Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0141420 | XP_013462928.1 | 95.519 | 491 | 12 | 1 | 1 | 491 | 1 | 481 | 0.0 | 934 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0141420 | sp|Q8GYX3|MP705_ARATH | 53.750 | 480 | 166 | 8 | 16 | 490 | 9 | 437 | 2.11e-145 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0141420 | A0A072V6K1 | 95.519 | 491 | 12 | 1 | 1 | 491 | 1 | 481 | 0.0 | 934 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048010 | Msa0141420 | 0.991711 | 4.052335e-189 | -8.615850e-47 |
| Msa0141420 | Msa0197880 | 0.803868 | 2.838497e-49 | -8.615850e-47 |
| Msa0141420 | Msa0239650 | 0.989886 | 4.330323e-180 | -8.615850e-47 |
| Msa0141420 | Msa0277650 | 0.903131 | 4.759473e-79 | -8.615850e-47 |
| Msa0141420 | Msa0317240 | 0.908342 | 1.898348e-81 | -8.615850e-47 |
| Msa0141420 | Msa0527610 | 0.895471 | 9.284907e-76 | -8.615850e-47 |
| Msa0141420 | Msa1117910 | 0.810594 | 1.066705e-50 | -8.615850e-47 |
| Msa0141420 | Msa1447210 | 0.993282 | 1.137825e-198 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0141420 | MtrunA17_Chr2g0290411 | 95.519 | 491 | 12 | 1 | 1 | 491 | 1 | 481 | 0.0 | 934 |
| Msa0141420 | MtrunA17_Chr4g0076251 | 65.070 | 501 | 142 | 4 | 6 | 491 | 19 | 501 | 0.0 | 593 |
| Msa0141420 | MtrunA17_Chr8g0391771 | 45.749 | 494 | 226 | 10 | 13 | 491 | 57 | 523 | 1.35e-125 | 379 |
| Msa0141420 | MtrunA17_Chr1g0161371 | 45.473 | 497 | 223 | 10 | 13 | 491 | 52 | 518 | 3.74e-124 | 375 |
| Msa0141420 | MtrunA17_Chr8g0344311 | 46.307 | 501 | 211 | 10 | 13 | 491 | 53 | 517 | 1.57e-122 | 371 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0141420 | AT4G17220.1 | 53.750 | 480 | 166 | 8 | 16 | 490 | 9 | 437 | 2.14e-146 | 429 |
| Msa0141420 | AT1G24764.1 | 45.749 | 494 | 226 | 8 | 13 | 490 | 74 | 541 | 5.74e-131 | 394 |
| Msa0141420 | AT1G24764.3 | 45.749 | 494 | 226 | 8 | 13 | 490 | 133 | 600 | 1.88e-129 | 392 |
| Msa0141420 | AT1G68060.1 | 46.761 | 494 | 220 | 11 | 13 | 491 | 66 | 531 | 2.41e-129 | 389 |
| Msa0141420 | AT1G14840.1 | 44.869 | 497 | 224 | 8 | 13 | 491 | 49 | 513 | 1.69e-126 | 381 |
| Msa0141420 | AT2G01750.1 | 44.785 | 489 | 233 | 6 | 13 | 490 | 73 | 535 | 1.23e-125 | 380 |
| Msa0141420 | AT2G01750.2 | 44.785 | 489 | 233 | 6 | 13 | 490 | 73 | 535 | 1.24e-125 | 380 |
| Msa0141420 | AT1G14840.2 | 42.455 | 497 | 221 | 9 | 13 | 491 | 49 | 498 | 1.50e-111 | 342 |
| Msa0141420 | AT1G24764.2 | 46.024 | 415 | 182 | 8 | 93 | 491 | 1 | 389 | 1.54e-108 | 331 |
Find 98 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCAGTTTCTTGACTTCT+AGG | 0.102098 | 1_3:-76288316 | None:intergenic |
| TTTCCTTTGGTCTTCTATTT+TGG | 0.106408 | 1_3:-76287112 | None:intergenic |
| TTTCCTTTGGTATCCAATTT+TGG | 0.142874 | 1_3:-76287007 | None:intergenic |
| CTTAGCTTCAGTTGCCCTTA+TGG | 0.199525 | 1_3:-76287987 | None:intergenic |
| ATTCTTTATGAAGAGAAAAT+TGG | 0.212662 | 1_3:+76290453 | Msa0141420:three_prime_UTR |
| GGTAGAACCATATTTCATTT+TGG | 0.221595 | 1_3:-76289683 | None:intergenic |
| TTCCAAAAGCCAAACATAAA+AGG | 0.248082 | 1_3:+76289616 | Msa0141420:CDS |
| ACACTTACCATCACCAAAAT+TGG | 0.257334 | 1_3:+76286994 | Msa0141420:five_prime_UTR |
| TCTTCTAACCATTGCCTAAC+AGG | 0.277147 | 1_3:-76289236 | None:intergenic |
| ATAGAAACTATACACGAAAA+TGG | 0.289286 | 1_3:-76288784 | None:intergenic |
| ATATTCGATTTATCAGCTTT+TGG | 0.300457 | 1_3:-76289511 | None:intergenic |
| AGCATAACCAAAATGAAATA+TGG | 0.322617 | 1_3:+76289676 | Msa0141420:CDS |
| TTTACCAAGAAAGAAGAAAA+TGG | 0.324121 | 1_3:+76287269 | Msa0141420:exon |
| CCTCAAGTTCATGAATTGTT+TGG | 0.350831 | 1_3:-76288919 | None:intergenic |
| TCTACAGATTACAGCACTTC+AGG | 0.391041 | 1_3:+76288586 | Msa0141420:intron |
