AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0904590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0904590 MtrunA17_Chr6g0452711 97.067 375 11 0 3 377 634 1008 0.0 751
Msa0904590 MtrunA17_Chr7g0216471 83.777 376 60 1 3 377 646 1021 0.0 623
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0904590 AT5G15070.7 76.684 386 75 4 3 377 398 779 0.0 600
Msa0904590 AT5G15070.6 76.684 386 75 4 3 377 398 779 0.0 600
Msa0904590 AT5G15070.1 76.684 386 75 4 3 377 639 1020 0.0 599
Msa0904590 AT5G15070.4 76.684 386 75 4 3 377 639 1020 0.0 599
Msa0904590 AT5G15070.5 76.684 386 75 4 3 377 645 1026 0.0 598
Msa0904590 AT5G15070.2 74.747 396 75 5 3 377 639 1030 0.0 590
Msa0904590 AT3G01310.1 76.064 376 82 3 3 377 649 1017 0.0 563
Msa0904590 AT3G01310.3 76.064 376 82 3 3 377 614 982 0.0 563
Msa0904590 AT3G01310.2 76.064 376 82 3 3 377 643 1011 0.0 562
Msa0904590 AT5G15070.3 78.618 304 59 3 3 304 639 938 2.95e-166 490

Find 88 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCATAAACATCAGGAATT+TGG 0.127705 6_2:-2370758 None:intergenic
CTTTGGATCTAAACGATATT+TGG 0.183101 6_2:-2373617 None:intergenic
AAACGAGCTTAAGGCTCTTT+TGG 0.229544 6_2:+2375769 Msa0904590:three_prime_UTR
TTCGTATTTCATCATTCTTA+TGG 0.238932 6_2:-2373537 None:intergenic
GGAGCACACACTGCCTATTA+TGG 0.249856 6_2:+2375476 Msa0904590:CDS
TGTTCTTCGATATTGCAATT+TGG 0.275233 6_2:+2374316 Msa0904590:CDS
TCAGATAGCTCGTCGGTTAT+TGG 0.277985 6_2:+2373384 Msa0904590:intron
AAAGAGCCTTAAGCTCGTTT+TGG 0.323711 6_2:-2375766 None:intergenic
TCGTATTTCATCATTCTTAT+GGG 0.328148 6_2:-2373536 None:intergenic
TTTAAAATCACAGGTGGCTT+TGG 0.329779 6_2:+2375011 Msa0904590:intron
CAGATAGCTCGTCGGTTATT+GGG 0.339659 6_2:+2373385 Msa0904590:intron
CCTACTTCTTGCAGCCTCTC+TGG 0.354881 6_2:-2375501 None:intergenic
ATCATAAACATCAGGAATTT+GGG 0.361182 6_2:-2370757 None:intergenic
GGATTAATTCCATATTCATT+TGG 0.365971 6_2:-2371864 None:intergenic
TGAAAGCCATTGATTTGATT+AGG 0.377642 6_2:+2375980 Msa0904590:three_prime_UTR
TGGCTTTGGAAGATCCTAAA+AGG 0.386701 6_2:+2375025 Msa0904590:CDS
ACTTTATTACTAATTACTAA+TGG 0.387922 6_2:-2375859 None:intergenic
TTATTATTTGTCTTATTGTT+CGG 0.389199 6_2:+2375930 Msa0904590:three_prime_UTR
AATAAAAGAATTGCAAAGAA+TGG 0.389549 6_2:-2375893 None:intergenic
AGCCTCTCTGGACCCATAAT+AGG 0.395923 6_2:-2375489 None:intergenic
TTGAGCGTCTGGTAAATCTT+TGG 0.405667 6_2:+2375639 Msa0904590:exon
TTCCTACCTAATCAAATCAA+TGG 0.405832 6_2:-2375986 None:intergenic
ATATCTCACATTAGAAACTA+TGG 0.418085 6_2:+2375527 Msa0904590:CDS
GAAAATCCTGCAGGTGTTGC+TGG 0.419344 6_2:-2375593 None:intergenic
AATGCACATCTTAATCTTGA+AGG 0.435268 6_2:+2371563 Msa0904590:CDS
GAGCACACACTGCCTATTAT+GGG 0.435358 6_2:+2375477 Msa0904590:CDS
GGTGTGATTCCAAATGAATA+TGG 0.442327 6_2:+2371855 Msa0904590:CDS
GATCATCCAAAACGAGCTTA+AGG 0.443853 6_2:+2375760 Msa0904590:three_prime_UTR
CTAGCGGAAAATAGTAAACT+TGG 0.451715 6_2:+2375676 Msa0904590:three_prime_UTR
TGAGGCAACATGGTTGCATC+AGG 0.455430 6_2:+2375455 Msa0904590:CDS
ATAAAAGAATTGCAAAGAAT+GGG 0.457730 6_2:-2375892 None:intergenic
TAAATCGGCACCACGGCTGC+AGG 0.469067 6_2:-2375064 None:intergenic
AATTTGGATGAATCTCTTCA+AGG 0.472365 6_2:+2374332 Msa0904590:CDS
GAGTGAAACATCAATGGATC+AGG 0.479352 6_2:+2373573 Msa0904590:CDS
CGTGTTCGCACATGGCGGTC+AGG 0.482109 6_2:-2373729 None:intergenic
TTGCATGAATCATAAACATC+AGG 0.485164 6_2:-2370765 None:intergenic
ATAGTCGATCTAAAGCATTA+TGG 0.486566 6_2:-2374373 None:intergenic
GCTCCTCTTCATCCTTTGCA+AGG 0.489165 6_2:-2370002 None:intergenic
ACATGAGCTACATTGTGCTT+AGG 0.492668 6_2:+2374417 Msa0904590:CDS
GGCTGCAGGTAAGCTCTATA+CGG 0.498660 6_2:-2375050 None:intergenic
GAAGAACATTCATGAGAGAA+TGG 0.499888 6_2:-2374301 None:intergenic
CACTCACTGATGTGAAGTAT+AGG 0.501838 6_2:-2373752 None:intergenic
TTCTATTGATGTATGCCCGC+TGG 0.502243 6_2:+2370145 Msa0904590:CDS
GTCTTCTGCAGGCATGGCAA+AGG 0.503076 6_2:-2375564 None:intergenic
CACTATGAGTGAAACATCAA+TGG 0.503309 6_2:+2373567 Msa0904590:CDS
GCTGGTGGAAAGTCTTCTGC+AGG 0.512926 6_2:-2375575 None:intergenic
ATCAATATTTGTCTTACCAA+GGG 0.516050 6_2:-2370079 None:intergenic
ATTATCCACGAACAATGAAA+AGG 0.516627 6_2:+2373486 Msa0904590:CDS
CCAGAGAGGCTGCAAGAAGT+AGG 0.520396 6_2:+2375501 Msa0904590:CDS
TTCCGCTAGTGTTTATGGAA+CGG 0.521846 6_2:-2375662 None:intergenic
AGTATATATGATTACCTCCA+AGG 0.522599 6_2:-2375091 None:intergenic
TTTCCACCAGCAACACCTGC+AGG 0.531530 6_2:+2375587 Msa0904590:CDS
TGGAAAGTCTTCTGCAGGCA+TGG 0.538145 6_2:-2375570 None:intergenic
CTAGGTAAAGCTGACTAAGA+AGG 0.539676 6_2:+2369960 Msa0904590:intron
GATGTTGACCGTATAGCTGC+TGG 0.545919 6_2:+2370099 Msa0904590:CDS
AAGGTAATCCAGCAGCTATA+CGG 0.548742 6_2:-2370107 None:intergenic
TGGATTACCTTGTGGTAGTG+AGG 0.549961 6_2:+2370119 Msa0904590:CDS
