Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048010 | sp|Q8GYX3|MP705_ARATH | 53.750 | 480 | 166 | 8 | 16 | 490 | 9 | 437 | 2.11e-145 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048010 | Msa0141420 | 0.991711 | 4.052335e-189 | -8.615850e-47 |
| Msa0048010 | Msa0197880 | 0.809432 | 1.897675e-50 | -8.615850e-47 |
| Msa0048010 | Msa0239650 | 0.997770 | 7.534629e-249 | -8.615850e-47 |
| Msa0048010 | Msa0277650 | 0.908124 | 2.406915e-81 | -8.615850e-47 |
| Msa0048010 | Msa0317240 | 0.905626 | 3.518941e-80 | -8.615850e-47 |
| Msa0048010 | Msa0527610 | 0.900559 | 6.487961e-78 | -8.615850e-47 |
| Msa0048010 | Msa1117910 | 0.816055 | 6.734737e-52 | -8.615850e-47 |
| Msa0048010 | Msa1447210 | 0.998597 | 5.609111e-270 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048010 | MtrunA17_Chr2g0290411 | 95.519 | 491 | 12 | 1 | 1 | 491 | 1 | 481 | 0.0 | 934 |
| Msa0048010 | MtrunA17_Chr4g0076251 | 65.070 | 501 | 142 | 4 | 6 | 491 | 19 | 501 | 0.0 | 593 |
| Msa0048010 | MtrunA17_Chr8g0391771 | 45.749 | 494 | 226 | 10 | 13 | 491 | 57 | 523 | 1.35e-125 | 379 |
| Msa0048010 | MtrunA17_Chr1g0161371 | 45.473 | 497 | 223 | 10 | 13 | 491 | 52 | 518 | 3.74e-124 | 375 |
| Msa0048010 | MtrunA17_Chr8g0344311 | 46.307 | 501 | 211 | 10 | 13 | 491 | 53 | 517 | 1.57e-122 | 371 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0048010 | AT4G17220.1 | 53.750 | 480 | 166 | 8 | 16 | 490 | 9 | 437 | 2.14e-146 | 429 |
| Msa0048010 | AT1G24764.1 | 45.749 | 494 | 226 | 8 | 13 | 490 | 74 | 541 | 5.74e-131 | 394 |
| Msa0048010 | AT1G24764.3 | 45.749 | 494 | 226 | 8 | 13 | 490 | 133 | 600 | 1.88e-129 | 392 |
| Msa0048010 | AT1G68060.1 | 46.761 | 494 | 220 | 11 | 13 | 491 | 66 | 531 | 2.41e-129 | 389 |
| Msa0048010 | AT1G14840.1 | 44.869 | 497 | 224 | 8 | 13 | 491 | 49 | 513 | 1.69e-126 | 381 |
| Msa0048010 | AT2G01750.1 | 44.785 | 489 | 233 | 6 | 13 | 490 | 73 | 535 | 1.23e-125 | 380 |
| Msa0048010 | AT2G01750.2 | 44.785 | 489 | 233 | 6 | 13 | 490 | 73 | 535 | 1.24e-125 | 380 |
| Msa0048010 | AT1G14840.2 | 42.455 | 497 | 221 | 9 | 13 | 491 | 49 | 498 | 1.50e-111 | 342 |
| Msa0048010 | AT1G24764.2 | 46.024 | 415 | 182 | 8 | 93 | 491 | 1 | 389 | 1.54e-108 | 331 |
Find 98 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCAGTTTCTTGACTTCT+AGG | 0.102098 | 1_1:-81273683 | None:intergenic |
| TTTCCTTTGGTCTTCTATTT+TGG | 0.106408 | 1_1:-81272480 | None:intergenic |
| TTTCCTTTGGTATCCAATTT+TGG | 0.142874 | 1_1:-81272375 | None:intergenic |
| CTTAGCTTCAGTTGCCCTTA+TGG | 0.199525 | 1_1:-81273354 | None:intergenic |
| ATTCTTTATGAAGAGAAAAT+TGG | 0.212662 | 1_1:+81275820 | Msa0048010:three_prime_UTR |
| GGTAGAACCATATTTCATTT+TGG | 0.221595 | 1_1:-81275050 | None:intergenic |
| TTCCAAAAGCCAAACATAAA+AGG | 0.248082 | 1_1:+81274983 | Msa0048010:CDS |
| ACACTTACCATCACCAAAAT+TGG | 0.257334 | 1_1:+81272362 | Msa0048010:five_prime_UTR |
| TCTTCTAACCATTGCCTAAC+AGG | 0.277147 | 1_1:-81274603 | None:intergenic |
| ATAGAAACTATACACGAAAA+TGG | 0.289286 | 1_1:-81274151 | None:intergenic |
| ATATTCGATTTATCAGCTTT+TGG | 0.300457 | 1_1:-81274878 | None:intergenic |
| AGCATAACCAAAATGAAATA+TGG | 0.322617 | 1_1:+81275043 | Msa0048010:CDS |
| TTTACCAAGAAAGAAGAAAA+TGG | 0.324121 | 1_1:+81272637 | Msa0048010:exon |
| CCTCAAGTTCATGAATTGTT+TGG | 0.350831 | 1_1:-81274286 | None:intergenic |
| TCTACAGATTACAGCACTTC+AGG | 0.391041 | 1_1:+81273953 | Msa0048010:intron |
| GAAAGCACTGATGTGGTCTC+TGG | 0.402489 | 1_1:+81275217 | Msa0048010:CDS |
| GTGATAAGGTCATGCCTGTT+AGG | 0.415652 | 1_1:+81274589 | Msa0048010:CDS |
| TCAGGAAGATAAGAAAGCTT+TGG | 0.418519 | 1_1:+81273971 | Msa0048010:CDS |
