284 | 1_3:+60056237 | Msa0129980:CDS |
| ATCTTTCATAGAAAACACTG+AGG | 0.765975 | 1_3:+60057646 | Msa0129980:CDS |
| AAAGTGGCTAGGCTTCAAGG+AGG | 0.813713 | 1_3:+60056264 | Msa0129980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTTTAATACTTATATA+AGG | + | chr1_3:60056985-60057004 | Msa0129980:intron | 10.0% |
| !!! | TGTTATTAGTTTTTTTTTTT+TGG | - | chr1_3:60057353-60057372 | None:intergenic | 10.0% |
| !! | AAAACTAATAACATTAAATA+TGG | + | chr1_3:60057360-60057379 | Msa0129980:intron | 10.0% |
| !! | TTCAAACAAATAATTTAATT+TGG | - | chr1_3:60057510-60057529 | None:intergenic | 10.0% |
| !!! | CAAATATATAATTCATTTTA+TGG | - | chr1_3:60057534-60057553 | None:intergenic | 10.0% |
| !!! | TTTTAAACTAGGAAAATTAA+CGG | + | chr1_3:60055752-60055771 | Msa0129980:intron | 15.0% |
| !! | AGATAAATATTATTCAATGA+AGG | - | chr1_3:60056128-60056147 | None:intergenic | 15.0% |
| !!! | ACTTGCATTTATTTATTTTT+TGG | - | chr1_3:60057205-60057224 | None:intergenic | 15.0% |
| !! | AAAAAATAAATAAATGCAAG+TGG | + | chr1_3:60057204-60057223 | Msa0129980:intron | 15.0% |
| !!! | GACTAATTTTAATTTTTTGA+TGG | + | chr1_3:60057271-60057290 | Msa0129980:intron | 15.0% |
| !! | AAGATGATATATATGTATCA+GGG | - | chr1_3:60056917-60056936 | None:intergenic | 20.0% |
| !!! | AAAGTATTAAAGTTCTATGT+TGG | - | chr1_3:60056954-60056973 | None:intergenic | 20.0% |
| !! | TAATCAAATAAATATGCAAG+TGG | + | chr1_3:60057172-60057191 | Msa0129980:intron | 20.0% |
| !!! | CTTCTTTAGAGATAAAATTT+TGG | + | chr1_3:60058006-60058025 | Msa0129980:CDS | 20.0% |
| !! | TCTTCAAAAGTAAATAACAT+TGG | - | chr1_3:60058132-60058151 | None:intergenic | 20.0% |
| ! | ACACTTAATATTGTTTACCT+TGG | - | chr1_3:60055658-60055677 | None:intergenic | 25.0% |
| !!! | CTTTCAAGTTTCAACTAAAA+TGG | - | chr1_3:60055884-60055903 | None:intergenic | 25.0% |
| !! | TTGAACTTTTTGCTTTCAAA+AGG | - | chr1_3:60055939-60055958 | None:intergenic | 25.0% |
| ! | TTATAACTTCAATTGTTACG+TGG | + | chr1_3:60056185-60056204 | Msa0129980:intron | 25.0% |
| ! | TGCTCATTTAGAAATAAGAT+TGG | - | chr1_3:60056471-60056490 | None:intergenic | 25.0% |
| !! | TCAAATTTAGGACAACAATA+TGG | - | chr1_3:60056698-60056717 | None:intergenic | 25.0% |
| ! | ATATTGTTGTCCTAAATTTG+AGG | + | chr1_3:60056697-60056716 | Msa0129980:intron | 25.0% |
| ! | TATTGTTGTCCTAAATTTGA+GGG | + | chr1_3:60056698-60056717 | Msa0129980:intron | 25.0% |
| ! | GATTGTAGGATTTATATATG+TGG | - | chr1_3:60056731-60056750 | None:intergenic | 25.0% |
| ! | AATGATGATAACATGATAGT+TGG | - | chr1_3:60056823-60056842 | None:intergenic | 25.0% |