TCTTCTGCAGGCATGGCAAA+GGG 0.551468 6_2:-2375563 None:intergenic
CAAGAAGATCAAACAGAAGG+AGG 0.558818 6_2:-2375709 None:intergenic
ACATCTTAATCTTGAAGGAC+TGG 0.562710 6_2:+2371568 Msa0904590:CDS
CATCAATATTTGTCTTACCA+AGG 0.566081 6_2:-2370080 None:intergenic
AATCCTTGCAAAGGATGAAG+AGG 0.568181 6_2:+2369999 Msa0904590:CDS
GGATTACCTTGTGGTAGTGA+GGG 0.578814 6_2:+2370120 Msa0904590:CDS
AGTATAGGCGTGTTCGCACA+TGG 0.583944 6_2:-2373737 None:intergenic
TATGACCAAGCAAAAGCCCT+TGG 0.584663 6_2:+2370063 Msa0904590:CDS
GTATATATGATTACCTCCAA+GGG 0.589767 6_2:-2375090 None:intergenic
ACAAGTTAAAATCCTTGCAA+AGG 0.589789 6_2:+2369990 Msa0904590:CDS
AAATAACCAGAAAATCCTGC+AGG 0.597925 6_2:-2375602 None:intergenic
AGACAAGAAGATCAAACAGA+AGG 0.599735 6_2:-2375712 None:intergenic
GGACTTATATAATGAACGCA+AGG 0.604353 6_2:+2370182 Msa0904590:CDS
TTGGAATCACACCATCAGCA+AGG 0.605101 6_2:-2371845 None:intergenic
TATTTGCAGGCCCTTGCTGA+TGG 0.608925 6_2:+2371834 Msa0904590:intron
ATAGAGCTTACCTGCAGCCG+TGG 0.610801 6_2:+2375054 Msa0904590:CDS
AGAAAGATAGTGAGGCAACA+TGG 0.612625 6_2:+2375445 Msa0904590:CDS
TGGAATCACACCATCAGCAA+GGG 0.614487 6_2:-2371844 None:intergenic
GGCCGTTCCATAAACACTAG+CGG 0.623494 6_2:+2375660 Msa0904590:three_prime_UTR
AATCCTGCAGGTGTTGCTGG+TGG 0.627879 6_2:-2375590 None:intergenic
TTTCAATTCAGATAGCTCGT+CGG 0.638986 6_2:+2373377 Msa0904590:intron
AGATCGACTATGTCAAACAA+AGG 0.649931 6_2:+2374385 Msa0904590:CDS
ATAGCTGCTGGATTACCTTG+TGG 0.650961 6_2:+2370111 Msa0904590:CDS
TGATGTGAGGAACACTCGAG+AGG 0.662888 6_2:+2373420 Msa0904590:CDS
CAATGAAAAGGAAGATACAG+AGG 0.677625 6_2:+2373498 Msa0904590:CDS
TTGGCAGAAGAAAGATAGTG+AGG 0.684198 6_2:+2375437 Msa0904590:intron
TAGGATGTTTGAGAATACAG+AGG 0.698094 6_2:+2374436 Msa0904590:CDS
TATATATGATTACCTCCAAG+GGG 0.708426 6_2:-2375089 None:intergenic
TGCCTATTATGGGTCCAGAG+AGG 0.715967 6_2:+2375487 Msa0904590:CDS
AGAAATCCCTCACTACCACA+AGG 0.717319 6_2:-2370126 None:intergenic
ATATATGATTACCTCCAAGG+GGG 0.776034 6_2:-2375088 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCTTTAGTAAAAAAAAA+AGG + chr6_2:2371215-2371234 Msa0904590:intron 10.0%
!!! ATAGAAATAATACTTTTATA+AGG + chr6_2:2372082-2372101 Msa0904590:intron 10.0%
!!! ATATATACTTATATGTATTT+TGG + chr6_2:2375105-2375124 Msa0904590:intron 10.0%
!! TAAATAAAAGATTACCAATT+AGG - chr6_2:2369920-2369939 None:intergenic 15.0%
!!! CATATATTTTCTTAATTCTT+AGG + chr6_2:2370409-2370428 Msa0904590:intron 15.0%
!!! TAATACTTTTATAAGGAAAT+AGG + chr6_2:2372089-2372108 Msa0904590:intron 15.0%
!! TCAATAATAGATTTGTAATA+AGG + chr6_2:2372302-2372321 Msa0904590:intron 15.0%
!! AAAAAGGAATATAAAACTTA+TGG - chr6_2:2372879-2372898 None:intergenic 15.0%
!! AAATAATCACATTATGAAAT+AGG + chr6_2:2373212-2373231 Msa0904590:intron 15.0%
!! AACTTTATCATATCAATAAA+TGG - chr6_2:2375355-2375374 None:intergenic 15.0%
!! ACTTTATTACTAATTACTAA+TGG - chr6_2:2375862-2375881 None:intergenic 15.0%
!!! TTATTATTTGTCTTATTGTT+CGG + chr6_2:2375930-2375949 Msa0904590:three_prime_UTR 15.0%
!! CAAAACAAGTAAAAGAAAAA+TGG - chr6_2:2370237-2370256 None:intergenic 20.0%
!! TATATTCACATTGTTAGAAT+TGG + chr6_2:2370269-2370288 Msa0904590:intron 20.0%
!!! TTTTTCCTTCTTCATATTAA+TGG - chr6_2:2370299-2370318 None:intergenic 20.0%
!!! ATTTTATCAGTAGTTTAACA+TGG - chr6_2:2370535-2370554 None:intergenic 20.0%
!! TTGTATCTAAACAAAATGTT+TGG - chr6_2:2371126-2371145 None:intergenic 20.0%
!! TTGTTTAGATACAAGATAAT+AGG + chr6_2:2371132-2371151 Msa0904590:intron 20.0%
!! TTTAGACATCTGTTATTATA+AGG - chr6_2:2371278-2371297 None:intergenic 20.0%
!!! TTTTGAGTTTGAAGAAATAT+TGG + chr6_2:2371455-2371474 Msa0904590:intron 20.0%
!! AAATTTAAACGCATATCAAA+GGG - chr6_2:2371706-2371725 None:intergenic 20.0%
!! AAAATTTAAACGCATATCAA+AGG - chr6_2:2371707-2371726 None:intergenic 20.0%
!! TGAATATTTGTATAGTTTAG+TGG - chr6_2:2372166-2372185 None:intergenic 20.0%
!!! TTTTATCAATAGGAACATTT+TGG - chr6_2:2372208-2372227 None:intergenic 20.0%
!!! AAAGAAGTAGTTTTATCAAT+AGG - chr6_2:2372218-2372237 None:intergenic 20.0%
!! AAAAGGAATTATATACAGAA+AGG - chr6_2:2372405-2372424 None:intergenic 20.0%
!! TAATAAAACCATATCAATGA+AGG + chr6_2:2372484-2372503 Msa0904590:intron 20.0%
!!! CTTTTAGAATCTGATTATTT+CGG + chr6_2:2372824-2372843 Msa0904590:intron 20.0%
!! GTGATTTATACAACATAAAA+AGG - chr6_2:2372895-2372914 None:intergenic 20.0%
!! GGATATTAATCTTATAATCA+AGG - chr6_2:2373122-2373141 None:intergenic 20.0%
!! ATCAATCCAATATTCAATTA+GGG - chr6_2:2373155-2373174 None:intergenic 20.0%
!!! AATAAAGACCAATTTTTAGA+AGG - chr6_2:2373267-2373286 None:intergenic 20.0%
!!! TACCTATTTATTTAAAGCTA+TGG + chr6_2:2373329-2373348 Msa0904590:intron 20.0%
!! ACAATAAAAACAAATTAAGC+AGG - chr6_2:2373358-2373377 None:intergenic 20.0%
!! ACTTGAGTATTAAGAAAAAT+TGG + chr6_2:2373916-2373935 Msa0904590:intron 20.0%