| ACAATGGTGGATTGAGAAAC+AGG | 0.418721 | 1_1:+81274918 | Msa0048010:CDS |
| AAAAGGCAACATAGACAGTA+TGG | 0.427289 | 1_1:+81275000 | Msa0048010:CDS |
| TAGCATACTCCATTTGTTGT+TGG | 0.431105 | 1_1:+81272419 | Msa0048010:five_prime_UTR |
| AGATCTCGATCCGTCTCTTC+AGG | 0.431500 | 1_1:-81274103 | None:intergenic |
| ATCTCCAACACAACAACATC+TGG | 0.433211 | 1_1:-81272689 | None:intergenic |
| AAAAGCAGAATCACAATTGA+AGG | 0.437230 | 1_1:+81274692 | Msa0048010:CDS |
| TATGGCTGGGAACCGAAAAC+CGG | 0.449172 | 1_1:+81275018 | Msa0048010:CDS |
| AAGATTACACACAGATCAAA+AGG | 0.452964 | 1_1:+81273758 | Msa0048010:CDS |
| GAGAAATGAAGTAAGTAAGA+TGG | 0.460243 | 1_1:+81273550 | Msa0048010:CDS |
| ATGGTGAAATCAAGGCCATA+AGG | 0.461955 | 1_1:+81273339 | Msa0048010:CDS |
| ACAGGAGGAGAACAAAATCT+TGG | 0.462576 | 1_1:+81274220 | Msa0048010:intron |
| AGAAGGCTTAAAGCAATTCT+CGG | 0.473398 | 1_1:+81274829 | Msa0048010:CDS |
| GAGGAGCTCATCTTATCAAA+TGG | 0.475247 | 1_1:+81274305 | Msa0048010:CDS |
| CGCAACAGTTGCAATTCTGT+TGG | 0.479391 | 1_1:-81274544 | None:intergenic |
| TTTAGAGTCTTCATCAGCAT+TGG | 0.483845 | 1_1:-81275173 | None:intergenic |
| TGGAGATACTGAAAATGCAT+TGG | 0.489587 | 1_1:-81274858 | None:intergenic |
| AAAACACCAACAACAAATGA+TGG | 0.495818 | 1_1:-81272320 | None:intergenic |
| TCTCAGACTCTGTAAGTTAG+TGG | 0.498944 | 1_1:-81275926 | None:intergenic |
| TCACAAAAGTAGAACACCTA+TGG | 0.501557 | 1_1:+81272565 | Msa0048010:five_prime_UTR |
| TAAAAGCCATCATTTGTTGT+TGG | 0.502135 | 1_1:+81272314 | Msa0048010:five_prime_UTR |
| GGCAACATAGACAGTATGGC+TGG | 0.502574 | 1_1:+81275004 | Msa0048010:CDS |
| TTTCCAACGGTAGATCCTCT+TGG | 0.502837 | 1_1:-81274953 | None:intergenic |
| CATTTGCAAAACAAACTCAT+AGG | 0.508565 | 1_1:+81272716 | Msa0048010:CDS |
| CAAACCAGATGTTGTTGTGT+TGG | 0.510088 | 1_1:+81272685 | Msa0048010:CDS |
| ATGGAAAGATGAAAGTGATA+AGG | 0.511209 | 1_1:+81274575 | Msa0048010:CDS |
| CTTTATGAAGAGAAAATTGG+AGG | 0.512076 | 1_1:+81275823 | Msa0048010:three_prime_UTR |
| CAACTGTTGCGGCTAATGAA+TGG | 0.512914 | 1_1:+81274556 | Msa0048010:CDS |
| CTTCTCTGTATGTACAGAGT+TGG | 0.523530 | 1_1:-81275950 | None:intergenic |
| TAAGTGTACTGTTGAGGCTA+AGG | 0.523957 | 1_1:-81272451 | None:intergenic |
| TACATGCCATGGTGAAATCA+AGG | 0.527571 | 1_1:+81273331 | Msa0048010:CDS |
| TGCGAGACTAAGACTTAAAG+AGG | 0.531452 | 1_1:+81273574 | Msa0048010:CDS |
| GGCGTGATGACACTTTCAAA+TGG | 0.532270 | 1_1:-81273795 | None:intergenic |
| AACATAAGAAGATATATGCC+TGG | 0.538469 | 1_1:-81274127 | None:intergenic |
| TAAAATTTCAGGAGGAGAAG+AGG | 0.539106 | 1_1:+81274484 | Msa0048010:intron |
| CCAAACAATTCATGAACTTG+AGG | 0.539948 | 1_1:+81274286 | Msa0048010:CDS |
| AACAAATGAAGTATGATCAC+TGG | 0.540299 | 1_1:-81272604 | None:intergenic |
| AAGCCACCGGCAAAAGATTG+TGG | 0.540851 | 1_1:+81274247 | Msa0048010:CDS |
| TATATATAGTATTATTCCAT+AGG | 0.547203 | 1_1:-81272581 | None:intergenic |
| AGAAGAAAGAAAGATTATGC+AGG | 0.548152 | 1_1:+81274620 | Msa0048010:CDS |
| CACTAGAGAGGGAATTAGCA+AGG | 0.557388 | 1_1:+81274508 | Msa0048010:CDS |
| CAACAGAATTGCAACTGTTG+CGG | 0.557551 | 1_1:+81274545 | Msa0048010:CDS |
| TTAAGTTTCGTAACGAACAA+TGG | 0.569896 | 1_1:+81274902 | Msa0048010:CDS |
| GAGACGGATCGAGATCTGCC+AGG | 0.577223 | 1_1:+81274109 | Msa0048010:CDS |
| TGGTGAAATCAAGGCCATAA+GGG | 0.577785 | 1_1:+81273340 | Msa0048010:CDS |
| ATCTTAATCTCGTCTTCAAG+AGG | 0.579230 | 1_1:-81273816 | None:intergenic |
| TGATGGAAAGTGCCCTATTG+AGG | 0.579242 | 1_1:-81272545 | None:intergenic |
| GAAAATGGTTGTCAATGAAG+AGG | 0.581609 | 1_1:+81272652 | Msa0048010:exon |
| AGACGAAAAGAAAGATGCGT+TGG | 0.582689 | 1_1:+81273704 | Msa0048010:CDS |
| AACTGAAGCTAAGAAAGATA+AGG | 0.586496 | 1_1:+81273364 | Msa0048010:CDS |