| !! | ATTTAAGATGGTATCAAAGT+CGG | - | chr1_3:60056849-60056868 | None:intergenic | 25.0% |
| ! | CAAGATGATATATATGTATC+AGG | - | chr1_3:60056918-60056937 | None:intergenic | 25.0% |
| ! | ACGTTATAAAATTTGTCTCA+TGG | + | chr1_3:60057026-60057045 | Msa0129980:intron | 25.0% |
| ! | CGTTATAAAATTTGTCTCAT+GGG | + | chr1_3:60057027-60057046 | Msa0129980:intron | 25.0% |
| ! | TAGTTTACTCACTATTTGAA+CGG | + | chr1_3:60057300-60057319 | Msa0129980:intron | 25.0% |
| ! | TTTGGATATGCAAAAGAAAA+GGG | - | chr1_3:60057492-60057511 | None:intergenic | 25.0% |
| ! | ATTTGGATATGCAAAAGAAA+AGG | - | chr1_3:60057493-60057512 | None:intergenic | 25.0% |
| ! | ACATATTCTTTCAGTTTAGA+CGG | - | chr1_3:60057590-60057609 | None:intergenic | 25.0% |
| ! | ATTGAGATATAGAAATCCAT+GGG | + | chr1_3:60057691-60057710 | Msa0129980:CDS | 25.0% |
| !! | ATAATGGGAAATATTAGCAA+AGG | + | chr1_3:60057719-60057738 | Msa0129980:CDS | 25.0% |
| ! | AGATGAATACAAAATGATTG+AGG | + | chr1_3:60057877-60057896 | Msa0129980:CDS | 25.0% |
| ! | ATTGCTAGATCTTATATTGT+GGG | + | chr1_3:60057950-60057969 | Msa0129980:CDS | 25.0% |
| !!! | TTTATTTTTCCTTTTCAGCA+TGG | + | chr1_3:60058153-60058172 | Msa0129980:three_prime_UTR | 25.0% |
| ! | CATTCATTACAACATATGAA+TGG | - | chr1_3:60058210-60058229 | None:intergenic | 25.0% |
| ! | TCATATGTTGTAATGAATGA+TGG | + | chr1_3:60058211-60058230 | Msa0129980:three_prime_UTR | 25.0% |
| !!! | ATTGTTTACCTTGGTTTTGA+TGG | - | chr1_3:60055649-60055668 | None:intergenic | 30.0% |
| TAAGTGTGACATATACAACA+AGG | + | chr1_3:60055671-60055690 | Msa0129980:intron | 30.0% | |
| !! | GCAATTCAAAAGGTATTGAT+CGG | + | chr1_3:60056214-60056233 | Msa0129980:intron | 30.0% |
| !! | CAATTCAAAAGGTATTGATC+GGG | + | chr1_3:60056215-60056234 | Msa0129980:intron | 30.0% |
| TTCATGCAATACTTTGGTAA+AGG | + | chr1_3:60056358-60056377 | Msa0129980:CDS | 30.0% | |
| !!! | GTGTTTACTGGTTTTTTACA+TGG | + | chr1_3:60056416-60056435 | Msa0129980:CDS | 30.0% |
| AAAGCTAACTCATTAGATGA+TGG | + | chr1_3:60056568-60056587 | Msa0129980:intron | 30.0% | |
| GTAGGATTTATATATGTGGT+AGG | - | chr1_3:60056727-60056746 | None:intergenic | 30.0% | |
| ATAACATGATAGTTGGATCA+AGG | - | chr1_3:60056816-60056835 | None:intergenic | 30.0% | |
| ! | TTTAAGATGGTATCAAAGTC+GGG | - | chr1_3:60056848-60056867 | None:intergenic | 30.0% |
| ACAAGTTAGATCTAAGAATG+AGG | + | chr1_3:60056888-60056907 | Msa0129980:intron | 30.0% | |
| TTCTATGAAGAAGATGAAGT+TGG | - | chr1_3:60057078-60057097 | None:intergenic | 30.0% | |