| GAAAGCACTGATGTGGTCTC+TGG | 0.402489 | 1_3:+76289850 | Msa0141420:CDS |
| GTGATAAGGTCATGCCTGTT+AGG | 0.415652 | 1_3:+76289222 | Msa0141420:CDS |
| TCAGGAAGATAAGAAAGCTT+TGG | 0.418519 | 1_3:+76288604 | Msa0141420:CDS |
| ACAATGGTGGATTGAGAAAC+AGG | 0.418721 | 1_3:+76289551 | Msa0141420:CDS |
| AAAAGGCAACATAGACAGTA+TGG | 0.427289 | 1_3:+76289633 | Msa0141420:CDS |
| TAGCATACTCCATTTGTTGT+TGG | 0.431105 | 1_3:+76287051 | Msa0141420:five_prime_UTR |
| AGATCTCGATCCGTCTCTTC+AGG | 0.431500 | 1_3:-76288736 | None:intergenic |
| ATCTCCAACACAACAACATC+TGG | 0.433211 | 1_3:-76287321 | None:intergenic |
| AAAAGCAGAATCACAATTGA+AGG | 0.437230 | 1_3:+76289325 | Msa0141420:CDS |
| TATGGCTGGGAACCGAAAAC+CGG | 0.449172 | 1_3:+76289651 | Msa0141420:CDS |
| AAGATTACACACAGATCAAA+AGG | 0.452964 | 1_3:+76288391 | Msa0141420:CDS |
| GAGAAATGAAGTAAGTAAGA+TGG | 0.460243 | 1_3:+76288183 | Msa0141420:CDS |
| ATGGTGAAATCAAGGCCATA+AGG | 0.461955 | 1_3:+76287972 | Msa0141420:CDS |
| ACAGGAGGAGAACAAAATCT+TGG | 0.462576 | 1_3:+76288853 | Msa0141420:intron |
| AGAAGGCTTAAAGCAATTCT+CGG | 0.473398 | 1_3:+76289462 | Msa0141420:CDS |
| GAGGAGCTCATCTTATCAAA+TGG | 0.475247 | 1_3:+76288938 | Msa0141420:CDS |
| CGCAACAGTTGCAATTCTGT+TGG | 0.479391 | 1_3:-76289177 | None:intergenic |
| TTTAGAGTCTTCATCAGCAT+TGG | 0.483845 | 1_3:-76289806 | None:intergenic |
| TGGAGATACTGAAAATGCAT+TGG | 0.489587 | 1_3:-76289491 | None:intergenic |
| AAAACACCAACAACAAATGA+TGG | 0.495818 | 1_3:-76286952 | None:intergenic |
| TCTCAGACTCTGTAAGTTAG+TGG | 0.498944 | 1_3:-76290559 | None:intergenic |
| TCACAAAAGTAGAACACCTA+TGG | 0.501557 | 1_3:+76287197 | Msa0141420:five_prime_UTR |
| TAAAAGCCATCATTTGTTGT+TGG | 0.502135 | 1_3:+76286946 | Msa0141420:five_prime_UTR |
| GGCAACATAGACAGTATGGC+TGG | 0.502574 | 1_3:+76289637 | Msa0141420:CDS |
| TTTCCAACGGTAGATCCTCT+TGG | 0.502837 | 1_3:-76289586 | None:intergenic |
| CATTTGCAAAACAAACTCAT+AGG | 0.508565 | 1_3:+76287348 | Msa0141420:CDS |
| CAAACCAGATGTTGTTGTGT+TGG | 0.510088 | 1_3:+76287317 | Msa0141420:CDS |
| ATGGAAAGATGAAAGTGATA+AGG | 0.511209 | 1_3:+76289208 | Msa0141420:CDS |
| CTTTATGAAGAGAAAATTGG+AGG | 0.512076 | 1_3:+76290456 | Msa0141420:three_prime_UTR |
| CAACTGTTGCGGCTAATGAA+TGG | 0.512914 | 1_3:+76289189 | Msa0141420:CDS |
| CTTCTCTGTATGTACAGAGT+TGG | 0.523530 | 1_3:-76290583 | None:intergenic |
| TAAGTGTACTGTTGAGGCTA+AGG | 0.523957 | 1_3:-76287083 | None:intergenic |
| TACATGCCATGGTGAAATCA+AGG | 0.527571 | 1_3:+76287964 | Msa0141420:CDS |
| TGCGAGACTAAGACTTAAAG+AGG | 0.531452 | 1_3:+76288207 | Msa0141420:CDS |
| GGCGTGATGACACTTTCAAA+TGG | 0.532270 | 1_3:-76288428 | None:intergenic |
| AACATAAGAAGATATATGCC+TGG | 0.538469 | 1_3:-76288760 | None:intergenic |
| TAAAATTTCAGGAGGAGAAG+AGG | 0.539106 | 1_3:+76289117 | Msa0141420:intron |
| CCAAACAATTCATGAACTTG+AGG | 0.539948 | 1_3:+76288919 | Msa0141420:CDS |
| AACAAATGAAGTATGATCAC+TGG | 0.540299 | 1_3:-76287236 | None:intergenic |
| AAGCCACCGGCAAAAGATTG+TGG | 0.540851 | 1_3:+76288880 | Msa0141420:CDS |
| TATATATAGTATTATTCCAT+AGG | 0.547203 | 1_3:-76287213 | None:intergenic |
| AGAAGAAAGAAAGATTATGC+AGG | 0.548152 | 1_3:+76289253 | Msa0141420:CDS |
| CACTAGAGAGGGAATTAGCA+AGG | 0.557388 | 1_3:+76289141 | Msa0141420:CDS |
| CAACAGAATTGCAACTGTTG+CGG | 0.557551 | 1_3:+76289178 | Msa0141420:CDS |
| TTAAGTTTCGTAACGAACAA+TGG | 0.569896 | 1_3:+76289535 | Msa0141420:CDS |
| GAGACGGATCGAGATCTGCC+AGG | 0.577223 | 1_3:+76288742 | Msa0141420:CDS |
| TGGTGAAATCAAGGCCATAA+GGG | 0.577785 | 1_3:+76287973 | Msa0141420:CDS |
| ATCTTAATCTCGTCTTCAAG+AGG | 0.579230 | 1_3:-76288449 | None:intergenic |
| TGATGGAAAGTGCCCTATTG+AGG | 0.579242 | 1_3:-76287177 | None:intergenic |