!! TTCGTTTGATTAAATGTATT+TGG + chr6_2:2374092-2374111 Msa0904590:intron 20.0%
!! TCGTTTGATTAAATGTATTT+GGG + chr6_2:2374093-2374112 Msa0904590:intron 20.0%
!!! TGATTTTAACTAGTTGAATA+AGG + chr6_2:2374153-2374172 Msa0904590:intron 20.0%
!! AATTCCATAAAAAGTTCATT+AGG + chr6_2:2375197-2375216 Msa0904590:intron 20.0%
!! ATAAAAGAATTGCAAAGAAT+GGG - chr6_2:2375895-2375914 None:intergenic 20.0%
!! AATAAAAGAATTGCAAAGAA+TGG - chr6_2:2375896-2375915 None:intergenic 20.0%
!! AGATTACCAATTAGGTATTT+TGG - chr6_2:2369912-2369931 None:intergenic 25.0%
! ATCAATATTTGTCTTACCAA+GGG - chr6_2:2370082-2370101 None:intergenic 25.0%
! AAGGAGTAAGCATTATTATT+TGG + chr6_2:2370201-2370220 Msa0904590:intron 25.0%
! AGTTAAAACTCATTACATAC+TGG + chr6_2:2370366-2370385 Msa0904590:intron 25.0%
! TACATGTTTGTATGCATAAT+TGG + chr6_2:2370684-2370703 Msa0904590:intron 25.0%
! ATCATAAACATCAGGAATTT+GGG - chr6_2:2370760-2370779 None:intergenic 25.0%
! AATCATAAACATCAGGAATT+TGG - chr6_2:2370761-2370780 None:intergenic 25.0%
!! TTTTCGTCGTTGTTAATTTA+TGG + chr6_2:2370938-2370957 Msa0904590:intron 25.0%
! TTTCGTCGTTGTTAATTTAT+GGG + chr6_2:2370939-2370958 Msa0904590:intron 25.0%
!!! CAGATGTCTAAATTTTAACT+TGG + chr6_2:2371286-2371305 Msa0904590:intron 25.0%
! TTATAAGACAGATACTAACA+AGG + chr6_2:2371668-2371687 Msa0904590:intron 25.0%
!!! CGTTTAAATTTTACTTGTTG+AGG + chr6_2:2371715-2371734 Msa0904590:intron 25.0%
!!! CATAGTTGATAAATATACAG+AGG - chr6_2:2371766-2371785 None:intergenic 25.0%
! CTCTGTATATTTATCAACTA+TGG + chr6_2:2371764-2371783 Msa0904590:intron 25.0%
! TGTATATTTATCAACTATGG+CGG + chr6_2:2371767-2371786 Msa0904590:intron 25.0%
! AATATATTGGTAGAGTTATC+AGG - chr6_2:2371818-2371837 None:intergenic 25.0%
! GGATTAATTCCATATTCATT+TGG - chr6_2:2371867-2371886 None:intergenic 25.0%
! TGCAATGTTAAATGACATTT+GGG - chr6_2:2371942-2371961 None:intergenic 25.0%
! TTGCAATGTTAAATGACATT+TGG - chr6_2:2371943-2371962 None:intergenic 25.0%
! GACTGTTAGGATATATAATA+GGG - chr6_2:2372284-2372303 None:intergenic 25.0%
! TGACTGTTAGGATATATAAT+AGG - chr6_2:2372285-2372304 None:intergenic 25.0%
!! CAAATCTATTATTGACTGTT+AGG - chr6_2:2372297-2372316 None:intergenic 25.0%
! ACCTATTACTATAGACTTTA+GGG - chr6_2:2372361-2372380 None:intergenic 25.0%
! AACCTATTACTATAGACTTT+AGG - chr6_2:2372362-2372381 None:intergenic 25.0%
! AAGGAATTATAAGATAGAAG+AGG - chr6_2:2372386-2372405 None:intergenic 25.0%
! TTTATTAACTTCCTTGACTT+GGG - chr6_2:2372471-2372490 None:intergenic 25.0%
!! TTTTATTAACTTCCTTGACT+TGG - chr6_2:2372472-2372491 None:intergenic 25.0%
!!! ATTTTTTTTGTCTTTCCGAA+GGG + chr6_2:2372513-2372532 Msa0904590:intron 25.0%
!! ATCAGATTCTAAAAGTCTTT+GGG - chr6_2:2372819-2372838 None:intergenic 25.0%
!! AATCAGATTCTAAAAGTCTT+TGG - chr6_2:2372820-2372839 None:intergenic 25.0%
! AAGCAATGATTTATATGTCA+AGG + chr6_2:2372985-2373004 Msa0904590:intron 25.0%
! TTAATCTTATAATCAAGGTG+TGG - chr6_2:2373117-2373136 None:intergenic 25.0%
! TCAATCCAATATTCAATTAG+GGG - chr6_2:2373154-2373173 None:intergenic 25.0%
! CATCAATCCAATATTCAATT+AGG - chr6_2:2373156-2373175 None:intergenic 25.0%
! TTACTTCTCTTTGCATTTAA+AGG - chr6_2:2373191-2373210 None:intergenic 25.0%
! GTATTCTTAAAATGTATGCT+AGG + chr6_2:2373234-2373253 Msa0904590:intron 25.0%
!! GTTAAAGACCTTCTAAAAAT+TGG + chr6_2:2373256-2373275 Msa0904590:intron 25.0%
! ATAAAAACAAATTAAGCAGG+TGG - chr6_2:2373355-2373374 None:intergenic 25.0%
!!! GAAAACTTTTAATTGATGTG+AGG + chr6_2:2373407-2373426 Msa0904590:CDS 25.0%
! TCGTATTTCATCATTCTTAT+GGG - chr6_2:2373539-2373558 None:intergenic 25.0%
! TTCGTATTTCATCATTCTTA+TGG - chr6_2:2373540-2373559 None:intergenic 25.0%
!!! CTGTGTTATAATTTTTTGTG+AGG + chr6_2:2373780-2373799 Msa0904590:intron 25.0%
! GATACAAATATTTCCAGTTT+AGG + chr6_2:2373858-2373877 Msa0904590:intron 25.0%
! TATTTCATTCATTCCTAAAC+TGG - chr6_2:2373874-2373893 None:intergenic 25.0%
! TTCTTAATACTCAAGTCATT+AGG - chr6_2:2373912-2373931 None:intergenic 25.0%
! AATCAAACGAATACTAACTA+CGG - chr6_2:2374083-2374102 None:intergenic 25.0%
! TTATAGATAAATGTGTACTC+GGG - chr6_2:2374185-2374204 None:intergenic 25.0%
! CTTATAGATAAATGTGTACT+CGG - chr6_2:2374186-2374205 None:intergenic 25.0%
!! TCTCTGCTAATTTTATTGAT+AGG + chr6_2:2374268-2374287 Msa0904590:intron 25.0%
! GTTTACCAAATTACGATATA+TGG + chr6_2:2374576-2374595 Msa0904590:intron 25.0%
!! CGTGTAATATGTTCTTTTAT+AGG + chr6_2:2374853-2374872 Msa0904590:intron 25.0%
! GAGACTATCATATCAATAAA+TGG - chr6_2:2375244-2375263 None:intergenic 25.0%
! TCAATAAATGGTATTCGAAT+AGG - chr6_2:2375343-2375362 None:intergenic 25.0%
! CTAATATATGCTGTGTTATA+TGG + chr6_2:2375414-2375433 Msa0904590:intron 25.0%
! ATATCTCACATTAGAAACTA+TGG + chr6_2:2375527-2375546 Msa0904590:CDS 25.0%
!!! TTGTTTCCAACAGTATTTTT+TGG - chr6_2:2375829-2375848 None:intergenic 25.0%