| ! | AATGTTGCTTGTATTCAAGA+AGG | + | chr1_3:60057457-60057476 | Msa0129980:intron | 30.0% |
| ! | ATGTTGCTTGTATTCAAGAA+GGG | + | chr1_3:60057458-60057477 | Msa0129980:intron | 30.0% |
| CATATTCTTTCAGTTTAGAC+GGG | - | chr1_3:60057589-60057608 | None:intergenic | 30.0% | |
| ATGAAAGATCTAACATCACT+TGG | - | chr1_3:60057635-60057654 | None:intergenic | 30.0% | |
| ATCTTTCATAGAAAACACTG+AGG | + | chr1_3:60057646-60057665 | Msa0129980:CDS | 30.0% | |
| CATGGATTTCTATATCTCAA+TGG | - | chr1_3:60057692-60057711 | None:intergenic | 30.0% | |
| CATTGAGATATAGAAATCCA+TGG | + | chr1_3:60057690-60057709 | Msa0129980:CDS | 30.0% | |
| AAAGGAAATGTTTGTGTTGT+TGG | + | chr1_3:60057737-60057756 | Msa0129980:CDS | 30.0% | |
| GAATACAAAATGATTGAGGA+AGG | + | chr1_3:60057881-60057900 | Msa0129980:CDS | 30.0% | |
| AGGTTTGAAGAAATATGCAA+AGG | + | chr1_3:60057901-60057920 | Msa0129980:CDS | 30.0% | |
| CATTGCTAGATCTTATATTG+TGG | + | chr1_3:60057949-60057968 | Msa0129980:CDS | 30.0% | |
| TAACATAAACCATGCTGAAA+AGG | - | chr1_3:60058165-60058184 | None:intergenic | 30.0% | |
| GCTTCTGATTTATTCTTTCA+CGG | - | chr1_3:60058248-60058267 | None:intergenic | 30.0% | |
| TGTTAGAAGGCAGTTATTGT+TGG | + | chr1_3:60055515-60055534 | Msa0129980:CDS | 35.0% | |
| AACCTTTGACAAGTACCTAA+GGG | - | chr1_3:60055571-60055590 | None:intergenic | 35.0% | |
| !! | GTCAAAGGTTGTTTCTATTC+AGG | + | chr1_3:60055581-60055600 | Msa0129980:CDS | 35.0% |
| !! | GTTGTTTCTATTCAGGAATC+TGG | + | chr1_3:60055588-60055607 | Msa0129980:CDS | 35.0% |
| GGCAAGATACATATTTCTTG+TGG | + | chr1_3:60055692-60055711 | Msa0129980:intron | 35.0% | |
| TATCACATATTCCTCACACT+TGG | + | chr1_3:60055729-60055748 | Msa0129980:intron | 35.0% | |
| ! | CTAGTTTAAAACCAAGTGTG+AGG | - | chr1_3:60055743-60055762 | None:intergenic | 35.0% |
| !!! | CTCACACTTGGTTTTAAACT+AGG | + | chr1_3:60055741-60055760 | Msa0129980:intron | 35.0% |
| !! | CCAAAGTATTGCATGAACAT+TGG | - | chr1_3:60056355-60056374 | None:intergenic | 35.0% |
| CCAATGTTCATGCAATACTT+TGG | + | chr1_3:60056352-60056371 | Msa0129980:CDS | 35.0% | |
| !!! | TTTGGTAAAGGTTTTAGAGC+TGG | + | chr1_3:60056370-60056389 | Msa0129980:CDS | 35.0% |
| TAAACACCCTTCTCATTACA+TGG | - | chr1_3:60056403-60056422 | None:intergenic | 35.0% | |
| AAGCTAGCTAACACTTTGTT+TGG | + | chr1_3:60056509-60056528 | Msa0129980:intron | 35.0% | |
| GGTTGTGAAAATAAAGTGAG+AGG | + | chr1_3:60056530-60056549 | Msa0129980:intron | 35.0% | |
| ATGTGTATAAGTAAGTGCTC+GGG | - | chr1_3:60056596-60056615 | None:intergenic | 35.0% | |