| GAAAATGGTTGTCAATGAAG+AGG | 0.581609 | 1_3:+76287284 | Msa0141420:exon |
| AGACGAAAAGAAAGATGCGT+TGG | 0.582689 | 1_3:+76288337 | Msa0141420:CDS |
| AACTGAAGCTAAGAAAGATA+AGG | 0.586496 | 1_3:+76287997 | Msa0141420:CDS |
| GCTCACAAAGTCGAAAGAGT+TGG | 0.587191 | 1_3:+76288631 | Msa0141420:CDS |
| GAAAGATAAGGCCATAGAAG+AGG | 0.588351 | 1_3:+76288009 | Msa0141420:CDS |
| ACAACATCTGGTTTGACAAG+AGG | 0.589315 | 1_3:-76287309 | None:intergenic |
| TTATGCAGGCAGAGATGCAA+AGG | 0.590511 | 1_3:+76289267 | Msa0141420:CDS |
| AGGAGAAGAGGACACTAGAG+AGG | 0.591941 | 1_3:+76289129 | Msa0141420:CDS |
| CGCAGGATAAACTGAAGCTG+AGG | 0.593606 | 1_3:+76289425 | Msa0141420:intron |
| AAAACTTTGACCTGAAGAGA+CGG | 0.598972 | 1_3:+76288726 | Msa0141420:CDS |
| ATGGCTGGGAACCGAAAACC+GGG | 0.599697 | 1_3:+76289652 | Msa0141420:CDS |
| AGGTCATGCCTGTTAGGCAA+TGG | 0.612732 | 1_3:+76289228 | Msa0141420:CDS |
| TTATGGCCTTGATTTCACCA+TGG | 0.621711 | 1_3:-76287970 | None:intergenic |
| TCACCAAAATTGGATACCAA+AGG | 0.622755 | 1_3:+76287004 | Msa0141420:five_prime_UTR |
| TAACCAAAATAGAAGACCAA+AGG | 0.624121 | 1_3:+76287109 | Msa0141420:five_prime_UTR |
| AAGATAAGAAAGCTTTGGAA+CGG | 0.627349 | 1_3:+76288609 | Msa0141420:CDS |
| TGATTTAGAAAGCACTGATG+TGG | 0.627887 | 1_3:+76289843 | Msa0141420:CDS |
| AATGAACTTGCTACATGCCA+TGG | 0.628116 | 1_3:+76287953 | Msa0141420:CDS |
| AGTTTCGTAACGAACAATGG+TGG | 0.630214 | 1_3:+76289538 | Msa0141420:CDS |
| CAACCAAGAGGATCTACCGT+TGG | 0.630663 | 1_3:+76289583 | Msa0141420:CDS |
| ATAATCACGAATGAGATTAG+CGG | 0.637427 | 1_3:-76288966 | None:intergenic |
| AAATCTTGGAGAAAAGCCAC+CGG | 0.637665 | 1_3:+76288867 | Msa0141420:CDS |
| TTATGGTAAGTGTACTGTTG+AGG | 0.644306 | 1_3:-76287089 | None:intergenic |
| GCAACATAGACAGTATGGCT+GGG | 0.648667 | 1_3:+76289638 | Msa0141420:CDS |
| TGGCATTGCTTGAAGCAGAG+AGG | 0.652208 | 1_3:+76288651 | Msa0141420:CDS |
| TTGGAACAAAGTGTTTCCAA+CGG | 0.656799 | 1_3:-76289599 | None:intergenic |
| ATCACGAATGAGATTAGCGG+TGG | 0.659965 | 1_3:-76288963 | None:intergenic |
| GGAGAAGAGGACACTAGAGA+GGG | 0.660251 | 1_3:+76289130 | Msa0141420:CDS |
| AATGAGATACAGGTGAACAC+AGG | 0.676366 | 1_3:+76289772 | Msa0141420:CDS |
| TGATGGTAAGTGTACTGTTG+AGG | 0.679865 | 1_3:-76286984 | None:intergenic |
| ACTAGAGAGGGAATTAGCAA+GGG | 0.681716 | 1_3:+76289142 | Msa0141420:CDS |
| GATTAAGATGTATAGAACTG+AGG | 0.694125 | 1_3:+76288463 | Msa0141420:CDS |
| AGGTCTACATCACAACCAAG+AGG | 0.700161 | 1_3:+76289571 | Msa0141420:CDS |
| TGATTCTGCAGCATATTGTG+CGG | 0.724358 | 1_3:-76288360 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGGTATTTAAAAAAATAA+AGG | + | chr1_3:76287612-76287631 | Msa0141420:intron | 10.0% |
| !!! | TAATTTATTTTTTTCTATGT+AGG | + | chr1_3:76289348-76289367 | Msa0141420:intron | 10.0% |
| !!! | TATATAAAGTATTTTTCCTT+TGG | - | chr1_3:76287128-76287147 | None:intergenic | 15.0% |
| !! | TATATATAGTATTATTCCAT+AGG | - | chr1_3:76287216-76287235 | None:intergenic | 15.0% |
| !! | TTAAAAAAATCAATAGATCA+AGG | + | chr1_3:76287794-76287813 | Msa0141420:intron | 15.0% |
| !! | TAAAAAAATCAATAGATCAA+GGG | + | chr1_3:76287795-76287814 | Msa0141420:intron | 15.0% |
| !!! | CTATTTTTACTCCTTATTTT+TGG | + | chr1_3:76287492-76287511 | Msa0141420:intron | 20.0% |
| !!! | TTTCTTTTACACATTAACAA+TGG | - | chr1_3:76287657-76287676 | None:intergenic | 20.0% |
| !! | AACAAATAATGTTCTAACTT+TGG | - | chr1_3:76288089-76288108 | None:intergenic | 20.0% |
| !!! | CATAGAATTTATCATTGTTT+TGG | - | chr1_3:76288262-76288281 | None:intergenic | 20.0% |
| !! | TAAAAAAAGAAGTCAGATAA+CGG | - | chr1_3:76290071-76290090 | None:intergenic | 20.0% |
| !!! | TTTAGTTCTATGTAACAAAA+GGG | - | chr1_3:76290157-76290176 | None:intergenic | 20.0% |