!!! TACCAATTAGGTATTTTGGT+AGG - chr6_2:2369908-2369927 None:intergenic 30.0%
ACAAGTTAAAATCCTTGCAA+AGG + chr6_2:2369990-2370009 Msa0904590:CDS 30.0%
CATCAATATTTGTCTTACCA+AGG - chr6_2:2370083-2370102 None:intergenic 30.0%
GAATGCCATTAATATGAAGA+AGG + chr6_2:2370291-2370310 Msa0904590:intron 30.0%
AAAACTCATTACATACTGGT+AGG + chr6_2:2370370-2370389 Msa0904590:intron 30.0%
! TTTCAAATCACATTTTCCCA+TGG + chr6_2:2370623-2370642 Msa0904590:intron 30.0%
! TTCAAATCACATTTTCCCAT+GGG + chr6_2:2370624-2370643 Msa0904590:intron 30.0%
ATACAAACATGTAACCAGTA+AGG - chr6_2:2370677-2370696 None:intergenic 30.0%
TTGCATGAATCATAAACATC+AGG - chr6_2:2370768-2370787 None:intergenic 30.0%
ATAAGCAACAAAAGACTGTT+GGG - chr6_2:2371000-2371019 None:intergenic 30.0%
AACAATGTACAAGAAATGTG+AGG - chr6_2:2371064-2371083 None:intergenic 30.0%
TTCTTGTACATTGTTTGCAT+TGG + chr6_2:2371069-2371088 Msa0904590:intron 30.0%
TCTTGTACATTGTTTGCATT+GGG + chr6_2:2371070-2371089 Msa0904590:intron 30.0%
ATACAAGATAATAGGCATCA+AGG + chr6_2:2371140-2371159 Msa0904590:intron 30.0%
TGAGTTTGAAGAAATATTGG+AGG + chr6_2:2371458-2371477 Msa0904590:intron 30.0%
AATGCACATCTTAATCTTGA+AGG + chr6_2:2371563-2371582 Msa0904590:CDS 30.0%
! AGGTACATAAGAAACGTTTT+AGG + chr6_2:2371612-2371631 Msa0904590:intron 30.0%
! GGTACATAAGAAACGTTTTA+GGG + chr6_2:2371613-2371632 Msa0904590:intron 30.0%
AACTCTACCAATATATTTGC+AGG + chr6_2:2371821-2371840 Msa0904590:intron 30.0%
!!! CCAATTTTTAGTTTCTGCTT+TGG - chr6_2:2371888-2371907 None:intergenic 30.0%
CCAAAGCAGAAACTAAAAAT+TGG + chr6_2:2371885-2371904 Msa0904590:CDS 30.0%
! GAAACTAAAAATTGGCTCAA+AGG + chr6_2:2371893-2371912 Msa0904590:CDS 30.0%
GCAATGTTAAATGACATTTG+GGG - chr6_2:2371941-2371960 None:intergenic 30.0%
TTTATACCTCCAATCATTGA+AGG + chr6_2:2371978-2371997 Msa0904590:intron 30.0%
AAGATTTGACTGTCAACATT+AGG + chr6_2:2372040-2372059 Msa0904590:intron 30.0%
TTAGGAACCAAGAAATTGAA+CGG + chr6_2:2372058-2372077 Msa0904590:intron 30.0%
TTCTATTCCGTTCAATTTCT+TGG - chr6_2:2372068-2372087 None:intergenic 30.0%
AGAGATTTCTCTATTGTGAA+GGG - chr6_2:2372141-2372160 None:intergenic 30.0%
TAGAGATTTCTCTATTGTGA+AGG - chr6_2:2372142-2372161 None:intergenic 30.0%
! TATCAATAGGAACATTTTGG+AGG - chr6_2:2372205-2372224 None:intergenic 30.0%
TGTTAAAGCACACTGAAAAA+AGG - chr6_2:2372422-2372441 None:intergenic 30.0%
!!! GATTTTTTTTGTCTTTCCGA+AGG + chr6_2:2372512-2372531 Msa0904590:intron 30.0%
AATGTTGAGTTTACAAGGAT+TGG + chr6_2:2372571-2372590 Msa0904590:intron 30.0%
!!! CATTTGTTTTTAGCAATACG+AGG + chr6_2:2372853-2372872 Msa0904590:intron 30.0%
TGTCAAGGATATATAAGCAA+AGG + chr6_2:2373000-2373019 Msa0904590:intron 30.0%
CAAAATTTGAACCTTTACTG+AGG - chr6_2:2373063-2373082 None:intergenic 30.0%
GATTTCCCCTAATTGAATAT+TGG + chr6_2:2373146-2373165 Msa0904590:intron 30.0%
TTCTCTTTGCATTTAAAGGA+TGG - chr6_2:2373187-2373206 None:intergenic 30.0%
!! GGCCATAGCTTTAAATAAAT+AGG - chr6_2:2373334-2373353 None:intergenic 30.0%
! TCGTGGATAATGAATTTTCT+TGG - chr6_2:2373477-2373496 None:intergenic 30.0%
ATTATCCACGAACAATGAAA+AGG + chr6_2:2373486-2373505 Msa0904590:CDS 30.0%
!!! CTTATGGGAATTTTTTGACT+TGG - chr6_2:2373524-2373543 None:intergenic 30.0%
CTTTGGATCTAAACGATATT+TGG - chr6_2:2373620-2373639 None:intergenic 30.0%
TTAGATCCAAAGTGAATATC+AGG + chr6_2:2373628-2373647 Msa0904590:intron 30.0%
AGATAACCTGATATTCACTT+TGG - chr6_2:2373637-2373656 None:intergenic 30.0%
TAATCTATTTATTCTCCACC+AGG + chr6_2:2373688-2373707 Msa0904590:intron 30.0%
CATTGGTGTAATTTCACTTA+AGG + chr6_2:2373952-2373971 Msa0904590:intron 30.0%
!!! TCATTTTTTTTTTGCGCACA+AGG - chr6_2:2373986-2374005 None:intergenic 30.0%
CTTAATTTCAGAAGAAAGAC+AGG - chr6_2:2374017-2374036 None:intergenic 30.0%
ATCAAACGAATACTAACTAC+GGG - chr6_2:2374082-2374101 None:intergenic 30.0%
TATAGATAAATGTGTACTCG+GGG - chr6_2:2374184-2374203 None:intergenic 30.0%
CGAGTACACATTTATCTATA+AGG + chr6_2:2374184-2374203 Msa0904590:intron 30.0%
TGTTCTTCGATATTGCAATT+TGG + chr6_2:2374316-2374335 Msa0904590:CDS 30.0%
AATTTGGATGAATCTCTTCA+AGG + chr6_2:2374332-2374351 Msa0904590:CDS 30.0%
! ATAGTCGATCTAAAGCATTA+TGG - chr6_2:2374376-2374395 None:intergenic 30.0%
!! ATTTGCTATGACTACAAATG+AGG - chr6_2:2374539-2374558 None:intergenic 30.0%
TTTGGTAAACTTCACTTGTT+AGG - chr6_2:2374566-2374585 None:intergenic 30.0%
ATATGCATAACTTTGCATCT+AGG - chr6_2:2374631-2374650 None:intergenic 30.0%
TAGATGCAAAGTTATGCATA+TGG + chr6_2:2374630-2374649 Msa0904590:intron 30.0%
TAAATGTGTATAACGAGAAC+AGG + chr6_2:2374730-2374749 Msa0904590:intron 30.0%
! ACAGGTTCTTTTCTAATGAT+TGG + chr6_2:2374748-2374767 Msa0904590:intron 30.0%
!!! AATATTTTGACAGTCAGAAC+AGG + chr6_2:2374819-2374838 Msa0904590:intron 30.0%
!! TTGTCTGACTTTAAAATCAC+AGG + chr6_2:2375002-2375021 Msa0904590:intron 30.0%