| GATGTGTATAAGTAAGTGCT+CGG | - | chr1_3:60056597-60056616 | None:intergenic | 35.0% | |
| AGACACATAGAATCCATGTT+GGG | - | chr1_3:60056670-60056689 | None:intergenic | 35.0% | |
| TCTAACATTGTCTAGGTTTC+TGG | - | chr1_3:60056753-60056772 | None:intergenic | 35.0% | |
| ATCAGAGTCTAACATTGTCT+AGG | - | chr1_3:60056760-60056779 | None:intergenic | 35.0% | |
| GATACCATCTTAAATGAACC+TGG | + | chr1_3:60056854-60056873 | Msa0129980:intron | 35.0% | |
| AGATCCAGGTTCATTTAAGA+TGG | - | chr1_3:60056861-60056880 | None:intergenic | 35.0% | |
| ! | GAAGAAGATGAAGTTGGTTA+CGG | - | chr1_3:60057072-60057091 | None:intergenic | 35.0% |
| GTGCAAGCAAACTGAAATTA+GGG | - | chr1_3:60057102-60057121 | None:intergenic | 35.0% | |
| TGTGCAAGCAAACTGAAATT+AGG | - | chr1_3:60057103-60057122 | None:intergenic | 35.0% | |
| ! | GAAAGTGGAAGTTGGTTTAT+GGG | - | chr1_3:60057232-60057251 | None:intergenic | 35.0% |
| TTTGTAAGGAAAGTGGAAGT+TGG | - | chr1_3:60057240-60057259 | None:intergenic | 35.0% | |
| GAGCAAATTTGTAAGGAAAG+TGG | - | chr1_3:60057247-60057266 | None:intergenic | 35.0% | |
| GTCACTTGAGCAAATTTGTA+AGG | - | chr1_3:60057254-60057273 | None:intergenic | 35.0% | |
| !! | TTTGACTTGCCTTACAGAAA+AGG | + | chr1_3:60057550-60057569 | Msa0129980:intron | 35.0% |
| TATATCTCAATGGAGCTGAA+TGG | - | chr1_3:60057682-60057701 | None:intergenic | 35.0% | |
| GATATTCTCCAAGAGATTGA+AGG | + | chr1_3:60057850-60057869 | Msa0129980:CDS | 35.0% | |
| ATCTTCTTCCTTCAATCTCT+TGG | - | chr1_3:60057861-60057880 | None:intergenic | 35.0% | |
| AATATGCAAAGGAGAGAAGA+TGG | + | chr1_3:60057912-60057931 | Msa0129980:CDS | 35.0% | |
| AGATCTAGCAATGAGATCAA+TGG | - | chr1_3:60057942-60057961 | None:intergenic | 35.0% | |
| AGACTTCTTCAACAACTGAT+GGG | - | chr1_3:60058044-60058063 | None:intergenic | 35.0% | |
| !!! | AAGAAGTCTGATTTTGACTG+TGG | + | chr1_3:60058055-60058074 | Msa0129980:CDS | 35.0% |
| CTAACACAACGAACCTCATA+GGG | - | chr1_3:60055501-60055520 | None:intergenic | 40.0% | |
| TCTAACACAACGAACCTCAT+AGG | - | chr1_3:60055502-60055521 | None:intergenic | 40.0% | |
| ATGAGGTTCGTTGTGTTAGA+AGG | + | chr1_3:60055502-60055521 | Msa0129980:CDS | 40.0% | |
| CAACCTTTGACAAGTACCTA+AGG | - | chr1_3:60055572-60055591 | None:intergenic | 40.0% | |
| AAGATACTCCATCTTGCTGA+TGG | + | chr1_3:60055618-60055637 | Msa0129980:CDS | 40.0% | |
| TGGAACAACCATCAAAACCA+AGG | + | chr1_3:60055638-60055657 | Msa0129980:CDS | 40.0% | |
| TGGTGGCAAAAATTGATCGT+GGG | + | chr1_3:60055833-60055852 | Msa0129980:intron | 40.0% | |
| GTGGATGCTTGCAATTCAAA+AGG | + | chr1_3:60056204-60056223 | Msa0129980:intron | 40.0% | |