| !! | ATTCTTTATGAAGAGAAAAT+TGG | + | chr1_3:76290453-76290472 | Msa0141420:three_prime_UTR | 20.0% |
| !! | ATACTATAGTGTTTTTCCTT+TGG | - | chr1_3:76287023-76287042 | None:intergenic | 25.0% |
| ! | ACAAAAATACCAACAACAAA+TGG | - | chr1_3:76287063-76287082 | None:intergenic | 25.0% |
| ! | TTTACCAAGAAAGAAGAAAA+TGG | + | chr1_3:76287269-76287288 | Msa0141420:exon | 25.0% |
| ! | ATTTGCTTCATCATTTGATT+AGG | + | chr1_3:76287401-76287420 | Msa0141420:intron | 25.0% |
| !!! | TGCACTTTTTTTTTATCGTA+AGG | + | chr1_3:76287551-76287570 | Msa0141420:intron | 25.0% |
| !! | TTAAATACCTTTTGTTACCT+TGG | - | chr1_3:76287604-76287623 | None:intergenic | 25.0% |
| ! | AACTAGTGACAATTTATTCA+TGG | + | chr1_3:76287736-76287755 | Msa0141420:intron | 25.0% |
| !! | ATCACAGTTTTCTTTGAATA+TGG | + | chr1_3:76287854-76287873 | Msa0141420:intron | 25.0% |
| ! | AAAAACAAATACCTCTTCTA+TGG | - | chr1_3:76288023-76288042 | None:intergenic | 25.0% |
| ! | GTTAGTGTTATCATCTTTAA+AGG | - | chr1_3:76288556-76288575 | None:intergenic | 25.0% |
| ! | ATAGAAACTATACACGAAAA+TGG | - | chr1_3:76288787-76288806 | None:intergenic | 25.0% |
| ! | TGTATAGTTTCTATATCGAA+CGG | + | chr1_3:76288793-76288812 | Msa0141420:intron | 25.0% |
| !! | TTATACAACTTTTCATGAAC+AGG | + | chr1_3:76288835-76288854 | Msa0141420:intron | 25.0% |
| !!! | TGGTTTTAGCATAAAATTTC+AGG | + | chr1_3:76289106-76289125 | Msa0141420:intron | 25.0% |
| !! | TTTTAGCATAAAATTTCAGG+AGG | + | chr1_3:76289109-76289128 | Msa0141420:intron | 25.0% |
| !! | ATATTCGATTTATCAGCTTT+TGG | - | chr1_3:76289514-76289533 | None:intergenic | 25.0% |
| ! | AGCATAACCAAAATGAAATA+TGG | + | chr1_3:76289676-76289695 | Msa0141420:CDS | 25.0% |
| !!! | ACCTTTTTTCAACACATTTT+CGG | - | chr1_3:76289707-76289726 | None:intergenic | 25.0% |
| !! | ATGTGTTGAAAAAAGGTATA+TGG | + | chr1_3:76289710-76289729 | Msa0141420:CDS | 25.0% |
| !! | TGTGTTGAAAAAAGGTATAT+GGG | + | chr1_3:76289711-76289730 | Msa0141420:CDS | 25.0% |
| !! | TCAAGAAACAAATTTTCTGA+TGG | + | chr1_3:76289736-76289755 | Msa0141420:CDS | 25.0% |
| ! | TGAAAAAGAAAATGAGATAC+AGG | + | chr1_3:76289762-76289781 | Msa0141420:CDS | 25.0% |
| ! | AAAAAGAAGTCATCAATTTG+AGG | + | chr1_3:76289893-76289912 | Msa0141420:CDS | 25.0% |
| ! | TACCTTAATTTCTTCATCTT+TGG | - | chr1_3:76289953-76289972 | None:intergenic | 25.0% |
| !!! | CTTTAGTTCTATGTAACAAA+AGG | - | chr1_3:76290158-76290177 | None:intergenic | 25.0% |
| ! | AGGTTAACTATAGAAGTAAA+AGG | - | chr1_3:76290387-76290406 | None:intergenic | 25.0% |
| !! | GTAATTTTATAGCATTGTTC+AGG | - | chr1_3:76290407-76290426 | None:intergenic | 25.0% |
| ! | AATGCTATAAAATTACTGCA+GGG | + | chr1_3:76290411-76290430 | Msa0141420:intron | 25.0% |
| !! | TAAAAGCCATCATTTGTTGT+TGG | + | chr1_3:76286946-76286965 | Msa0141420:five_prime_UTR | 30.0% |
| AAAACACCAACAACAAATGA+TGG | - | chr1_3:76286955-76286974 | None:intergenic | 30.0% | |
| ! | TTTCCTTTGGTATCCAATTT+TGG | - | chr1_3:76287010-76287029 | None:intergenic | 30.0% |
| !!! | TTGGTCTTCTATTTTGGTTA+TGG | - | chr1_3:76287109-76287128 | None:intergenic | 30.0% |
| TAACCAAAATAGAAGACCAA+AGG | + | chr1_3:76287109-76287128 | Msa0141420:five_prime_UTR | 30.0% | |
| !! | TTTCCTTTGGTCTTCTATTT+TGG | - | chr1_3:76287115-76287134 | None:intergenic | 30.0% |
| ! | TTTTTGTACTTAGCCTCAAT+AGG | + | chr1_3:76287164-76287183 | Msa0141420:five_prime_UTR | 30.0% |
| ! | TTTTGTACTTAGCCTCAATA+GGG | + | chr1_3:76287165-76287184 | Msa0141420:five_prime_UTR | 30.0% |
| AACAAATGAAGTATGATCAC+TGG | - | chr1_3:76287239-76287258 | None:intergenic | 30.0% | |
| ! | ACAACCATTTTCTTCTTTCT+TGG | - | chr1_3:76287276-76287295 | None:intergenic | 30.0% |
| CATTTGCAAAACAAACTCAT+AGG | + | chr1_3:76287348-76287367 | Msa0141420:CDS | 30.0% | |