TATATATGATTACCTCCAAG+GGG - chr6_2:2375092-2375111 None:intergenic 30.0%
GTATATATGATTACCTCCAA+GGG - chr6_2:2375093-2375112 None:intergenic 30.0%
AGTATATATGATTACCTCCA+AGG - chr6_2:2375094-2375113 None:intergenic 30.0%
!!! TATTTTGGCTAAAAGCGTAA+AGG + chr6_2:2375120-2375139 Msa0904590:intron 30.0%
!!! ATTTTGGCTAAAAGCGTAAA+GGG + chr6_2:2375121-2375140 Msa0904590:intron 30.0%
TCATTCACCATTACTATATC+TGG + chr6_2:2375156-2375175 Msa0904590:intron 30.0%
TAACATGCCAGATATAGTAA+TGG - chr6_2:2375166-2375185 None:intergenic 30.0%
! TGAGCCTAATGAACTTTTTA+TGG - chr6_2:2375204-2375223 None:intergenic 30.0%
TATATGCTGTGTTATATGGT+TGG + chr6_2:2375418-2375437 Msa0904590:intron 30.0%
!! TCTTGTCTCATTTTAATGCA+AGG + chr6_2:2375727-2375746 Msa0904590:three_prime_UTR 30.0%
!!! CAACAGTATTTTTTGGTTGT+TGG - chr6_2:2375822-2375841 None:intergenic 30.0%
CAACAACCAAAAAATACTGT+TGG + chr6_2:2375820-2375839 Msa0904590:three_prime_UTR 30.0%
AGCCTACCAAAATACCTAAT+TGG + chr6_2:2369903-2369922 Msa0904590:intron 35.0%
GGACTTATATAATGAACGCA+AGG + chr6_2:2370182-2370201 Msa0904590:CDS 35.0%
TGAGTTCAAGAAATTCCCAT+GGG - chr6_2:2370642-2370661 None:intergenic 35.0%
ATGAGTTCAAGAAATTCCCA+TGG - chr6_2:2370643-2370662 None:intergenic 35.0%
TGACATTATGTTTCTTGTGC+AGG + chr6_2:2370721-2370740 Msa0904590:intron 35.0%
ACCAGAACTTAGTCATTGTA+TGG + chr6_2:2370894-2370913 Msa0904590:intron 35.0%
ACCATACAATGACTAAGTTC+TGG - chr6_2:2370898-2370917 None:intergenic 35.0%
AGAACTTAGTCATTGTATGG+TGG + chr6_2:2370897-2370916 Msa0904590:intron 35.0%
CATAAGCAACAAAAGACTGT+TGG - chr6_2:2371001-2371020 None:intergenic 35.0%
AATGTACAAGAAATGTGAGG+TGG - chr6_2:2371061-2371080 None:intergenic 35.0%
! AACTCTTGTGTTTTATGTGC+CGG + chr6_2:2371387-2371406 Msa0904590:intron 35.0%
! CATACCTGATATTGATGATC+CGG - chr6_2:2371409-2371428 None:intergenic 35.0%
ACATCTTAATCTTGAAGGAC+TGG + chr6_2:2371568-2371587 Msa0904590:CDS 35.0%
GGTGTGATTCCAAATGAATA+TGG + chr6_2:2371855-2371874 Msa0904590:CDS 35.0%
AATTCTATGATCTGAACCCA+TGG - chr6_2:2372004-2372023 None:intergenic 35.0%
CAAATCTTGCATTAGCATGA+TGG - chr6_2:2372028-2372047 None:intergenic 35.0%
GAGATTTCTCTATTGTGAAG+GGG - chr6_2:2372140-2372159 None:intergenic 35.0%
!! GAACATTTTGGAGGTAGAAA+GGG - chr6_2:2372196-2372215 None:intergenic 35.0%
GCCCTAAAGTCTATAGTAAT+AGG + chr6_2:2372357-2372376 Msa0904590:intron 35.0%
ATCATGTGCCTTCATTGATA+TGG - chr6_2:2372495-2372514 None:intergenic 35.0%
CCTTGTAAACTCAACATTCA+TGG - chr6_2:2372569-2372588 None:intergenic 35.0%
CCATGAATGTTGAGTTTACA+AGG + chr6_2:2372566-2372585 Msa0904590:intron 35.0%
!!! ATTGGTTTTGCCATCCAAAA+AGG + chr6_2:2372589-2372608 Msa0904590:intron 35.0%
GGAAATTACACATGAATGGA+AGG - chr6_2:2372643-2372662 None:intergenic 35.0%
ACACGGAAATTACACATGAA+TGG - chr6_2:2372647-2372666 None:intergenic 35.0%
GAATCTGATTATTTCGGTTC+TGG + chr6_2:2372830-2372849 Msa0904590:intron 35.0%
TCAGATAAATGCCTCAGTAA+AGG + chr6_2:2373049-2373068 Msa0904590:intron 35.0%
TTCAATTAGGGGAAATCACT+GGG - chr6_2:2373143-2373162 None:intergenic 35.0%
ATTCAATTAGGGGAAATCAC+TGG - chr6_2:2373144-2373163 None:intergenic 35.0%
TTTCAATTCAGATAGCTCGT+CGG + chr6_2:2373377-2373396 Msa0904590:intron 35.0%
! ATCTTCCTTTTCATTGTTCG+TGG - chr6_2:2373494-2373513 None:intergenic 35.0%
CAATGAAAAGGAAGATACAG+AGG + chr6_2:2373498-2373517 Msa0904590:CDS 35.0%
CACTATGAGTGAAACATCAA+TGG + chr6_2:2373567-2373586 Msa0904590:CDS 35.0%
ACTTAAAATCACTCACAGGA+GGG - chr6_2:2373827-2373846 None:intergenic 35.0%
TACTTAAAATCACTCACAGG+AGG - chr6_2:2373828-2373847 None:intergenic 35.0%
!! TCCTGTGAGTGATTTTAAGT+AGG + chr6_2:2373827-2373846 Msa0904590:intron 35.0%
!! CCTGTGAGTGATTTTAAGTA+GGG + chr6_2:2373828-2373847 Msa0904590:intron 35.0%
TACTCAAGTCATTAGGTGAT+AGG - chr6_2:2373905-2373924 None:intergenic 35.0%
AAGTGAAATTACACCAATGC+AGG - chr6_2:2373951-2373970 None:intergenic 35.0%
TCAAACGAATACTAACTACG+GGG - chr6_2:2374081-2374100 None:intergenic 35.0%
GAAGAACATTCATGAGAGAA+TGG - chr6_2:2374304-2374323 None:intergenic 35.0%
AGATCGACTATGTCAAACAA+AGG + chr6_2:2374385-2374404 Msa0904590:CDS 35.0%
TAGGATGTTTGAGAATACAG+AGG + chr6_2:2374436-2374455 Msa0904590:CDS 35.0%
!!! AATACAGAGGTGTGTCATTT+TGG + chr6_2:2374449-2374468 Msa0904590:intron 35.0%
TTCCTTACTGTATTCCTAAG+TGG + chr6_2:2374479-2374498 Msa0904590:intron 35.0%
CCATGCCATATATCGTAATT+TGG - chr6_2:2374584-2374603 None:intergenic 35.0%
CCAAATTACGATATATGGCA+TGG + chr6_2:2374581-2374600 Msa0904590:intron 35.0%
AACTGTCATAAAACATCTCG+AGG - chr6_2:2374608-2374627 None:intergenic 35.0%
TCGTTATACACATTTAACCC+TGG - chr6_2:2374726-2374745 None:intergenic 35.0%
GACTGTCAAAATATTGTCAC+AGG - chr6_2:2374814-2374833 None:intergenic 35.0%
ACTCAGGAGATTTAACAAAG+TGG - chr6_2:2374909-2374928 None:intergenic 35.0%