| !! | CATTGGTTCCAACTCATGAT+TGG | - | chr1_3:60056338-60056357 | None:intergenic | 40.0% |
| AGCTCTTCCATGTAATGAGA+AGG | + | chr1_3:60056393-60056412 | Msa0129980:CDS | 40.0% | |
| GCTCTTCCATGTAATGAGAA+GGG | + | chr1_3:60056394-60056413 | Msa0129980:CDS | 40.0% | |
| !! | GTAATGAGAAGGGTGTTTAC+TGG | + | chr1_3:60056404-60056423 | Msa0129980:CDS | 40.0% |
| !! | ATTGGAGAAAGCATTCACCT+TGG | - | chr1_3:60056453-60056472 | None:intergenic | 40.0% |
| ! | GTGAGAGGAATGATAGTGAA+AGG | + | chr1_3:60056545-60056564 | Msa0129980:intron | 40.0% |
| ATTGGAGTCTCACATTGTCA+AGG | - | chr1_3:60056634-60056653 | None:intergenic | 40.0% | |
| CAGACACATAGAATCCATGT+TGG | - | chr1_3:60056671-60056690 | None:intergenic | 40.0% | |
| ! | TGTCTAGGTTTCTGGATTGT+AGG | - | chr1_3:60056745-60056764 | None:intergenic | 40.0% |
| AATAGTCACACTCACGTATG+TGG | + | chr1_3:60056788-60056807 | Msa0129980:intron | 40.0% | |
| GTAAATTATAGCGCAGCAGT+TGG | - | chr1_3:60057134-60057153 | None:intergenic | 40.0% | |
| ! | GGAAAGTGGAAGTTGGTTTA+TGG | - | chr1_3:60057233-60057252 | None:intergenic | 40.0% |
| TTGCTTGTATTCAAGAAGGG+AGG | + | chr1_3:60057461-60057480 | Msa0129980:intron | 40.0% | |
| ! | GTAGTAGCTCCTTTTCTGTA+AGG | - | chr1_3:60057562-60057581 | None:intergenic | 40.0% |
| AAATCCATGGGAGCTCATAA+TGG | + | chr1_3:60057703-60057722 | Msa0129980:CDS | 40.0% | |
| AATCCATGGGAGCTCATAAT+GGG | + | chr1_3:60057704-60057723 | Msa0129980:CDS | 40.0% | |
| ! | TGGTGATGCTTTACACTCTA+TGG | + | chr1_3:60057757-60057776 | Msa0129980:CDS | 40.0% |
| !! | GGTGTTCTGCTTTAGAAGAT+GGG | + | chr1_3:60057801-60057820 | Msa0129980:CDS | 40.0% |
| !! | GTGTTCTGCTTTAGAAGATG+GGG | + | chr1_3:60057802-60057821 | Msa0129980:CDS | 40.0% |
| TCAGCAAGGTGGTTCAAAAT+TGG | + | chr1_3:60057979-60057998 | Msa0129980:CDS | 40.0% | |
| CAGACTTCTTCAACAACTGA+TGG | - | chr1_3:60058045-60058064 | None:intergenic | 40.0% | |
| ACTTGGAAGCTCACTAGCAA+GGG | - | chr1_3:60055544-60055563 | None:intergenic | 45.0% | |
| CACCCTTAGGTACTTGTCAA+AGG | + | chr1_3:60055566-60055585 | Msa0129980:CDS | 45.0% | |
| TGGTTGTTCCATCAGCAAGA+TGG | - | chr1_3:60055629-60055648 | None:intergenic | 45.0% | |
| !! | CTAAATGCGTGTCGACTATG+TGG | + | chr1_3:60055813-60055832 | Msa0129980:intron | 45.0% |
| GTGGTGGCAAAAATTGATCG+TGG | + | chr1_3:60055832-60055851 | Msa0129980:intron | 45.0% | |
| !! | AAGGTATTGATCGGGTGTGA+TGG | + | chr1_3:60056223-60056242 | Msa0129980:intron | 45.0% |
| ! | GTGTGATGGAGTTAACTCTG+TGG | + | chr1_3:60056237-60056256 | Msa0129980:CDS | 45.0% |