| AACACCAATGGAAAATTAGA+TGG | + | chr1_3:76287437-76287456 | Msa0141420:intron | 30.0% | |
| ! | TTTAAGTGAACTCTTTTCCA+AGG | + | chr1_3:76287584-76287603 | Msa0141420:intron | 30.0% |
| ! | CTTTTACACATTAACAATGG+TGG | - | chr1_3:76287654-76287673 | None:intergenic | 30.0% |
| TCATGACTAAAAAGTGATAG+TGG | + | chr1_3:76287712-76287731 | Msa0141420:intron | 30.0% | |
| AAAAATCAATAGATCAAGGG+AGG | + | chr1_3:76287798-76287817 | Msa0141420:intron | 30.0% | |
| !! | GTTTTAATCTGTTGCAGAAA+AGG | + | chr1_3:76287928-76287947 | Msa0141420:intron | 30.0% |
| AACTGAAGCTAAGAAAGATA+AGG | + | chr1_3:76287997-76288016 | Msa0141420:CDS | 30.0% | |
| GAGAAATGAAGTAAGTAAGA+TGG | + | chr1_3:76288183-76288202 | Msa0141420:CDS | 30.0% | |
| AGAGGATCATCTTAAAAACA+AGG | + | chr1_3:76288225-76288244 | Msa0141420:CDS | 30.0% | |
| AAGATTACACACAGATCAAA+AGG | + | chr1_3:76288391-76288410 | Msa0141420:CDS | 30.0% | |
| GATTAAGATGTATAGAACTG+AGG | + | chr1_3:76288463-76288482 | Msa0141420:CDS | 30.0% | |
| AACGCATCATTAATGGAAAT+TGG | - | chr1_3:76288499-76288518 | None:intergenic | 30.0% | |
| CATTGTAAACGCATCATTAA+TGG | - | chr1_3:76288506-76288525 | None:intergenic | 30.0% | |
| !! | AAGATAAGAAAGCTTTGGAA+CGG | + | chr1_3:76288609-76288628 | Msa0141420:CDS | 30.0% |
| AACATAAGAAGATATATGCC+TGG | - | chr1_3:76288763-76288782 | None:intergenic | 30.0% | |
| ATAATCACGAATGAGATTAG+CGG | - | chr1_3:76288969-76288988 | None:intergenic | 30.0% | |
| ! | TTTTGGACTAACTTTTGCAT+AGG | + | chr1_3:76289048-76289067 | Msa0141420:intron | 30.0% |
| ! | CATAGGAATTTTGTATCTAC+TGG | + | chr1_3:76289065-76289084 | Msa0141420:intron | 30.0% |
| GGTTTATCTATACAGTAACA+TGG | + | chr1_3:76289086-76289105 | Msa0141420:intron | 30.0% | |
| ATGGAAAGATGAAAGTGATA+AGG | + | chr1_3:76289208-76289227 | Msa0141420:CDS | 30.0% | |
| AGAAGAAAGAAAGATTATGC+AGG | + | chr1_3:76289253-76289272 | Msa0141420:CDS | 30.0% | |
| AAAAGCAGAATCACAATTGA+AGG | + | chr1_3:76289325-76289344 | Msa0141420:CDS | 30.0% | |
| !! | ATACGGTATTTATTTTTCGC+AGG | + | chr1_3:76289408-76289427 | Msa0141420:intron | 30.0% |
| TTAAGTTTCGTAACGAACAA+TGG | + | chr1_3:76289535-76289554 | Msa0141420:CDS | 30.0% | |
| TTCCAAAAGCCAAACATAAA+AGG | + | chr1_3:76289616-76289635 | Msa0141420:CDS | 30.0% | |
| ! | TCTATGTTGCCTTTTATGTT+TGG | - | chr1_3:76289628-76289647 | None:intergenic | 30.0% |
| ! | GGTAGAACCATATTTCATTT+TGG | - | chr1_3:76289686-76289705 | None:intergenic | 30.0% |
| ACCGAAAATGTGTTGAAAAA+AGG | + | chr1_3:76289703-76289722 | Msa0141420:CDS | 30.0% | |
| ! | AGAAACAAATTTTCTGATGG+TGG | + | chr1_3:76289739-76289758 | Msa0141420:CDS | 30.0% |
| CACCAAAGATGAAGAAATTA+AGG | + | chr1_3:76289948-76289967 | Msa0141420:intron | 30.0% | |
| AGATGAAGAAATTAAGGTAC+TGG | + | chr1_3:76289954-76289973 | Msa0141420:intron | 30.0% | |
| TTGTCAATCGTAGAAAATAG+TGG | + | chr1_3:76290000-76290019 | Msa0141420:intron | 30.0% | |
| CATCAATAAAATCCGATGAT+AGG | + | chr1_3:76290292-76290311 | Msa0141420:intron | 30.0% | |
| GAAGTTCAAACTTCTCTAAA+AGG | + | chr1_3:76290325-76290344 | Msa0141420:intron | 30.0% | |
| CAATGCTATAAAATTACTGC+AGG | + | chr1_3:76290410-76290429 | Msa0141420:intron | 30.0% | |
| CTTTATGAAGAGAAAATTGG+AGG | + | chr1_3:76290456-76290475 | Msa0141420:three_prime_UTR | 30.0% | |
| ACACTTACCATCACCAAAAT+TGG | + | chr1_3:76286994-76287013 | Msa0141420:five_prime_UTR | 35.0% | |
| !! | TTGGTATCCAATTTTGGTGA+TGG | - | chr1_3:76287004-76287023 | None:intergenic | 35.0% |
| TCACCAAAATTGGATACCAA+AGG | + | chr1_3:76287004-76287023 | Msa0141420:five_prime_UTR | 35.0% | |
| !! | TAGCATACTCCATTTGTTGT+TGG | + | chr1_3:76287051-76287070 | Msa0141420:five_prime_UTR | 35.0% |