| GCTCACAAAGTCGAAAGAGT+TGG | 0.587191 | 1_1:+81273998 | Msa0048010:CDS |
| GAAAGATAAGGCCATAGAAG+AGG | 0.588351 | 1_1:+81273376 | Msa0048010:CDS |
| ACAACATCTGGTTTGACAAG+AGG | 0.589315 | 1_1:-81272677 | None:intergenic |
| TTATGCAGGCAGAGATGCAA+AGG | 0.590511 | 1_1:+81274634 | Msa0048010:CDS |
| AGGAGAAGAGGACACTAGAG+AGG | 0.591941 | 1_1:+81274496 | Msa0048010:CDS |
| CGCAGGATAAACTGAAGCTG+AGG | 0.593606 | 1_1:+81274792 | Msa0048010:intron |
| AAAACTTTGACCTGAAGAGA+CGG | 0.598972 | 1_1:+81274093 | Msa0048010:CDS |
| ATGGCTGGGAACCGAAAACC+GGG | 0.599697 | 1_1:+81275019 | Msa0048010:CDS |
| AGGTCATGCCTGTTAGGCAA+TGG | 0.612732 | 1_1:+81274595 | Msa0048010:CDS |
| TTATGGCCTTGATTTCACCA+TGG | 0.621711 | 1_1:-81273337 | None:intergenic |
| TCACCAAAATTGGATACCAA+AGG | 0.622755 | 1_1:+81272372 | Msa0048010:five_prime_UTR |
| TAACCAAAATAGAAGACCAA+AGG | 0.624121 | 1_1:+81272477 | Msa0048010:five_prime_UTR |
| AAGATAAGAAAGCTTTGGAA+CGG | 0.627349 | 1_1:+81273976 | Msa0048010:CDS |
| TGATTTAGAAAGCACTGATG+TGG | 0.627887 | 1_1:+81275210 | Msa0048010:CDS |
| AATGAACTTGCTACATGCCA+TGG | 0.628116 | 1_1:+81273320 | Msa0048010:CDS |
| AGTTTCGTAACGAACAATGG+TGG | 0.630214 | 1_1:+81274905 | Msa0048010:CDS |
| CAACCAAGAGGATCTACCGT+TGG | 0.630663 | 1_1:+81274950 | Msa0048010:CDS |
| ATAATCACGAATGAGATTAG+CGG | 0.637427 | 1_1:-81274333 | None:intergenic |
| AAATCTTGGAGAAAAGCCAC+CGG | 0.637665 | 1_1:+81274234 | Msa0048010:CDS |
| TTATGGTAAGTGTACTGTTG+AGG | 0.644306 | 1_1:-81272457 | None:intergenic |
| GCAACATAGACAGTATGGCT+GGG | 0.648667 | 1_1:+81275005 | Msa0048010:CDS |
| TGGCATTGCTTGAAGCAGAG+AGG | 0.652208 | 1_1:+81274018 | Msa0048010:CDS |
| TTGGAACAAAGTGTTTCCAA+CGG | 0.656799 | 1_1:-81274966 | None:intergenic |
| ATCACGAATGAGATTAGCGG+TGG | 0.659965 | 1_1:-81274330 | None:intergenic |
| GGAGAAGAGGACACTAGAGA+GGG | 0.660251 | 1_1:+81274497 | Msa0048010:CDS |
| AATGAGATACAGGTGAACAC+AGG | 0.676366 | 1_1:+81275139 | Msa0048010:CDS |
| TGATGGTAAGTGTACTGTTG+AGG | 0.679865 | 1_1:-81272352 | None:intergenic |
| ACTAGAGAGGGAATTAGCAA+GGG | 0.681716 | 1_1:+81274509 | Msa0048010:CDS |
| GATTAAGATGTATAGAACTG+AGG | 0.694125 | 1_1:+81273830 | Msa0048010:CDS |
| AGGTCTACATCACAACCAAG+AGG | 0.700161 | 1_1:+81274938 | Msa0048010:CDS |
| TGATTCTGCAGCATATTGTG+CGG | 0.724358 | 1_1:-81273727 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGGTATTTAAAAAAATAA+AGG | + | chr1_1:81272980-81272999 | Msa0048010:intron | 10.0% |
| !!! | TAATTTATTTTTTTCTATGT+AGG | + | chr1_1:81274715-81274734 | Msa0048010:intron | 10.0% |
| !!! | TATATAAAGTATTTTTCCTT+TGG | - | chr1_1:81272496-81272515 | None:intergenic | 15.0% |
| !! | TATATATAGTATTATTCCAT+AGG | - | chr1_1:81272584-81272603 | None:intergenic | 15.0% |
| !! | TTAAAAAAATCAATAGATCA+AGG | + | chr1_1:81273161-81273180 | Msa0048010:intron | 15.0% |
| !! | TAAAAAAATCAATAGATCAA+GGG | + | chr1_1:81273162-81273181 | Msa0048010:intron | 15.0% |
| !!! | CTATTTTTACTCCTTATTTT+TGG | + | chr1_1:81272860-81272879 | Msa0048010:intron | 20.0% |
| !!! | TTTCTTTTACACATTAACAA+TGG | - | chr1_1:81273025-81273044 | None:intergenic | 20.0% |
| !! | AACAAATAATGTTCTAACTT+TGG | - | chr1_1:81273456-81273475 | None:intergenic | 20.0% |
| !!! | CATAGAATTTATCATTGTTT+TGG | - | chr1_1:81273629-81273648 | None:intergenic | 20.0% |
| !! | TAAAAAAAGAAGTCAGATAA+CGG | - | chr1_1:81275438-81275457 | None:intergenic | 20.0% |
| !!! | TTTAGTTCTATGTAACAAAA+GGG | - | chr1_1:81275524-81275543 | None:intergenic | 20.0% |
| !! | ATTCTTTATGAAGAGAAAAT+TGG | + | chr1_1:81275820-81275839 | Msa0048010:three_prime_UTR | 20.0% |
| !! | ATACTATAGTGTTTTTCCTT+TGG | - | chr1_1:81272391-81272410 | None:intergenic | 25.0% |