TCATAAGCAGACAACTTAGT+TGG - chr6_2:2374945-2374964 None:intergenic 35.0%
!! TCTGACTTTAAAATCACAGG+TGG + chr6_2:2375005-2375024 Msa0904590:intron 35.0%
! TTTAAAATCACAGGTGGCTT+TGG + chr6_2:2375011-2375030 Msa0904590:intron 35.0%
ATATATGATTACCTCCAAGG+GGG - chr6_2:2375091-2375110 None:intergenic 35.0%
AAATAACCAGAAAATCCTGC+AGG - chr6_2:2375605-2375624 None:intergenic 35.0%
! CTATTTTCCGCTAGTGTTTA+TGG - chr6_2:2375670-2375689 None:intergenic 35.0%
CTAGCGGAAAATAGTAAACT+TGG + chr6_2:2375676-2375695 Msa0904590:three_prime_UTR 35.0%
AGACAAGAAGATCAAACAGA+AGG - chr6_2:2375715-2375734 None:intergenic 35.0%
!! GGCTCTTTTGGAAATTCTTT+TGG + chr6_2:2375781-2375800 Msa0904590:three_prime_UTR 35.0%
! TCTCAATTTTGCCTTTGCCT+AGG + chr6_2:2369942-2369961 Msa0904590:intron 40.0%
CTTCTTAGTCAGCTTTACCT+AGG - chr6_2:2369962-2369981 None:intergenic 40.0%
CTAGGTAAAGCTGACTAAGA+AGG + chr6_2:2369960-2369979 Msa0904590:intron 40.0%
AATCCTTGCAAAGGATGAAG+AGG + chr6_2:2369999-2370018 Msa0904590:CDS 40.0%
AAGGTAATCCAGCAGCTATA+CGG - chr6_2:2370110-2370129 None:intergenic 40.0%
TGGTACAAACATACTCGACA+TGG - chr6_2:2370515-2370534 None:intergenic 40.0%
AACATGTAACCAGTAAGGCA+CGG - chr6_2:2370672-2370691 None:intergenic 40.0%
AAATGTGAGGTGGACAGTAA+AGG - chr6_2:2371051-2371070 None:intergenic 40.0%
ATTTAGCTGAACAACGCTCT+TGG - chr6_2:2371099-2371118 None:intergenic 40.0%
!! AGGTGAGTTTGCTATTGCTA+TGG - chr6_2:2371258-2371277 None:intergenic 40.0%
GTGAAACTGACTGTTAGTTG+AGG + chr6_2:2371324-2371343 Msa0904590:intron 40.0%
! TGAGCTTTTCAAAGTTGCTC+AGG + chr6_2:2371592-2371611 Msa0904590:CDS 40.0%
! TTTGGGGATTTTCATCCAAC+AGG - chr6_2:2371925-2371944 None:intergenic 40.0%
GAGAGAAATCTCTCCTTCAA+GGG + chr6_2:2372111-2372130 Msa0904590:intron 40.0%
!! GGAACATTTTGGAGGTAGAA+AGG - chr6_2:2372197-2372216 None:intergenic 40.0%
TCATAGAGAGCTTCAGGAAA+GGG - chr6_2:2372332-2372351 None:intergenic 40.0%
ATCATAGAGAGCTTCAGGAA+AGG - chr6_2:2372333-2372352 None:intergenic 40.0%
CTATGATCATAGAGAGCTTC+AGG - chr6_2:2372338-2372357 None:intergenic 40.0%
ATAGCAATGTCATGTCTCCT+AGG + chr6_2:2372542-2372561 Msa0904590:intron 40.0%
AACTCAACATTCATGGACCT+AGG - chr6_2:2372562-2372581 None:intergenic 40.0%
ACACATGAATGGAAGGCAAA+CGG - chr6_2:2372636-2372655 None:intergenic 40.0%
GAGTGAAACATCAATGGATC+AGG + chr6_2:2373573-2373592 Msa0904590:CDS 40.0%
TGTCTTCACATTTGCATACC+TGG - chr6_2:2373709-2373728 None:intergenic 40.0%
CACTCACTGATGTGAAGTAT+AGG - chr6_2:2373755-2373774 None:intergenic 40.0%
TTAAAATCACTCACAGGAGG+GGG - chr6_2:2373825-2373844 None:intergenic 40.0%
CTTAAAATCACTCACAGGAG+GGG - chr6_2:2373826-2373845 None:intergenic 40.0%
CCCTACTTAAAATCACTCAC+AGG - chr6_2:2373831-2373850 None:intergenic 40.0%
ACATGAGCTACATTGTGCTT+AGG + chr6_2:2374417-2374436 Msa0904590:CDS 40.0%
CACCACTTAGGAATACAGTA+AGG - chr6_2:2374484-2374503 None:intergenic 40.0%
CTTACTGTATTCCTAAGTGG+TGG + chr6_2:2374482-2374501 Msa0904590:intron 40.0%
TCATATAACGTCCACCACTT+AGG - chr6_2:2374496-2374515 None:intergenic 40.0%
!! AGTGGTGGACGTTATATGAA+TGG + chr6_2:2374497-2374516 Msa0904590:intron 40.0%
TTGTCACAGGTGATACTGAA+AGG - chr6_2:2374801-2374820 None:intergenic 40.0%
!! CAACTTAGTTGGTAAGCTGA+GGG - chr6_2:2374934-2374953 None:intergenic 40.0%
!! ACAACTTAGTTGGTAAGCTG+AGG - chr6_2:2374935-2374954 None:intergenic 40.0%
!! TGGCTTTGGAAGATCCTAAA+AGG + chr6_2:2375025-2375044 Msa0904590:CDS 40.0%
! AGCTCTATACGGTACCTTTT+AGG - chr6_2:2375042-2375061 None:intergenic 40.0%
TTGGCAGAAGAAAGATAGTG+AGG + chr6_2:2375437-2375456 Msa0904590:intron 40.0%
AGAAAGATAGTGAGGCAACA+TGG + chr6_2:2375445-2375464 Msa0904590:CDS 40.0%
TTGAGCGTCTGGTAAATCTT+TGG + chr6_2:2375639-2375658 Msa0904590:exon 40.0%
TTCCGCTAGTGTTTATGGAA+CGG - chr6_2:2375665-2375684 None:intergenic 40.0%
CAAGAAGATCAAACAGAAGG+AGG - chr6_2:2375712-2375731 None:intergenic 40.0%
GATCATCCAAAACGAGCTTA+AGG + chr6_2:2375760-2375779 Msa0904590:three_prime_UTR 40.0%
! AAAGAGCCTTAAGCTCGTTT+TGG - chr6_2:2375769-2375788 None:intergenic 40.0%
! AAACGAGCTTAAGGCTCTTT+TGG + chr6_2:2375769-2375788 Msa0904590:three_prime_UTR 40.0%
AGTCAGCTTTACCTAGGCAA+AGG - chr6_2:2369956-2369975 None:intergenic 45.0%
! GCTTTTGCTTGGTCATAAGG+AGG - chr6_2:2370060-2370079 None:intergenic 45.0%
! AGGGCTTTTGCTTGGTCATA+AGG - chr6_2:2370063-2370082 None:intergenic 45.0%
TATGACCAAGCAAAAGCCCT+TGG + chr6_2:2370063-2370082 Msa0904590:CDS 45.0%
! TCTTACCAAGGGCTTTTGCT+TGG - chr6_2:2370071-2370090 None:intergenic 45.0%
ATAGCTGCTGGATTACCTTG+TGG + chr6_2:2370111-2370130 Msa0904590:CDS 45.0%
! TGGATTACCTTGTGGTAGTG+AGG + chr6_2:2370119-2370138 Msa0904590:CDS 45.0%
! GGATTACCTTGTGGTAGTGA+GGG + chr6_2:2370120-2370139 Msa0904590:CDS 45.0%
AGAAATCCCTCACTACCACA+AGG - chr6_2:2370129-2370148 None:intergenic 45.0%
TTCTATTGATGTATGCCCGC+TGG + chr6_2:2370145-2370164 Msa0904590:CDS 45.0%