| TTATGGTAAGTGTACTGTTG+AGG | - | chr1_3:76287092-76287111 | None:intergenic | 35.0% | |
| !! | TAGGTGTTCTACTTTTGTGA+TGG | - | chr1_3:76287197-76287216 | None:intergenic | 35.0% |
| TCACAAAAGTAGAACACCTA+TGG | + | chr1_3:76287197-76287216 | Msa0141420:five_prime_UTR | 35.0% | |
| GAAAATGGTTGTCAATGAAG+AGG | + | chr1_3:76287284-76287303 | Msa0141420:exon | 35.0% | |
| TCATGCATGTAAAACACCAA+TGG | + | chr1_3:76287425-76287444 | Msa0141420:intron | 35.0% | |
| ! | GAGTCCATCTAATTTTCCAT+TGG | - | chr1_3:76287444-76287463 | None:intergenic | 35.0% |
| CTGACACAAGACCAAAAATA+AGG | - | chr1_3:76287506-76287525 | None:intergenic | 35.0% | |
| !!! | TATTTTTGGTCTTGTGTCAG+TGG | + | chr1_3:76287506-76287525 | Msa0141420:intron | 35.0% |
| ! | CTCTTTTCCAAGGTAACAAA+AGG | + | chr1_3:76287594-76287613 | Msa0141420:intron | 35.0% |
| ATCTTAATCTCGTCTTCAAG+AGG | - | chr1_3:76288452-76288471 | None:intergenic | 35.0% | |
| TCAGGAAGATAAGAAAGCTT+TGG | + | chr1_3:76288604-76288623 | Msa0141420:CDS | 35.0% | |
| AAAACTTTGACCTGAAGAGA+CGG | + | chr1_3:76288726-76288745 | Msa0141420:CDS | 35.0% | |
| ! | TACAACTTTTCATGAACAGG+AGG | + | chr1_3:76288838-76288857 | Msa0141420:intron | 35.0% |
| CCTCAAGTTCATGAATTGTT+TGG | - | chr1_3:76288922-76288941 | None:intergenic | 35.0% | |
| CCAAACAATTCATGAACTTG+AGG | + | chr1_3:76288919-76288938 | Msa0141420:CDS | 35.0% | |
| ! | TGATATGACGACTTGCATTT+TGG | + | chr1_3:76289031-76289050 | Msa0141420:intron | 35.0% |
| TAAAATTTCAGGAGGAGAAG+AGG | + | chr1_3:76289117-76289136 | Msa0141420:intron | 35.0% | |
| !!! | TTTTGCTGTTCTCTCTGATA+TGG | - | chr1_3:76289309-76289328 | None:intergenic | 35.0% |
| AGAAGGCTTAAAGCAATTCT+CGG | + | chr1_3:76289462-76289481 | Msa0141420:CDS | 35.0% | |
| TGGAGATACTGAAAATGCAT+TGG | - | chr1_3:76289494-76289513 | None:intergenic | 35.0% | |
| ! | TTGGAACAAAGTGTTTCCAA+CGG | - | chr1_3:76289602-76289621 | None:intergenic | 35.0% |
| !!! | TGCCTTTTATGTTTGGCTTT+TGG | - | chr1_3:76289621-76289640 | None:intergenic | 35.0% |
| AAAAGGCAACATAGACAGTA+TGG | + | chr1_3:76289633-76289652 | Msa0141420:CDS | 35.0% | |
| !!! | TTCATTTTGGTTATGCTACC+CGG | - | chr1_3:76289673-76289692 | None:intergenic | 35.0% |
| ! | TTTAGAGTCTTCATCAGCAT+TGG | - | chr1_3:76289809-76289828 | None:intergenic | 35.0% |
| !! | TGATTTAGAAAGCACTGATG+TGG | + | chr1_3:76289843-76289862 | Msa0141420:CDS | 35.0% |
| CGATTGACAACTTTGATATG+AGG | - | chr1_3:76289990-76290009 | None:intergenic | 35.0% | |
| CAATAAAATCCGATGATAGG+AGG | + | chr1_3:76290295-76290314 | Msa0141420:intron | 35.0% | |
| TGATGGTAAGTGTACTGTTG+AGG | - | chr1_3:76286987-76287006 | None:intergenic | 40.0% | |
| TAAGTGTACTGTTGAGGCTA+AGG | - | chr1_3:76286981-76287000 | None:intergenic | 40.0% | |
| ! | ACAACATCTGGTTTGACAAG+AGG | - | chr1_3:76287312-76287331 | None:intergenic | 40.0% |
| CAAACCAGATGTTGTTGTGT+TGG | + | chr1_3:76287317-76287336 | Msa0141420:CDS | 40.0% | |
| ATCTCCAACACAACAACATC+TGG | - | chr1_3:76287324-76287343 | None:intergenic | 40.0% | |
| ! | TAGATGGACTCATTGTGTCA+AGG | + | chr1_3:76287453-76287472 | Msa0141420:intron | 40.0% |
| !! | AATGAACTTGCTACATGCCA+TGG | + | chr1_3:76287953-76287972 | Msa0141420:CDS | 40.0% |
| TACATGCCATGGTGAAATCA+AGG | + | chr1_3:76287964-76287983 | Msa0141420:CDS | 40.0% | |
| ! | TTATGGCCTTGATTTCACCA+TGG | - | chr1_3:76287973-76287992 | None:intergenic | 40.0% |
| ATGGTGAAATCAAGGCCATA+AGG | + | chr1_3:76287972-76287991 | Msa0141420:CDS | 40.0% | |
| TGGTGAAATCAAGGCCATAA+GGG | + | chr1_3:76287973-76287992 | Msa0141420:CDS | 40.0% | |
| GAAAGATAAGGCCATAGAAG+AGG | + | chr1_3:76288009-76288028 | Msa0141420:CDS | 40.0% | |
| TGCGAGACTAAGACTTAAAG+AGG | + | chr1_3:76288207-76288226 | Msa0141420:CDS | 40.0% | |