| ! | ACAAAAATACCAACAACAAA+TGG | - | chr1_1:81272431-81272450 | None:intergenic | 25.0% |
| ! | TTTACCAAGAAAGAAGAAAA+TGG | + | chr1_1:81272637-81272656 | Msa0048010:exon | 25.0% |
| ! | ATTTGCTTCATCATTTGATT+AGG | + | chr1_1:81272769-81272788 | Msa0048010:intron | 25.0% |
| !!! | TGCACTTTTTTTTTATCGTA+AGG | + | chr1_1:81272919-81272938 | Msa0048010:intron | 25.0% |
| !! | TTAAATACCTTTTGTTACCT+TGG | - | chr1_1:81272972-81272991 | None:intergenic | 25.0% |
| ! | AACTAGTGACAATTTATTCA+TGG | + | chr1_1:81273104-81273123 | Msa0048010:intron | 25.0% |
| !! | ATCACAGTTTTCTTTGAATA+TGG | + | chr1_1:81273221-81273240 | Msa0048010:intron | 25.0% |
| ! | AAAAACAAATACCTCTTCTA+TGG | - | chr1_1:81273390-81273409 | None:intergenic | 25.0% |
| ! | GTTAGTGTTATCATCTTTAA+AGG | - | chr1_1:81273923-81273942 | None:intergenic | 25.0% |
| ! | ATAGAAACTATACACGAAAA+TGG | - | chr1_1:81274154-81274173 | None:intergenic | 25.0% |
| ! | TGTATAGTTTCTATATCGAA+CGG | + | chr1_1:81274160-81274179 | Msa0048010:intron | 25.0% |
| !! | TTATACAACTTTTCATGAAC+AGG | + | chr1_1:81274202-81274221 | Msa0048010:intron | 25.0% |
| !!! | TGGTTTTAGCATAAAATTTC+AGG | + | chr1_1:81274473-81274492 | Msa0048010:intron | 25.0% |
| !! | TTTTAGCATAAAATTTCAGG+AGG | + | chr1_1:81274476-81274495 | Msa0048010:intron | 25.0% |
| !! | ATATTCGATTTATCAGCTTT+TGG | - | chr1_1:81274881-81274900 | None:intergenic | 25.0% |
| ! | AGCATAACCAAAATGAAATA+TGG | + | chr1_1:81275043-81275062 | Msa0048010:CDS | 25.0% |
| !!! | ACCTTTTTTCAACACATTTT+CGG | - | chr1_1:81275074-81275093 | None:intergenic | 25.0% |
| !! | ATGTGTTGAAAAAAGGTATA+TGG | + | chr1_1:81275077-81275096 | Msa0048010:CDS | 25.0% |
| !! | TGTGTTGAAAAAAGGTATAT+GGG | + | chr1_1:81275078-81275097 | Msa0048010:CDS | 25.0% |
| !! | TCAAGAAACAAATTTTCTGA+TGG | + | chr1_1:81275103-81275122 | Msa0048010:CDS | 25.0% |
| ! | TGAAAAAGAAAATGAGATAC+AGG | + | chr1_1:81275129-81275148 | Msa0048010:CDS | 25.0% |
| ! | AAAAAGAAGTCATCAATTTG+AGG | + | chr1_1:81275260-81275279 | Msa0048010:CDS | 25.0% |
| ! | TACCTTAATTTCTTCATCTT+TGG | - | chr1_1:81275320-81275339 | None:intergenic | 25.0% |
| !!! | CTTTAGTTCTATGTAACAAA+AGG | - | chr1_1:81275525-81275544 | None:intergenic | 25.0% |
| ! | AGGTTAACTATAGAAGTAAA+AGG | - | chr1_1:81275754-81275773 | None:intergenic | 25.0% |
| !! | GTAATTTTATAGCATTGTTC+AGG | - | chr1_1:81275774-81275793 | None:intergenic | 25.0% |
| ! | AATGCTATAAAATTACTGCA+GGG | + | chr1_1:81275778-81275797 | Msa0048010:intron | 25.0% |
| !! | TAAAAGCCATCATTTGTTGT+TGG | + | chr1_1:81272314-81272333 | Msa0048010:five_prime_UTR | 30.0% |
| AAAACACCAACAACAAATGA+TGG | - | chr1_1:81272323-81272342 | None:intergenic | 30.0% | |
| ! | TTTCCTTTGGTATCCAATTT+TGG | - | chr1_1:81272378-81272397 | None:intergenic | 30.0% |
| !!! | TTGGTCTTCTATTTTGGTTA+TGG | - | chr1_1:81272477-81272496 | None:intergenic | 30.0% |
| TAACCAAAATAGAAGACCAA+AGG | + | chr1_1:81272477-81272496 | Msa0048010:five_prime_UTR | 30.0% | |
| !! | TTTCCTTTGGTCTTCTATTT+TGG | - | chr1_1:81272483-81272502 | None:intergenic | 30.0% |
| ! | TTTTTGTACTTAGCCTCAAT+AGG | + | chr1_1:81272532-81272551 | Msa0048010:five_prime_UTR | 30.0% |
| ! | TTTTGTACTTAGCCTCAATA+GGG | + | chr1_1:81272533-81272552 | Msa0048010:five_prime_UTR | 30.0% |
| AACAAATGAAGTATGATCAC+TGG | - | chr1_1:81272607-81272626 | None:intergenic | 30.0% | |
| ! | ACAACCATTTTCTTCTTTCT+TGG | - | chr1_1:81272644-81272663 | None:intergenic | 30.0% |
| CATTTGCAAAACAAACTCAT+AGG | + | chr1_1:81272716-81272735 | Msa0048010:CDS | 30.0% | |
| AACACCAATGGAAAATTAGA+TGG | + | chr1_1:81272805-81272824 | Msa0048010:intron | 30.0% | |