| TGATGGAGTTAACTCTGTGG+TGG | + | chr1_3:60056240-60056259 | Msa0129980:CDS | 45.0% | |
| TTAACTCTGTGGTGGCAAAG+TGG | + | chr1_3:60056248-60056267 | Msa0129980:CDS | 45.0% | |
| TGCATATCTCCCTGTGTAAG+AGG | - | chr1_3:60056290-60056309 | None:intergenic | 45.0% | |
| GTGCAAGACCAATCATGAGT+TGG | + | chr1_3:60056327-60056346 | Msa0129980:CDS | 45.0% | |
| !! | AAGCATTCACCTTGGCTTGT+AGG | - | chr1_3:60056445-60056464 | None:intergenic | 45.0% |
| CTCACATTGTCAAGGTTCTC+AGG | - | chr1_3:60056626-60056645 | None:intergenic | 45.0% | |
| TTGGGCATGAAGCTAGGTAT+TGG | - | chr1_3:60056652-60056671 | None:intergenic | 45.0% | |
| GGTAGGACACCCTCAAATTT+AGG | - | chr1_3:60056710-60056729 | None:intergenic | 45.0% | |
| AACTTGTGAGAGTGAGATCC+AGG | - | chr1_3:60056875-60056894 | None:intergenic | 45.0% | |
| GTTGGTTACGGTGGTTTCAT+AGG | - | chr1_3:60057060-60057079 | None:intergenic | 45.0% | |
| ! | GAAGATGAAGTTGGTTACGG+TGG | - | chr1_3:60057069-60057088 | None:intergenic | 45.0% |
| TTTCCCATTATGAGCTCCCA+TGG | - | chr1_3:60057710-60057729 | None:intergenic | 45.0% | |
| !! | GGGTGTTCTGCTTTAGAAGA+TGG | + | chr1_3:60057800-60057819 | Msa0129980:CDS | 45.0% |
| !! | TTCTGCTTTAGAAGATGGGG+TGG | + | chr1_3:60057805-60057824 | Msa0129980:CDS | 45.0% |
| !!! | AAGATGGGGTGGTTTTAGCA+AGG | + | chr1_3:60057816-60057835 | Msa0129980:CDS | 45.0% |
| ATTGTGGGCTCTATTCAGCA+AGG | + | chr1_3:60057965-60057984 | Msa0129980:CDS | 45.0% | |
| !!! | AAATATATAATTCATTTTAT+GGG | - | chr1_3:60057533-60057552 | None:intergenic | 5.0% |
| CACTTGGAAGCTCACTAGCA+AGG | - | chr1_3:60055545-60055564 | None:intergenic | 50.0% | |
| CTTGCTAGTGAGCTTCCAAG+TGG | + | chr1_3:60055543-60055562 | Msa0129980:CDS | 50.0% | |
| !! | AAGTACCTAAGGGTGCCACT+TGG | - | chr1_3:60055561-60055580 | None:intergenic | 50.0% |
| !! | AATGCGTGTCGACTATGTGG+TGG | + | chr1_3:60055816-60055835 | Msa0129980:intron | 50.0% |
| AAAGTGGCTAGGCTTCAAGG+AGG | + | chr1_3:60056264-60056283 | Msa0129980:CDS | 50.0% | |
| TTCAAGGAGGCCTCTTACAC+AGG | + | chr1_3:60056277-60056296 | Msa0129980:CDS | 50.0% | |
| TCAAGGAGGCCTCTTACACA+GGG | + | chr1_3:60056278-60056297 | Msa0129980:CDS | 50.0% | |
| ACATGGACTCCTACAAGCCA+AGG | + | chr1_3:60056433-60056452 | Msa0129980:CDS | 50.0% | |
| ACCTAGCTTCATGCCCAACA+TGG | + | chr1_3:60056654-60056673 | Msa0129980:intron | 50.0% | |
| TCCATGTTGGGCATGAAGCT+AGG | - | chr1_3:60056658-60056677 | None:intergenic | 50.0% | |
| TAAAGCAGAACACCCCCCTT+GGG | - | chr1_3:60057795-60057814 | None:intergenic | 50.0% | |