| CTGTCAGTTTCTTGACTTCT+AGG | - | chr1_3:76288319-76288338 | None:intergenic | 40.0% | |
| AGACGAAAAGAAAGATGCGT+TGG | + | chr1_3:76288337-76288356 | Msa0141420:CDS | 40.0% | |
| TGATTCTGCAGCATATTGTG+CGG | - | chr1_3:76288363-76288382 | None:intergenic | 40.0% | |
| !! | GAAGTGCTGTAATCTGTAGA+TGG | - | chr1_3:76288586-76288605 | None:intergenic | 40.0% |
| TCTACAGATTACAGCACTTC+AGG | + | chr1_3:76288586-76288605 | Msa0141420:intron | 40.0% | |
| ACAGGAGGAGAACAAAATCT+TGG | + | chr1_3:76288853-76288872 | Msa0141420:intron | 40.0% | |
| AAATCTTGGAGAAAAGCCAC+CGG | + | chr1_3:76288867-76288886 | Msa0141420:CDS | 40.0% | |
| ! | CAACTTCCACAATCTTTTGC+CGG | - | chr1_3:76288889-76288908 | None:intergenic | 40.0% |
| GAGGAGCTCATCTTATCAAA+TGG | + | chr1_3:76288938-76288957 | Msa0141420:CDS | 40.0% | |
| CAGATTTCTGAGTTGCAAGT+AGG | + | chr1_3:76288995-76289014 | Msa0141420:intron | 40.0% | |
| ACTAGAGAGGGAATTAGCAA+GGG | + | chr1_3:76289142-76289161 | Msa0141420:CDS | 40.0% | |
| CAACAGAATTGCAACTGTTG+CGG | + | chr1_3:76289178-76289197 | Msa0141420:CDS | 40.0% | |
| TCTTCTAACCATTGCCTAAC+AGG | - | chr1_3:76289239-76289258 | None:intergenic | 40.0% | |
| AGGCTAAAAACGCTTGAAGA+AGG | + | chr1_3:76289445-76289464 | Msa0141420:CDS | 40.0% | |
| AGTTTCGTAACGAACAATGG+TGG | + | chr1_3:76289538-76289557 | Msa0141420:CDS | 40.0% | |
| !! | ACAATGGTGGATTGAGAAAC+AGG | + | chr1_3:76289551-76289570 | Msa0141420:CDS | 40.0% |
| AATGAGATACAGGTGAACAC+AGG | + | chr1_3:76289772-76289791 | Msa0141420:CDS | 40.0% | |
| GATGCTCACAAAGAAAGTTG+AGG | + | chr1_3:76290197-76290216 | Msa0141420:intron | 40.0% | |
| !! | GAAAGTTGAGGCATTGACAA+AGG | + | chr1_3:76290209-76290228 | Msa0141420:intron | 40.0% |
| CAAAGGCTATGGAAGTAGAA+TGG | + | chr1_3:76290226-76290245 | Msa0141420:intron | 40.0% | |
| !! | TCTGCTTTTCCTCCTATCAT+CGG | - | chr1_3:76290307-76290326 | None:intergenic | 40.0% |
| TCTCAGACTCTGTAAGTTAG+TGG | - | chr1_3:76290562-76290581 | None:intergenic | 40.0% | |
| CTTCTCTGTATGTACAGAGT+TGG | - | chr1_3:76290586-76290605 | None:intergenic | 40.0% | |
| !! | TGATGGAAAGTGCCCTATTG+AGG | - | chr1_3:76287180-76287199 | None:intergenic | 45.0% |
| !! | TTGGTCTTGTGTCAGTGGTA+AGG | + | chr1_3:76287511-76287530 | Msa0141420:intron | 45.0% |
| CTTAGCTTCAGTTGCCCTTA+TGG | - | chr1_3:76287990-76288009 | None:intergenic | 45.0% | |
| GGCGTGATGACACTTTCAAA+TGG | - | chr1_3:76288431-76288450 | None:intergenic | 45.0% | |
| GCTCACAAAGTCGAAAGAGT+TGG | + | chr1_3:76288631-76288650 | Msa0141420:CDS | 45.0% | |
| ATCACGAATGAGATTAGCGG+TGG | - | chr1_3:76288966-76288985 | None:intergenic | 45.0% | |
| CACTAGAGAGGGAATTAGCA+AGG | + | chr1_3:76289141-76289160 | Msa0141420:CDS | 45.0% | |
| CGCAACAGTTGCAATTCTGT+TGG | - | chr1_3:76289180-76289199 | None:intergenic | 45.0% | |
| CAACTGTTGCGGCTAATGAA+TGG | + | chr1_3:76289189-76289208 | Msa0141420:CDS | 45.0% | |
| GTGATAAGGTCATGCCTGTT+AGG | + | chr1_3:76289222-76289241 | Msa0141420:CDS | 45.0% | |
| TTATGCAGGCAGAGATGCAA+AGG | + | chr1_3:76289267-76289286 | Msa0141420:CDS | 45.0% | |
| AGGTCTACATCACAACCAAG+AGG | + | chr1_3:76289571-76289590 | Msa0141420:CDS | 45.0% | |
| TTTCCAACGGTAGATCCTCT+TGG | - | chr1_3:76289589-76289608 | None:intergenic | 45.0% | |
| GCAACATAGACAGTATGGCT+GGG | + | chr1_3:76289638-76289657 | Msa0141420:CDS | 45.0% | |
| ! | TGGTTATGCTACCCGGTTTT+CGG | - | chr1_3:76289666-76289685 | None:intergenic | 45.0% |
| !! | TGAGGCATTGACAAAGGCTA+TGG | + | chr1_3:76290215-76290234 | Msa0141420:intron | 45.0% |
| !!! | TAGTAATAAATAATTTTATA+CGG | + | chr1_3:76289391-76289410 | Msa0141420:intron | 5.0% |
| TGGCATTGCTTGAAGCAGAG+AGG | + | chr1_3:76288651-76288670 | Msa0141420:CDS | 50.0% | |