| ! | TTTAAGTGAACTCTTTTCCA+AGG | + | chr1_1:81272952-81272971 | Msa0048010:intron | 30.0% |
| ! | CTTTTACACATTAACAATGG+TGG | - | chr1_1:81273022-81273041 | None:intergenic | 30.0% |
| TCATGACTAAAAAGTGATAG+TGG | + | chr1_1:81273080-81273099 | Msa0048010:intron | 30.0% | |
| AAAAATCAATAGATCAAGGG+AGG | + | chr1_1:81273165-81273184 | Msa0048010:intron | 30.0% | |
| !! | GTTTTAATCTGTTGCAGAAA+AGG | + | chr1_1:81273295-81273314 | Msa0048010:intron | 30.0% |
| AACTGAAGCTAAGAAAGATA+AGG | + | chr1_1:81273364-81273383 | Msa0048010:CDS | 30.0% | |
| GAGAAATGAAGTAAGTAAGA+TGG | + | chr1_1:81273550-81273569 | Msa0048010:CDS | 30.0% | |
| AGAGGATCATCTTAAAAACA+AGG | + | chr1_1:81273592-81273611 | Msa0048010:CDS | 30.0% | |
| AAGATTACACACAGATCAAA+AGG | + | chr1_1:81273758-81273777 | Msa0048010:CDS | 30.0% | |
| GATTAAGATGTATAGAACTG+AGG | + | chr1_1:81273830-81273849 | Msa0048010:CDS | 30.0% | |
| AACGCATCATTAATGGAAAT+TGG | - | chr1_1:81273866-81273885 | None:intergenic | 30.0% | |
| CATTGTAAACGCATCATTAA+TGG | - | chr1_1:81273873-81273892 | None:intergenic | 30.0% | |
| !! | AAGATAAGAAAGCTTTGGAA+CGG | + | chr1_1:81273976-81273995 | Msa0048010:CDS | 30.0% |
| AACATAAGAAGATATATGCC+TGG | - | chr1_1:81274130-81274149 | None:intergenic | 30.0% | |
| ATAATCACGAATGAGATTAG+CGG | - | chr1_1:81274336-81274355 | None:intergenic | 30.0% | |
| ! | TTTTGGACTAACTTTTGCAT+AGG | + | chr1_1:81274415-81274434 | Msa0048010:intron | 30.0% |
| ! | CATAGGAATTTTGTATCTAC+TGG | + | chr1_1:81274432-81274451 | Msa0048010:intron | 30.0% |
| GGTTTATCTATACAGTAACA+TGG | + | chr1_1:81274453-81274472 | Msa0048010:intron | 30.0% | |
| ATGGAAAGATGAAAGTGATA+AGG | + | chr1_1:81274575-81274594 | Msa0048010:CDS | 30.0% | |
| AGAAGAAAGAAAGATTATGC+AGG | + | chr1_1:81274620-81274639 | Msa0048010:CDS | 30.0% | |
| AAAAGCAGAATCACAATTGA+AGG | + | chr1_1:81274692-81274711 | Msa0048010:CDS | 30.0% | |
| !! | ATACGGTATTTATTTTTCGC+AGG | + | chr1_1:81274775-81274794 | Msa0048010:intron | 30.0% |
| TTAAGTTTCGTAACGAACAA+TGG | + | chr1_1:81274902-81274921 | Msa0048010:CDS | 30.0% | |
| TTCCAAAAGCCAAACATAAA+AGG | + | chr1_1:81274983-81275002 | Msa0048010:CDS | 30.0% | |
| ! | TCTATGTTGCCTTTTATGTT+TGG | - | chr1_1:81274995-81275014 | None:intergenic | 30.0% |
| ! | GGTAGAACCATATTTCATTT+TGG | - | chr1_1:81275053-81275072 | None:intergenic | 30.0% |
| ACCGAAAATGTGTTGAAAAA+AGG | + | chr1_1:81275070-81275089 | Msa0048010:CDS | 30.0% | |
| ! | AGAAACAAATTTTCTGATGG+TGG | + | chr1_1:81275106-81275125 | Msa0048010:CDS | 30.0% |
| CACCAAAGATGAAGAAATTA+AGG | + | chr1_1:81275315-81275334 | Msa0048010:intron | 30.0% | |
| AGATGAAGAAATTAAGGTAC+TGG | + | chr1_1:81275321-81275340 | Msa0048010:intron | 30.0% | |
| TTGTCAATCGTAGAAAATAG+TGG | + | chr1_1:81275367-81275386 | Msa0048010:intron | 30.0% | |
| CATCAATAAAATCCGATGAT+AGG | + | chr1_1:81275659-81275678 | Msa0048010:intron | 30.0% | |
| GAAGTTCAAACTTCTCTAAA+AGG | + | chr1_1:81275692-81275711 | Msa0048010:intron | 30.0% | |
| CAATGCTATAAAATTACTGC+AGG | + | chr1_1:81275777-81275796 | Msa0048010:intron | 30.0% | |
| CTTTATGAAGAGAAAATTGG+AGG | + | chr1_1:81275823-81275842 | Msa0048010:three_prime_UTR | 30.0% | |
| ACACTTACCATCACCAAAAT+TGG | + | chr1_1:81272362-81272381 | Msa0048010:five_prime_UTR | 35.0% | |
| !! | TTGGTATCCAATTTTGGTGA+TGG | - | chr1_1:81272372-81272391 | None:intergenic | 35.0% |
| TCACCAAAATTGGATACCAA+AGG | + | chr1_1:81272372-81272391 | Msa0048010:five_prime_UTR | 35.0% | |
| !! | TAGCATACTCCATTTGTTGT+TGG | + | chr1_1:81272419-81272438 | Msa0048010:five_prime_UTR | 35.0% |
| TTATGGTAAGTGTACTGTTG+AGG | - | chr1_1:81272460-81272479 | None:intergenic | 35.0% | |