!! CCTTTCAAGCTTTTTCCAGC+GGG - chr6_2:2370163-2370182 None:intergenic 45.0%
!! CCCTTTCAAGCTTTTTCCAG+CGG - chr6_2:2370164-2370183 None:intergenic 45.0%
CCGCTGGAAAAAGCTTGAAA+GGG + chr6_2:2370161-2370180 Msa0904590:CDS 45.0%
ACATGTAACCAGTAAGGCAC+GGG - chr6_2:2370671-2370690 None:intergenic 45.0%
TCAGTTGACAACAGCTCAAC+AGG - chr6_2:2371358-2371377 None:intergenic 45.0%
TGTGCCGGATCATCAATATC+AGG + chr6_2:2371402-2371421 Msa0904590:intron 45.0%
! ACTTGTTGAGGACTCCTTGA+TGG + chr6_2:2371727-2371746 Msa0904590:intron 45.0%
GAAAGCAGTCATCACCATCA+AGG - chr6_2:2371744-2371763 None:intergenic 45.0%
GCAAGGGCCTGCAAATATAT+TGG - chr6_2:2371831-2371850 None:intergenic 45.0%
TGGAATCACACCATCAGCAA+GGG - chr6_2:2371847-2371866 None:intergenic 45.0%
TTGGAATCACACCATCAGCA+AGG - chr6_2:2371848-2371867 None:intergenic 45.0%
GCTCAAAGGTAAACTCCTGT+TGG + chr6_2:2371907-2371926 Msa0904590:intron 45.0%
CTCCAATCATTGAAGGCCAT+GGG + chr6_2:2371985-2372004 Msa0904590:intron 45.0%
AACCCATGGCCTTCAATGAT+TGG - chr6_2:2371990-2372009 None:intergenic 45.0%
GGAGAGAAATCTCTCCTTCA+AGG + chr6_2:2372110-2372129 Msa0904590:intron 45.0%
CATTGCTATGCATGACCCTT+CGG - chr6_2:2372531-2372550 None:intergenic 45.0%
TGCCATCCAAAAAGGCTTAG+AGG + chr6_2:2372597-2372616 Msa0904590:intron 45.0%
! CACCTCTAAGCCTTTTTGGA+TGG - chr6_2:2372602-2372621 None:intergenic 45.0%
! GTTGCACCTCTAAGCCTTTT+TGG - chr6_2:2372606-2372625 None:intergenic 45.0%
CACATGAATGGAAGGCAAAC+GGG - chr6_2:2372635-2372654 None:intergenic 45.0%
TTTCCGTGTGTTTGTGTGTG+TGG + chr6_2:2372658-2372677 Msa0904590:intron 45.0%
TTCCGTGTGTTTGTGTGTGT+GGG + chr6_2:2372659-2372678 Msa0904590:intron 45.0%
! TCAGATAGCTCGTCGGTTAT+TGG + chr6_2:2373384-2373403 Msa0904590:intron 45.0%
! CAGATAGCTCGTCGGTTATT+GGG + chr6_2:2373385-2373404 Msa0904590:intron 45.0%
CTTCACATTTGCATACCTGG+TGG - chr6_2:2373706-2373725 None:intergenic 45.0%
! TTGGTGTTTGACACCTGCAT+TGG + chr6_2:2373935-2373954 Msa0904590:intron 45.0%
TGCAAATGAGCTGGATTCCA+GGG + chr6_2:2374706-2374725 Msa0904590:intron 45.0%
TACCTCCAAGGGGGATAAAT+CGG - chr6_2:2375082-2375101 None:intergenic 45.0%
AGACTCCTCGCTGATAAAGT+TGG - chr6_2:2375388-2375407 None:intergenic 45.0%
GAGCACACACTGCCTATTAT+GGG + chr6_2:2375477-2375496 Msa0904590:CDS 45.0%
! AAAAAGCATGCTTGAGCGTC+TGG + chr6_2:2375628-2375647 Msa0904590:CDS 45.0%
GCTCCTCTTCATCCTTTGCA+AGG - chr6_2:2370005-2370024 None:intergenic 50.0%
GATGTTGACCGTATAGCTGC+TGG + chr6_2:2370099-2370118 Msa0904590:CDS 50.0%
CCCGCTGGAAAAAGCTTGAA+AGG + chr6_2:2370160-2370179 Msa0904590:CDS 50.0%
CATGAATTCCCGTGCCTTAC+TGG + chr6_2:2370660-2370679 Msa0904590:intron 50.0%
TATTTGCAGGCCCTTGCTGA+TGG + chr6_2:2371834-2371853 Msa0904590:intron 50.0%
CCATGGCCTTCAATGATTGG+AGG - chr6_2:2371987-2372006 None:intergenic 50.0%
CCTCCAATCATTGAAGGCCA+TGG + chr6_2:2371984-2372003 Msa0904590:intron 50.0%
TGTGAAGGGGAAACCCTTGA+AGG - chr6_2:2372127-2372146 None:intergenic 50.0%
CACCCACACACACAAACACA+CGG - chr6_2:2372664-2372683 None:intergenic 50.0%
TGTTTGTGTGTGTGGGTGTG+TGG + chr6_2:2372666-2372685 Msa0904590:intron 50.0%
GTTTGTGTGTGTGGGTGTGT+GGG + chr6_2:2372667-2372686 Msa0904590:intron 50.0%
TGATGTGAGGAACACTCGAG+AGG + chr6_2:2373420-2373439 Msa0904590:CDS 50.0%
AGTATAGGCGTGTTCGCACA+TGG - chr6_2:2373740-2373759 None:intergenic 50.0%
CAAGCTCAGTGCAAATGAGC+TGG + chr6_2:2374697-2374716 Msa0904590:intron 50.0%
GTGCAAATGAGCTGGATTCC+AGG + chr6_2:2374705-2374724 Msa0904590:intron 50.0%
GGCTGCAGGTAAGCTCTATA+CGG - chr6_2:2375053-2375072 None:intergenic 50.0%
TGCCTCCAACTTTATCAGCG+AGG + chr6_2:2375380-2375399 Msa0904590:intron 50.0%
CTCCTCGCTGATAAAGTTGG+AGG - chr6_2:2375385-2375404 None:intergenic 50.0%
TGAGGCAACATGGTTGCATC+AGG + chr6_2:2375455-2375474 Msa0904590:CDS 50.0%
GGAGCACACACTGCCTATTA+TGG + chr6_2:2375476-2375495 Msa0904590:CDS 50.0%
TGCCTATTATGGGTCCAGAG+AGG + chr6_2:2375487-2375506 Msa0904590:CDS 50.0%
AGCCTCTCTGGACCCATAAT+AGG - chr6_2:2375492-2375511 None:intergenic 50.0%
TCTTCTGCAGGCATGGCAAA+GGG - chr6_2:2375566-2375585 None:intergenic 50.0%
TGGAAAGTCTTCTGCAGGCA+TGG - chr6_2:2375573-2375592 None:intergenic 50.0%
! GAAAATCCTGCAGGTGTTGC+TGG - chr6_2:2375596-2375615 None:intergenic 50.0%
! GCAACACCTGCAGGATTTTC+TGG + chr6_2:2375596-2375615 Msa0904590:CDS 50.0%
GGCCGTTCCATAAACACTAG+CGG + chr6_2:2375660-2375679 Msa0904590:three_prime_UTR 50.0%
AGAACCAGCTGCCCAAGTCA+AGG + chr6_2:2372457-2372476 Msa0904590:intron 55.0%
!! ACTTCCTTGACTTGGGCAGC+TGG - chr6_2:2372464-2372483 None:intergenic 55.0%
ATAGGCGTGTTCGCACATGG+CGG - chr6_2:2373737-2373756 None:intergenic 55.0%
TGGTAAGCTGAGGGACACTC+AGG - chr6_2:2374925-2374944 None:intergenic 55.0%
ATAGAGCTTACCTGCAGCCG+TGG + chr6_2:2375054-2375073 Msa0904590:CDS 55.0%