| GTCATGCAGTGGACCCTATG+AGG | + | chr1_3:60055485-60055504 | Msa0129980:CDS | 55.0% | |
| AGCTTCCAAGTGGCACCCTT+AGG | + | chr1_3:60055553-60055572 | Msa0129980:CDS | 55.0% | |
| TCTGTGGTGGCAAAGTGGCT+AGG | + | chr1_3:60056253-60056272 | Msa0129980:CDS | 55.0% | |
| GGCAAAGTGGCTAGGCTTCA+AGG | + | chr1_3:60056261-60056280 | Msa0129980:CDS | 55.0% | |
| ACACAGGGAGATATGCAGCC+AGG | + | chr1_3:60056293-60056312 | Msa0129980:CDS | 55.0% | |
| CACAGGGAGATATGCAGCCA+GGG | + | chr1_3:60056294-60056313 | Msa0129980:CDS | 55.0% | |
| ACAGGGAGATATGCAGCCAG+GGG | + | chr1_3:60056295-60056314 | Msa0129980:CDS | 55.0% | |
| CTTGCACTCTGAATAGCCCC+TGG | - | chr1_3:60056314-60056333 | None:intergenic | 55.0% | |
| ATGGCACCTGATCTTGCCCA+AGG | + | chr1_3:60057776-60057795 | Msa0129980:CDS | 55.0% | |
| TGGCACCTGATCTTGCCCAA+GGG | + | chr1_3:60057777-60057796 | Msa0129980:CDS | 55.0% | |
| CTAAAGCAGAACACCCCCCT+TGG | - | chr1_3:60057796-60057815 | None:intergenic | 55.0% | |
| GTGGGCTCTATTCAGCAAGG+TGG | + | chr1_3:60057968-60057987 | Msa0129980:CDS | 55.0% | |
| GGCACCTGATCTTGCCCAAG+GGG | + | chr1_3:60057778-60057797 | Msa0129980:CDS | 60.0% | |
| GCACCTGATCTTGCCCAAGG+GGG | + | chr1_3:60057779-60057798 | Msa0129980:CDS | 60.0% | |
| CACCTGATCTTGCCCAAGGG+GGG | + | chr1_3:60057780-60057799 | Msa0129980:CDS | 60.0% | |
| CACCCCCCTTGGGCAAGATC+AGG | - | chr1_3:60057785-60057804 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 60055483 | 60058299 | 60055483 | ID=Msa0129980;Name=Msa0129980 |
| chr1_3 | mRNA | 60055483 | 60058299 | 60055483 | ID=Msa0129980-mRNA-1;Parent=Msa0129980;Name=Msa0129980-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.33|1|1|1|3|203|311 |
| chr1_3 | exon | 60055483 | 60055659 | 60055483 | ID=Msa0129980-mRNA-1:exon:19673;Parent=Msa0129980-mRNA-1 |
| chr1_3 | exon | 60056226 | 60056454 | 60056226 | ID=Msa0129980-mRNA-1:exon:19674;Parent=Msa0129980-mRNA-1 |
| chr1_3 | exon | 60057567 | 60058299 | 60057567 | ID=Msa0129980-mRNA-1:exon:19675;Parent=Msa0129980-mRNA-1 |
| chr1_3 | CDS | 60055483 | 60055659 | 60055483 | ID=Msa0129980-mRNA-1:cds;Parent=Msa0129980-mRNA-1 |
| chr1_3 | CDS | 60056226 | 60056454 | 60056226 | ID=Msa0129980-mRNA-1:cds;Parent=Msa0129980-mRNA-1 |
| chr1_3 | CDS | 60057567 | 60058096 | 60057567 | ID=Msa0129980-mRNA-1:cds;Parent=Msa0129980-mRNA-1 |
| chr1_3 | three_prime_UTR | 60058097 | 60058299 | 60058097 | ID=Msa0129980-mRNA-1:three_prime_utr;Parent=Msa0129980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