| !! | TAGGTGTTCTACTTTTGTGA+TGG | - | chr1_1:81272565-81272584 | None:intergenic | 35.0% |
| TCACAAAAGTAGAACACCTA+TGG | + | chr1_1:81272565-81272584 | Msa0048010:five_prime_UTR | 35.0% | |
| GAAAATGGTTGTCAATGAAG+AGG | + | chr1_1:81272652-81272671 | Msa0048010:exon | 35.0% | |
| TCATGCATGTAAAACACCAA+TGG | + | chr1_1:81272793-81272812 | Msa0048010:intron | 35.0% | |
| ! | GAGTCCATCTAATTTTCCAT+TGG | - | chr1_1:81272812-81272831 | None:intergenic | 35.0% |
| CTGACACAAGACCAAAAATA+AGG | - | chr1_1:81272874-81272893 | None:intergenic | 35.0% | |
| !!! | TATTTTTGGTCTTGTGTCAG+TGG | + | chr1_1:81272874-81272893 | Msa0048010:intron | 35.0% |
| ! | CTCTTTTCCAAGGTAACAAA+AGG | + | chr1_1:81272962-81272981 | Msa0048010:intron | 35.0% |
| ATCTTAATCTCGTCTTCAAG+AGG | - | chr1_1:81273819-81273838 | None:intergenic | 35.0% | |
| TCAGGAAGATAAGAAAGCTT+TGG | + | chr1_1:81273971-81273990 | Msa0048010:CDS | 35.0% | |
| AAAACTTTGACCTGAAGAGA+CGG | + | chr1_1:81274093-81274112 | Msa0048010:CDS | 35.0% | |
| ! | TACAACTTTTCATGAACAGG+AGG | + | chr1_1:81274205-81274224 | Msa0048010:intron | 35.0% |
| CCTCAAGTTCATGAATTGTT+TGG | - | chr1_1:81274289-81274308 | None:intergenic | 35.0% | |
| CCAAACAATTCATGAACTTG+AGG | + | chr1_1:81274286-81274305 | Msa0048010:CDS | 35.0% | |
| ! | TGATATGACGACTTGCATTT+TGG | + | chr1_1:81274398-81274417 | Msa0048010:intron | 35.0% |
| TAAAATTTCAGGAGGAGAAG+AGG | + | chr1_1:81274484-81274503 | Msa0048010:intron | 35.0% | |
| !!! | TTTTGCTGTTCTCTCTGATA+TGG | - | chr1_1:81274676-81274695 | None:intergenic | 35.0% |
| AGAAGGCTTAAAGCAATTCT+CGG | + | chr1_1:81274829-81274848 | Msa0048010:CDS | 35.0% | |
| TGGAGATACTGAAAATGCAT+TGG | - | chr1_1:81274861-81274880 | None:intergenic | 35.0% | |
| ! | TTGGAACAAAGTGTTTCCAA+CGG | - | chr1_1:81274969-81274988 | None:intergenic | 35.0% |
| !!! | TGCCTTTTATGTTTGGCTTT+TGG | - | chr1_1:81274988-81275007 | None:intergenic | 35.0% |
| AAAAGGCAACATAGACAGTA+TGG | + | chr1_1:81275000-81275019 | Msa0048010:CDS | 35.0% | |
| !!! | TTCATTTTGGTTATGCTACC+CGG | - | chr1_1:81275040-81275059 | None:intergenic | 35.0% |
| ! | TTTAGAGTCTTCATCAGCAT+TGG | - | chr1_1:81275176-81275195 | None:intergenic | 35.0% |
| !! | TGATTTAGAAAGCACTGATG+TGG | + | chr1_1:81275210-81275229 | Msa0048010:CDS | 35.0% |
| CGATTGACAACTTTGATATG+AGG | - | chr1_1:81275357-81275376 | None:intergenic | 35.0% | |
| CAATAAAATCCGATGATAGG+AGG | + | chr1_1:81275662-81275681 | Msa0048010:intron | 35.0% | |
| TGATGGTAAGTGTACTGTTG+AGG | - | chr1_1:81272355-81272374 | None:intergenic | 40.0% | |
| TAAGTGTACTGTTGAGGCTA+AGG | - | chr1_1:81272349-81272368 | None:intergenic | 40.0% | |
| ! | ACAACATCTGGTTTGACAAG+AGG | - | chr1_1:81272680-81272699 | None:intergenic | 40.0% |
| CAAACCAGATGTTGTTGTGT+TGG | + | chr1_1:81272685-81272704 | Msa0048010:CDS | 40.0% | |
| ATCTCCAACACAACAACATC+TGG | - | chr1_1:81272692-81272711 | None:intergenic | 40.0% | |
| ! | TAGATGGACTCATTGTGTCA+AGG | + | chr1_1:81272821-81272840 | Msa0048010:intron | 40.0% |
| !! | AATGAACTTGCTACATGCCA+TGG | + | chr1_1:81273320-81273339 | Msa0048010:CDS | 40.0% |
| TACATGCCATGGTGAAATCA+AGG | + | chr1_1:81273331-81273350 | Msa0048010:CDS | 40.0% | |
| ! | TTATGGCCTTGATTTCACCA+TGG | - | chr1_1:81273340-81273359 | None:intergenic | 40.0% |
| ATGGTGAAATCAAGGCCATA+AGG | + | chr1_1:81273339-81273358 | Msa0048010:CDS | 40.0% | |
| TGGTGAAATCAAGGCCATAA+GGG | + | chr1_1:81273340-81273359 | Msa0048010:CDS | 40.0% | |
| GAAAGATAAGGCCATAGAAG+AGG | + | chr1_1:81273376-81273395 | Msa0048010:CDS | 40.0% | |
| TGCGAGACTAAGACTTAAAG+AGG | + | chr1_1:81273574-81273593 | Msa0048010:CDS | 40.0% | |