AGGGGGATAAATCGGCACCA+CGG - chr6_2:2375074-2375093 None:intergenic 55.0%
!! TGGTGCCGATTTATCCCCCT+TGG + chr6_2:2375074-2375093 Msa0904590:CDS 55.0%
!! TGCCGATTTATCCCCCTTGG+AGG + chr6_2:2375077-2375096 Msa0904590:CDS 55.0%
CCTACTTCTTGCAGCCTCTC+TGG - chr6_2:2375504-2375523 None:intergenic 55.0%
CCAGAGAGGCTGCAAGAAGT+AGG + chr6_2:2375501-2375520 Msa0904590:CDS 55.0%
GTCTTCTGCAGGCATGGCAA+AGG - chr6_2:2375567-2375586 None:intergenic 55.0%
GCTGGTGGAAAGTCTTCTGC+AGG - chr6_2:2375578-2375597 None:intergenic 55.0%
TTTCCACCAGCAACACCTGC+AGG + chr6_2:2375587-2375606 Msa0904590:CDS 55.0%
!! AATCCTGCAGGTGTTGCTGG+TGG - chr6_2:2375593-2375612 None:intergenic 55.0%
GTGTGTGTGGGTGTGTGGGT+CGG + chr6_2:2372671-2372690 Msa0904590:intron 60.0%
TAAATCGGCACCACGGCTGC+AGG - chr6_2:2375067-2375086 None:intergenic 60.0%
CGTGTTCGCACATGGCGGTC+AGG - chr6_2:2373732-2373751 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 2369889 2375999 2369889 ID=Msa0904590;Name=Msa0904590
chr6_2 mRNA 2369889 2375999 2369889 ID=Msa0904590-mRNA-1;Parent=Msa0904590;Name=Msa0904590-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.88|0.8|0.9|1|1|10|346|397
chr6_2 exon 2369889 2369894 2369889 ID=Msa0904590-mRNA-1:exon:760;Parent=Msa0904590-mRNA-1
chr6_2 exon 2369964 2370205 2369964 ID=Msa0904590-mRNA-1:exon:761;Parent=Msa0904590-mRNA-1
chr6_2 exon 2370743 2370787 2370743 ID=Msa0904590-mRNA-1:exon:762;Parent=Msa0904590-mRNA-1
chr6_2 exon 2371547 2371613 2371547 ID=Msa0904590-mRNA-1:exon:763;Parent=Msa0904590-mRNA-1
chr6_2 exon 2371843 2371914 2371843 ID=Msa0904590-mRNA-1:exon:764;Parent=Msa0904590-mRNA-1
chr6_2 exon 2373388 2373638 2373388 ID=Msa0904590-mRNA-1:exon:765;Parent=Msa0904590-mRNA-1
chr6_2 exon 2373710 2373767 2373710 ID=Msa0904590-mRNA-1:exon:766;Parent=Msa0904590-mRNA-1
chr6_2 exon 2374290 2374457 2374290 ID=Msa0904590-mRNA-1:exon:767;Parent=Msa0904590-mRNA-1
chr6_2 exon 2375024 2375098 2375024 ID=Msa0904590-mRNA-1:exon:768;Parent=Msa0904590-mRNA-1
chr6_2 exon 2375444 2375999 2375444 ID=Msa0904590-mRNA-1:exon:769;Parent=Msa0904590-mRNA-1
chr6_2 CDS 2369889 2369894 2369889 ID=Msa0904590-mRNA-1:cds;Parent=Msa0904590-mRNA-1
chr6_2 CDS 2369964 2370205 2369964 ID=Msa0904590-mRNA-1:cds;Parent=Msa0904590-mRNA-1
chr6_2 CDS 2370743 2370787 2370743 ID=Msa0904590-mRNA-1:cds;Parent=Msa0904590-mRNA-1
chr6_2 CDS 2371547 2371613 2371547 ID=Msa0904590-mRNA-1:cds;Parent=Msa0904590-mRNA-1
chr6_2 CDS 2371843 2371914 2371843 ID=Msa0904590-mRNA-1:cds;Parent=Msa0904590-mRNA-1
chr6_2 CDS 2373388 2373638 2373388 ID=Msa0904590-mRNA-1:cds;Parent=Msa0904590-mRNA-1
chr6_2 CDS 2373710 2373767 2373710 ID=Msa0904590-mRNA-1:cds;Parent=Msa0904590-mRNA-1
chr6_2 CDS 2374290 2374457 2374290 ID=Msa0904590-mRNA-1:cds;Parent=Msa0904590-mRNA-1
chr6_2 CDS 2375024 2375098 2375024 ID=Msa0904590-mRNA-1:cds;Parent=Msa0904590-mRNA-1
chr6_2 CDS 2375444 2375653 2375444 ID=Msa0904590-mRNA-1:cds;Parent=Msa0904590-mRNA-1
chr6_2 three_prime_UTR 2375654 2375999 2375654 ID=Msa0904590-mRNA-1:three_prime_utr;Parent=Msa0904590-mRNA-1
Gene Sequence

>Msa0904590

ATGCAGGTAAAGCTGACTAAGAAGGTTACTGAACAAGTTAAAATCCTTGCAAAGGATGAAGAGGAGCAACTTACAGAAAGAAGCTTATATGATATCATTCCTCCTTATGACCAAGCAAAAGCCCTTGGTAAGACAAATATTGATGTTGACCGTATAGCTGCTGGATTACCTTGTGGTAGTGAGGGATTTCTATTGATGTATGCCCGCTGGAAAAAGCTTGAAAGGGACTTATATAATGAACGCAAGGAGCGCTATAAAATCACCCAAATTCCTGATGTTTATGATTCATGCAAATATGATCTCTTGCATAATGCACATCTTAATCTTGAAGGACTGGATGAGCTTTTCAAAGTTGCTCAGGCCCTTGCTGATGGTGTGATTCCAAATGAATATGGAATTAATCCAAAGCAGAAACTAAAAATTGGCTCAAAGATAGCTCGTCGGTTATTGGGAAAACTTTTAATTGATGTGAGGAACACTCGAGAGGAAGCAATTAGTGTCGCAGAGCTAAAGAATAACCAAGAAAATTCATTATCCACGAACAATGAAAAGGAAGATACAGAGGCCAAGTCAAAAAATTCCCATAAGAATGATGAAATACGAAAATGCAGCACTATGAGTGAAACATCAATGGATCAGGACGATGATGATGATAAAGAGACCAAATATCGTTTAGATCCAAAGTATGCAAATGTGAAGACACCTGACCGCCATGTGCGAACACGCCTATACTTCACATCAGAATCACATATCCATTCTCTCATGAATGTTCTTCGATATTGCAATTTGGATGAATCTCTTCAAGGAGAAGAGAGTCTTGTTTGCCATAATGCTTTAGATCGACTATGTCAAACAAAGGAGCTAGACTACATGAGCTACATTGTGCTTAGGATGTTTGAGAATACAGAGGTGGCTTTGGAAGATCCTAAAAGGTACCGTATAGAGCTTACCTGCAGCCGTGGTGCCGATTTATCCCCCTTGGAGAAGAAAGATAGTGAGGCAACATGGTTGCATCAGGAGCACACACTGCCTATTATGGGTCCAGAGAGGCTGCAAGAAGTAGGTTCATATCTCACATTAGAAACTATGGAGAAAATGATTCGCCCTTTGCCATGCCTGCAGAAGACTTTCCACCAGCAACACCTGCAGGATTTTCTGGTTATTTCACAAAAAGCATGCTTGAGCGTCTGGTAA

Protein sequence

>Msa0904590

MQVKLTKKVTEQVKILAKDEEEQLTERSLYDIIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWKKLERDLYNERKERYKITQIPDVYDSCKYDLLHNAHLNLEGLDELFKVAQALADGVIPNEYGINPKQKLKIGSKIARRLLGKLLIDVRNTREEAISVAELKNNQENSLSTNNEKEDTEAKSKNSHKNDEIRKCSTMSETSMDQDDDDDKETKYRLDPKYANVKTPDRHVRTRLYFTSESHIHSLMNVLRYCNLDESLQGEESLVCHNALDRLCQTKELDYMSYIVLRMFENTEVALEDPKRYRIELTCSRGADLSPLEKKDSEATWLHQEHTLPIMGPERLQEVGSYLTLETMEKMIRPLPCLQKTFHQQHLQDFLVISQKACLSVW*