| AGATCTCGATCCGTCTCTTC+AGG | - | chr1_3:76288739-76288758 | None:intergenic | 50.0% | |
| AAGCCACCGGCAAAAGATTG+TGG | + | chr1_3:76288880-76288899 | Msa0141420:CDS | 50.0% | |
| ! | CTTCCACAATCTTTTGCCGG+TGG | - | chr1_3:76288886-76288905 | None:intergenic | 50.0% |
| AGGAGAAGAGGACACTAGAG+AGG | + | chr1_3:76289129-76289148 | Msa0141420:CDS | 50.0% | |
| GGAGAAGAGGACACTAGAGA+GGG | + | chr1_3:76289130-76289149 | Msa0141420:CDS | 50.0% | |
| AGGTCATGCCTGTTAGGCAA+TGG | + | chr1_3:76289228-76289247 | Msa0141420:CDS | 50.0% | |
| CGCAGGATAAACTGAAGCTG+AGG | + | chr1_3:76289425-76289444 | Msa0141420:intron | 50.0% | |
| CAACCAAGAGGATCTACCGT+TGG | + | chr1_3:76289583-76289602 | Msa0141420:CDS | 50.0% | |
| GGCAACATAGACAGTATGGC+TGG | + | chr1_3:76289637-76289656 | Msa0141420:CDS | 50.0% | |
| TATGGCTGGGAACCGAAAAC+CGG | + | chr1_3:76289651-76289670 | Msa0141420:CDS | 50.0% | |
| !! | GAAAGCACTGATGTGGTCTC+TGG | + | chr1_3:76289850-76289869 | Msa0141420:CDS | 50.0% |
| ATGGCTGGGAACCGAAAACC+GGG | + | chr1_3:76289652-76289671 | Msa0141420:CDS | 55.0% | |
| GAGACGGATCGAGATCTGCC+AGG | + | chr1_3:76288742-76288761 | Msa0141420:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 76286929 | 76290657 | 76286929 | ID=Msa0141420;Name=Msa0141420 |
| chr1_3 | mRNA | 76286929 | 76290657 | 76286929 | ID=Msa0141420-mRNA-1;Parent=Msa0141420;Name=Msa0141420-mRNA-1;_AED=0.12;_eAED=0.12;_QI=359|0.75|0.77|1|1|1|9|221|492 |
| chr1_3 | exon | 76286929 | 76287369 | 76286929 | ID=Msa0141420-mRNA-1:exon:26649;Parent=Msa0141420-mRNA-1 |
| chr1_3 | exon | 76287945 | 76288030 | 76287945 | ID=Msa0141420-mRNA-1:exon:26650;Parent=Msa0141420-mRNA-1 |
| chr1_3 | exon | 76288181 | 76288246 | 76288181 | ID=Msa0141420-mRNA-1:exon:26651;Parent=Msa0141420-mRNA-1 |
| chr1_3 | exon | 76288314 | 76288484 | 76288314 | ID=Msa0141420-mRNA-1:exon:26652;Parent=Msa0141420-mRNA-1 |
| chr1_3 | exon | 76288593 | 76288793 | 76288593 | ID=Msa0141420-mRNA-1:exon:26653;Parent=Msa0141420-mRNA-1 |
| chr1_3 | exon | 76288857 | 76289012 | 76288857 | ID=Msa0141420-mRNA-1:exon:26654;Parent=Msa0141420-mRNA-1 |
| chr1_3 | exon | 76289128 | 76289346 | 76289128 | ID=Msa0141420-mRNA-1:exon:26655;Parent=Msa0141420-mRNA-1 |
| chr1_3 | exon | 76289430 | 76289922 | 76289430 | ID=Msa0141420-mRNA-1:exon:26656;Parent=Msa0141420-mRNA-1 |
| chr1_3 | exon | 76290432 | 76290657 | 76290432 | ID=Msa0141420-mRNA-1:exon:26657;Parent=Msa0141420-mRNA-1 |
| chr1_3 | five_prime_UTR | 76286929 | 76287287 | 76286929 | ID=Msa0141420-mRNA-1:five_prime_utr;Parent=Msa0141420-mRNA-1 |
| chr1_3 | CDS | 76287288 | 76287369 | 76287288 | ID=Msa0141420-mRNA-1:cds;Parent=Msa0141420-mRNA-1 |
| chr1_3 | CDS | 76287945 | 76288030 | 76287945 | ID=Msa0141420-mRNA-1:cds;Parent=Msa0141420-mRNA-1 |
| chr1_3 | CDS | 76288181 | 76288246 | 76288181 | ID=Msa0141420-mRNA-1:cds;Parent=Msa0141420-mRNA-1 |
| chr1_3 | CDS | 76288314 | 76288484 | 76288314 | ID=Msa0141420-mRNA-1:cds;Parent=Msa0141420-mRNA-1 |
| chr1_3 | CDS | 76288593 | 76288793 | 76288593 | ID=Msa0141420-mRNA-1:cds;Parent=Msa0141420-mRNA-1 |
| chr1_3 | CDS | 76288857 | 76289012 | 76288857 | ID=Msa0141420-mRNA-1:cds;Parent=Msa0141420-mRNA-1 |
| chr1_3 | CDS | 76289128 | 76289346 | 76289128 | ID=Msa0141420-mRNA-1:cds;Parent=Msa0141420-mRNA-1 |
| chr1_3 | CDS | 76289430 | 76289922 | 76289430 | ID=Msa0141420-mRNA-1:cds;Parent=Msa0141420-mRNA-1 |
| chr1_3 | CDS | 76290432 | 76290436 | 76290432 | ID=Msa0141420-mRNA-1:cds;Parent=Msa0141420-mRNA-1 |
| chr1_3 | three_prime_UTR | 76290437 | 76290657 | 76290437 | ID=Msa0141420-mRNA-1:three_prime_utr;Parent=Msa0141420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