| CTGTCAGTTTCTTGACTTCT+AGG | - | chr1_1:81273686-81273705 | None:intergenic | 40.0% | |
| AGACGAAAAGAAAGATGCGT+TGG | + | chr1_1:81273704-81273723 | Msa0048010:CDS | 40.0% | |
| TGATTCTGCAGCATATTGTG+CGG | - | chr1_1:81273730-81273749 | None:intergenic | 40.0% | |
| !! | GAAGTGCTGTAATCTGTAGA+TGG | - | chr1_1:81273953-81273972 | None:intergenic | 40.0% |
| TCTACAGATTACAGCACTTC+AGG | + | chr1_1:81273953-81273972 | Msa0048010:intron | 40.0% | |
| ACAGGAGGAGAACAAAATCT+TGG | + | chr1_1:81274220-81274239 | Msa0048010:intron | 40.0% | |
| AAATCTTGGAGAAAAGCCAC+CGG | + | chr1_1:81274234-81274253 | Msa0048010:CDS | 40.0% | |
| ! | CAACTTCCACAATCTTTTGC+CGG | - | chr1_1:81274256-81274275 | None:intergenic | 40.0% |
| GAGGAGCTCATCTTATCAAA+TGG | + | chr1_1:81274305-81274324 | Msa0048010:CDS | 40.0% | |
| CAGATTTCTGAGTTGCAAGT+AGG | + | chr1_1:81274362-81274381 | Msa0048010:intron | 40.0% | |
| ACTAGAGAGGGAATTAGCAA+GGG | + | chr1_1:81274509-81274528 | Msa0048010:CDS | 40.0% | |
| CAACAGAATTGCAACTGTTG+CGG | + | chr1_1:81274545-81274564 | Msa0048010:CDS | 40.0% | |
| TCTTCTAACCATTGCCTAAC+AGG | - | chr1_1:81274606-81274625 | None:intergenic | 40.0% | |
| AGGCTAAAAACGCTTGAAGA+AGG | + | chr1_1:81274812-81274831 | Msa0048010:CDS | 40.0% | |
| AGTTTCGTAACGAACAATGG+TGG | + | chr1_1:81274905-81274924 | Msa0048010:CDS | 40.0% | |
| !! | ACAATGGTGGATTGAGAAAC+AGG | + | chr1_1:81274918-81274937 | Msa0048010:CDS | 40.0% |
| AATGAGATACAGGTGAACAC+AGG | + | chr1_1:81275139-81275158 | Msa0048010:CDS | 40.0% | |
| GATGCTCACAAAGAAAGTTG+AGG | + | chr1_1:81275564-81275583 | Msa0048010:intron | 40.0% | |
| !! | GAAAGTTGAGGCATTGACAA+AGG | + | chr1_1:81275576-81275595 | Msa0048010:intron | 40.0% |
| CAAAGGCTATGGAAGTAGAA+TGG | + | chr1_1:81275593-81275612 | Msa0048010:intron | 40.0% | |
| !! | TCTGCTTTTCCTCCTATCAT+CGG | - | chr1_1:81275674-81275693 | None:intergenic | 40.0% |
| TCTCAGACTCTGTAAGTTAG+TGG | - | chr1_1:81275929-81275948 | None:intergenic | 40.0% | |
| CTTCTCTGTATGTACAGAGT+TGG | - | chr1_1:81275953-81275972 | None:intergenic | 40.0% | |
| !! | TGATGGAAAGTGCCCTATTG+AGG | - | chr1_1:81272548-81272567 | None:intergenic | 45.0% |
| !! | TTGGTCTTGTGTCAGTGGTA+AGG | + | chr1_1:81272879-81272898 | Msa0048010:intron | 45.0% |
| CTTAGCTTCAGTTGCCCTTA+TGG | - | chr1_1:81273357-81273376 | None:intergenic | 45.0% | |
| GGCGTGATGACACTTTCAAA+TGG | - | chr1_1:81273798-81273817 | None:intergenic | 45.0% | |
| GCTCACAAAGTCGAAAGAGT+TGG | + | chr1_1:81273998-81274017 | Msa0048010:CDS | 45.0% | |
| ATCACGAATGAGATTAGCGG+TGG | - | chr1_1:81274333-81274352 | None:intergenic | 45.0% | |
| CACTAGAGAGGGAATTAGCA+AGG | + | chr1_1:81274508-81274527 | Msa0048010:CDS | 45.0% | |
| CGCAACAGTTGCAATTCTGT+TGG | - | chr1_1:81274547-81274566 | None:intergenic | 45.0% | |
| CAACTGTTGCGGCTAATGAA+TGG | + | chr1_1:81274556-81274575 | Msa0048010:CDS | 45.0% | |
| GTGATAAGGTCATGCCTGTT+AGG | + | chr1_1:81274589-81274608 | Msa0048010:CDS | 45.0% | |
| TTATGCAGGCAGAGATGCAA+AGG | + | chr1_1:81274634-81274653 | Msa0048010:CDS | 45.0% | |
| AGGTCTACATCACAACCAAG+AGG | + | chr1_1:81274938-81274957 | Msa0048010:CDS | 45.0% | |
| TTTCCAACGGTAGATCCTCT+TGG | - | chr1_1:81274956-81274975 | None:intergenic | 45.0% | |
| GCAACATAGACAGTATGGCT+GGG | + | chr1_1:81275005-81275024 | Msa0048010:CDS | 45.0% | |
| ! | TGGTTATGCTACCCGGTTTT+CGG | - | chr1_1:81275033-81275052 | None:intergenic | 45.0% |
| !! | TGAGGCATTGACAAAGGCTA+TGG | + | chr1_1:81275582-81275601 | Msa0048010:intron | 45.0% |
| !!! | TAGTAATAAATAATTTTATA+CGG | + | chr1_1:81274758-81274777 | Msa0048010:intron | 5.0% |
| TGGCATTGCTTGAAGCAGAG+AGG | + | chr1_1:81274018-81274037 | Msa0048010:CDS | 50.0% | |
| AGATCTCGATCCGTCTCTTC+AGG | - | chr1_1:81274106-81274125 | None:intergenic | 50.0% | |
| AAGCCACCGGCAAAAGATTG+TGG | + | chr1_1:81274247-81274266 | Msa0048010:CDS | 50.0% | |
| ! | CTTCCACAATCTTTTGCCGG+TGG | - | chr1_1:81274253-81274272 | None:intergenic | 50.0% |
| AGGAGAAGAGGACACTAGAG+AGG | + | chr1_1:81274496-81274515 | Msa0048010:CDS | 50.0% | |
| GGAGAAGAGGACACTAGAGA+GGG | + | chr1_1:81274497-81274516 | Msa0048010:CDS | 50.0% | |
| AGGTCATGCCTGTTAGGCAA+TGG | + | chr1_1:81274595-81274614 | Msa0048010:CDS | 50.0% | |
| CGCAGGATAAACTGAAGCTG+AGG | + | chr1_1:81274792-81274811 | Msa0048010:intron | 50.0% | |
| CAACCAAGAGGATCTACCGT+TGG | + | chr1_1:81274950-81274969 | Msa0048010:CDS | 50.0% | |
| GGCAACATAGACAGTATGGC+TGG | + | chr1_1:81275004-81275023 | Msa0048010:CDS | 50.0% | |
| TATGGCTGGGAACCGAAAAC+CGG | + | chr1_1:81275018-81275037 | Msa0048010:CDS | 50.0% | |
| !! | GAAAGCACTGATGTGGTCTC+TGG | + | chr1_1:81275217-81275236 | Msa0048010:CDS | 50.0% |
| ATGGCTGGGAACCGAAAACC+GGG | + | chr1_1:81275019-81275038 | Msa0048010:CDS | 55.0% | |
| GAGACGGATCGAGATCTGCC+AGG | + | chr1_1:81274109-81274128 | Msa0048010:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 81272297 | 81276024 | 81272297 | ID=Msa0048010;Name=Msa0048010 |
| chr1_1 | mRNA | 81272297 | 81276024 | 81272297 | ID=Msa0048010-mRNA-1;Parent=Msa0048010;Name=Msa0048010-mRNA-1;_AED=0.12;_eAED=0.12;_QI=359|0.75|0.77|1|1|1|9|221|492 |
| chr1_1 | exon | 81272297 | 81272737 | 81272297 | ID=Msa0048010-mRNA-1:exon:28009;Parent=Msa0048010-mRNA-1 |
| chr1_1 | exon | 81273312 | 81273397 | 81273312 | ID=Msa0048010-mRNA-1:exon:28010;Parent=Msa0048010-mRNA-1 |
| chr1_1 | exon | 81273548 | 81273613 | 81273548 | ID=Msa0048010-mRNA-1:exon:28011;Parent=Msa0048010-mRNA-1 |
| chr1_1 | exon | 81273681 | 81273851 | 81273681 | ID=Msa0048010-mRNA-1:exon:28012;Parent=Msa0048010-mRNA-1 |
| chr1_1 | exon | 81273960 | 81274160 | 81273960 | ID=Msa0048010-mRNA-1:exon:28013;Parent=Msa0048010-mRNA-1 |
| chr1_1 | exon | 81274224 | 81274379 | 81274224 | ID=Msa0048010-mRNA-1:exon:28014;Parent=Msa0048010-mRNA-1 |
| chr1_1 | exon | 81274495 | 81274713 | 81274495 | ID=Msa0048010-mRNA-1:exon:28015;Parent=Msa0048010-mRNA-1 |
| chr1_1 | exon | 81274797 | 81275289 | 81274797 | ID=Msa0048010-mRNA-1:exon:28016;Parent=Msa0048010-mRNA-1 |
| chr1_1 | exon | 81275799 | 81276024 | 81275799 | ID=Msa0048010-mRNA-1:exon:28017;Parent=Msa0048010-mRNA-1 |
| chr1_1 | five_prime_UTR | 81272297 | 81272655 | 81272297 | ID=Msa0048010-mRNA-1:five_prime_utr;Parent=Msa0048010-mRNA-1 |
| chr1_1 | CDS | 81272656 | 81272737 | 81272656 | ID=Msa0048010-mRNA-1:cds;Parent=Msa0048010-mRNA-1 |
| chr1_1 | CDS | 81273312 | 81273397 | 81273312 | ID=Msa0048010-mRNA-1:cds;Parent=Msa0048010-mRNA-1 |
| chr1_1 | CDS | 81273548 | 81273613 | 81273548 | ID=Msa0048010-mRNA-1:cds;Parent=Msa0048010-mRNA-1 |
| chr1_1 | CDS | 81273681 | 81273851 | 81273681 | ID=Msa0048010-mRNA-1:cds;Parent=Msa0048010-mRNA-1 |
| chr1_1 | CDS | 81273960 | 81274160 | 81273960 | ID=Msa0048010-mRNA-1:cds;Parent=Msa0048010-mRNA-1 |
| chr1_1 | CDS | 81274224 | 81274379 | 81274224 | ID=Msa0048010-mRNA-1:cds;Parent=Msa0048010-mRNA-1 |
| chr1_1 | CDS | 81274495 | 81274713 | 81274495 | ID=Msa0048010-mRNA-1:cds;Parent=Msa0048010-mRNA-1 |
| chr1_1 | CDS | 81274797 | 81275289 | 81274797 | ID=Msa0048010-mRNA-1:cds;Parent=Msa0048010-mRNA-1 |
| chr1_1 | CDS | 81275799 | 81275803 | 81275799 | ID=Msa0048010-mRNA-1:cds;Parent=Msa0048010-mRNA-1 |
| chr1_1 | three_prime_UTR | 81275804 | 81276024 | 81275804 | ID=Msa0048010-mRNA-1:three_prime_utr;Parent=Msa0048010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
